Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124220 | sp|Q9LUH8|HFA6B_ARATH | 48.358 | 335 | 133 | 8 | 10 | 305 | 41 | 374 | 7.73e-92 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124220 | G7ICS1 | 86.234 | 385 | 39 | 5 | 1 | 384 | 1 | 372 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0124220 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028510 | Msa0124220 | 0.845872 | 3.095932e-59 | -8.615850e-47 |
| Msa0124220 | Msa0168600 | 0.803330 | 3.669848e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124220 | MtrunA17_Chr1g0185131 | 88.439 | 346 | 32 | 4 | 1 | 345 | 4 | 342 | 0.0 | 601 |
| Msa0124220 | MtrunA17_Chr7g0260331 | 55.331 | 347 | 114 | 9 | 1 | 320 | 4 | 336 | 2.25e-105 | 315 |
| Msa0124220 | MtrunA17_Chr1g0204741 | 48.243 | 313 | 121 | 8 | 17 | 316 | 27 | 311 | 3.07e-80 | 249 |
| Msa0124220 | MtrunA17_Chr3g0135831 | 45.000 | 300 | 150 | 6 | 17 | 305 | 33 | 328 | 3.91e-75 | 238 |
| Msa0124220 | MtrunA17_Chr4g0039891 | 50.230 | 217 | 94 | 2 | 22 | 226 | 4 | 218 | 9.87e-67 | 219 |
| Msa0124220 | MtrunA17_Chr5g0410881 | 50.685 | 219 | 88 | 5 | 28 | 230 | 30 | 244 | 7.19e-66 | 217 |
| Msa0124220 | MtrunA17_Chr4g0071051 | 46.875 | 224 | 106 | 4 | 17 | 233 | 88 | 305 | 2.40e-62 | 206 |
| Msa0124220 | MtrunA17_Chr6g0467041 | 44.000 | 200 | 104 | 4 | 30 | 226 | 22 | 216 | 2.01e-47 | 164 |
| Msa0124220 | MtrunA17_Chr8g0379701 | 38.911 | 257 | 132 | 7 | 30 | 265 | 12 | 264 | 2.21e-47 | 166 |
| Msa0124220 | MtrunA17_Chr8g0392001 | 40.164 | 244 | 127 | 5 | 30 | 254 | 22 | 265 | 2.37e-47 | 165 |
| Msa0124220 | MtrunA17_Chr8g0378061 | 44.828 | 203 | 96 | 5 | 31 | 226 | 23 | 216 | 2.39e-47 | 168 |
| Msa0124220 | MtrunA17_Chr6g0485571 | 40.625 | 224 | 124 | 4 | 30 | 244 | 11 | 234 | 1.62e-45 | 159 |
| Msa0124220 | MtrunA17_Chr2g0330821 | 43.158 | 190 | 102 | 3 | 20 | 207 | 73 | 258 | 1.97e-44 | 157 |
| Msa0124220 | MtrunA17_Chr5g0397881 | 65.263 | 95 | 33 | 0 | 28 | 122 | 22 | 116 | 3.93e-42 | 151 |
| Msa0124220 | MtrunA17_Chr6g0472421 | 63.158 | 95 | 35 | 0 | 28 | 122 | 31 | 125 | 9.49e-41 | 147 |
| Msa0124220 | MtrunA17_Chr1g0203601 | 63.158 | 95 | 35 | 0 | 28 | 122 | 16 | 110 | 6.06e-40 | 144 |
| Msa0124220 | MtrunA17_Chr5g0402291 | 42.286 | 175 | 62 | 3 | 28 | 163 | 7 | 181 | 7.89e-40 | 143 |
| Msa0124220 | MtrunA17_Chr5g0441531 | 43.275 | 171 | 71 | 3 | 28 | 173 | 23 | 192 | 1.76e-39 | 141 |
| Msa0124220 | MtrunA17_Chr2g0284481 | 40.659 | 182 | 93 | 3 | 30 | 199 | 15 | 193 | 3.06e-39 | 144 |
| Msa0124220 | MtrunA17_Chr3g0134031 | 65.657 | 99 | 33 | 1 | 28 | 126 | 22 | 119 | 1.20e-38 | 142 |
| Msa0124220 | MtrunA17_Chr7g0257331 | 42.246 | 187 | 79 | 3 | 21 | 188 | 9 | 185 | 1.45e-38 | 138 |
| Msa0124220 | MtrunA17_Chr4g0047421 | 37.640 | 178 | 97 | 3 | 28 | 198 | 31 | 201 | 9.32e-34 | 124 |
| Msa0124220 | MtrunA17_Chr8g0375041 | 40.884 | 181 | 86 | 4 | 25 | 185 | 4 | 183 | 3.00e-33 | 124 |
| Msa0124220 | MtrunA17_Chr1g0179311 | 41.497 | 147 | 79 | 3 | 87 | 229 | 11 | 154 | 5.49e-28 | 113 |
| Msa0124220 | MtrunA17_Chr1g0179321 | 64.384 | 73 | 26 | 0 | 17 | 89 | 36 | 108 | 2.34e-24 | 96.3 |
| Msa0124220 | MtrunA17_Chr2g0330841 | 36.429 | 140 | 82 | 3 | 90 | 226 | 41 | 176 | 3.19e-21 | 94.4 |
| Msa0124220 | MtrunA17_Chr4g0023771 | 55.738 | 61 | 26 | 1 | 30 | 89 | 15 | 75 | 1.07e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124220 | AT3G22830.1 | 48.358 | 335 | 133 | 8 | 10 | 305 | 41 | 374 | 7.86e-93 | 284 |
| Msa0124220 | AT3G51910.1 | 52.962 | 287 | 90 | 9 | 21 | 305 | 20 | 263 | 4.06e-86 | 263 |
| Msa0124220 | AT3G63350.1 | 44.136 | 324 | 125 | 7 | 15 | 336 | 13 | 282 | 2.32e-79 | 246 |
| Msa0124220 | AT2G26150.1 | 50.230 | 217 | 102 | 2 | 17 | 227 | 31 | 247 | 9.51e-72 | 228 |
| Msa0124220 | AT2G26150.4 | 50.230 | 217 | 102 | 2 | 17 | 227 | 31 | 247 | 9.51e-72 | 228 |
| Msa0124220 | AT1G32330.2 | 50.472 | 212 | 78 | 3 | 15 | 205 | 22 | 227 | 2.10e-64 | 213 |
| Msa0124220 | AT1G32330.1 | 50.472 | 212 | 78 | 3 | 15 | 205 | 22 | 227 | 2.26e-64 | 213 |
| Msa0124220 | AT5G43840.1 | 41.522 | 289 | 142 | 7 | 17 | 294 | 6 | 278 | 7.58e-64 | 206 |
| Msa0124220 | AT4G17750.1 | 43.561 | 264 | 109 | 5 | 12 | 244 | 31 | 285 | 1.03e-62 | 209 |
| Msa0124220 | AT5G16820.1 | 49.123 | 228 | 95 | 4 | 11 | 226 | 16 | 234 | 1.73e-61 | 206 |
| Msa0124220 | AT5G16820.2 | 49.123 | 228 | 95 | 4 | 11 | 226 | 16 | 234 | 1.73e-61 | 206 |
| Msa0124220 | AT3G02990.1 | 48.325 | 209 | 93 | 4 | 30 | 226 | 23 | 228 | 1.20e-58 | 197 |
| Msa0124220 | AT5G03720.2 | 48.500 | 200 | 98 | 3 | 30 | 225 | 55 | 253 | 3.22e-56 | 190 |
| Msa0124220 | AT5G03720.1 | 48.500 | 200 | 98 | 3 | 30 | 225 | 55 | 253 | 3.22e-56 | 190 |
| Msa0124220 | AT1G67970.1 | 46.296 | 216 | 106 | 4 | 30 | 238 | 19 | 231 | 3.07e-54 | 184 |
| Msa0124220 | AT5G54070.1 | 41.089 | 202 | 112 | 3 | 30 | 228 | 71 | 268 | 8.24e-50 | 171 |
| Msa0124220 | AT4G13980.1 | 43.284 | 201 | 107 | 3 | 31 | 228 | 24 | 220 | 1.68e-49 | 173 |
| Msa0124220 | AT3G24520.1 | 40.909 | 198 | 100 | 2 | 30 | 227 | 17 | 197 | 1.04e-45 | 160 |
| Msa0124220 | AT4G18880.1 | 45.455 | 187 | 95 | 2 | 20 | 199 | 5 | 191 | 1.40e-40 | 148 |
| Msa0124220 | AT1G46264.1 | 40.265 | 226 | 79 | 5 | 21 | 192 | 25 | 248 | 3.04e-40 | 146 |
| Msa0124220 | AT4G36990.1 | 64.894 | 94 | 33 | 0 | 28 | 121 | 12 | 105 | 9.86e-40 | 143 |
| Msa0124220 | AT5G62020.1 | 62.105 | 95 | 36 | 0 | 28 | 122 | 21 | 115 | 1.30e-38 | 140 |
| Msa0124220 | AT4G11660.1 | 62.626 | 99 | 36 | 1 | 28 | 126 | 57 | 154 | 2.72e-38 | 141 |
| Msa0124220 | AT5G45710.3 | 37.143 | 210 | 126 | 2 | 30 | 233 | 13 | 222 | 4.94e-38 | 140 |
| Msa0124220 | AT5G45710.1 | 37.143 | 210 | 126 | 2 | 30 | 233 | 13 | 222 | 4.94e-38 | 140 |
| Msa0124220 | AT2G41690.1 | 52.381 | 126 | 46 | 2 | 28 | 140 | 38 | 162 | 7.78e-36 | 131 |
| Msa0124220 | AT2G26150.3 | 44.056 | 143 | 74 | 2 | 90 | 226 | 49 | 191 | 1.94e-32 | 124 |
| Msa0124220 | AT2G26150.2 | 44.056 | 143 | 74 | 2 | 90 | 226 | 49 | 191 | 1.94e-32 | 124 |
| Msa0124220 | AT4G18870.1 | 52.809 | 89 | 37 | 2 | 31 | 117 | 14 | 99 | 4.05e-23 | 98.6 |
| Msa0124220 | AT4G18870.1 | 46.591 | 88 | 47 | 0 | 30 | 117 | 146 | 233 | 3.31e-21 | 93.2 |
| Msa0124220 | AT1G77570.1 | 35.227 | 88 | 54 | 2 | 31 | 115 | 27 | 114 | 1.18e-11 | 62.8 |
Find 83 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTCCTTGTTGGGAATT+AGG | 0.117532 | 1_3:-51882099 | None:intergenic |
| ATGCAGAAATTGATCGTTTA+AGG | 0.140595 | 1_3:+51882136 | Msa0124220:CDS |
| ATTATTGTGTTTGAAGTATC+TGG | 0.159629 | 1_3:-51881770 | None:intergenic |
| GAGTTACGTGATTATGAATT+TGG | 0.206462 | 1_3:+51882456 | Msa0124220:CDS |
| TTCACTCAGTTATGCTTTCT+AGG | 0.232599 | 1_3:-51883064 | None:intergenic |
| TTCTGTTCCATGAAATTATA+TGG | 0.235121 | 1_3:-51881693 | None:intergenic |
| CAACAAGGACAAGGTTGTTT+TGG | 0.253139 | 1_3:+51882108 | Msa0124220:CDS |
| AACAAGTCCTTCATTTGGTT+GGG | 0.266336 | 1_3:-51881608 | None:intergenic |
| CTTGTTTATTCTGATGAGTT+TGG | 0.282499 | 1_3:+51883254 | Msa0124220:three_prime_UTR |
| AACCACTGAGTCAAGAATTT+AGG | 0.293001 | 1_3:+51882709 | Msa0124220:CDS |
| TTTGCAAATTCCCATCTATC+TGG | 0.293795 | 1_3:-51882003 | None:intergenic |
| AGTTACGTGATTATGAATTT+GGG | 0.305707 | 1_3:+51882457 | Msa0124220:CDS |
| CCTTCATTTGGTTGGGGTGG+TGG | 0.306285 | 1_3:-51881601 | None:intergenic |
| ACAATAAGATAAGTATTATA+TGG | 0.316234 | 1_3:-51883141 | None:intergenic |
| AGTCATAGATCATAGATTAA+AGG | 0.329369 | 1_3:-51881504 | None:intergenic |
| ACAACAGAAAGAGAAGAAAA+AGG | 0.330208 | 1_3:+51882332 | Msa0124220:CDS |
| GCTATCAAAGAATCTTGTTC+TGG | 0.330741 | 1_3:-51882886 | None:intergenic |
| TCTTCTCTTTCTGTTGTAGT+TGG | 0.332869 | 1_3:-51882326 | None:intergenic |
| GTCATAGATCATAGATTAAA+GGG | 0.344975 | 1_3:-51881503 | None:intergenic |
| CAGATGGAGCAAAGGTTAGA+AGG | 0.354438 | 1_3:+51882234 | Msa0124220:CDS |
| TGCTTGATGATGAAGGGTTC+TGG | 0.373815 | 1_3:+51882598 | Msa0124220:CDS |
| TCATTTGGTTGGGGTGGTGG+TGG | 0.381814 | 1_3:-51881598 | None:intergenic |
| CCTTGTTGGGAATTAGGAAT+AGG | 0.386492 | 1_3:-51882093 | None:intergenic |
| ATTTCAACAAGTCCTTCATT+TGG | 0.388996 | 1_3:-51881613 | None:intergenic |
| GTACCAACCATATAATTTCA+TGG | 0.396015 | 1_3:+51881686 | Msa0124220:CDS |
| CAAAACAACCTTGTCCTTGT+TGG | 0.397714 | 1_3:-51882107 | None:intergenic |
| AAAACAACCTTGTCCTTGTT+GGG | 0.399773 | 1_3:-51882106 | None:intergenic |
| TCTTGTGATTCTAGTGCCTC+AGG | 0.405629 | 1_3:-51882561 | None:intergenic |
| TGAATTTGGGGTGTCGGAGT+TGG | 0.413715 | 1_3:+51882470 | Msa0124220:CDS |
| TGTATCCCAAACCACAAAAC+TGG | 0.420129 | 1_3:-51881722 | None:intergenic |
| CAACAAGTCCTTCATTTGGT+TGG | 0.420416 | 1_3:-51881609 | None:intergenic |
| CTCGGTGAAAGAAGAATACT+TGG | 0.431235 | 1_3:+51881564 | Msa0124220:CDS |
| TCATTGTTATCTTCAGAAGT+TGG | 0.432296 | 1_3:-51882666 | None:intergenic |
| ATAGATGTCTTTGCCCTCTC+AGG | 0.446863 | 1_3:-51882035 | None:intergenic |
| TATCTCTGCAAGAATGCAAC+AGG | 0.457341 | 1_3:+51883106 | Msa0124220:three_prime_UTR |
| TGGGGTGGTGGTGGAATCGT+TGG | 0.458015 | 1_3:-51881589 | None:intergenic |
| GTATCTGGGAAGGAGATGAT+TGG | 0.458621 | 1_3:-51881755 | None:intergenic |
| ACAAGTCCTTCATTTGGTTG+GGG | 0.464149 | 1_3:-51881607 | None:intergenic |
| TTGATTGGGTAGGTTGCTGC+TGG | 0.464312 | 1_3:+51882861 | Msa0124220:intron |
| GGGGAAAATAATGGATAAAG+AGG | 0.470921 | 1_3:+51882527 | Msa0124220:CDS |
| AGTCCTTCATTTGGTTGGGG+TGG | 0.486652 | 1_3:-51881604 | None:intergenic |
| GTTCCATGAAATTATATGGT+TGG | 0.492988 | 1_3:-51881689 | None:intergenic |
| ATCTGTCATTATTTATGTCA+AGG | 0.493333 | 1_3:+51882912 | Msa0124220:CDS |
| ATGTTTAGTATGAAATTTGA+GGG | 0.495224 | 1_3:+51882630 | Msa0124220:CDS |
| TGATTATGAATTTGGGGTGT+CGG | 0.498346 | 1_3:+51882464 | Msa0124220:CDS |
| GCTTGATGATGAAGGGTTCT+GGG | 0.499647 | 1_3:+51882599 | Msa0124220:CDS |
| AATGTTAGCTATGGAAATGC+AGG | 0.499978 | 1_3:+51882494 | Msa0124220:CDS |
| TTATTGTGTTTGAAGTATCT+GGG | 0.502771 | 1_3:-51881769 | None:intergenic |
| CAAGGAACTAGACTAGGTAT+TGG | 0.504481 | 1_3:+51882402 | Msa0124220:CDS |
| AATGTTTAGTATGAAATTTG+AGG | 0.507525 | 1_3:+51882629 | Msa0124220:CDS |
| AAACTCATATATGCAATCCT+TGG | 0.512900 | 1_3:-51883182 | None:intergenic |
| TACACTTTATATTCTACAGA+TGG | 0.519014 | 1_3:+51882218 | Msa0124220:CDS |
| GGAGTTGGAAATGTTAGCTA+TGG | 0.532242 | 1_3:+51882485 | Msa0124220:CDS |
| ATTACTCAGAAGATATATGA+TGG | 0.535579 | 1_3:+51883023 | Msa0124220:CDS |
| ACTAGAATCACAAGAGAAGA+TGG | 0.536908 | 1_3:+51882569 | Msa0124220:CDS |
| GAGGAACATAAGAAGAAAGA+AGG | 0.543697 | 1_3:+51882059 | Msa0124220:CDS |
| CCACCACCCCAACCAAATGA+AGG | 0.544676 | 1_3:+51881601 | Msa0124220:CDS |
| TGTGTTTGAAGTATCTGGGA+AGG | 0.547658 | 1_3:-51881765 | None:intergenic |
| GTTACGTGATTATGAATTTG+GGG | 0.550082 | 1_3:+51882458 | Msa0124220:CDS |
| CAAATGAAAGATTCCTGAGA+GGG | 0.550958 | 1_3:+51882022 | Msa0124220:CDS |
| TTATTTATGTCAAGGACTCA+AGG | 0.552985 | 1_3:+51882920 | Msa0124220:CDS |
| CCTAATTCCCAACAAGGACA+AGG | 0.555251 | 1_3:+51882099 | Msa0124220:CDS |
| TTTATAAATACATACATGCA+TGG | 0.558905 | 1_3:-51881478 | None:intergenic |
| GAAAGAGTGCTTGATGATGA+AGG | 0.560834 | 1_3:+51882591 | Msa0124220:CDS |
| TGTAGTTGGTGAATGAAGAC+AGG | 0.561937 | 1_3:-51882312 | None:intergenic |
| AGATGGAGCAAAGGTTAGAA+GGG | 0.566766 | 1_3:+51882235 | Msa0124220:CDS |
| ATATTCTACAGATGGAGCAA+AGG | 0.570553 | 1_3:+51882226 | Msa0124220:CDS |
| ATCCTAAATTCTTGACTCAG+TGG | 0.576729 | 1_3:-51882711 | None:intergenic |
| AAGAGAAAGCTTGTTGAACA+AGG | 0.580615 | 1_3:+51882384 | Msa0124220:CDS |
| GAATTAGGAATAGGCTGAGA+AGG | 0.581690 | 1_3:-51882084 | None:intergenic |
| TCATAATCACGTAACTCTAA+CGG | 0.588925 | 1_3:-51882450 | None:intergenic |
| GGGAAGGAGATGATTGGAGA+AGG | 0.595385 | 1_3:-51881749 | None:intergenic |
| GAGGGCAAAGACATCTATTG+AGG | 0.598712 | 1_3:+51882040 | Msa0124220:CDS |
| ACTATTATTATAATCGACCA+AGG | 0.607327 | 1_3:+51883165 | Msa0124220:three_prime_UTR |
| ATAATTTCATGGAACAGAAG+TGG | 0.614186 | 1_3:+51881697 | Msa0124220:CDS |
| GCAAATGAAAGATTCCTGAG+AGG | 0.614961 | 1_3:+51882021 | Msa0124220:CDS |
| CCTATTCCTAATTCCCAACA+AGG | 0.619154 | 1_3:+51882093 | Msa0124220:CDS |
| AGAGAAACACGTGTTGATGA+CGG | 0.622649 | 1_3:+51882161 | Msa0124220:CDS |
| GTTGAACAAGGAACTAGACT+AGG | 0.638387 | 1_3:+51882396 | Msa0124220:CDS |
| AATTCTTAGACATATGTACT+CGG | 0.641403 | 1_3:+51881546 | Msa0124220:exon |
| AGAGGAAGTACATGAACCTG+AGG | 0.670115 | 1_3:+51882545 | Msa0124220:CDS |
| AAAGAGTGCTTGATGATGAA+GGG | 0.670867 | 1_3:+51882592 | Msa0124220:CDS |
| GTAGTTGGTGAATGAAGACA+GGG | 0.704135 | 1_3:-51882311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAGATAAGTATTATA+TGG | - | chr1_3:51883144-51883163 | None:intergenic | 15.0% |
| !! | ACAATAAGATAAGTATTATA+TGG | - | chr1_3:51883144-51883163 | None:intergenic | 15.0% |
| !! | TTTATAAATACATACATGCA+TGG | - | chr1_3:51881481-51881500 | None:intergenic | 20.0% |
| !! | AATGTTTAGTATGAAATTTG+AGG | + | chr1_3:51882629-51882648 | Msa0124220:CDS | 20.0% |
| !! | ATGTTTAGTATGAAATTTGA+GGG | + | chr1_3:51882630-51882649 | Msa0124220:CDS | 20.0% |
| !!! | AAGTCAATGTTTTATTTCAA+AGG | + | chr1_3:51882773-51882792 | Msa0124220:intron | 20.0% |
| !! | AGAGAATTTGATATAAACAA+GGG | - | chr1_3:51882827-51882846 | None:intergenic | 20.0% |
| !! | TTTATAAATACATACATGCA+TGG | - | chr1_3:51881481-51881500 | None:intergenic | 20.0% |
| !! | AATGTTTAGTATGAAATTTG+AGG | + | chr1_3:51882629-51882648 | Msa0124220:CDS | 20.0% |
| !! | ATGTTTAGTATGAAATTTGA+GGG | + | chr1_3:51882630-51882649 | Msa0124220:CDS | 20.0% |
| !!! | AAGTCAATGTTTTATTTCAA+AGG | + | chr1_3:51882773-51882792 | Msa0124220:intron | 20.0% |
| !! | AGAGAATTTGATATAAACAA+GGG | - | chr1_3:51882827-51882846 | None:intergenic | 20.0% |
| ! | GTCATAGATCATAGATTAAA+GGG | - | chr1_3:51881506-51881525 | None:intergenic | 25.0% |
| ! | AGTCATAGATCATAGATTAA+AGG | - | chr1_3:51881507-51881526 | None:intergenic | 25.0% |
| ! | AATTCTTAGACATATGTACT+CGG | + | chr1_3:51881546-51881565 | Msa0124220:exon | 25.0% |
| ! | TTCTGTTCCATGAAATTATA+TGG | - | chr1_3:51881696-51881715 | None:intergenic | 25.0% |
| !! | TTATTGTGTTTGAAGTATCT+GGG | - | chr1_3:51881772-51881791 | None:intergenic | 25.0% |
| !! | ATTATTGTGTTTGAAGTATC+TGG | - | chr1_3:51881773-51881792 | None:intergenic | 25.0% |
| !! | TTACAGTTCAAATTTGTTCT+CGG | + | chr1_3:51881912-51881931 | Msa0124220:intron | 25.0% |
| !! | TGTGTTATACAATATTTTGC+AGG | + | chr1_3:51881963-51881982 | Msa0124220:intron | 25.0% |
| !! | GTGTTATACAATATTTTGCA+GGG | + | chr1_3:51881964-51881983 | Msa0124220:intron | 25.0% |
| ! | AAAAATTGATCCAGATAGAT+GGG | + | chr1_3:51881993-51882012 | Msa0124220:CDS | 25.0% |
| ! | TACACTTTATATTCTACAGA+TGG | + | chr1_3:51882218-51882237 | Msa0124220:CDS | 25.0% |
| ! | AGTTACGTGATTATGAATTT+GGG | + | chr1_3:51882457-51882476 | Msa0124220:CDS | 25.0% |
| ! | GAGAGAATTTGATATAAACA+AGG | - | chr1_3:51882828-51882847 | None:intergenic | 25.0% |
| ! | ATCTGTCATTATTTATGTCA+AGG | + | chr1_3:51882912-51882931 | Msa0124220:CDS | 25.0% |
| ! | AGGTAATACAAAATTACAAC+AGG | - | chr1_3:51882991-51883010 | None:intergenic | 25.0% |
| ! | ATTACTCAGAAGATATATGA+TGG | + | chr1_3:51883023-51883042 | Msa0124220:CDS | 25.0% |
| ! | ACTATTATTATAATCGACCA+AGG | + | chr1_3:51883165-51883184 | Msa0124220:three_prime_UTR | 25.0% |
| ! | GTCATAGATCATAGATTAAA+GGG | - | chr1_3:51881506-51881525 | None:intergenic | 25.0% |
| ! | AGTCATAGATCATAGATTAA+AGG | - | chr1_3:51881507-51881526 | None:intergenic | 25.0% |
| ! | AATTCTTAGACATATGTACT+CGG | + | chr1_3:51881546-51881565 | Msa0124220:exon | 25.0% |
| ! | TTCTGTTCCATGAAATTATA+TGG | - | chr1_3:51881696-51881715 | None:intergenic | 25.0% |
| !! | TTATTGTGTTTGAAGTATCT+GGG | - | chr1_3:51881772-51881791 | None:intergenic | 25.0% |
| !! | ATTATTGTGTTTGAAGTATC+TGG | - | chr1_3:51881773-51881792 | None:intergenic | 25.0% |
| !! | TTACAGTTCAAATTTGTTCT+CGG | + | chr1_3:51881912-51881931 | Msa0124220:intron | 25.0% |
| !! | TGTGTTATACAATATTTTGC+AGG | + | chr1_3:51881963-51881982 | Msa0124220:intron | 25.0% |
| !! | GTGTTATACAATATTTTGCA+GGG | + | chr1_3:51881964-51881983 | Msa0124220:intron | 25.0% |
| ! | AAAAATTGATCCAGATAGAT+GGG | + | chr1_3:51881993-51882012 | Msa0124220:CDS | 25.0% |
| ! | TACACTTTATATTCTACAGA+TGG | + | chr1_3:51882218-51882237 | Msa0124220:CDS | 25.0% |
| ! | AGTTACGTGATTATGAATTT+GGG | + | chr1_3:51882457-51882476 | Msa0124220:CDS | 25.0% |
| ! | GAGAGAATTTGATATAAACA+AGG | - | chr1_3:51882828-51882847 | None:intergenic | 25.0% |
| ! | ATCTGTCATTATTTATGTCA+AGG | + | chr1_3:51882912-51882931 | Msa0124220:CDS | 25.0% |
| ! | AGGTAATACAAAATTACAAC+AGG | - | chr1_3:51882991-51883010 | None:intergenic | 25.0% |
| ! | ATTACTCAGAAGATATATGA+TGG | + | chr1_3:51883023-51883042 | Msa0124220:CDS | 25.0% |
| ! | ACTATTATTATAATCGACCA+AGG | + | chr1_3:51883165-51883184 | Msa0124220:three_prime_UTR | 25.0% |
| ATTTCAACAAGTCCTTCATT+TGG | - | chr1_3:51881616-51881635 | None:intergenic | 30.0% | |
| !! | TCAAATGTTTTTGTGAGGAA+TGG | - | chr1_3:51881649-51881668 | None:intergenic | 30.0% |
| !! | CTACATCAAATGTTTTTGTG+AGG | - | chr1_3:51881654-51881673 | None:intergenic | 30.0% |
| GTACCAACCATATAATTTCA+TGG | + | chr1_3:51881686-51881705 | Msa0124220:CDS | 30.0% | |
| GTTCCATGAAATTATATGGT+TGG | - | chr1_3:51881692-51881711 | None:intergenic | 30.0% | |
| ATAATTTCATGGAACAGAAG+TGG | + | chr1_3:51881697-51881716 | Msa0124220:CDS | 30.0% | |
| !! | TTGTTTTCTCATACTGATTG+TGG | + | chr1_3:51881937-51881956 | Msa0124220:intron | 30.0% |
| GAAAAATTGATCCAGATAGA+TGG | + | chr1_3:51881992-51882011 | Msa0124220:CDS | 30.0% | |
| ATGCAGAAATTGATCGTTTA+AGG | + | chr1_3:51882136-51882155 | Msa0124220:CDS | 30.0% | |
| ACAACAGAAAGAGAAGAAAA+AGG | + | chr1_3:51882332-51882351 | Msa0124220:CDS | 30.0% | |
| !!! | AAGCTTTCTCTTTTTTGTCA+TGG | - | chr1_3:51882376-51882395 | None:intergenic | 30.0% |
| TCATAATCACGTAACTCTAA+CGG | - | chr1_3:51882453-51882472 | None:intergenic | 30.0% | |
| GAGTTACGTGATTATGAATT+TGG | + | chr1_3:51882456-51882475 | Msa0124220:CDS | 30.0% | |
| GTTACGTGATTATGAATTTG+GGG | + | chr1_3:51882458-51882477 | Msa0124220:CDS | 30.0% | |
| TCATTGTTATCTTCAGAAGT+TGG | - | chr1_3:51882669-51882688 | None:intergenic | 30.0% | |
| TCATGTTTCTTGTGTTTGAT+TGG | + | chr1_3:51882846-51882865 | Msa0124220:intron | 30.0% | |
| CATGTTTCTTGTGTTTGATT+GGG | + | chr1_3:51882847-51882866 | Msa0124220:intron | 30.0% | |
| TTATTTATGTCAAGGACTCA+AGG | + | chr1_3:51882920-51882939 | Msa0124220:CDS | 30.0% | |
| TGAGTAATCTACATTCATCA+AGG | - | chr1_3:51883011-51883030 | None:intergenic | 30.0% | |
| AAACTCATATATGCAATCCT+TGG | - | chr1_3:51883185-51883204 | None:intergenic | 30.0% | |
| CTTGTTTATTCTGATGAGTT+TGG | + | chr1_3:51883254-51883273 | Msa0124220:three_prime_UTR | 30.0% | |
| ATTTCAACAAGTCCTTCATT+TGG | - | chr1_3:51881616-51881635 | None:intergenic | 30.0% | |
| !! | TCAAATGTTTTTGTGAGGAA+TGG | - | chr1_3:51881649-51881668 | None:intergenic | 30.0% |
| !! | CTACATCAAATGTTTTTGTG+AGG | - | chr1_3:51881654-51881673 | None:intergenic | 30.0% |
| GTACCAACCATATAATTTCA+TGG | + | chr1_3:51881686-51881705 | Msa0124220:CDS | 30.0% | |
| GTTCCATGAAATTATATGGT+TGG | - | chr1_3:51881692-51881711 | None:intergenic | 30.0% | |
| ATAATTTCATGGAACAGAAG+TGG | + | chr1_3:51881697-51881716 | Msa0124220:CDS | 30.0% | |
| !! | TTGTTTTCTCATACTGATTG+TGG | + | chr1_3:51881937-51881956 | Msa0124220:intron | 30.0% |
| GAAAAATTGATCCAGATAGA+TGG | + | chr1_3:51881992-51882011 | Msa0124220:CDS | 30.0% | |
| ATGCAGAAATTGATCGTTTA+AGG | + | chr1_3:51882136-51882155 | Msa0124220:CDS | 30.0% | |
| ACAACAGAAAGAGAAGAAAA+AGG | + | chr1_3:51882332-51882351 | Msa0124220:CDS | 30.0% | |
| !!! | AAGCTTTCTCTTTTTTGTCA+TGG | - | chr1_3:51882376-51882395 | None:intergenic | 30.0% |
| TCATAATCACGTAACTCTAA+CGG | - | chr1_3:51882453-51882472 | None:intergenic | 30.0% | |
| GAGTTACGTGATTATGAATT+TGG | + | chr1_3:51882456-51882475 | Msa0124220:CDS | 30.0% | |
| GTTACGTGATTATGAATTTG+GGG | + | chr1_3:51882458-51882477 | Msa0124220:CDS | 30.0% | |
| TCATTGTTATCTTCAGAAGT+TGG | - | chr1_3:51882669-51882688 | None:intergenic | 30.0% | |
| TCATGTTTCTTGTGTTTGAT+TGG | + | chr1_3:51882846-51882865 | Msa0124220:intron | 30.0% | |
| CATGTTTCTTGTGTTTGATT+GGG | + | chr1_3:51882847-51882866 | Msa0124220:intron | 30.0% | |
| TTATTTATGTCAAGGACTCA+AGG | + | chr1_3:51882920-51882939 | Msa0124220:CDS | 30.0% | |
| TGAGTAATCTACATTCATCA+AGG | - | chr1_3:51883011-51883030 | None:intergenic | 30.0% | |
| AAACTCATATATGCAATCCT+TGG | - | chr1_3:51883185-51883204 | None:intergenic | 30.0% | |
| CTTGTTTATTCTGATGAGTT+TGG | + | chr1_3:51883254-51883273 | Msa0124220:three_prime_UTR | 30.0% | |
| AACAAGTCCTTCATTTGGTT+GGG | - | chr1_3:51881611-51881630 | None:intergenic | 35.0% | |
| TGATCCTAATGTCTCTATCT+AGG | + | chr1_3:51881855-51881874 | Msa0124220:intron | 35.0% | |
| TTTGCAAATTCCCATCTATC+TGG | - | chr1_3:51882006-51882025 | None:intergenic | 35.0% | |
| CAAATGAAAGATTCCTGAGA+GGG | + | chr1_3:51882022-51882041 | Msa0124220:CDS | 35.0% | |
| GAGGAACATAAGAAGAAAGA+AGG | + | chr1_3:51882059-51882078 | Msa0124220:CDS | 35.0% | |
| AAAACAACCTTGTCCTTGTT+GGG | - | chr1_3:51882109-51882128 | None:intergenic | 35.0% | |
| ATATTCTACAGATGGAGCAA+AGG | + | chr1_3:51882226-51882245 | Msa0124220:CDS | 35.0% | |
| TCTTCTCTTTCTGTTGTAGT+TGG | - | chr1_3:51882329-51882348 | None:intergenic | 35.0% | |
| !! | AAGAGAAAGCTTGTTGAACA+AGG | + | chr1_3:51882384-51882403 | Msa0124220:CDS | 35.0% |
| ! | TGATTATGAATTTGGGGTGT+CGG | + | chr1_3:51882464-51882483 | Msa0124220:CDS | 35.0% |
| AATGTTAGCTATGGAAATGC+AGG | + | chr1_3:51882494-51882513 | Msa0124220:CDS | 35.0% | |
| !! | TTTTGGAAGGGGGAAAATAA+TGG | + | chr1_3:51882518-51882537 | Msa0124220:CDS | 35.0% |
| !! | GGGGAAAATAATGGATAAAG+AGG | + | chr1_3:51882527-51882546 | Msa0124220:CDS | 35.0% |
| ACTAGAATCACAAGAGAAGA+TGG | + | chr1_3:51882569-51882588 | Msa0124220:CDS | 35.0% | |
| !! | AAAGAGTGCTTGATGATGAA+GGG | + | chr1_3:51882592-51882611 | Msa0124220:CDS | 35.0% |
| AACCACTGAGTCAAGAATTT+AGG | + | chr1_3:51882709-51882728 | Msa0124220:CDS | 35.0% | |
| ATCCTAAATTCTTGACTCAG+TGG | - | chr1_3:51882714-51882733 | None:intergenic | 35.0% | |
| TTTCTTGTGTTTGATTGGGT+AGG | + | chr1_3:51882851-51882870 | Msa0124220:intron | 35.0% | |
| GCTATCAAAGAATCTTGTTC+TGG | - | chr1_3:51882889-51882908 | None:intergenic | 35.0% | |
| !!! | GGTTCAATTTTTTTACCACC+AGG | + | chr1_3:51882941-51882960 | Msa0124220:intron | 35.0% |
| CATATCTACATATAGCTTCC+TGG | - | chr1_3:51882962-51882981 | None:intergenic | 35.0% | |
| TTCACTCAGTTATGCTTTCT+AGG | - | chr1_3:51883067-51883086 | None:intergenic | 35.0% | |
| AACAAGTCCTTCATTTGGTT+GGG | - | chr1_3:51881611-51881630 | None:intergenic | 35.0% | |
| TGATCCTAATGTCTCTATCT+AGG | + | chr1_3:51881855-51881874 | Msa0124220:intron | 35.0% | |
| TTTGCAAATTCCCATCTATC+TGG | - | chr1_3:51882006-51882025 | None:intergenic | 35.0% | |
| CAAATGAAAGATTCCTGAGA+GGG | + | chr1_3:51882022-51882041 | Msa0124220:CDS | 35.0% | |
| GAGGAACATAAGAAGAAAGA+AGG | + | chr1_3:51882059-51882078 | Msa0124220:CDS | 35.0% | |
| AAAACAACCTTGTCCTTGTT+GGG | - | chr1_3:51882109-51882128 | None:intergenic | 35.0% | |
| ATATTCTACAGATGGAGCAA+AGG | + | chr1_3:51882226-51882245 | Msa0124220:CDS | 35.0% | |
| TCTTCTCTTTCTGTTGTAGT+TGG | - | chr1_3:51882329-51882348 | None:intergenic | 35.0% | |
| !! | AAGAGAAAGCTTGTTGAACA+AGG | + | chr1_3:51882384-51882403 | Msa0124220:CDS | 35.0% |
| ! | TGATTATGAATTTGGGGTGT+CGG | + | chr1_3:51882464-51882483 | Msa0124220:CDS | 35.0% |
| AATGTTAGCTATGGAAATGC+AGG | + | chr1_3:51882494-51882513 | Msa0124220:CDS | 35.0% | |
| !! | TTTTGGAAGGGGGAAAATAA+TGG | + | chr1_3:51882518-51882537 | Msa0124220:CDS | 35.0% |
| !! | GGGGAAAATAATGGATAAAG+AGG | + | chr1_3:51882527-51882546 | Msa0124220:CDS | 35.0% |
| ACTAGAATCACAAGAGAAGA+TGG | + | chr1_3:51882569-51882588 | Msa0124220:CDS | 35.0% | |
| !! | AAAGAGTGCTTGATGATGAA+GGG | + | chr1_3:51882592-51882611 | Msa0124220:CDS | 35.0% |
| AACCACTGAGTCAAGAATTT+AGG | + | chr1_3:51882709-51882728 | Msa0124220:CDS | 35.0% | |
| ATCCTAAATTCTTGACTCAG+TGG | - | chr1_3:51882714-51882733 | None:intergenic | 35.0% | |
| TTTCTTGTGTTTGATTGGGT+AGG | + | chr1_3:51882851-51882870 | Msa0124220:intron | 35.0% | |
| GCTATCAAAGAATCTTGTTC+TGG | - | chr1_3:51882889-51882908 | None:intergenic | 35.0% | |
| !!! | GGTTCAATTTTTTTACCACC+AGG | + | chr1_3:51882941-51882960 | Msa0124220:intron | 35.0% |
| CATATCTACATATAGCTTCC+TGG | - | chr1_3:51882962-51882981 | None:intergenic | 35.0% | |
| TTCACTCAGTTATGCTTTCT+AGG | - | chr1_3:51883067-51883086 | None:intergenic | 35.0% | |
| CTCGGTGAAAGAAGAATACT+TGG | + | chr1_3:51881564-51881583 | Msa0124220:CDS | 40.0% | |
| ACAAGTCCTTCATTTGGTTG+GGG | - | chr1_3:51881610-51881629 | None:intergenic | 40.0% | |
| CAACAAGTCCTTCATTTGGT+TGG | - | chr1_3:51881612-51881631 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGAGGAATGGTTG+TGG | - | chr1_3:51881643-51881662 | None:intergenic | 40.0% |
| TGTATCCCAAACCACAAAAC+TGG | - | chr1_3:51881725-51881744 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTATCTGGGA+AGG | - | chr1_3:51881768-51881787 | None:intergenic | 40.0% |
| CTGACCTAGATAGAGACATT+AGG | - | chr1_3:51881862-51881881 | None:intergenic | 40.0% | |
| GCAAATGAAAGATTCCTGAG+AGG | + | chr1_3:51882021-51882040 | Msa0124220:CDS | 40.0% | |
| GAATTAGGAATAGGCTGAGA+AGG | - | chr1_3:51882087-51882106 | None:intergenic | 40.0% | |
| CCTTGTTGGGAATTAGGAAT+AGG | - | chr1_3:51882096-51882115 | None:intergenic | 40.0% | |
| CCTATTCCTAATTCCCAACA+AGG | + | chr1_3:51882093-51882112 | Msa0124220:CDS | 40.0% | |
| CAAAACAACCTTGTCCTTGT+TGG | - | chr1_3:51882110-51882129 | None:intergenic | 40.0% | |
| ! | CAACAAGGACAAGGTTGTTT+TGG | + | chr1_3:51882108-51882127 | Msa0124220:CDS | 40.0% |
| ! | AGAGAAACACGTGTTGATGA+CGG | + | chr1_3:51882161-51882180 | Msa0124220:CDS | 40.0% |
| AGATGGAGCAAAGGTTAGAA+GGG | + | chr1_3:51882235-51882254 | Msa0124220:CDS | 40.0% | |
| !! | GTAGTTGGTGAATGAAGACA+GGG | - | chr1_3:51882314-51882333 | None:intergenic | 40.0% |
| !! | TGTAGTTGGTGAATGAAGAC+AGG | - | chr1_3:51882315-51882334 | None:intergenic | 40.0% |
| !!! | TCTCTTTTTTGTCATGGTCG+CGG | - | chr1_3:51882370-51882389 | None:intergenic | 40.0% |
| GTTGAACAAGGAACTAGACT+AGG | + | chr1_3:51882396-51882415 | Msa0124220:CDS | 40.0% | |
| CAAGGAACTAGACTAGGTAT+TGG | + | chr1_3:51882402-51882421 | Msa0124220:CDS | 40.0% | |
| GGAGTTGGAAATGTTAGCTA+TGG | + | chr1_3:51882485-51882504 | Msa0124220:CDS | 40.0% | |
| ! | GCTATGGAAATGCAGGTTTT+TGG | + | chr1_3:51882501-51882520 | Msa0124220:CDS | 40.0% |
| !! | TGGAAATGCAGGTTTTTGGA+AGG | + | chr1_3:51882505-51882524 | Msa0124220:CDS | 40.0% |
| !! | GGAAATGCAGGTTTTTGGAA+GGG | + | chr1_3:51882506-51882525 | Msa0124220:CDS | 40.0% |
| !! | GAAATGCAGGTTTTTGGAAG+GGG | + | chr1_3:51882507-51882526 | Msa0124220:CDS | 40.0% |
| !! | AAATGCAGGTTTTTGGAAGG+GGG | + | chr1_3:51882508-51882527 | Msa0124220:CDS | 40.0% |
| !! | GAAAGAGTGCTTGATGATGA+AGG | + | chr1_3:51882591-51882610 | Msa0124220:CDS | 40.0% |
| ATCTACATATAGCTTCCTGG+TGG | - | chr1_3:51882959-51882978 | None:intergenic | 40.0% | |
| TATCTCTGCAAGAATGCAAC+AGG | + | chr1_3:51883106-51883125 | Msa0124220:three_prime_UTR | 40.0% | |
| CTCGGTGAAAGAAGAATACT+TGG | + | chr1_3:51881564-51881583 | Msa0124220:CDS | 40.0% | |
| ACAAGTCCTTCATTTGGTTG+GGG | - | chr1_3:51881610-51881629 | None:intergenic | 40.0% | |
| CAACAAGTCCTTCATTTGGT+TGG | - | chr1_3:51881612-51881631 | None:intergenic | 40.0% | |
| ! | GTTTTTGTGAGGAATGGTTG+TGG | - | chr1_3:51881643-51881662 | None:intergenic | 40.0% |
| TGTATCCCAAACCACAAAAC+TGG | - | chr1_3:51881725-51881744 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTATCTGGGA+AGG | - | chr1_3:51881768-51881787 | None:intergenic | 40.0% |
| CTGACCTAGATAGAGACATT+AGG | - | chr1_3:51881862-51881881 | None:intergenic | 40.0% | |
| GCAAATGAAAGATTCCTGAG+AGG | + | chr1_3:51882021-51882040 | Msa0124220:CDS | 40.0% | |
| GAATTAGGAATAGGCTGAGA+AGG | - | chr1_3:51882087-51882106 | None:intergenic | 40.0% | |
| CCTTGTTGGGAATTAGGAAT+AGG | - | chr1_3:51882096-51882115 | None:intergenic | 40.0% | |
| CCTATTCCTAATTCCCAACA+AGG | + | chr1_3:51882093-51882112 | Msa0124220:CDS | 40.0% | |
| CAAAACAACCTTGTCCTTGT+TGG | - | chr1_3:51882110-51882129 | None:intergenic | 40.0% | |
| ! | CAACAAGGACAAGGTTGTTT+TGG | + | chr1_3:51882108-51882127 | Msa0124220:CDS | 40.0% |
| ! | AGAGAAACACGTGTTGATGA+CGG | + | chr1_3:51882161-51882180 | Msa0124220:CDS | 40.0% |
| AGATGGAGCAAAGGTTAGAA+GGG | + | chr1_3:51882235-51882254 | Msa0124220:CDS | 40.0% | |
| !! | GTAGTTGGTGAATGAAGACA+GGG | - | chr1_3:51882314-51882333 | None:intergenic | 40.0% |
| !! | TGTAGTTGGTGAATGAAGAC+AGG | - | chr1_3:51882315-51882334 | None:intergenic | 40.0% |
| !!! | TCTCTTTTTTGTCATGGTCG+CGG | - | chr1_3:51882370-51882389 | None:intergenic | 40.0% |
| GTTGAACAAGGAACTAGACT+AGG | + | chr1_3:51882396-51882415 | Msa0124220:CDS | 40.0% | |
| CAAGGAACTAGACTAGGTAT+TGG | + | chr1_3:51882402-51882421 | Msa0124220:CDS | 40.0% | |
| GGAGTTGGAAATGTTAGCTA+TGG | + | chr1_3:51882485-51882504 | Msa0124220:CDS | 40.0% | |
| ! | GCTATGGAAATGCAGGTTTT+TGG | + | chr1_3:51882501-51882520 | Msa0124220:CDS | 40.0% |
| !! | TGGAAATGCAGGTTTTTGGA+AGG | + | chr1_3:51882505-51882524 | Msa0124220:CDS | 40.0% |
| !! | GGAAATGCAGGTTTTTGGAA+GGG | + | chr1_3:51882506-51882525 | Msa0124220:CDS | 40.0% |
| !! | GAAATGCAGGTTTTTGGAAG+GGG | + | chr1_3:51882507-51882526 | Msa0124220:CDS | 40.0% |
| !! | AAATGCAGGTTTTTGGAAGG+GGG | + | chr1_3:51882508-51882527 | Msa0124220:CDS | 40.0% |
| !! | GAAAGAGTGCTTGATGATGA+AGG | + | chr1_3:51882591-51882610 | Msa0124220:CDS | 40.0% |
| ATCTACATATAGCTTCCTGG+TGG | - | chr1_3:51882959-51882978 | None:intergenic | 40.0% | |
| TATCTCTGCAAGAATGCAAC+AGG | + | chr1_3:51883106-51883125 | Msa0124220:three_prime_UTR | 40.0% | |
| !! | TGGCACCAGTTTTGTGGTTT+GGG | + | chr1_3:51881717-51881736 | Msa0124220:CDS | 45.0% |
| GTATCTGGGAAGGAGATGAT+TGG | - | chr1_3:51881758-51881777 | None:intergenic | 45.0% | |
| ATAGATGTCTTTGCCCTCTC+AGG | - | chr1_3:51882038-51882057 | None:intergenic | 45.0% | |
| GAGGGCAAAGACATCTATTG+AGG | + | chr1_3:51882040-51882059 | Msa0124220:CDS | 45.0% | |
| CCTTGTCCTTGTTGGGAATT+AGG | - | chr1_3:51882102-51882121 | None:intergenic | 45.0% | |
| CCTAATTCCCAACAAGGACA+AGG | + | chr1_3:51882099-51882118 | Msa0124220:CDS | 45.0% | |
| CAGATGGAGCAAAGGTTAGA+AGG | + | chr1_3:51882234-51882253 | Msa0124220:CDS | 45.0% | |
| ! | AGAGGAAGTACATGAACCTG+AGG | + | chr1_3:51882545-51882564 | Msa0124220:CDS | 45.0% |
| TCTTGTGATTCTAGTGCCTC+AGG | - | chr1_3:51882564-51882583 | None:intergenic | 45.0% | |
| !! | TGCTTGATGATGAAGGGTTC+TGG | + | chr1_3:51882598-51882617 | Msa0124220:CDS | 45.0% |
| !! | GCTTGATGATGAAGGGTTCT+GGG | + | chr1_3:51882599-51882618 | Msa0124220:CDS | 45.0% |
| !! | TGGCACCAGTTTTGTGGTTT+GGG | + | chr1_3:51881717-51881736 | Msa0124220:CDS | 45.0% |
| GTATCTGGGAAGGAGATGAT+TGG | - | chr1_3:51881758-51881777 | None:intergenic | 45.0% | |
| ATAGATGTCTTTGCCCTCTC+AGG | - | chr1_3:51882038-51882057 | None:intergenic | 45.0% | |
| GAGGGCAAAGACATCTATTG+AGG | + | chr1_3:51882040-51882059 | Msa0124220:CDS | 45.0% | |
| CCTTGTCCTTGTTGGGAATT+AGG | - | chr1_3:51882102-51882121 | None:intergenic | 45.0% | |
| CCTAATTCCCAACAAGGACA+AGG | + | chr1_3:51882099-51882118 | Msa0124220:CDS | 45.0% | |
| CAGATGGAGCAAAGGTTAGA+AGG | + | chr1_3:51882234-51882253 | Msa0124220:CDS | 45.0% | |
| ! | AGAGGAAGTACATGAACCTG+AGG | + | chr1_3:51882545-51882564 | Msa0124220:CDS | 45.0% |
| TCTTGTGATTCTAGTGCCTC+AGG | - | chr1_3:51882564-51882583 | None:intergenic | 45.0% | |
| !! | TGCTTGATGATGAAGGGTTC+TGG | + | chr1_3:51882598-51882617 | Msa0124220:CDS | 45.0% |
| !! | GCTTGATGATGAAGGGTTCT+GGG | + | chr1_3:51882599-51882618 | Msa0124220:CDS | 45.0% |
| AGTCCTTCATTTGGTTGGGG+TGG | - | chr1_3:51881607-51881626 | None:intergenic | 50.0% | |
| ! | CAGAAGTGGCACCAGTTTTG+TGG | + | chr1_3:51881711-51881730 | Msa0124220:CDS | 50.0% |
| !! | GTGGCACCAGTTTTGTGGTT+TGG | + | chr1_3:51881716-51881735 | Msa0124220:CDS | 50.0% |
| GGGAAGGAGATGATTGGAGA+AGG | - | chr1_3:51881752-51881771 | None:intergenic | 50.0% | |
| !! | TGAATTTGGGGTGTCGGAGT+TGG | + | chr1_3:51882470-51882489 | Msa0124220:CDS | 50.0% |
| TTGATTGGGTAGGTTGCTGC+TGG | + | chr1_3:51882861-51882880 | Msa0124220:intron | 50.0% | |
| AGTCCTTCATTTGGTTGGGG+TGG | - | chr1_3:51881607-51881626 | None:intergenic | 50.0% | |
| ! | CAGAAGTGGCACCAGTTTTG+TGG | + | chr1_3:51881711-51881730 | Msa0124220:CDS | 50.0% |
| !! | GTGGCACCAGTTTTGTGGTT+TGG | + | chr1_3:51881716-51881735 | Msa0124220:CDS | 50.0% |
| GGGAAGGAGATGATTGGAGA+AGG | - | chr1_3:51881752-51881771 | None:intergenic | 50.0% | |
| !! | TGAATTTGGGGTGTCGGAGT+TGG | + | chr1_3:51882470-51882489 | Msa0124220:CDS | 50.0% |
| TTGATTGGGTAGGTTGCTGC+TGG | + | chr1_3:51882861-51882880 | Msa0124220:intron | 50.0% | |
| ! | TCATTTGGTTGGGGTGGTGG+TGG | - | chr1_3:51881601-51881620 | None:intergenic | 55.0% |
| CCTTCATTTGGTTGGGGTGG+TGG | - | chr1_3:51881604-51881623 | None:intergenic | 55.0% | |
| CCACCACCCCAACCAAATGA+AGG | + | chr1_3:51881601-51881620 | Msa0124220:CDS | 55.0% | |
| ! | TCATTTGGTTGGGGTGGTGG+TGG | - | chr1_3:51881601-51881620 | None:intergenic | 55.0% |
| CCTTCATTTGGTTGGGGTGG+TGG | - | chr1_3:51881604-51881623 | None:intergenic | 55.0% | |
| CCACCACCCCAACCAAATGA+AGG | + | chr1_3:51881601-51881620 | Msa0124220:CDS | 55.0% | |
| !! | TGGGGTGGTGGTGGAATCGT+TGG | - | chr1_3:51881592-51881611 | None:intergenic | 60.0% |
| !! | TGGGGTGGTGGTGGAATCGT+TGG | - | chr1_3:51881592-51881611 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 51881456 | 51883280 | 51881456 | ID=Msa0124220;Name=Msa0124220 |
| chr1_3 | mRNA | 51881456 | 51883280 | 51881456 | ID=Msa0124220-mRNA-1;Parent=Msa0124220;Name=Msa0124220-mRNA-1;_AED=0.20;_eAED=0.20;_QI=103|0.66|0.5|1|1|1|4|195|387 |
| chr1_3 | exon | 51881456 | 51881825 | 51881456 | ID=Msa0124220-mRNA-1:exon:15836;Parent=Msa0124220-mRNA-1 |
| chr1_3 | exon | 51881985 | 51882749 | 51881985 | ID=Msa0124220-mRNA-1:exon:15837;Parent=Msa0124220-mRNA-1 |
| chr1_3 | exon | 51882873 | 51882941 | 51882873 | ID=Msa0124220-mRNA-1:exon:15838;Parent=Msa0124220-mRNA-1 |
| chr1_3 | exon | 51883023 | 51883280 | 51883023 | ID=Msa0124220-mRNA-1:exon:15839;Parent=Msa0124220-mRNA-1 |
| chr1_3 | five_prime_UTR | 51881456 | 51881558 | 51881456 | ID=Msa0124220-mRNA-1:five_prime_utr;Parent=Msa0124220-mRNA-1 |
| chr1_3 | CDS | 51881559 | 51881825 | 51881559 | ID=Msa0124220-mRNA-1:cds;Parent=Msa0124220-mRNA-1 |
| chr1_3 | CDS | 51881985 | 51882749 | 51881985 | ID=Msa0124220-mRNA-1:cds;Parent=Msa0124220-mRNA-1 |
| chr1_3 | CDS | 51882873 | 51882941 | 51882873 | ID=Msa0124220-mRNA-1:cds;Parent=Msa0124220-mRNA-1 |
| chr1_3 | CDS | 51883023 | 51883085 | 51883023 | ID=Msa0124220-mRNA-1:cds;Parent=Msa0124220-mRNA-1 |
| chr1_3 | three_prime_UTR | 51883086 | 51883280 | 51883086 | ID=Msa0124220-mRNA-1:three_prime_utr;Parent=Msa0124220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
