Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028510 | sp|Q9LUH8|HFA6B_ARATH | 48.955 | 335 | 126 | 8 | 13 | 303 | 41 | 374 | 5.17e-93 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0028510 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028510 | Msa0124220 | 0.845872 | 3.095932e-59 | -8.615850e-47 |
| Msa0028510 | Msa0168600 | 0.830053 | 3.645982e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028510 | MtrunA17_Chr1g0185131 | 90.988 | 344 | 28 | 3 | 1 | 343 | 1 | 342 | 0.0 | 624 |
| Msa0028510 | MtrunA17_Chr7g0260331 | 54.286 | 350 | 114 | 9 | 1 | 318 | 1 | 336 | 3.68e-108 | 322 |
| Msa0028510 | MtrunA17_Chr1g0204741 | 58.824 | 221 | 77 | 5 | 20 | 228 | 27 | 245 | 2.34e-79 | 247 |
| Msa0028510 | MtrunA17_Chr3g0135831 | 44.333 | 300 | 147 | 5 | 20 | 303 | 33 | 328 | 1.90e-73 | 233 |
| Msa0028510 | MtrunA17_Chr4g0039891 | 50.000 | 220 | 91 | 3 | 25 | 227 | 4 | 221 | 8.19e-67 | 219 |
| Msa0028510 | MtrunA17_Chr5g0410881 | 50.000 | 218 | 86 | 3 | 31 | 228 | 30 | 244 | 2.04e-65 | 216 |
| Msa0028510 | MtrunA17_Chr4g0071051 | 46.818 | 220 | 107 | 4 | 20 | 231 | 88 | 305 | 1.47e-61 | 204 |
| Msa0028510 | MtrunA17_Chr6g0467041 | 44.221 | 199 | 100 | 3 | 33 | 224 | 22 | 216 | 1.38e-50 | 172 |
| Msa0028510 | MtrunA17_Chr8g0378061 | 42.731 | 227 | 115 | 6 | 34 | 252 | 23 | 242 | 5.69e-50 | 175 |
| Msa0028510 | MtrunA17_Chr8g0392001 | 40.164 | 244 | 122 | 5 | 33 | 252 | 22 | 265 | 2.44e-46 | 162 |
| Msa0028510 | MtrunA17_Chr8g0379701 | 43.689 | 206 | 91 | 5 | 33 | 224 | 12 | 206 | 3.64e-46 | 162 |
| Msa0028510 | MtrunA17_Chr2g0330821 | 40.609 | 197 | 106 | 2 | 23 | 212 | 73 | 265 | 4.43e-45 | 159 |
| Msa0028510 | MtrunA17_Chr6g0485571 | 39.556 | 225 | 120 | 4 | 33 | 242 | 11 | 234 | 5.73e-44 | 155 |
| Msa0028510 | MtrunA17_Chr5g0397881 | 65.263 | 95 | 33 | 0 | 31 | 125 | 22 | 116 | 3.17e-42 | 151 |
| Msa0028510 | MtrunA17_Chr5g0402291 | 41.530 | 183 | 63 | 2 | 31 | 169 | 7 | 189 | 9.00e-41 | 145 |
| Msa0028510 | MtrunA17_Chr6g0472421 | 63.158 | 95 | 35 | 0 | 31 | 125 | 31 | 125 | 1.01e-40 | 147 |
| Msa0028510 | MtrunA17_Chr1g0203601 | 63.158 | 95 | 35 | 0 | 31 | 125 | 16 | 110 | 5.86e-40 | 144 |
| Msa0028510 | MtrunA17_Chr3g0134031 | 64.078 | 103 | 36 | 1 | 31 | 133 | 22 | 123 | 1.54e-39 | 144 |
| Msa0028510 | MtrunA17_Chr5g0441531 | 43.275 | 171 | 66 | 3 | 31 | 171 | 23 | 192 | 2.92e-38 | 138 |
| Msa0028510 | MtrunA17_Chr7g0257331 | 45.062 | 162 | 65 | 3 | 24 | 161 | 9 | 170 | 3.41e-37 | 134 |
| Msa0028510 | MtrunA17_Chr2g0284481 | 39.560 | 182 | 90 | 4 | 33 | 197 | 15 | 193 | 1.37e-36 | 137 |
| Msa0028510 | MtrunA17_Chr4g0047421 | 38.764 | 178 | 90 | 4 | 31 | 196 | 31 | 201 | 4.42e-33 | 123 |
| Msa0028510 | MtrunA17_Chr8g0375041 | 53.636 | 110 | 50 | 1 | 28 | 137 | 4 | 112 | 4.90e-33 | 124 |
| Msa0028510 | MtrunA17_Chr1g0179311 | 38.776 | 147 | 78 | 3 | 90 | 227 | 11 | 154 | 8.96e-26 | 107 |
| Msa0028510 | MtrunA17_Chr1g0179321 | 64.384 | 73 | 26 | 0 | 20 | 92 | 36 | 108 | 2.24e-24 | 96.7 |
| Msa0028510 | MtrunA17_Chr2g0330841 | 34.532 | 139 | 81 | 2 | 93 | 224 | 41 | 176 | 5.03e-22 | 96.7 |
| Msa0028510 | MtrunA17_Chr4g0023771 | 55.738 | 61 | 26 | 1 | 33 | 92 | 15 | 75 | 1.09e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028510 | AT3G22830.1 | 48.955 | 335 | 126 | 8 | 13 | 303 | 41 | 374 | 5.26e-94 | 287 |
| Msa0028510 | AT3G51910.1 | 52.281 | 285 | 90 | 9 | 24 | 303 | 20 | 263 | 6.88e-85 | 259 |
| Msa0028510 | AT3G63350.1 | 44.343 | 327 | 115 | 9 | 18 | 334 | 13 | 282 | 1.76e-77 | 241 |
| Msa0028510 | AT2G26150.1 | 53.202 | 203 | 82 | 3 | 20 | 209 | 31 | 233 | 2.50e-69 | 222 |
| Msa0028510 | AT2G26150.4 | 53.202 | 203 | 82 | 3 | 20 | 209 | 31 | 233 | 2.50e-69 | 222 |
| Msa0028510 | AT1G32330.2 | 50.485 | 206 | 82 | 1 | 18 | 203 | 22 | 227 | 5.04e-64 | 212 |
| Msa0028510 | AT1G32330.1 | 50.485 | 206 | 82 | 1 | 18 | 203 | 22 | 227 | 5.81e-64 | 212 |
| Msa0028510 | AT4G17750.1 | 44.961 | 258 | 109 | 4 | 15 | 242 | 31 | 285 | 8.29e-64 | 212 |
| Msa0028510 | AT5G43840.1 | 42.254 | 284 | 142 | 7 | 20 | 292 | 6 | 278 | 3.25e-63 | 204 |
| Msa0028510 | AT5G16820.1 | 47.807 | 228 | 93 | 4 | 14 | 224 | 16 | 234 | 1.12e-62 | 209 |
| Msa0028510 | AT5G16820.2 | 47.807 | 228 | 93 | 4 | 14 | 224 | 16 | 234 | 1.12e-62 | 209 |
| Msa0028510 | AT3G02990.1 | 46.890 | 209 | 96 | 1 | 33 | 226 | 23 | 231 | 1.27e-59 | 200 |
| Msa0028510 | AT5G03720.2 | 48.223 | 197 | 80 | 3 | 33 | 212 | 55 | 246 | 1.02e-54 | 186 |
| Msa0028510 | AT5G03720.1 | 48.223 | 197 | 80 | 3 | 33 | 212 | 55 | 246 | 1.02e-54 | 186 |
| Msa0028510 | AT1G67970.1 | 46.296 | 216 | 101 | 4 | 33 | 236 | 19 | 231 | 2.58e-52 | 179 |
| Msa0028510 | AT5G54070.1 | 40.704 | 199 | 112 | 3 | 33 | 226 | 71 | 268 | 5.67e-51 | 174 |
| Msa0028510 | AT4G13980.1 | 42.000 | 200 | 106 | 2 | 34 | 226 | 24 | 220 | 9.30e-50 | 174 |
| Msa0028510 | AT3G24520.1 | 42.132 | 197 | 94 | 3 | 33 | 225 | 17 | 197 | 1.18e-44 | 157 |
| Msa0028510 | AT4G36990.1 | 42.373 | 177 | 64 | 2 | 31 | 169 | 12 | 188 | 3.49e-40 | 144 |
| Msa0028510 | AT1G46264.1 | 63.725 | 102 | 37 | 0 | 24 | 125 | 25 | 126 | 2.63e-39 | 144 |
| Msa0028510 | AT5G62020.1 | 62.105 | 95 | 36 | 0 | 31 | 125 | 21 | 115 | 1.21e-38 | 140 |
| Msa0028510 | AT4G18880.1 | 43.850 | 187 | 93 | 2 | 23 | 197 | 5 | 191 | 1.94e-38 | 142 |
| Msa0028510 | AT4G11660.1 | 62.626 | 99 | 36 | 1 | 31 | 129 | 57 | 154 | 2.37e-38 | 142 |
| Msa0028510 | AT5G45710.3 | 36.190 | 210 | 123 | 2 | 33 | 231 | 13 | 222 | 2.72e-36 | 135 |
| Msa0028510 | AT5G45710.1 | 36.190 | 210 | 123 | 2 | 33 | 231 | 13 | 222 | 2.72e-36 | 135 |
| Msa0028510 | AT2G41690.1 | 62.766 | 94 | 35 | 0 | 31 | 124 | 38 | 131 | 1.67e-35 | 130 |
| Msa0028510 | AT2G26150.3 | 47.692 | 130 | 55 | 3 | 93 | 209 | 49 | 178 | 4.08e-30 | 117 |
| Msa0028510 | AT2G26150.2 | 47.692 | 130 | 55 | 3 | 93 | 209 | 49 | 178 | 4.08e-30 | 117 |
| Msa0028510 | AT4G18870.1 | 52.809 | 89 | 37 | 2 | 34 | 120 | 14 | 99 | 4.31e-23 | 98.6 |
| Msa0028510 | AT4G18870.1 | 46.591 | 88 | 47 | 0 | 33 | 120 | 146 | 233 | 3.27e-21 | 93.2 |
| Msa0028510 | AT1G77570.1 | 35.227 | 88 | 54 | 2 | 34 | 118 | 27 | 114 | 1.35e-11 | 62.4 |
Find 79 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTACGTGATTATGAATT+TGG | 0.128353 | 1_1:-53498722 | Msa0028510:CDS |
| ATGCAGAAATTGATCGTTTA+AGG | 0.140595 | 1_1:-53499042 | Msa0028510:CDS |
| ATTATTGTGTTTGAAGTATC+TGG | 0.159629 | 1_1:+53499393 | None:intergenic |
| TTCACTCAGTTATGCTTTCT+AGG | 0.232599 | 1_1:+53498112 | None:intergenic |
| TTCTGTTCCATGAAATTATA+TGG | 0.235121 | 1_1:+53499470 | None:intergenic |
| AACAAGTCCTTCATTTGGTT+GGG | 0.266336 | 1_1:+53499555 | None:intergenic |
| CTTGTTTATTCTGATGAGTT+TGG | 0.282499 | 1_1:-53497924 | Msa0028510:three_prime_UTR |
| AATTACGTGATTATGAATTT+GGG | 0.282722 | 1_1:-53498721 | Msa0028510:CDS |
| AACCACTGAGTCAAGAATTT+AGG | 0.293001 | 1_1:-53498469 | Msa0028510:CDS |
| TTTGCAAATTCCCATCTATC+TGG | 0.293795 | 1_1:+53499160 | None:intergenic |
| CCTTCATTTGGTTGGGGTGG+TGG | 0.306285 | 1_1:+53499562 | None:intergenic |
| ACAATAAGATAAGTATTATA+TGG | 0.316234 | 1_1:+53498037 | None:intergenic |
| AGTCATAGATCATAGATTAA+AGG | 0.329369 | 1_1:+53499673 | None:intergenic |
| GCTATCAAAGAATCTTGTTC+TGG | 0.330741 | 1_1:+53498292 | None:intergenic |
| TCTTCTCTTTCTGTTGTAGT+TGG | 0.332869 | 1_1:+53498852 | None:intergenic |
| ACAACAGAAAGAGAAGAAAA+TGG | 0.339441 | 1_1:-53498846 | Msa0028510:CDS |
| GTCATAGATCATAGATTAAA+GGG | 0.344975 | 1_1:+53499674 | None:intergenic |
| GAGATGGAGCATAGGTTAGA+AGG | 0.345324 | 1_1:-53498944 | Msa0028510:CDS |
| TGCTTGATGATGAAGGGTTC+TGG | 0.373815 | 1_1:-53498580 | Msa0028510:CDS |
| TCATTTGGTTGGGGTGGTGG+TGG | 0.381814 | 1_1:+53499565 | None:intergenic |
| ATTTCAACAAGTCCTTCATT+TGG | 0.388996 | 1_1:+53499550 | None:intergenic |
| GTACCAACCATATAATTTCA+TGG | 0.396015 | 1_1:-53499477 | Msa0028510:CDS |
| TCTTGTGATTCTAGTGCCTC+AGG | 0.405629 | 1_1:+53498617 | None:intergenic |
| TGAATTTGGGGTGTCGGAGT+TGG | 0.413715 | 1_1:-53498708 | Msa0028510:CDS |
| TGTATCCCAAACCACAAAAC+TGG | 0.420129 | 1_1:+53499441 | None:intergenic |
| CAACAAGTCCTTCATTTGGT+TGG | 0.420416 | 1_1:+53499554 | None:intergenic |
| CCAACACAACCAACTTCAAT+AGG | 0.420869 | 1_1:+53499070 | None:intergenic |
| CTCGGTGAAAGAAGAATACT+TGG | 0.431235 | 1_1:-53499599 | Msa0028510:CDS |
| TCATTGTTATCTTCAGAAGT+TGG | 0.432296 | 1_1:+53498512 | None:intergenic |
| CCTATTGAAGTTGGTTGTGT+TGG | 0.439872 | 1_1:-53499070 | Msa0028510:CDS |
| ATAGATGTCTTTGCCCTCTC+AGG | 0.446863 | 1_1:+53499128 | None:intergenic |
| TATCTCTGCAAGAATGCAAC+AGG | 0.457341 | 1_1:-53498072 | Msa0028510:three_prime_UTR |
| TGGGGTGGTGGTGGAATCGT+TGG | 0.458015 | 1_1:+53499574 | None:intergenic |
| CCTTCTCAGCCTATTGAAGT+TGG | 0.458164 | 1_1:-53499079 | Msa0028510:CDS |
| GTATCTGGGAAGGAGATGAT+TGG | 0.458621 | 1_1:+53499408 | None:intergenic |
| ACAAGTCCTTCATTTGGTTG+GGG | 0.464149 | 1_1:+53499556 | None:intergenic |
| TTGATTGGGTAGGTTGCTGC+TGG | 0.464312 | 1_1:-53498317 | Msa0028510:intron |
| GGGGAAAATAATGGATAAAG+AGG | 0.470921 | 1_1:-53498651 | Msa0028510:CDS |
| AGTCCTTCATTTGGTTGGGG+TGG | 0.486652 | 1_1:+53499559 | None:intergenic |
| GTTCCATGAAATTATATGGT+TGG | 0.492988 | 1_1:+53499474 | None:intergenic |
| ATCTGTCATTATTTATGTCA+AGG | 0.493333 | 1_1:-53498266 | Msa0028510:CDS |
| ATGTTTAGTATGAAATTTGA+GGG | 0.495224 | 1_1:-53498548 | Msa0028510:CDS |
| TGATTATGAATTTGGGGTGT+CGG | 0.498346 | 1_1:-53498714 | Msa0028510:CDS |
| GCTTGATGATGAAGGGTTCT+GGG | 0.499647 | 1_1:-53498579 | Msa0028510:CDS |
| TTATTGTGTTTGAAGTATCT+GGG | 0.502771 | 1_1:+53499394 | None:intergenic |
| CAAGGAACTAGACTAGGTAT+TGG | 0.504481 | 1_1:-53498776 | Msa0028510:CDS |
| AATGTTTAGTATGAAATTTG+AGG | 0.507525 | 1_1:-53498549 | Msa0028510:CDS |
| AAACTCATATATGCAATCCT+TGG | 0.512900 | 1_1:+53497996 | None:intergenic |
| ACCTATGCTCCATCTCTAGC+AGG | 0.522765 | 1_1:+53498951 | None:intergenic |
| ATTACTCAGAAGATATATGA+TGG | 0.535579 | 1_1:-53498153 | Msa0028510:CDS |
| ACTAGAATCACAAGAGAAGA+TGG | 0.536908 | 1_1:-53498609 | Msa0028510:CDS |
| AGATGGAGCATAGGTTAGAA+GGG | 0.539593 | 1_1:-53498943 | Msa0028510:CDS |
| GAGGAACATAAGAAGAAAGA+AGG | 0.543697 | 1_1:-53499104 | Msa0028510:CDS |
| CCACCACCCCAACCAAATGA+AGG | 0.544676 | 1_1:-53499562 | Msa0028510:CDS |
| AATGCTAGCTATGGAAATGC+AGG | 0.546390 | 1_1:-53498684 | Msa0028510:CDS |
| GGAGTTGGAAATGCTAGCTA+TGG | 0.547153 | 1_1:-53498693 | Msa0028510:CDS |
| TGTGTTTGAAGTATCTGGGA+AGG | 0.547658 | 1_1:+53499398 | None:intergenic |
| CAAATGAAAGATTCCTGAGA+GGG | 0.550958 | 1_1:-53499141 | Msa0028510:CDS |
| ATTACGTGATTATGAATTTG+GGG | 0.552478 | 1_1:-53498720 | Msa0028510:CDS |
| TTATTTATGTCAAGGACTCA+AGG | 0.552985 | 1_1:-53498258 | Msa0028510:intron |
| GAAAGAGTGCTTGATGATGA+AGG | 0.560834 | 1_1:-53498587 | Msa0028510:CDS |
| TGTAGTTGGTGAATGAAGAC+AGG | 0.561937 | 1_1:+53498866 | None:intergenic |
| CCAACTTCAATAGGCTGAGA+AGG | 0.568557 | 1_1:+53499079 | None:intergenic |
| CACACTGTACCTGCTAGAGA+TGG | 0.572065 | 1_1:-53498960 | Msa0028510:CDS |
| ATCCTAAATTCTTGACTCAG+TGG | 0.576729 | 1_1:+53498467 | None:intergenic |
| AAGAGAAAGCTTGTTGAACA+AGG | 0.580615 | 1_1:-53498794 | Msa0028510:CDS |
| TCATAATCACGTAATTCTAA+CGG | 0.586096 | 1_1:+53498728 | None:intergenic |
| GGGAAGGAGATGATTGGAGA+AGG | 0.595385 | 1_1:+53499414 | None:intergenic |
| GAGAATGAATTATATGTACT+CGG | 0.595766 | 1_1:-53499617 | Msa0028510:exon |
| GAGGGCAAAGACATCTATTG+AGG | 0.598712 | 1_1:-53499123 | Msa0028510:CDS |
| ACTATTATTATAATCGACCA+AGG | 0.607327 | 1_1:-53498013 | Msa0028510:three_prime_UTR |
| ATAATTTCATGGAACAGAAG+TGG | 0.614186 | 1_1:-53499466 | Msa0028510:CDS |
| GCAAATGAAAGATTCCTGAG+AGG | 0.614961 | 1_1:-53499142 | Msa0028510:CDS |
| GTTGAACAAGGAACTAGACT+AGG | 0.638387 | 1_1:-53498782 | Msa0028510:CDS |
| ACCTGCTAGAGATGGAGCAT+AGG | 0.655214 | 1_1:-53498952 | Msa0028510:CDS |
| AGAGGAAGTACATGAACCTG+AGG | 0.670115 | 1_1:-53498633 | Msa0028510:CDS |
| AAAGAGTGCTTGATGATGAA+GGG | 0.670867 | 1_1:-53498586 | Msa0028510:CDS |
| CATCTCTAGCAGGTACAGTG+TGG | 0.697521 | 1_1:+53498961 | None:intergenic |
| GTAGTTGGTGAATGAAGACA+GGG | 0.704135 | 1_1:+53498867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAGATAAGTATTATA+TGG | + | chr1_1:53499571-53499590 | None:intergenic | 15.0% |
| !! | ACAATAAGATAAGTATTATA+TGG | + | chr1_1:53499571-53499590 | None:intergenic | 15.0% |
| !! | TTACAGTTCAAATTTATTCT+CGG | - | chr1_1:53498354-53498373 | Msa0028510:intron | 20.0% |
| !! | AATTACGTGATTATGAATTT+GGG | - | chr1_1:53498884-53498903 | Msa0028510:CDS | 20.0% |
| !! | AATGTTTAGTATGAAATTTG+AGG | - | chr1_1:53499056-53499075 | Msa0028510:CDS | 20.0% |
| !! | ATGTTTAGTATGAAATTTGA+GGG | - | chr1_1:53499057-53499076 | Msa0028510:CDS | 20.0% |
| !! | AGAGAATTTGATATAAACAA+GGG | + | chr1_1:53499254-53499273 | None:intergenic | 20.0% |
| !! | TTACAGTTCAAATTTATTCT+CGG | - | chr1_1:53498354-53498373 | Msa0028510:intron | 20.0% |
| !! | AATTACGTGATTATGAATTT+GGG | - | chr1_1:53498884-53498903 | Msa0028510:CDS | 20.0% |
| !! | AATGTTTAGTATGAAATTTG+AGG | - | chr1_1:53499056-53499075 | Msa0028510:CDS | 20.0% |
| !! | ATGTTTAGTATGAAATTTGA+GGG | - | chr1_1:53499057-53499076 | Msa0028510:CDS | 20.0% |
| !! | AGAGAATTTGATATAAACAA+GGG | + | chr1_1:53499254-53499273 | None:intergenic | 20.0% |
| ! | GTCATAGATCATAGATTAAA+GGG | + | chr1_1:53497934-53497953 | None:intergenic | 25.0% |
| ! | AGTCATAGATCATAGATTAA+AGG | + | chr1_1:53497935-53497954 | None:intergenic | 25.0% |
| ! | GAGAATGAATTATATGTACT+CGG | - | chr1_1:53497988-53498007 | Msa0028510:three_prime_UTR | 25.0% |
| ! | TTCTGTTCCATGAAATTATA+TGG | + | chr1_1:53498138-53498157 | None:intergenic | 25.0% |
| !! | TTATTGTGTTTGAAGTATCT+GGG | + | chr1_1:53498214-53498233 | None:intergenic | 25.0% |
| !! | ATTATTGTGTTTGAAGTATC+TGG | + | chr1_1:53498215-53498234 | None:intergenic | 25.0% |
| !! | TGTGTTATACAATATTTTGC+AGG | - | chr1_1:53498405-53498424 | Msa0028510:intron | 25.0% |
| !! | GTGTTATACAATATTTTGCA+GGG | - | chr1_1:53498406-53498425 | Msa0028510:intron | 25.0% |
| ! | AAAAATTGATCCAGATAGAT+GGG | - | chr1_1:53498435-53498454 | Msa0028510:intron | 25.0% |
| ! | TCATAATCACGTAATTCTAA+CGG | + | chr1_1:53498880-53498899 | None:intergenic | 25.0% |
| ! | GAATTACGTGATTATGAATT+TGG | - | chr1_1:53498883-53498902 | Msa0028510:CDS | 25.0% |
| ! | ATTACGTGATTATGAATTTG+GGG | - | chr1_1:53498885-53498904 | Msa0028510:CDS | 25.0% |
| !! | AAGTCAATGTTTTACTTCAA+AGG | - | chr1_1:53499200-53499219 | Msa0028510:intron | 25.0% |
| ! | GAGAGAATTTGATATAAACA+AGG | + | chr1_1:53499255-53499274 | None:intergenic | 25.0% |
| ! | ATCTGTCATTATTTATGTCA+AGG | - | chr1_1:53499339-53499358 | Msa0028510:intron | 25.0% |
| ! | AGGTAATACAAAATTACAAC+AGG | + | chr1_1:53499420-53499439 | None:intergenic | 25.0% |
| ! | ATTACTCAGAAGATATATGA+TGG | - | chr1_1:53499452-53499471 | Msa0028510:CDS | 25.0% |
| ! | ACTATTATTATAATCGACCA+AGG | - | chr1_1:53499592-53499611 | Msa0028510:CDS | 25.0% |
| ! | GTCATAGATCATAGATTAAA+GGG | + | chr1_1:53497934-53497953 | None:intergenic | 25.0% |
| ! | AGTCATAGATCATAGATTAA+AGG | + | chr1_1:53497935-53497954 | None:intergenic | 25.0% |
| ! | GAGAATGAATTATATGTACT+CGG | - | chr1_1:53497988-53498007 | Msa0028510:three_prime_UTR | 25.0% |
| ! | TTCTGTTCCATGAAATTATA+TGG | + | chr1_1:53498138-53498157 | None:intergenic | 25.0% |
| !! | TTATTGTGTTTGAAGTATCT+GGG | + | chr1_1:53498214-53498233 | None:intergenic | 25.0% |
| !! | ATTATTGTGTTTGAAGTATC+TGG | + | chr1_1:53498215-53498234 | None:intergenic | 25.0% |
| !! | TGTGTTATACAATATTTTGC+AGG | - | chr1_1:53498405-53498424 | Msa0028510:intron | 25.0% |
| !! | GTGTTATACAATATTTTGCA+GGG | - | chr1_1:53498406-53498425 | Msa0028510:intron | 25.0% |
| ! | AAAAATTGATCCAGATAGAT+GGG | - | chr1_1:53498435-53498454 | Msa0028510:intron | 25.0% |
| ! | TCATAATCACGTAATTCTAA+CGG | + | chr1_1:53498880-53498899 | None:intergenic | 25.0% |
| ! | GAATTACGTGATTATGAATT+TGG | - | chr1_1:53498883-53498902 | Msa0028510:CDS | 25.0% |
| ! | ATTACGTGATTATGAATTTG+GGG | - | chr1_1:53498885-53498904 | Msa0028510:CDS | 25.0% |
| !! | AAGTCAATGTTTTACTTCAA+AGG | - | chr1_1:53499200-53499219 | Msa0028510:intron | 25.0% |
| ! | GAGAGAATTTGATATAAACA+AGG | + | chr1_1:53499255-53499274 | None:intergenic | 25.0% |
| ! | ATCTGTCATTATTTATGTCA+AGG | - | chr1_1:53499339-53499358 | Msa0028510:intron | 25.0% |
| ! | AGGTAATACAAAATTACAAC+AGG | + | chr1_1:53499420-53499439 | None:intergenic | 25.0% |
| ! | ATTACTCAGAAGATATATGA+TGG | - | chr1_1:53499452-53499471 | Msa0028510:CDS | 25.0% |
| ! | ACTATTATTATAATCGACCA+AGG | - | chr1_1:53499592-53499611 | Msa0028510:CDS | 25.0% |
| ATTTCAACAAGTCCTTCATT+TGG | + | chr1_1:53498058-53498077 | None:intergenic | 30.0% | |
| !! | TCAAATGTTTTTGTGAGGAA+TGG | + | chr1_1:53498091-53498110 | None:intergenic | 30.0% |
| !! | CTACATCAAATGTTTTTGTG+AGG | + | chr1_1:53498096-53498115 | None:intergenic | 30.0% |
| GTACCAACCATATAATTTCA+TGG | - | chr1_1:53498128-53498147 | Msa0028510:CDS | 30.0% | |
| GTTCCATGAAATTATATGGT+TGG | + | chr1_1:53498134-53498153 | None:intergenic | 30.0% | |
| ATAATTTCATGGAACAGAAG+TGG | - | chr1_1:53498139-53498158 | Msa0028510:CDS | 30.0% | |
| GAAAAATTGATCCAGATAGA+TGG | - | chr1_1:53498434-53498453 | Msa0028510:intron | 30.0% | |
| ATGCAGAAATTGATCGTTTA+AGG | - | chr1_1:53498563-53498582 | Msa0028510:CDS | 30.0% | |
| ACAACAGAAAGAGAAGAAAA+TGG | - | chr1_1:53498759-53498778 | Msa0028510:CDS | 30.0% | |
| !!! | AAGCTTTCTCTTTTTTGTCA+TGG | + | chr1_1:53498803-53498822 | None:intergenic | 30.0% |
| TCATTGTTATCTTCAGAAGT+TGG | + | chr1_1:53499096-53499115 | None:intergenic | 30.0% | |
| TCATGTTTCTTGTGTTTGAT+TGG | - | chr1_1:53499273-53499292 | Msa0028510:intron | 30.0% | |
| CATGTTTCTTGTGTTTGATT+GGG | - | chr1_1:53499274-53499293 | Msa0028510:intron | 30.0% | |
| TTATTTATGTCAAGGACTCA+AGG | - | chr1_1:53499347-53499366 | Msa0028510:intron | 30.0% | |
| TATCTACATATATAGCTTCC+TGG | + | chr1_1:53499389-53499408 | None:intergenic | 30.0% | |
| TGAGTAATCTACATTCATCA+AGG | + | chr1_1:53499440-53499459 | None:intergenic | 30.0% | |
| AAACTCATATATGCAATCCT+TGG | + | chr1_1:53499612-53499631 | None:intergenic | 30.0% | |
| CTTGTTTATTCTGATGAGTT+TGG | - | chr1_1:53499681-53499700 | Msa0028510:five_prime_UTR | 30.0% | |
| ATTTCAACAAGTCCTTCATT+TGG | + | chr1_1:53498058-53498077 | None:intergenic | 30.0% | |
| !! | TCAAATGTTTTTGTGAGGAA+TGG | + | chr1_1:53498091-53498110 | None:intergenic | 30.0% |
| !! | CTACATCAAATGTTTTTGTG+AGG | + | chr1_1:53498096-53498115 | None:intergenic | 30.0% |
| GTACCAACCATATAATTTCA+TGG | - | chr1_1:53498128-53498147 | Msa0028510:CDS | 30.0% | |
| GTTCCATGAAATTATATGGT+TGG | + | chr1_1:53498134-53498153 | None:intergenic | 30.0% | |
| ATAATTTCATGGAACAGAAG+TGG | - | chr1_1:53498139-53498158 | Msa0028510:CDS | 30.0% | |
| GAAAAATTGATCCAGATAGA+TGG | - | chr1_1:53498434-53498453 | Msa0028510:intron | 30.0% | |
| ATGCAGAAATTGATCGTTTA+AGG | - | chr1_1:53498563-53498582 | Msa0028510:CDS | 30.0% | |
| ACAACAGAAAGAGAAGAAAA+TGG | - | chr1_1:53498759-53498778 | Msa0028510:CDS | 30.0% | |
| !!! | AAGCTTTCTCTTTTTTGTCA+TGG | + | chr1_1:53498803-53498822 | None:intergenic | 30.0% |
| TCATTGTTATCTTCAGAAGT+TGG | + | chr1_1:53499096-53499115 | None:intergenic | 30.0% | |
| TCATGTTTCTTGTGTTTGAT+TGG | - | chr1_1:53499273-53499292 | Msa0028510:intron | 30.0% | |
| CATGTTTCTTGTGTTTGATT+GGG | - | chr1_1:53499274-53499293 | Msa0028510:intron | 30.0% | |
| TTATTTATGTCAAGGACTCA+AGG | - | chr1_1:53499347-53499366 | Msa0028510:intron | 30.0% | |
| TATCTACATATATAGCTTCC+TGG | + | chr1_1:53499389-53499408 | None:intergenic | 30.0% | |
| TGAGTAATCTACATTCATCA+AGG | + | chr1_1:53499440-53499459 | None:intergenic | 30.0% | |
| AAACTCATATATGCAATCCT+TGG | + | chr1_1:53499612-53499631 | None:intergenic | 30.0% | |
| CTTGTTTATTCTGATGAGTT+TGG | - | chr1_1:53499681-53499700 | Msa0028510:five_prime_UTR | 30.0% | |
| AACAAGTCCTTCATTTGGTT+GGG | + | chr1_1:53498053-53498072 | None:intergenic | 35.0% | |
| TGATCCTAATGTCTCTATCT+AGG | - | chr1_1:53498297-53498316 | Msa0028510:CDS | 35.0% | |
| !!! | ATGTTTTCTCGTACTGATTG+TGG | - | chr1_1:53498379-53498398 | Msa0028510:intron | 35.0% |
| TTTGCAAATTCCCATCTATC+TGG | + | chr1_1:53498448-53498467 | None:intergenic | 35.0% | |
| CAAATGAAAGATTCCTGAGA+GGG | - | chr1_1:53498464-53498483 | Msa0028510:CDS | 35.0% | |
| GAGGAACATAAGAAGAAAGA+AGG | - | chr1_1:53498501-53498520 | Msa0028510:CDS | 35.0% | |
| TCTTCTCTTTCTGTTGTAGT+TGG | + | chr1_1:53498756-53498775 | None:intergenic | 35.0% | |
| !! | AAGAGAAAGCTTGTTGAACA+AGG | - | chr1_1:53498811-53498830 | Msa0028510:CDS | 35.0% |
| ! | TGATTATGAATTTGGGGTGT+CGG | - | chr1_1:53498891-53498910 | Msa0028510:CDS | 35.0% |
| !! | TTTTGGAAGGGGGAAAATAA+TGG | - | chr1_1:53498945-53498964 | Msa0028510:CDS | 35.0% |
| !! | GGGGAAAATAATGGATAAAG+AGG | - | chr1_1:53498954-53498973 | Msa0028510:CDS | 35.0% |
| ACTAGAATCACAAGAGAAGA+TGG | - | chr1_1:53498996-53499015 | Msa0028510:CDS | 35.0% | |
| !! | AAAGAGTGCTTGATGATGAA+GGG | - | chr1_1:53499019-53499038 | Msa0028510:CDS | 35.0% |
| AACCACTGAGTCAAGAATTT+AGG | - | chr1_1:53499136-53499155 | Msa0028510:CDS | 35.0% | |
| ATCCTAAATTCTTGACTCAG+TGG | + | chr1_1:53499141-53499160 | None:intergenic | 35.0% | |
| TTTCTTGTGTTTGATTGGGT+AGG | - | chr1_1:53499278-53499297 | Msa0028510:intron | 35.0% | |
| GCTATCAAAGAATCTTGTTC+TGG | + | chr1_1:53499316-53499335 | None:intergenic | 35.0% | |
| !!! | GGTTCAATTTTTTTACCACC+AGG | - | chr1_1:53499368-53499387 | Msa0028510:CDS | 35.0% |
| TTCACTCAGTTATGCTTTCT+AGG | + | chr1_1:53499496-53499515 | None:intergenic | 35.0% | |
| AACAAGTCCTTCATTTGGTT+GGG | + | chr1_1:53498053-53498072 | None:intergenic | 35.0% | |
| TGATCCTAATGTCTCTATCT+AGG | - | chr1_1:53498297-53498316 | Msa0028510:CDS | 35.0% | |
| !!! | ATGTTTTCTCGTACTGATTG+TGG | - | chr1_1:53498379-53498398 | Msa0028510:intron | 35.0% |
| TTTGCAAATTCCCATCTATC+TGG | + | chr1_1:53498448-53498467 | None:intergenic | 35.0% | |
| CAAATGAAAGATTCCTGAGA+GGG | - | chr1_1:53498464-53498483 | Msa0028510:CDS | 35.0% | |
| GAGGAACATAAGAAGAAAGA+AGG | - | chr1_1:53498501-53498520 | Msa0028510:CDS | 35.0% | |
| TCTTCTCTTTCTGTTGTAGT+TGG | + | chr1_1:53498756-53498775 | None:intergenic | 35.0% | |
| !! | AAGAGAAAGCTTGTTGAACA+AGG | - | chr1_1:53498811-53498830 | Msa0028510:CDS | 35.0% |
| ! | TGATTATGAATTTGGGGTGT+CGG | - | chr1_1:53498891-53498910 | Msa0028510:CDS | 35.0% |
| !! | TTTTGGAAGGGGGAAAATAA+TGG | - | chr1_1:53498945-53498964 | Msa0028510:CDS | 35.0% |
| !! | GGGGAAAATAATGGATAAAG+AGG | - | chr1_1:53498954-53498973 | Msa0028510:CDS | 35.0% |
| ACTAGAATCACAAGAGAAGA+TGG | - | chr1_1:53498996-53499015 | Msa0028510:CDS | 35.0% | |
| !! | AAAGAGTGCTTGATGATGAA+GGG | - | chr1_1:53499019-53499038 | Msa0028510:CDS | 35.0% |
| AACCACTGAGTCAAGAATTT+AGG | - | chr1_1:53499136-53499155 | Msa0028510:CDS | 35.0% | |
| ATCCTAAATTCTTGACTCAG+TGG | + | chr1_1:53499141-53499160 | None:intergenic | 35.0% | |
| TTTCTTGTGTTTGATTGGGT+AGG | - | chr1_1:53499278-53499297 | Msa0028510:intron | 35.0% | |
| GCTATCAAAGAATCTTGTTC+TGG | + | chr1_1:53499316-53499335 | None:intergenic | 35.0% | |
| !!! | GGTTCAATTTTTTTACCACC+AGG | - | chr1_1:53499368-53499387 | Msa0028510:CDS | 35.0% |
| TTCACTCAGTTATGCTTTCT+AGG | + | chr1_1:53499496-53499515 | None:intergenic | 35.0% | |
| CTCGGTGAAAGAAGAATACT+TGG | - | chr1_1:53498006-53498025 | Msa0028510:three_prime_UTR | 40.0% | |
| ACAAGTCCTTCATTTGGTTG+GGG | + | chr1_1:53498052-53498071 | None:intergenic | 40.0% | |
| CAACAAGTCCTTCATTTGGT+TGG | + | chr1_1:53498054-53498073 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGAGGAATGGTTG+TGG | + | chr1_1:53498085-53498104 | None:intergenic | 40.0% |
| TGTATCCCAAACCACAAAAC+TGG | + | chr1_1:53498167-53498186 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTATCTGGGA+AGG | + | chr1_1:53498210-53498229 | None:intergenic | 40.0% |
| CTGACCTAGATAGAGACATT+AGG | + | chr1_1:53498304-53498323 | None:intergenic | 40.0% | |
| GCAAATGAAAGATTCCTGAG+AGG | - | chr1_1:53498463-53498482 | Msa0028510:CDS | 40.0% | |
| CCAACACAACCAACTTCAAT+AGG | + | chr1_1:53498538-53498557 | None:intergenic | 40.0% | |
| ! | CCTATTGAAGTTGGTTGTGT+TGG | - | chr1_1:53498535-53498554 | Msa0028510:CDS | 40.0% |
| AGATGGAGCATAGGTTAGAA+GGG | - | chr1_1:53498662-53498681 | Msa0028510:CDS | 40.0% | |
| !! | GTAGTTGGTGAATGAAGACA+GGG | + | chr1_1:53498741-53498760 | None:intergenic | 40.0% |
| !! | TGTAGTTGGTGAATGAAGAC+AGG | + | chr1_1:53498742-53498761 | None:intergenic | 40.0% |
| !!! | TCTCTTTTTTGTCATGGTCG+CGG | + | chr1_1:53498797-53498816 | None:intergenic | 40.0% |
| GTTGAACAAGGAACTAGACT+AGG | - | chr1_1:53498823-53498842 | Msa0028510:CDS | 40.0% | |
| CAAGGAACTAGACTAGGTAT+TGG | - | chr1_1:53498829-53498848 | Msa0028510:CDS | 40.0% | |
| AATGCTAGCTATGGAAATGC+AGG | - | chr1_1:53498921-53498940 | Msa0028510:CDS | 40.0% | |
| ! | GCTATGGAAATGCAGGTTTT+TGG | - | chr1_1:53498928-53498947 | Msa0028510:CDS | 40.0% |
| !! | TGGAAATGCAGGTTTTTGGA+AGG | - | chr1_1:53498932-53498951 | Msa0028510:CDS | 40.0% |
| !! | GGAAATGCAGGTTTTTGGAA+GGG | - | chr1_1:53498933-53498952 | Msa0028510:CDS | 40.0% |
| !! | GAAATGCAGGTTTTTGGAAG+GGG | - | chr1_1:53498934-53498953 | Msa0028510:CDS | 40.0% |
| !! | AAATGCAGGTTTTTGGAAGG+GGG | - | chr1_1:53498935-53498954 | Msa0028510:CDS | 40.0% |
| !! | GAAAGAGTGCTTGATGATGA+AGG | - | chr1_1:53499018-53499037 | Msa0028510:CDS | 40.0% |
| CTACATATATAGCTTCCTGG+TGG | + | chr1_1:53499386-53499405 | None:intergenic | 40.0% | |
| TATCTCTGCAAGAATGCAAC+AGG | - | chr1_1:53499533-53499552 | Msa0028510:CDS | 40.0% | |
| CTCGGTGAAAGAAGAATACT+TGG | - | chr1_1:53498006-53498025 | Msa0028510:three_prime_UTR | 40.0% | |
| ACAAGTCCTTCATTTGGTTG+GGG | + | chr1_1:53498052-53498071 | None:intergenic | 40.0% | |
| CAACAAGTCCTTCATTTGGT+TGG | + | chr1_1:53498054-53498073 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGAGGAATGGTTG+TGG | + | chr1_1:53498085-53498104 | None:intergenic | 40.0% |
| TGTATCCCAAACCACAAAAC+TGG | + | chr1_1:53498167-53498186 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTATCTGGGA+AGG | + | chr1_1:53498210-53498229 | None:intergenic | 40.0% |
| CTGACCTAGATAGAGACATT+AGG | + | chr1_1:53498304-53498323 | None:intergenic | 40.0% | |
| GCAAATGAAAGATTCCTGAG+AGG | - | chr1_1:53498463-53498482 | Msa0028510:CDS | 40.0% | |
| CCAACACAACCAACTTCAAT+AGG | + | chr1_1:53498538-53498557 | None:intergenic | 40.0% | |
| ! | CCTATTGAAGTTGGTTGTGT+TGG | - | chr1_1:53498535-53498554 | Msa0028510:CDS | 40.0% |
| AGATGGAGCATAGGTTAGAA+GGG | - | chr1_1:53498662-53498681 | Msa0028510:CDS | 40.0% | |
| !! | GTAGTTGGTGAATGAAGACA+GGG | + | chr1_1:53498741-53498760 | None:intergenic | 40.0% |
| !! | TGTAGTTGGTGAATGAAGAC+AGG | + | chr1_1:53498742-53498761 | None:intergenic | 40.0% |
| !!! | TCTCTTTTTTGTCATGGTCG+CGG | + | chr1_1:53498797-53498816 | None:intergenic | 40.0% |
| GTTGAACAAGGAACTAGACT+AGG | - | chr1_1:53498823-53498842 | Msa0028510:CDS | 40.0% | |
| CAAGGAACTAGACTAGGTAT+TGG | - | chr1_1:53498829-53498848 | Msa0028510:CDS | 40.0% | |
| AATGCTAGCTATGGAAATGC+AGG | - | chr1_1:53498921-53498940 | Msa0028510:CDS | 40.0% | |
| ! | GCTATGGAAATGCAGGTTTT+TGG | - | chr1_1:53498928-53498947 | Msa0028510:CDS | 40.0% |
| !! | TGGAAATGCAGGTTTTTGGA+AGG | - | chr1_1:53498932-53498951 | Msa0028510:CDS | 40.0% |
| !! | GGAAATGCAGGTTTTTGGAA+GGG | - | chr1_1:53498933-53498952 | Msa0028510:CDS | 40.0% |
| !! | GAAATGCAGGTTTTTGGAAG+GGG | - | chr1_1:53498934-53498953 | Msa0028510:CDS | 40.0% |
| !! | AAATGCAGGTTTTTGGAAGG+GGG | - | chr1_1:53498935-53498954 | Msa0028510:CDS | 40.0% |
| !! | GAAAGAGTGCTTGATGATGA+AGG | - | chr1_1:53499018-53499037 | Msa0028510:CDS | 40.0% |
| CTACATATATAGCTTCCTGG+TGG | + | chr1_1:53499386-53499405 | None:intergenic | 40.0% | |
| TATCTCTGCAAGAATGCAAC+AGG | - | chr1_1:53499533-53499552 | Msa0028510:CDS | 40.0% | |
| !! | TGGCACCAGTTTTGTGGTTT+GGG | - | chr1_1:53498159-53498178 | Msa0028510:intron | 45.0% |
| GTATCTGGGAAGGAGATGAT+TGG | + | chr1_1:53498200-53498219 | None:intergenic | 45.0% | |
| ATAGATGTCTTTGCCCTCTC+AGG | + | chr1_1:53498480-53498499 | None:intergenic | 45.0% | |
| GAGGGCAAAGACATCTATTG+AGG | - | chr1_1:53498482-53498501 | Msa0028510:CDS | 45.0% | |
| CCAACTTCAATAGGCTGAGA+AGG | + | chr1_1:53498529-53498548 | None:intergenic | 45.0% | |
| CCTTCTCAGCCTATTGAAGT+TGG | - | chr1_1:53498526-53498545 | Msa0028510:CDS | 45.0% | |
| GAGATGGAGCATAGGTTAGA+AGG | - | chr1_1:53498661-53498680 | Msa0028510:CDS | 45.0% | |
| GGAGTTGGAAATGCTAGCTA+TGG | - | chr1_1:53498912-53498931 | Msa0028510:CDS | 45.0% | |
| ! | AGAGGAAGTACATGAACCTG+AGG | - | chr1_1:53498972-53498991 | Msa0028510:CDS | 45.0% |
| TCTTGTGATTCTAGTGCCTC+AGG | + | chr1_1:53498991-53499010 | None:intergenic | 45.0% | |
| !! | TGCTTGATGATGAAGGGTTC+TGG | - | chr1_1:53499025-53499044 | Msa0028510:CDS | 45.0% |
| !! | GCTTGATGATGAAGGGTTCT+GGG | - | chr1_1:53499026-53499045 | Msa0028510:CDS | 45.0% |
| !! | TGGCACCAGTTTTGTGGTTT+GGG | - | chr1_1:53498159-53498178 | Msa0028510:intron | 45.0% |
| GTATCTGGGAAGGAGATGAT+TGG | + | chr1_1:53498200-53498219 | None:intergenic | 45.0% | |
| ATAGATGTCTTTGCCCTCTC+AGG | + | chr1_1:53498480-53498499 | None:intergenic | 45.0% | |
| GAGGGCAAAGACATCTATTG+AGG | - | chr1_1:53498482-53498501 | Msa0028510:CDS | 45.0% | |
| CCAACTTCAATAGGCTGAGA+AGG | + | chr1_1:53498529-53498548 | None:intergenic | 45.0% | |
| CCTTCTCAGCCTATTGAAGT+TGG | - | chr1_1:53498526-53498545 | Msa0028510:CDS | 45.0% | |
| GAGATGGAGCATAGGTTAGA+AGG | - | chr1_1:53498661-53498680 | Msa0028510:CDS | 45.0% | |
| GGAGTTGGAAATGCTAGCTA+TGG | - | chr1_1:53498912-53498931 | Msa0028510:CDS | 45.0% | |
| ! | AGAGGAAGTACATGAACCTG+AGG | - | chr1_1:53498972-53498991 | Msa0028510:CDS | 45.0% |
| TCTTGTGATTCTAGTGCCTC+AGG | + | chr1_1:53498991-53499010 | None:intergenic | 45.0% | |
| !! | TGCTTGATGATGAAGGGTTC+TGG | - | chr1_1:53499025-53499044 | Msa0028510:CDS | 45.0% |
| !! | GCTTGATGATGAAGGGTTCT+GGG | - | chr1_1:53499026-53499045 | Msa0028510:CDS | 45.0% |
| AGTCCTTCATTTGGTTGGGG+TGG | + | chr1_1:53498049-53498068 | None:intergenic | 50.0% | |
| ! | CAGAAGTGGCACCAGTTTTG+TGG | - | chr1_1:53498153-53498172 | Msa0028510:CDS | 50.0% |
| !! | GTGGCACCAGTTTTGTGGTT+TGG | - | chr1_1:53498158-53498177 | Msa0028510:intron | 50.0% |
| GGGAAGGAGATGATTGGAGA+AGG | + | chr1_1:53498194-53498213 | None:intergenic | 50.0% | |
| CATCTCTAGCAGGTACAGTG+TGG | + | chr1_1:53498647-53498666 | None:intergenic | 50.0% | |
| CACACTGTACCTGCTAGAGA+TGG | - | chr1_1:53498645-53498664 | Msa0028510:CDS | 50.0% | |
| ACCTGCTAGAGATGGAGCAT+AGG | - | chr1_1:53498653-53498672 | Msa0028510:CDS | 50.0% | |
| ACCTATGCTCCATCTCTAGC+AGG | + | chr1_1:53498657-53498676 | None:intergenic | 50.0% | |
| !! | TGAATTTGGGGTGTCGGAGT+TGG | - | chr1_1:53498897-53498916 | Msa0028510:CDS | 50.0% |
| TTGATTGGGTAGGTTGCTGC+TGG | - | chr1_1:53499288-53499307 | Msa0028510:intron | 50.0% | |
| AGTCCTTCATTTGGTTGGGG+TGG | + | chr1_1:53498049-53498068 | None:intergenic | 50.0% | |
| ! | CAGAAGTGGCACCAGTTTTG+TGG | - | chr1_1:53498153-53498172 | Msa0028510:CDS | 50.0% |
| !! | GTGGCACCAGTTTTGTGGTT+TGG | - | chr1_1:53498158-53498177 | Msa0028510:intron | 50.0% |
| GGGAAGGAGATGATTGGAGA+AGG | + | chr1_1:53498194-53498213 | None:intergenic | 50.0% | |
| CATCTCTAGCAGGTACAGTG+TGG | + | chr1_1:53498647-53498666 | None:intergenic | 50.0% | |
| CACACTGTACCTGCTAGAGA+TGG | - | chr1_1:53498645-53498664 | Msa0028510:CDS | 50.0% | |
| ACCTGCTAGAGATGGAGCAT+AGG | - | chr1_1:53498653-53498672 | Msa0028510:CDS | 50.0% | |
| ACCTATGCTCCATCTCTAGC+AGG | + | chr1_1:53498657-53498676 | None:intergenic | 50.0% | |
| !! | TGAATTTGGGGTGTCGGAGT+TGG | - | chr1_1:53498897-53498916 | Msa0028510:CDS | 50.0% |
| TTGATTGGGTAGGTTGCTGC+TGG | - | chr1_1:53499288-53499307 | Msa0028510:intron | 50.0% | |
| ! | TCATTTGGTTGGGGTGGTGG+TGG | + | chr1_1:53498043-53498062 | None:intergenic | 55.0% |
| CCTTCATTTGGTTGGGGTGG+TGG | + | chr1_1:53498046-53498065 | None:intergenic | 55.0% | |
| CCACCACCCCAACCAAATGA+AGG | - | chr1_1:53498043-53498062 | Msa0028510:three_prime_UTR | 55.0% | |
| ! | TCATTTGGTTGGGGTGGTGG+TGG | + | chr1_1:53498043-53498062 | None:intergenic | 55.0% |
| CCTTCATTTGGTTGGGGTGG+TGG | + | chr1_1:53498046-53498065 | None:intergenic | 55.0% | |
| CCACCACCCCAACCAAATGA+AGG | - | chr1_1:53498043-53498062 | Msa0028510:three_prime_UTR | 55.0% | |
| !! | TGGGGTGGTGGTGGAATCGT+TGG | + | chr1_1:53498034-53498053 | None:intergenic | 60.0% |
| !! | TGGGGTGGTGGTGGAATCGT+TGG | + | chr1_1:53498034-53498053 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 53497920 | 53499707 | 53497920 | ID=Msa0028510;Name=Msa0028510 |
| chr1_1 | mRNA | 53497920 | 53499707 | 53497920 | ID=Msa0028510-mRNA-1;Parent=Msa0028510;Name=Msa0028510-mRNA-1;_AED=0.20;_eAED=0.20;_QI=72|0.66|0.5|1|1|1|4|193|385 |
| chr1_1 | exon | 53497920 | 53498175 | 53497920 | ID=Msa0028510-mRNA-1:exon:15802;Parent=Msa0028510-mRNA-1 |
| chr1_1 | exon | 53498259 | 53498327 | 53498259 | ID=Msa0028510-mRNA-1:exon:15801;Parent=Msa0028510-mRNA-1 |
| chr1_1 | exon | 53498451 | 53499200 | 53498451 | ID=Msa0028510-mRNA-1:exon:15800;Parent=Msa0028510-mRNA-1 |
| chr1_1 | exon | 53499360 | 53499707 | 53499360 | ID=Msa0028510-mRNA-1:exon:15799;Parent=Msa0028510-mRNA-1 |
| chr1_1 | five_prime_UTR | 53499636 | 53499707 | 53499636 | ID=Msa0028510-mRNA-1:five_prime_utr;Parent=Msa0028510-mRNA-1 |
| chr1_1 | CDS | 53499360 | 53499635 | 53499360 | ID=Msa0028510-mRNA-1:cds;Parent=Msa0028510-mRNA-1 |
| chr1_1 | CDS | 53498451 | 53499200 | 53498451 | ID=Msa0028510-mRNA-1:cds;Parent=Msa0028510-mRNA-1 |
| chr1_1 | CDS | 53498259 | 53498327 | 53498259 | ID=Msa0028510-mRNA-1:cds;Parent=Msa0028510-mRNA-1 |
| chr1_1 | CDS | 53498113 | 53498175 | 53498113 | ID=Msa0028510-mRNA-1:cds;Parent=Msa0028510-mRNA-1 |
| chr1_1 | three_prime_UTR | 53497920 | 53498112 | 53497920 | ID=Msa0028510-mRNA-1:three_prime_utr;Parent=Msa0028510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
