Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168600 | sp|Q9LUH8|HFA6B_ARATH | 48.955 | 335 | 126 | 8 | 10 | 300 | 41 | 374 | 1.03e-93 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168600 | G7ICS1 | 88.421 | 380 | 35 | 4 | 1 | 379 | 1 | 372 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0168600 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028510 | Msa0168600 | 0.830053 | 3.645982e-55 | -8.615850e-47 |
| Msa0124220 | Msa0168600 | 0.803330 | 3.669848e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168600 | MtrunA17_Chr1g0185131 | 90.909 | 341 | 28 | 3 | 1 | 340 | 4 | 342 | 0.0 | 622 |
| Msa0168600 | MtrunA17_Chr7g0260331 | 53.736 | 348 | 113 | 9 | 1 | 315 | 4 | 336 | 2.28e-106 | 317 |
| Msa0168600 | MtrunA17_Chr1g0204741 | 48.408 | 314 | 114 | 9 | 17 | 311 | 27 | 311 | 2.02e-81 | 252 |
| Msa0168600 | MtrunA17_Chr3g0135831 | 45.000 | 300 | 145 | 5 | 17 | 300 | 33 | 328 | 1.07e-76 | 241 |
| Msa0168600 | MtrunA17_Chr4g0039891 | 50.000 | 220 | 91 | 3 | 22 | 224 | 4 | 221 | 4.75e-68 | 223 |
| Msa0168600 | MtrunA17_Chr5g0410881 | 50.917 | 218 | 84 | 4 | 28 | 225 | 30 | 244 | 3.00e-67 | 221 |
| Msa0168600 | MtrunA17_Chr4g0071051 | 47.032 | 219 | 108 | 4 | 17 | 228 | 88 | 305 | 3.65e-62 | 205 |
| Msa0168600 | MtrunA17_Chr6g0467041 | 43.719 | 199 | 101 | 3 | 30 | 221 | 22 | 216 | 4.70e-49 | 168 |
| Msa0168600 | MtrunA17_Chr8g0378061 | 44.724 | 199 | 97 | 4 | 31 | 221 | 23 | 216 | 1.85e-48 | 171 |
| Msa0168600 | MtrunA17_Chr8g0392001 | 44.878 | 205 | 94 | 4 | 30 | 215 | 22 | 226 | 3.38e-46 | 162 |
| Msa0168600 | MtrunA17_Chr8g0379701 | 42.512 | 207 | 92 | 5 | 30 | 221 | 12 | 206 | 7.63e-46 | 162 |
| Msa0168600 | MtrunA17_Chr6g0485571 | 40.000 | 225 | 119 | 4 | 30 | 239 | 11 | 234 | 9.57e-45 | 157 |
| Msa0168600 | MtrunA17_Chr2g0330821 | 41.579 | 190 | 100 | 2 | 20 | 202 | 73 | 258 | 4.82e-44 | 156 |
| Msa0168600 | MtrunA17_Chr5g0397881 | 65.957 | 94 | 32 | 0 | 28 | 121 | 22 | 115 | 1.02e-41 | 150 |
| Msa0168600 | MtrunA17_Chr6g0472421 | 63.830 | 94 | 34 | 0 | 28 | 121 | 31 | 124 | 3.22e-40 | 145 |
| Msa0168600 | MtrunA17_Chr5g0402291 | 60.377 | 106 | 38 | 1 | 28 | 129 | 7 | 112 | 4.06e-40 | 144 |
| Msa0168600 | MtrunA17_Chr1g0203601 | 63.830 | 94 | 34 | 0 | 28 | 121 | 16 | 109 | 1.92e-39 | 142 |
| Msa0168600 | MtrunA17_Chr3g0134031 | 64.078 | 103 | 36 | 1 | 28 | 130 | 22 | 123 | 4.44e-39 | 143 |
| Msa0168600 | MtrunA17_Chr5g0441531 | 43.275 | 171 | 66 | 3 | 28 | 168 | 23 | 192 | 4.04e-38 | 137 |
| Msa0168600 | MtrunA17_Chr2g0284481 | 38.071 | 197 | 96 | 5 | 30 | 209 | 15 | 202 | 3.84e-37 | 138 |
| Msa0168600 | MtrunA17_Chr7g0257331 | 45.062 | 162 | 65 | 3 | 21 | 158 | 9 | 170 | 5.77e-37 | 134 |
| Msa0168600 | MtrunA17_Chr4g0047421 | 38.764 | 178 | 90 | 4 | 28 | 193 | 31 | 201 | 2.04e-32 | 121 |
| Msa0168600 | MtrunA17_Chr8g0375041 | 53.398 | 103 | 48 | 0 | 25 | 127 | 4 | 106 | 3.75e-32 | 121 |
| Msa0168600 | MtrunA17_Chr1g0179311 | 40.136 | 147 | 76 | 3 | 87 | 224 | 11 | 154 | 2.66e-26 | 108 |
| Msa0168600 | MtrunA17_Chr1g0179321 | 64.384 | 73 | 26 | 0 | 17 | 89 | 36 | 108 | 2.30e-24 | 96.3 |
| Msa0168600 | MtrunA17_Chr2g0330841 | 34.532 | 139 | 81 | 2 | 90 | 221 | 41 | 176 | 5.42e-21 | 93.6 |
| Msa0168600 | MtrunA17_Chr4g0023771 | 55.738 | 61 | 26 | 1 | 30 | 89 | 15 | 75 | 9.40e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168600 | AT3G22830.1 | 48.955 | 335 | 126 | 8 | 10 | 300 | 41 | 374 | 1.05e-94 | 289 |
| Msa0168600 | AT3G51910.1 | 52.281 | 285 | 90 | 8 | 21 | 300 | 20 | 263 | 4.92e-85 | 259 |
| Msa0168600 | AT3G63350.1 | 43.731 | 327 | 117 | 8 | 15 | 331 | 13 | 282 | 1.71e-77 | 241 |
| Msa0168600 | AT2G26150.1 | 48.848 | 217 | 100 | 1 | 17 | 222 | 31 | 247 | 9.79e-71 | 225 |
| Msa0168600 | AT2G26150.4 | 48.848 | 217 | 100 | 1 | 17 | 222 | 31 | 247 | 9.79e-71 | 225 |
| Msa0168600 | AT1G32330.1 | 50.485 | 206 | 82 | 1 | 15 | 200 | 22 | 227 | 7.75e-65 | 214 |
| Msa0168600 | AT1G32330.2 | 50.485 | 206 | 82 | 1 | 15 | 200 | 22 | 227 | 8.04e-65 | 214 |
| Msa0168600 | AT4G17750.1 | 44.531 | 256 | 113 | 3 | 12 | 239 | 31 | 285 | 8.32e-65 | 214 |
| Msa0168600 | AT5G16820.1 | 47.807 | 228 | 93 | 4 | 11 | 221 | 16 | 234 | 3.57e-64 | 213 |
| Msa0168600 | AT5G16820.2 | 47.807 | 228 | 93 | 4 | 11 | 221 | 16 | 234 | 3.57e-64 | 213 |
| Msa0168600 | AT5G43840.1 | 42.254 | 284 | 142 | 7 | 17 | 289 | 6 | 278 | 2.68e-63 | 204 |
| Msa0168600 | AT3G02990.1 | 47.847 | 209 | 89 | 3 | 30 | 221 | 23 | 228 | 9.33e-61 | 203 |
| Msa0168600 | AT5G03720.2 | 46.829 | 205 | 89 | 3 | 30 | 220 | 55 | 253 | 4.39e-55 | 187 |
| Msa0168600 | AT5G03720.1 | 46.829 | 205 | 89 | 3 | 30 | 220 | 55 | 253 | 4.39e-55 | 187 |
| Msa0168600 | AT1G67970.1 | 44.907 | 216 | 104 | 3 | 30 | 233 | 19 | 231 | 2.38e-52 | 179 |
| Msa0168600 | AT5G54070.1 | 41.709 | 199 | 110 | 3 | 30 | 223 | 71 | 268 | 1.17e-50 | 173 |
| Msa0168600 | AT4G13980.1 | 42.000 | 200 | 106 | 2 | 31 | 223 | 24 | 220 | 1.18e-48 | 171 |
| Msa0168600 | AT3G24520.1 | 41.451 | 193 | 101 | 2 | 30 | 222 | 17 | 197 | 2.79e-45 | 159 |
| Msa0168600 | AT4G36990.1 | 64.894 | 94 | 33 | 0 | 28 | 121 | 12 | 105 | 1.08e-39 | 143 |
| Msa0168600 | AT1G46264.1 | 37.778 | 225 | 81 | 3 | 21 | 187 | 25 | 248 | 3.43e-39 | 143 |
| Msa0168600 | AT5G62020.1 | 62.766 | 94 | 35 | 0 | 28 | 121 | 21 | 114 | 3.92e-38 | 139 |
| Msa0168600 | AT4G18880.1 | 43.316 | 187 | 94 | 2 | 20 | 194 | 5 | 191 | 7.80e-38 | 140 |
| Msa0168600 | AT4G11660.1 | 62.626 | 99 | 36 | 1 | 28 | 126 | 57 | 154 | 2.72e-37 | 139 |
| Msa0168600 | AT5G45710.3 | 35.714 | 210 | 124 | 2 | 30 | 228 | 13 | 222 | 1.67e-36 | 136 |
| Msa0168600 | AT5G45710.1 | 35.714 | 210 | 124 | 2 | 30 | 228 | 13 | 222 | 1.67e-36 | 136 |
| Msa0168600 | AT2G41690.1 | 62.766 | 94 | 35 | 0 | 28 | 121 | 38 | 131 | 1.68e-35 | 130 |
| Msa0168600 | AT2G26150.3 | 41.958 | 143 | 72 | 1 | 90 | 221 | 49 | 191 | 1.74e-31 | 121 |
| Msa0168600 | AT2G26150.2 | 41.958 | 143 | 72 | 1 | 90 | 221 | 49 | 191 | 1.74e-31 | 121 |
| Msa0168600 | AT4G18870.1 | 52.809 | 89 | 37 | 2 | 31 | 117 | 14 | 99 | 4.49e-23 | 98.2 |
| Msa0168600 | AT4G18870.1 | 46.591 | 88 | 47 | 0 | 30 | 117 | 146 | 233 | 3.59e-21 | 92.8 |
| Msa0168600 | AT1G77570.1 | 35.227 | 88 | 54 | 2 | 31 | 115 | 27 | 114 | 1.24e-11 | 62.8 |
Find 78 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTATGTGATTATGAATT+TGG | 0.118681 | 1_4:-51420261 | Msa0168600:CDS |
| ATTATTGTGTTTGAAGTATC+TGG | 0.159629 | 1_4:+51420948 | None:intergenic |
| CCTATTGAAATTGGTTGTTT+TGG | 0.221927 | 1_4:-51420609 | Msa0168600:CDS |
| CCTTCTCAGCCTATTGAAAT+TGG | 0.226827 | 1_4:-51420618 | Msa0168600:CDS |
| TTCACTCAGTTATGCTTTCT+AGG | 0.232599 | 1_4:+51419645 | None:intergenic |
| TTCTGTTCCATGAAATTATA+TGG | 0.235121 | 1_4:+51421025 | None:intergenic |
| AACAAGTCCTTCATTTGGTT+GGG | 0.266336 | 1_4:+51421110 | None:intergenic |
| ATGCAGAAATCGATCGTTTA+AGG | 0.269285 | 1_4:-51420581 | Msa0168600:CDS |
| AATTATGTGATTATGAATTT+GGG | 0.270026 | 1_4:-51420260 | Msa0168600:CDS |
| AACCACTGAGTCAAGAATTT+AGG | 0.293001 | 1_4:-51420008 | Msa0168600:CDS |
| TTTGCAAATTCCCATCTATC+TGG | 0.293795 | 1_4:+51420699 | None:intergenic |
| CCTTCATTTGGTTGGGGTGG+TGG | 0.306285 | 1_4:+51421117 | None:intergenic |
| ATAGATGTCTTTGCCCTCTT+AGG | 0.308469 | 1_4:+51420667 | None:intergenic |
| ACAACAGAAAGAGAAGAAAA+AGG | 0.330208 | 1_4:-51420385 | Msa0168600:CDS |
| GCTATCAAAGAATCTTGTTC+TGG | 0.330741 | 1_4:+51419831 | None:intergenic |
| TCTTCTCTTTCTGTTGTAGT+TGG | 0.332869 | 1_4:+51420391 | None:intergenic |
| GAGATGGAGCATAGGTTAGA+AGG | 0.345324 | 1_4:-51420483 | Msa0168600:CDS |
| TAAAGTCATAGATCATATAT+TGG | 0.360023 | 1_4:+51421211 | None:intergenic |
| TGCTTGATGATGAAGGGTTC+TGG | 0.373815 | 1_4:-51420119 | Msa0168600:CDS |
| TCATTTGGTTGGGGTGGTGG+TGG | 0.381814 | 1_4:+51421120 | None:intergenic |
| GCAAATGAAAGATTCCTAAG+AGG | 0.387551 | 1_4:-51420681 | Msa0168600:CDS |
| ATTTCAACAAGTCCTTCATT+TGG | 0.388996 | 1_4:+51421105 | None:intergenic |
| GTACCAACCATATAATTTCA+TGG | 0.396015 | 1_4:-51421032 | Msa0168600:CDS |
| TCTTGTGATTCTAGTGCCTC+AGG | 0.405629 | 1_4:+51420156 | None:intergenic |
| CCAAAACAACCAATTTCAAT+AGG | 0.410504 | 1_4:+51420609 | None:intergenic |
| TGTATCCCAAACCACAAAAC+TGG | 0.420129 | 1_4:+51420996 | None:intergenic |
| CAACAAGTCCTTCATTTGGT+TGG | 0.420416 | 1_4:+51421109 | None:intergenic |
| CTCGGTGAAAGAAGAATACT+TGG | 0.431235 | 1_4:-51421154 | Msa0168600:CDS |
| GACATCTATTGAGGAACATA+AGG | 0.431334 | 1_4:-51420653 | Msa0168600:CDS |
| TCATTGTTATCTTCAGAAGT+TGG | 0.432296 | 1_4:+51420051 | None:intergenic |
| TGAATTTGGGGCGTCGGAGT+TGG | 0.444553 | 1_4:-51420247 | Msa0168600:CDS |
| TGGGGTGGTGGTGGAATCGT+TGG | 0.458015 | 1_4:+51421129 | None:intergenic |
| GTATCTGGGAAGGAGATGAT+TGG | 0.458621 | 1_4:+51420963 | None:intergenic |
| ACAAGTCCTTCATTTGGTTG+GGG | 0.464149 | 1_4:+51421111 | None:intergenic |
| TTGATTGGGTAGGTTGCTGC+TGG | 0.464312 | 1_4:-51419856 | Msa0168600:intron |
| GGGGAAAATAATGGATAAAG+AGG | 0.470921 | 1_4:-51420190 | Msa0168600:CDS |
| AGTCCTTCATTTGGTTGGGG+TGG | 0.486652 | 1_4:+51421114 | None:intergenic |
| GTTCCATGAAATTATATGGT+TGG | 0.492988 | 1_4:+51421029 | None:intergenic |
| ATCTGTCATTATTTATGTCA+AGG | 0.493333 | 1_4:-51419805 | Msa0168600:CDS |
| ATGTTTAGTATGAAATTTGA+GGG | 0.495224 | 1_4:-51420087 | Msa0168600:CDS |
| CAAATGAAAGATTCCTAAGA+GGG | 0.499295 | 1_4:-51420680 | Msa0168600:CDS |
| GCTTGATGATGAAGGGTTCT+GGG | 0.499647 | 1_4:-51420118 | Msa0168600:CDS |
| AATGTTAGCTATGGAAATGC+AGG | 0.499978 | 1_4:-51420223 | Msa0168600:CDS |
| TGATTATGAATTTGGGGCGT+CGG | 0.500642 | 1_4:-51420253 | Msa0168600:CDS |
| TTATTGTGTTTGAAGTATCT+GGG | 0.502771 | 1_4:+51420949 | None:intergenic |
| CAAGGAACTAGACTAGGTAT+TGG | 0.504481 | 1_4:-51420315 | Msa0168600:CDS |
| AATGTTTAGTATGAAATTTG+AGG | 0.507525 | 1_4:-51420088 | Msa0168600:CDS |
| GTCATAGATCATATATTGGA+GGG | 0.508864 | 1_4:+51421215 | None:intergenic |
| GAGGAACATAAGGAGAAAGA+AGG | 0.510760 | 1_4:-51420643 | Msa0168600:CDS |
| ACCTATGCTCCATCTCTAGC+AGG | 0.522765 | 1_4:+51420490 | None:intergenic |
| ATTACTCAGAAGATATATGA+TGG | 0.535579 | 1_4:-51419686 | Msa0168600:CDS |
| ACTAGAATCACAAGAGAAGA+TGG | 0.536908 | 1_4:-51420148 | Msa0168600:CDS |
| AGATGGAGCATAGGTTAGAA+GGG | 0.539593 | 1_4:-51420482 | Msa0168600:CDS |
| CCACCACCCCAACCAAATGA+AGG | 0.544676 | 1_4:-51421117 | Msa0168600:CDS |
| TGTGTTTGAAGTATCTGGGA+AGG | 0.547658 | 1_4:+51420953 | None:intergenic |
| GGAGTTGGAAATGTTAGCTA+TGG | 0.549635 | 1_4:-51420232 | Msa0168600:CDS |
| TTATTTATGTCAAGGACTCA+AGG | 0.552985 | 1_4:-51419797 | Msa0168600:intron |
| CCAATTTCAATAGGCTGAGA+AGG | 0.558280 | 1_4:+51420618 | None:intergenic |
| AGGAACATAAGGAGAAAGAA+GGG | 0.559452 | 1_4:-51420642 | Msa0168600:CDS |
| GAAAGAGTGCTTGATGATGA+AGG | 0.560834 | 1_4:-51420126 | Msa0168600:CDS |
| TGTAGTTGGTGAATGAAGAC+AGG | 0.561937 | 1_4:+51420405 | None:intergenic |
| GAGGGCAAAGACATCTATTG+AGG | 0.565306 | 1_4:-51420662 | Msa0168600:CDS |
| CACACTGTACCTGCTAGAGA+TGG | 0.572065 | 1_4:-51420499 | Msa0168600:CDS |
| ATCCTAAATTCTTGACTCAG+TGG | 0.576729 | 1_4:+51420006 | None:intergenic |
| AAGAGAAAGCTTGTTGAACA+AGG | 0.580615 | 1_4:-51420333 | Msa0168600:CDS |
| TCATAATCACATAATTCTAA+CGG | 0.585686 | 1_4:+51420267 | None:intergenic |
| ATTATGTGATTATGAATTTG+GGG | 0.591227 | 1_4:-51420259 | Msa0168600:CDS |
| GGGAAGGAGATGATTGGAGA+AGG | 0.595385 | 1_4:+51420969 | None:intergenic |
| TCATAGATCATATATTGGAG+GGG | 0.604926 | 1_4:+51421216 | None:intergenic |
| ATAATTTCATGGAACAGAAG+TGG | 0.614186 | 1_4:-51421021 | Msa0168600:CDS |
| AGTCATAGATCATATATTGG+AGG | 0.618874 | 1_4:+51421214 | None:intergenic |
| GTTGAACAAGGAACTAGACT+AGG | 0.638387 | 1_4:-51420321 | Msa0168600:CDS |
| AATTCTTAGACATATGTACT+CGG | 0.641403 | 1_4:-51421172 | Msa0168600:exon |
| ACCTGCTAGAGATGGAGCAT+AGG | 0.655214 | 1_4:-51420491 | Msa0168600:CDS |
| AGAGGAAGTACATGAACCTG+AGG | 0.670115 | 1_4:-51420172 | Msa0168600:CDS |
| AAAGAGTGCTTGATGATGAA+GGG | 0.670867 | 1_4:-51420125 | Msa0168600:CDS |
| CATCTCTAGCAGGTACAGTG+TGG | 0.697521 | 1_4:+51420500 | None:intergenic |
| GTAGTTGGTGAATGAAGACA+GGG | 0.704135 | 1_4:+51420406 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATGTGATTATGAATTT+GGG | - | chr1_4:51420636-51420655 | Msa0168600:CDS | 15.0% |
| !! | AATTATGTGATTATGAATTT+GGG | - | chr1_4:51420636-51420655 | Msa0168600:CDS | 15.0% |
| !! | TAAAGTCATAGATCATATAT+TGG | + | chr1_4:51419688-51419707 | None:intergenic | 20.0% |
| !! | TCATAATCACATAATTCTAA+CGG | + | chr1_4:51420632-51420651 | None:intergenic | 20.0% |
| !! | GAATTATGTGATTATGAATT+TGG | - | chr1_4:51420635-51420654 | Msa0168600:CDS | 20.0% |
| !! | ATTATGTGATTATGAATTTG+GGG | - | chr1_4:51420637-51420656 | Msa0168600:CDS | 20.0% |
| !! | AATGTTTAGTATGAAATTTG+AGG | - | chr1_4:51420808-51420827 | Msa0168600:intron | 20.0% |
| !! | ATGTTTAGTATGAAATTTGA+GGG | - | chr1_4:51420809-51420828 | Msa0168600:intron | 20.0% |
| !! | AGAGAATTTGATATAAACAA+GGG | + | chr1_4:51421006-51421025 | None:intergenic | 20.0% |
| !! | TAAAGTCATAGATCATATAT+TGG | + | chr1_4:51419688-51419707 | None:intergenic | 20.0% |
| !! | TCATAATCACATAATTCTAA+CGG | + | chr1_4:51420632-51420651 | None:intergenic | 20.0% |
| !! | GAATTATGTGATTATGAATT+TGG | - | chr1_4:51420635-51420654 | Msa0168600:CDS | 20.0% |
| !! | ATTATGTGATTATGAATTTG+GGG | - | chr1_4:51420637-51420656 | Msa0168600:CDS | 20.0% |
| !! | AATGTTTAGTATGAAATTTG+AGG | - | chr1_4:51420808-51420827 | Msa0168600:intron | 20.0% |
| !! | ATGTTTAGTATGAAATTTGA+GGG | - | chr1_4:51420809-51420828 | Msa0168600:intron | 20.0% |
| !! | AGAGAATTTGATATAAACAA+GGG | + | chr1_4:51421006-51421025 | None:intergenic | 20.0% |
| ! | AATTCTTAGACATATGTACT+CGG | - | chr1_4:51419724-51419743 | Msa0168600:intron | 25.0% |
| ! | TTCTGTTCCATGAAATTATA+TGG | + | chr1_4:51419874-51419893 | None:intergenic | 25.0% |
| !! | TTATTGTGTTTGAAGTATCT+GGG | + | chr1_4:51419950-51419969 | None:intergenic | 25.0% |
| !! | ATTATTGTGTTTGAAGTATC+TGG | + | chr1_4:51419951-51419970 | None:intergenic | 25.0% |
| !! | TTACAGTTCAAATTTGTTCT+CGG | - | chr1_4:51420106-51420125 | Msa0168600:CDS | 25.0% |
| !! | TGTGTTATACAATATTTTGC+AGG | - | chr1_4:51420157-51420176 | Msa0168600:CDS | 25.0% |
| !! | GTGTTATACAATATTTTGCA+GGG | - | chr1_4:51420158-51420177 | Msa0168600:CDS | 25.0% |
| ! | AAAAATTGATCCAGATAGAT+GGG | - | chr1_4:51420187-51420206 | Msa0168600:CDS | 25.0% |
| !! | AAGTCAATGTTTTACTTCAA+AGG | - | chr1_4:51420952-51420971 | Msa0168600:CDS | 25.0% |
| ! | GAGAGAATTTGATATAAACA+AGG | + | chr1_4:51421007-51421026 | None:intergenic | 25.0% |
| ! | ATCTGTCATTATTTATGTCA+AGG | - | chr1_4:51421091-51421110 | Msa0168600:CDS | 25.0% |
| ! | AGGTAATACAAAATTACAAC+AGG | + | chr1_4:51421178-51421197 | None:intergenic | 25.0% |
| ! | ATTACTCAGAAGATATATGA+TGG | - | chr1_4:51421210-51421229 | Msa0168600:five_prime_UTR | 25.0% |
| ! | AATTCTTAGACATATGTACT+CGG | - | chr1_4:51419724-51419743 | Msa0168600:intron | 25.0% |
| ! | TTCTGTTCCATGAAATTATA+TGG | + | chr1_4:51419874-51419893 | None:intergenic | 25.0% |
| !! | TTATTGTGTTTGAAGTATCT+GGG | + | chr1_4:51419950-51419969 | None:intergenic | 25.0% |
| !! | ATTATTGTGTTTGAAGTATC+TGG | + | chr1_4:51419951-51419970 | None:intergenic | 25.0% |
| !! | TTACAGTTCAAATTTGTTCT+CGG | - | chr1_4:51420106-51420125 | Msa0168600:CDS | 25.0% |
| !! | TGTGTTATACAATATTTTGC+AGG | - | chr1_4:51420157-51420176 | Msa0168600:CDS | 25.0% |
| !! | GTGTTATACAATATTTTGCA+GGG | - | chr1_4:51420158-51420177 | Msa0168600:CDS | 25.0% |
| ! | AAAAATTGATCCAGATAGAT+GGG | - | chr1_4:51420187-51420206 | Msa0168600:CDS | 25.0% |
| !! | AAGTCAATGTTTTACTTCAA+AGG | - | chr1_4:51420952-51420971 | Msa0168600:CDS | 25.0% |
| ! | GAGAGAATTTGATATAAACA+AGG | + | chr1_4:51421007-51421026 | None:intergenic | 25.0% |
| ! | ATCTGTCATTATTTATGTCA+AGG | - | chr1_4:51421091-51421110 | Msa0168600:CDS | 25.0% |
| ! | AGGTAATACAAAATTACAAC+AGG | + | chr1_4:51421178-51421197 | None:intergenic | 25.0% |
| ! | ATTACTCAGAAGATATATGA+TGG | - | chr1_4:51421210-51421229 | Msa0168600:five_prime_UTR | 25.0% |
| TCATAGATCATATATTGGAG+GGG | + | chr1_4:51419683-51419702 | None:intergenic | 30.0% | |
| GTCATAGATCATATATTGGA+GGG | + | chr1_4:51419684-51419703 | None:intergenic | 30.0% | |
| AGTCATAGATCATATATTGG+AGG | + | chr1_4:51419685-51419704 | None:intergenic | 30.0% | |
| ATTTCAACAAGTCCTTCATT+TGG | + | chr1_4:51419794-51419813 | None:intergenic | 30.0% | |
| !! | TCAAATGTTTTTGTGAGGAA+TGG | + | chr1_4:51419827-51419846 | None:intergenic | 30.0% |
| !! | CTACATCAAATGTTTTTGTG+AGG | + | chr1_4:51419832-51419851 | None:intergenic | 30.0% |
| GTACCAACCATATAATTTCA+TGG | - | chr1_4:51419864-51419883 | Msa0168600:intron | 30.0% | |
| GTTCCATGAAATTATATGGT+TGG | + | chr1_4:51419870-51419889 | None:intergenic | 30.0% | |
| ATAATTTCATGGAACAGAAG+TGG | - | chr1_4:51419875-51419894 | Msa0168600:intron | 30.0% | |
| !! | TTGTTTTCTCATACTGATTG+TGG | - | chr1_4:51420131-51420150 | Msa0168600:CDS | 30.0% |
| GAAAAATTGATCCAGATAGA+TGG | - | chr1_4:51420186-51420205 | Msa0168600:CDS | 30.0% | |
| CAAATGAAAGATTCCTAAGA+GGG | - | chr1_4:51420216-51420235 | Msa0168600:CDS | 30.0% | |
| CCAAAACAACCAATTTCAAT+AGG | + | chr1_4:51420290-51420309 | None:intergenic | 30.0% | |
| ! | CCTATTGAAATTGGTTGTTT+TGG | - | chr1_4:51420287-51420306 | Msa0168600:CDS | 30.0% |
| ACAACAGAAAGAGAAGAAAA+AGG | - | chr1_4:51420511-51420530 | Msa0168600:CDS | 30.0% | |
| !!! | AAGCTTTCTCTTTTTTGTCA+TGG | + | chr1_4:51420555-51420574 | None:intergenic | 30.0% |
| TCATTGTTATCTTCAGAAGT+TGG | + | chr1_4:51420848-51420867 | None:intergenic | 30.0% | |
| TCATGTTTCTTGTGTTTGAT+TGG | - | chr1_4:51421025-51421044 | Msa0168600:CDS | 30.0% | |
| CATGTTTCTTGTGTTTGATT+GGG | - | chr1_4:51421026-51421045 | Msa0168600:CDS | 30.0% | |
| TTATTTATGTCAAGGACTCA+AGG | - | chr1_4:51421099-51421118 | Msa0168600:CDS | 30.0% | |
| CATATACATATATAGCTTCC+TGG | + | chr1_4:51421141-51421160 | None:intergenic | 30.0% | |
| TGAGTAATCTACATTCATCA+AGG | + | chr1_4:51421198-51421217 | None:intergenic | 30.0% | |
| TCATAGATCATATATTGGAG+GGG | + | chr1_4:51419683-51419702 | None:intergenic | 30.0% | |
| GTCATAGATCATATATTGGA+GGG | + | chr1_4:51419684-51419703 | None:intergenic | 30.0% | |
| AGTCATAGATCATATATTGG+AGG | + | chr1_4:51419685-51419704 | None:intergenic | 30.0% | |
| ATTTCAACAAGTCCTTCATT+TGG | + | chr1_4:51419794-51419813 | None:intergenic | 30.0% | |
| !! | TCAAATGTTTTTGTGAGGAA+TGG | + | chr1_4:51419827-51419846 | None:intergenic | 30.0% |
| !! | CTACATCAAATGTTTTTGTG+AGG | + | chr1_4:51419832-51419851 | None:intergenic | 30.0% |
| GTACCAACCATATAATTTCA+TGG | - | chr1_4:51419864-51419883 | Msa0168600:intron | 30.0% | |
| GTTCCATGAAATTATATGGT+TGG | + | chr1_4:51419870-51419889 | None:intergenic | 30.0% | |
| ATAATTTCATGGAACAGAAG+TGG | - | chr1_4:51419875-51419894 | Msa0168600:intron | 30.0% | |
| !! | TTGTTTTCTCATACTGATTG+TGG | - | chr1_4:51420131-51420150 | Msa0168600:CDS | 30.0% |
| GAAAAATTGATCCAGATAGA+TGG | - | chr1_4:51420186-51420205 | Msa0168600:CDS | 30.0% | |
| CAAATGAAAGATTCCTAAGA+GGG | - | chr1_4:51420216-51420235 | Msa0168600:CDS | 30.0% | |
| CCAAAACAACCAATTTCAAT+AGG | + | chr1_4:51420290-51420309 | None:intergenic | 30.0% | |
| ! | CCTATTGAAATTGGTTGTTT+TGG | - | chr1_4:51420287-51420306 | Msa0168600:CDS | 30.0% |
| ACAACAGAAAGAGAAGAAAA+AGG | - | chr1_4:51420511-51420530 | Msa0168600:CDS | 30.0% | |
| !!! | AAGCTTTCTCTTTTTTGTCA+TGG | + | chr1_4:51420555-51420574 | None:intergenic | 30.0% |
| TCATTGTTATCTTCAGAAGT+TGG | + | chr1_4:51420848-51420867 | None:intergenic | 30.0% | |
| TCATGTTTCTTGTGTTTGAT+TGG | - | chr1_4:51421025-51421044 | Msa0168600:CDS | 30.0% | |
| CATGTTTCTTGTGTTTGATT+GGG | - | chr1_4:51421026-51421045 | Msa0168600:CDS | 30.0% | |
| TTATTTATGTCAAGGACTCA+AGG | - | chr1_4:51421099-51421118 | Msa0168600:CDS | 30.0% | |
| CATATACATATATAGCTTCC+TGG | + | chr1_4:51421141-51421160 | None:intergenic | 30.0% | |
| TGAGTAATCTACATTCATCA+AGG | + | chr1_4:51421198-51421217 | None:intergenic | 30.0% | |
| AACAAGTCCTTCATTTGGTT+GGG | + | chr1_4:51419789-51419808 | None:intergenic | 35.0% | |
| TGATCCTAATGTCTCTATCT+AGG | - | chr1_4:51420049-51420068 | Msa0168600:CDS | 35.0% | |
| TTTGCAAATTCCCATCTATC+TGG | + | chr1_4:51420200-51420219 | None:intergenic | 35.0% | |
| GCAAATGAAAGATTCCTAAG+AGG | - | chr1_4:51420215-51420234 | Msa0168600:CDS | 35.0% | |
| GACATCTATTGAGGAACATA+AGG | - | chr1_4:51420243-51420262 | Msa0168600:CDS | 35.0% | |
| AGGAACATAAGGAGAAAGAA+GGG | - | chr1_4:51420254-51420273 | Msa0168600:CDS | 35.0% | |
| ATGCAGAAATCGATCGTTTA+AGG | - | chr1_4:51420315-51420334 | Msa0168600:CDS | 35.0% | |
| TCTTCTCTTTCTGTTGTAGT+TGG | + | chr1_4:51420508-51420527 | None:intergenic | 35.0% | |
| !! | AAGAGAAAGCTTGTTGAACA+AGG | - | chr1_4:51420563-51420582 | Msa0168600:CDS | 35.0% |
| AATGTTAGCTATGGAAATGC+AGG | - | chr1_4:51420673-51420692 | Msa0168600:CDS | 35.0% | |
| !! | TTTTGGAAGGGGGAAAATAA+TGG | - | chr1_4:51420697-51420716 | Msa0168600:CDS | 35.0% |
| !! | GGGGAAAATAATGGATAAAG+AGG | - | chr1_4:51420706-51420725 | Msa0168600:CDS | 35.0% |
| ACTAGAATCACAAGAGAAGA+TGG | - | chr1_4:51420748-51420767 | Msa0168600:intron | 35.0% | |
| !! | AAAGAGTGCTTGATGATGAA+GGG | - | chr1_4:51420771-51420790 | Msa0168600:intron | 35.0% |
| AACCACTGAGTCAAGAATTT+AGG | - | chr1_4:51420888-51420907 | Msa0168600:intron | 35.0% | |
| ATCCTAAATTCTTGACTCAG+TGG | + | chr1_4:51420893-51420912 | None:intergenic | 35.0% | |
| TTTCTTGTGTTTGATTGGGT+AGG | - | chr1_4:51421030-51421049 | Msa0168600:CDS | 35.0% | |
| GCTATCAAAGAATCTTGTTC+TGG | + | chr1_4:51421068-51421087 | None:intergenic | 35.0% | |
| !!! | GGTTCAATTTTTTTACCACC+AGG | - | chr1_4:51421120-51421139 | Msa0168600:CDS | 35.0% |
| ATACATATATAGCTTCCTGG+TGG | + | chr1_4:51421138-51421157 | None:intergenic | 35.0% | |
| AACAAGTCCTTCATTTGGTT+GGG | + | chr1_4:51419789-51419808 | None:intergenic | 35.0% | |
| TGATCCTAATGTCTCTATCT+AGG | - | chr1_4:51420049-51420068 | Msa0168600:CDS | 35.0% | |
| TTTGCAAATTCCCATCTATC+TGG | + | chr1_4:51420200-51420219 | None:intergenic | 35.0% | |
| GCAAATGAAAGATTCCTAAG+AGG | - | chr1_4:51420215-51420234 | Msa0168600:CDS | 35.0% | |
| GACATCTATTGAGGAACATA+AGG | - | chr1_4:51420243-51420262 | Msa0168600:CDS | 35.0% | |
| AGGAACATAAGGAGAAAGAA+GGG | - | chr1_4:51420254-51420273 | Msa0168600:CDS | 35.0% | |
| ATGCAGAAATCGATCGTTTA+AGG | - | chr1_4:51420315-51420334 | Msa0168600:CDS | 35.0% | |
| TCTTCTCTTTCTGTTGTAGT+TGG | + | chr1_4:51420508-51420527 | None:intergenic | 35.0% | |
| !! | AAGAGAAAGCTTGTTGAACA+AGG | - | chr1_4:51420563-51420582 | Msa0168600:CDS | 35.0% |
| AATGTTAGCTATGGAAATGC+AGG | - | chr1_4:51420673-51420692 | Msa0168600:CDS | 35.0% | |
| !! | TTTTGGAAGGGGGAAAATAA+TGG | - | chr1_4:51420697-51420716 | Msa0168600:CDS | 35.0% |
| !! | GGGGAAAATAATGGATAAAG+AGG | - | chr1_4:51420706-51420725 | Msa0168600:CDS | 35.0% |
| ACTAGAATCACAAGAGAAGA+TGG | - | chr1_4:51420748-51420767 | Msa0168600:intron | 35.0% | |
| !! | AAAGAGTGCTTGATGATGAA+GGG | - | chr1_4:51420771-51420790 | Msa0168600:intron | 35.0% |
| AACCACTGAGTCAAGAATTT+AGG | - | chr1_4:51420888-51420907 | Msa0168600:intron | 35.0% | |
| ATCCTAAATTCTTGACTCAG+TGG | + | chr1_4:51420893-51420912 | None:intergenic | 35.0% | |
| TTTCTTGTGTTTGATTGGGT+AGG | - | chr1_4:51421030-51421049 | Msa0168600:CDS | 35.0% | |
| GCTATCAAAGAATCTTGTTC+TGG | + | chr1_4:51421068-51421087 | None:intergenic | 35.0% | |
| !!! | GGTTCAATTTTTTTACCACC+AGG | - | chr1_4:51421120-51421139 | Msa0168600:CDS | 35.0% |
| ATACATATATAGCTTCCTGG+TGG | + | chr1_4:51421138-51421157 | None:intergenic | 35.0% | |
| CTCGGTGAAAGAAGAATACT+TGG | - | chr1_4:51419742-51419761 | Msa0168600:intron | 40.0% | |
| ACAAGTCCTTCATTTGGTTG+GGG | + | chr1_4:51419788-51419807 | None:intergenic | 40.0% | |
| CAACAAGTCCTTCATTTGGT+TGG | + | chr1_4:51419790-51419809 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGAGGAATGGTTG+TGG | + | chr1_4:51419821-51419840 | None:intergenic | 40.0% |
| TGTATCCCAAACCACAAAAC+TGG | + | chr1_4:51419903-51419922 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTATCTGGGA+AGG | + | chr1_4:51419946-51419965 | None:intergenic | 40.0% |
| CTGACCTAGATAGAGACATT+AGG | + | chr1_4:51420056-51420075 | None:intergenic | 40.0% | |
| ATAGATGTCTTTGCCCTCTT+AGG | + | chr1_4:51420232-51420251 | None:intergenic | 40.0% | |
| GAGGAACATAAGGAGAAAGA+AGG | - | chr1_4:51420253-51420272 | Msa0168600:CDS | 40.0% | |
| CCAATTTCAATAGGCTGAGA+AGG | + | chr1_4:51420281-51420300 | None:intergenic | 40.0% | |
| CCTTCTCAGCCTATTGAAAT+TGG | - | chr1_4:51420278-51420297 | Msa0168600:CDS | 40.0% | |
| AGATGGAGCATAGGTTAGAA+GGG | - | chr1_4:51420414-51420433 | Msa0168600:CDS | 40.0% | |
| !! | GTAGTTGGTGAATGAAGACA+GGG | + | chr1_4:51420493-51420512 | None:intergenic | 40.0% |
| !! | TGTAGTTGGTGAATGAAGAC+AGG | + | chr1_4:51420494-51420513 | None:intergenic | 40.0% |
| !!! | TCTCTTTTTTGTCATGGTCG+CGG | + | chr1_4:51420549-51420568 | None:intergenic | 40.0% |
| GTTGAACAAGGAACTAGACT+AGG | - | chr1_4:51420575-51420594 | Msa0168600:CDS | 40.0% | |
| CAAGGAACTAGACTAGGTAT+TGG | - | chr1_4:51420581-51420600 | Msa0168600:CDS | 40.0% | |
| ! | TGATTATGAATTTGGGGCGT+CGG | - | chr1_4:51420643-51420662 | Msa0168600:CDS | 40.0% |
| GGAGTTGGAAATGTTAGCTA+TGG | - | chr1_4:51420664-51420683 | Msa0168600:CDS | 40.0% | |
| ! | GCTATGGAAATGCAGGTTTT+TGG | - | chr1_4:51420680-51420699 | Msa0168600:CDS | 40.0% |
| !! | TGGAAATGCAGGTTTTTGGA+AGG | - | chr1_4:51420684-51420703 | Msa0168600:CDS | 40.0% |
| !! | GGAAATGCAGGTTTTTGGAA+GGG | - | chr1_4:51420685-51420704 | Msa0168600:CDS | 40.0% |
| !! | GAAATGCAGGTTTTTGGAAG+GGG | - | chr1_4:51420686-51420705 | Msa0168600:CDS | 40.0% |
| !! | AAATGCAGGTTTTTGGAAGG+GGG | - | chr1_4:51420687-51420706 | Msa0168600:CDS | 40.0% |
| !! | GAAAGAGTGCTTGATGATGA+AGG | - | chr1_4:51420770-51420789 | Msa0168600:intron | 40.0% |
| CTCGGTGAAAGAAGAATACT+TGG | - | chr1_4:51419742-51419761 | Msa0168600:intron | 40.0% | |
| ACAAGTCCTTCATTTGGTTG+GGG | + | chr1_4:51419788-51419807 | None:intergenic | 40.0% | |
| CAACAAGTCCTTCATTTGGT+TGG | + | chr1_4:51419790-51419809 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGAGGAATGGTTG+TGG | + | chr1_4:51419821-51419840 | None:intergenic | 40.0% |
| TGTATCCCAAACCACAAAAC+TGG | + | chr1_4:51419903-51419922 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTATCTGGGA+AGG | + | chr1_4:51419946-51419965 | None:intergenic | 40.0% |
| CTGACCTAGATAGAGACATT+AGG | + | chr1_4:51420056-51420075 | None:intergenic | 40.0% | |
| ATAGATGTCTTTGCCCTCTT+AGG | + | chr1_4:51420232-51420251 | None:intergenic | 40.0% | |
| GAGGAACATAAGGAGAAAGA+AGG | - | chr1_4:51420253-51420272 | Msa0168600:CDS | 40.0% | |
| CCAATTTCAATAGGCTGAGA+AGG | + | chr1_4:51420281-51420300 | None:intergenic | 40.0% | |
| CCTTCTCAGCCTATTGAAAT+TGG | - | chr1_4:51420278-51420297 | Msa0168600:CDS | 40.0% | |
| AGATGGAGCATAGGTTAGAA+GGG | - | chr1_4:51420414-51420433 | Msa0168600:CDS | 40.0% | |
| !! | GTAGTTGGTGAATGAAGACA+GGG | + | chr1_4:51420493-51420512 | None:intergenic | 40.0% |
| !! | TGTAGTTGGTGAATGAAGAC+AGG | + | chr1_4:51420494-51420513 | None:intergenic | 40.0% |
| !!! | TCTCTTTTTTGTCATGGTCG+CGG | + | chr1_4:51420549-51420568 | None:intergenic | 40.0% |
| GTTGAACAAGGAACTAGACT+AGG | - | chr1_4:51420575-51420594 | Msa0168600:CDS | 40.0% | |
| CAAGGAACTAGACTAGGTAT+TGG | - | chr1_4:51420581-51420600 | Msa0168600:CDS | 40.0% | |
| ! | TGATTATGAATTTGGGGCGT+CGG | - | chr1_4:51420643-51420662 | Msa0168600:CDS | 40.0% |
| GGAGTTGGAAATGTTAGCTA+TGG | - | chr1_4:51420664-51420683 | Msa0168600:CDS | 40.0% | |
| ! | GCTATGGAAATGCAGGTTTT+TGG | - | chr1_4:51420680-51420699 | Msa0168600:CDS | 40.0% |
| !! | TGGAAATGCAGGTTTTTGGA+AGG | - | chr1_4:51420684-51420703 | Msa0168600:CDS | 40.0% |
| !! | GGAAATGCAGGTTTTTGGAA+GGG | - | chr1_4:51420685-51420704 | Msa0168600:CDS | 40.0% |
| !! | GAAATGCAGGTTTTTGGAAG+GGG | - | chr1_4:51420686-51420705 | Msa0168600:CDS | 40.0% |
| !! | AAATGCAGGTTTTTGGAAGG+GGG | - | chr1_4:51420687-51420706 | Msa0168600:CDS | 40.0% |
| !! | GAAAGAGTGCTTGATGATGA+AGG | - | chr1_4:51420770-51420789 | Msa0168600:intron | 40.0% |
| !! | TGGCACCAGTTTTGTGGTTT+GGG | - | chr1_4:51419895-51419914 | Msa0168600:intron | 45.0% |
| GTATCTGGGAAGGAGATGAT+TGG | + | chr1_4:51419936-51419955 | None:intergenic | 45.0% | |
| GAGGGCAAAGACATCTATTG+AGG | - | chr1_4:51420234-51420253 | Msa0168600:CDS | 45.0% | |
| GAGATGGAGCATAGGTTAGA+AGG | - | chr1_4:51420413-51420432 | Msa0168600:CDS | 45.0% | |
| ! | AGAGGAAGTACATGAACCTG+AGG | - | chr1_4:51420724-51420743 | Msa0168600:intron | 45.0% |
| TCTTGTGATTCTAGTGCCTC+AGG | + | chr1_4:51420743-51420762 | None:intergenic | 45.0% | |
| !! | TGCTTGATGATGAAGGGTTC+TGG | - | chr1_4:51420777-51420796 | Msa0168600:intron | 45.0% |
| !! | GCTTGATGATGAAGGGTTCT+GGG | - | chr1_4:51420778-51420797 | Msa0168600:intron | 45.0% |
| !! | TGGCACCAGTTTTGTGGTTT+GGG | - | chr1_4:51419895-51419914 | Msa0168600:intron | 45.0% |
| GTATCTGGGAAGGAGATGAT+TGG | + | chr1_4:51419936-51419955 | None:intergenic | 45.0% | |
| GAGGGCAAAGACATCTATTG+AGG | - | chr1_4:51420234-51420253 | Msa0168600:CDS | 45.0% | |
| GAGATGGAGCATAGGTTAGA+AGG | - | chr1_4:51420413-51420432 | Msa0168600:CDS | 45.0% | |
| ! | AGAGGAAGTACATGAACCTG+AGG | - | chr1_4:51420724-51420743 | Msa0168600:intron | 45.0% |
| TCTTGTGATTCTAGTGCCTC+AGG | + | chr1_4:51420743-51420762 | None:intergenic | 45.0% | |
| !! | TGCTTGATGATGAAGGGTTC+TGG | - | chr1_4:51420777-51420796 | Msa0168600:intron | 45.0% |
| !! | GCTTGATGATGAAGGGTTCT+GGG | - | chr1_4:51420778-51420797 | Msa0168600:intron | 45.0% |
| AGTCCTTCATTTGGTTGGGG+TGG | + | chr1_4:51419785-51419804 | None:intergenic | 50.0% | |
| ! | CAGAAGTGGCACCAGTTTTG+TGG | - | chr1_4:51419889-51419908 | Msa0168600:intron | 50.0% |
| !! | GTGGCACCAGTTTTGTGGTT+TGG | - | chr1_4:51419894-51419913 | Msa0168600:intron | 50.0% |
| GGGAAGGAGATGATTGGAGA+AGG | + | chr1_4:51419930-51419949 | None:intergenic | 50.0% | |
| CATCTCTAGCAGGTACAGTG+TGG | + | chr1_4:51420399-51420418 | None:intergenic | 50.0% | |
| CACACTGTACCTGCTAGAGA+TGG | - | chr1_4:51420397-51420416 | Msa0168600:CDS | 50.0% | |
| ACCTGCTAGAGATGGAGCAT+AGG | - | chr1_4:51420405-51420424 | Msa0168600:CDS | 50.0% | |
| ACCTATGCTCCATCTCTAGC+AGG | + | chr1_4:51420409-51420428 | None:intergenic | 50.0% | |
| TTGATTGGGTAGGTTGCTGC+TGG | - | chr1_4:51421040-51421059 | Msa0168600:CDS | 50.0% | |
| AGTCCTTCATTTGGTTGGGG+TGG | + | chr1_4:51419785-51419804 | None:intergenic | 50.0% | |
| ! | CAGAAGTGGCACCAGTTTTG+TGG | - | chr1_4:51419889-51419908 | Msa0168600:intron | 50.0% |
| !! | GTGGCACCAGTTTTGTGGTT+TGG | - | chr1_4:51419894-51419913 | Msa0168600:intron | 50.0% |
| GGGAAGGAGATGATTGGAGA+AGG | + | chr1_4:51419930-51419949 | None:intergenic | 50.0% | |
| CATCTCTAGCAGGTACAGTG+TGG | + | chr1_4:51420399-51420418 | None:intergenic | 50.0% | |
| CACACTGTACCTGCTAGAGA+TGG | - | chr1_4:51420397-51420416 | Msa0168600:CDS | 50.0% | |
| ACCTGCTAGAGATGGAGCAT+AGG | - | chr1_4:51420405-51420424 | Msa0168600:CDS | 50.0% | |
| ACCTATGCTCCATCTCTAGC+AGG | + | chr1_4:51420409-51420428 | None:intergenic | 50.0% | |
| TTGATTGGGTAGGTTGCTGC+TGG | - | chr1_4:51421040-51421059 | Msa0168600:CDS | 50.0% | |
| ! | TCATTTGGTTGGGGTGGTGG+TGG | + | chr1_4:51419779-51419798 | None:intergenic | 55.0% |
| CCTTCATTTGGTTGGGGTGG+TGG | + | chr1_4:51419782-51419801 | None:intergenic | 55.0% | |
| CCACCACCCCAACCAAATGA+AGG | - | chr1_4:51419779-51419798 | Msa0168600:intron | 55.0% | |
| !! | TGAATTTGGGGCGTCGGAGT+TGG | - | chr1_4:51420649-51420668 | Msa0168600:CDS | 55.0% |
| ! | TCATTTGGTTGGGGTGGTGG+TGG | + | chr1_4:51419779-51419798 | None:intergenic | 55.0% |
| CCTTCATTTGGTTGGGGTGG+TGG | + | chr1_4:51419782-51419801 | None:intergenic | 55.0% | |
| CCACCACCCCAACCAAATGA+AGG | - | chr1_4:51419779-51419798 | Msa0168600:intron | 55.0% | |
| !! | TGAATTTGGGGCGTCGGAGT+TGG | - | chr1_4:51420649-51420668 | Msa0168600:CDS | 55.0% |
| !! | TGGGGTGGTGGTGGAATCGT+TGG | + | chr1_4:51419770-51419789 | None:intergenic | 60.0% |
| !! | TGGGGTGGTGGTGGAATCGT+TGG | + | chr1_4:51419770-51419789 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 51419646 | 51421272 | 51419646 | ID=Msa0168600;Name=Msa0168600 |
| chr1_4 | mRNA | 51419646 | 51421272 | 51419646 | ID=Msa0168600-mRNA-1;Parent=Msa0168600;Name=Msa0168600-mRNA-1;_AED=0.21;_eAED=0.22;_QI=91|0.33|0.25|1|1|1|4|0|382 |
| chr1_4 | exon | 51419646 | 51419708 | 51419646 | ID=Msa0168600-mRNA-1:exon:15144;Parent=Msa0168600-mRNA-1 |
| chr1_4 | exon | 51419798 | 51419866 | 51419798 | ID=Msa0168600-mRNA-1:exon:15143;Parent=Msa0168600-mRNA-1 |
| chr1_4 | exon | 51419990 | 51420739 | 51419990 | ID=Msa0168600-mRNA-1:exon:15142;Parent=Msa0168600-mRNA-1 |
| chr1_4 | exon | 51420915 | 51421272 | 51420915 | ID=Msa0168600-mRNA-1:exon:15141;Parent=Msa0168600-mRNA-1 |
| chr1_4 | five_prime_UTR | 51421182 | 51421272 | 51421182 | ID=Msa0168600-mRNA-1:five_prime_utr;Parent=Msa0168600-mRNA-1 |
| chr1_4 | CDS | 51420915 | 51421181 | 51420915 | ID=Msa0168600-mRNA-1:cds;Parent=Msa0168600-mRNA-1 |
| chr1_4 | CDS | 51419990 | 51420739 | 51419990 | ID=Msa0168600-mRNA-1:cds;Parent=Msa0168600-mRNA-1 |
| chr1_4 | CDS | 51419798 | 51419866 | 51419798 | ID=Msa0168600-mRNA-1:cds;Parent=Msa0168600-mRNA-1 |
| chr1_4 | CDS | 51419646 | 51419708 | 51419646 | ID=Msa0168600-mRNA-1:cds;Parent=Msa0168600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
