AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028570 MtrunA17_Chr1g0185191 83.607 244 2 1 1 206 1 244 1.15e-139 390
Msa0028570 MtrunA17_Chr7g0260311 65.106 235 44 1 9 205 3 237 1.58e-85 252
Msa0028570 MtrunA17_Chr7g0260301 49.372 239 77 2 10 204 4 242 9.13e-65 200
Msa0028570 MtrunA17_Chr7g0260221 50.431 232 77 1 8 201 2 233 5.60e-63 195
Msa0028570 MtrunA17_Chr7g0260241 47.845 232 83 1 8 201 2 233 1.44e-61 192
Msa0028570 MtrunA17_Chr1g0209611 42.975 242 85 4 9 202 2 238 8.72e-57 179
Msa0028570 MtrunA17_Chr2g0287051 41.991 231 97 4 12 206 28 257 4.46e-52 168
Msa0028570 MtrunA17_Chr7g0260251 53.719 121 42 2 87 205 3 111 6.21e-31 109
Msa0028570 MtrunA17_Chr7g0260271 56.522 92 38 1 92 183 26 115 4.83e-24 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028570 AT1G03070.2 65.587 247 43 2 1 205 1 247 3.53e-105 303
Msa0028570 AT1G03070.3 65.587 247 43 2 1 205 1 247 3.53e-105 303
Msa0028570 AT1G03070.1 65.587 247 43 2 1 205 1 247 3.53e-105 303
Msa0028570 AT4G02690.2 73.913 207 50 2 1 203 1 207 2.14e-98 284
Msa0028570 AT3G63310.1 63.525 244 46 2 1 206 1 239 5.12e-97 282
Msa0028570 AT4G02690.1 62.449 245 50 3 1 203 1 245 1.87e-90 266
Msa0028570 AT4G14730.1 50.000 230 76 3 10 200 3 232 1.42e-70 215
Msa0028570 AT4G15470.1 43.145 248 96 6 1 206 12 256 3.00e-55 176

Find 74 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGACTCTCTACACATTT+TGG 0.130439 1_1:+53556180 Msa0028570:CDS
GGCTTCTGTCTCCTTATATT+TGG 0.136616 1_1:+53556500 Msa0028570:CDS
TCCACATCTTCTTGAGTTTC+CGG 0.192644 1_1:-53554795 None:intergenic
ATACTAGTTCTTATGGTCTT+TGG 0.193055 1_1:+53556257 Msa0028570:CDS
TGGTGCTATACTAGTTCTTA+TGG 0.241827 1_1:+53556250 Msa0028570:CDS
TACTAGTTCTTATGGTCTTT+GGG 0.245956 1_1:+53556258 Msa0028570:CDS
TACGAAAACACGTTCTTATC+TGG 0.259036 1_1:+53556634 Msa0028570:three_prime_UTR
TATGGTCTTTGGGATGATTC+AGG 0.268186 1_1:+53556268 Msa0028570:CDS
TTCCTTGGCCCCTTCTTGTT+TGG 0.270915 1_1:+53556230 Msa0028570:CDS
GTTGATCCTTTCTATTGAAT+TGG 0.291930 1_1:+53556876 Msa0028570:three_prime_UTR
GAGGGAAAATGCGAGAAAAT+TGG 0.304601 1_1:-53554746 None:intergenic
ATGAAGGACCATCGGAGTTC+GGG 0.308915 1_1:-53554892 None:intergenic
GTATACAGAGAAAGTAATTC+TGG 0.310445 1_1:+53556124 Msa0028570:intron
GTTGATGATGTCCAAATATA+AGG 0.321463 1_1:-53556511 None:intergenic
ATTCCTATGATGAATTCATT+TGG 0.330140 1_1:+53556478 Msa0028570:CDS
TTAATACACATTACTGTAGT+TGG 0.367432 1_1:+53556725 Msa0028570:three_prime_UTR
TTCCTATGATGAATTCATTT+GGG 0.372763 1_1:+53556479 Msa0028570:CDS
TACGAGAAGTAGGGGCAATC+AGG 0.387382 1_1:-53556676 None:intergenic
AAGTTATCTACAATGATCTA+TGG 0.395967 1_1:+53556390 Msa0028570:CDS
CTGGATTATCACTATTGTTA+AGG 0.404952 1_1:+53556699 Msa0028570:three_prime_UTR
GATGAAGGACCATCGGAGTT+CGG 0.413168 1_1:-53554893 None:intergenic
GGCTATGATTTCAACTTCCT+TGG 0.415448 1_1:+53556215 Msa0028570:CDS
TCAAAGCTATTATGATTGCT+AGG 0.431109 1_1:+53556853 Msa0028570:three_prime_UTR
GGTAGCGAAGAAAGTGGAAA+TGG 0.434726 1_1:-53554992 None:intergenic
GTTGAAGTCCTTGTACTCAT+TGG 0.437601 1_1:+53556574 Msa0028570:exon
TGATTTCCAATTCAATAGAA+AGG 0.452966 1_1:-53556882 None:intergenic
TACAATGATCTATGGTTGCT+TGG 0.466219 1_1:+53556398 Msa0028570:CDS
TCGGGGCTTTCGAGCATCAT+CGG 0.470230 1_1:-53554874 None:intergenic
TTCTTCGCTACCACCGGCGC+TGG 0.472313 1_1:+53555003 Msa0028570:CDS
AACTCAAGAAGATGTGGAAT+CGG 0.480322 1_1:+53554800 Msa0028570:exon
TATCTGGTAATAAATCTTTG+TGG 0.483167 1_1:+53556650 Msa0028570:three_prime_UTR
CGGGGCTTTCGAGCATCATC+GGG 0.487087 1_1:-53554873 None:intergenic
AGCGCAACGCACTGATGAAA+GGG 0.488809 1_1:-53555056 None:intergenic
ATTGCCCCTACTTCTCGTAC+TGG 0.489129 1_1:+53556680 Msa0028570:three_prime_UTR
TAGTGAGCAAGGACAGGAAA+AGG 0.490792 1_1:-53556533 None:intergenic
GATAATCCAGTACGAGAAGT+AGG 0.491891 1_1:-53556686 None:intergenic
TCTATTGAATTGGAAATCAA+AGG 0.497996 1_1:+53556886 Msa0028570:three_prime_UTR
AGCCCAAATGAATTCATCAT+AGG 0.498521 1_1:-53556481 None:intergenic
TGAAAATAGTGAGCAAGGAC+AGG 0.508474 1_1:-53556539 None:intergenic
ATAATCCAGTACGAGAAGTA+GGG 0.521105 1_1:-53556685 None:intergenic
AAGCGCAACGCACTGATGAA+AGG 0.522068 1_1:-53555057 None:intergenic
CGGGTAGAGAGGTCTTGAAC+CGG 0.523484 1_1:-53554854 None:intergenic
CAAAGCTATTATGATTGCTA+GGG 0.528371 1_1:+53556854 Msa0028570:three_prime_UTR
TAGTATAGCACCAAACAAGA+AGG 0.529396 1_1:-53556240 None:intergenic
TCCACTTTCTTCGCTACCAC+CGG 0.539244 1_1:+53554997 Msa0028570:CDS
CACCAAACAAGAAGGGGCCA+AGG 0.548467 1_1:-53556232 None:intergenic
TCTTGAACCGGTTTCCACAT+CGG 0.552788 1_1:-53554842 None:intergenic
TCAAGTTGTCTGTATCGTAC+AGG 0.553801 1_1:-53556446 None:intergenic
TTGGCAGCAATTATATTCTG+TGG 0.565745 1_1:+53556417 Msa0028570:CDS
GTAGCGAAGAAAGTGGAAAT+GGG 0.571169 1_1:-53554991 None:intergenic
AGTACGTACCAATGAGTACA+AGG 0.576278 1_1:-53556582 None:intergenic
TGTTATATTGACTGCTGTGG+TGG 0.576783 1_1:+53556151 Msa0028570:CDS
AGCTCTGAAAATAGTGAGCA+AGG 0.577021 1_1:-53556544 None:intergenic
AGTATAGCACCAAACAAGAA+GGG 0.588101 1_1:-53556239 None:intergenic
ACCGGAAACTCAAGAAGATG+TGG 0.593472 1_1:+53554794 Msa0028570:exon
AAACACCGTTCTCTTGAATG+TGG 0.596475 1_1:+53556783 Msa0028570:three_prime_UTR
GACGGCGCCGACAGCGATGG+TGG 0.596967 1_1:-53554953 None:intergenic
ATTGTAGATAACTTGCCCAA+TGG 0.603009 1_1:-53556381 None:intergenic
AGCATCCACATTCAAGAGAA+CGG 0.605080 1_1:-53556788 None:intergenic
AAGAGCGAGACCAGCGCCGG+TGG 0.605231 1_1:-53555013 None:intergenic
TCGAAAGCCCCGAACTCCGA+TGG 0.608560 1_1:+53554884 Msa0028570:CDS
AGCTGTTATATTGACTGCTG+TGG 0.612381 1_1:+53556148 Msa0028570:CDS
TCGAGCATCATCGGGTAGAG+AGG 0.614144 1_1:-53554865 None:intergenic
GAAAGTGGAAATGGGACGAA+CGG 0.622665 1_1:-53554983 None:intergenic
GGGACGAACGGTGACGACGA+CGG 0.624706 1_1:-53554971 None:intergenic
GACGACGGCGCCGACAGCGA+TGG 0.625482 1_1:-53554956 None:intergenic
TTTCTCGACTGAGAAAGTGA+GGG 0.629414 1_1:-53554764 None:intergenic
GTAAAGAGCGAGACCAGCGC+CGG 0.640236 1_1:-53555016 None:intergenic
CTACTCGCCACCATCGCTGT+CGG 0.646355 1_1:+53554946 Msa0028570:CDS
TGGAATCGGAATCAACCCTA+CGG 0.653157 1_1:+53554814 Msa0028570:CDS
TGAAGGACCATCGGAGTTCG+GGG 0.666877 1_1:-53554891 None:intergenic
GCCGGTGGTAGCGAAGAAAG+TGG 0.667378 1_1:-53554998 None:intergenic
GTATAGCACCAAACAAGAAG+GGG 0.669417 1_1:-53556238 None:intergenic
TAATCCAGTACGAGAAGTAG+GGG 0.670117 1_1:-53556684 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAAATTGTTTGTTTTTG+CGG - chr1_1:53554667-53554686 None:intergenic 20.0%
!! TTTGATTCTGTAATAATTTG+AGG + chr1_1:53555419-53555438 Msa0028570:intron 20.0%
!!! CTAACTAGAATTTAACATTT+TGG + chr1_1:53555570-53555589 Msa0028570:intron 20.0%
!!! GATTTGAATTTTTTGTTATC+TGG + chr1_1:53555906-53555925 Msa0028570:intron 20.0%
!!! TTTTGCTTATTTTTTCCTAA+TGG + chr1_1:53556089-53556108 Msa0028570:intron 20.0%
!!! TTTGCTTATTTTTTCCTAAT+GGG + chr1_1:53556090-53556109 Msa0028570:intron 20.0%
!!! AATGAAATTGTTTGTTTTTG+CGG - chr1_1:53554667-53554686 None:intergenic 20.0%
!! TTTGATTCTGTAATAATTTG+AGG + chr1_1:53555419-53555438 Msa0028570:intron 20.0%
!!! CTAACTAGAATTTAACATTT+TGG + chr1_1:53555570-53555589 Msa0028570:intron 20.0%
!!! GATTTGAATTTTTTGTTATC+TGG + chr1_1:53555906-53555925 Msa0028570:intron 20.0%
!!! TTTTGCTTATTTTTTCCTAA+TGG + chr1_1:53556089-53556108 Msa0028570:intron 20.0%
!!! TTTGCTTATTTTTTCCTAAT+GGG + chr1_1:53556090-53556109 Msa0028570:intron 20.0%
!!! ATGAAATTGTTTGTTTTTGC+GGG - chr1_1:53554666-53554685 None:intergenic 25.0%
!!! AAAATTGGTTTTAGGGATTT+TGG - chr1_1:53554734-53554753 None:intergenic 25.0%
! ATCGAAATTCGAAGAAATTA+GGG - chr1_1:53555090-53555109 None:intergenic 25.0%
! AATCGAAATTCGAAGAAATT+AGG - chr1_1:53555091-53555110 None:intergenic 25.0%
! TTCTGATAATAGTAGTAAAG+AGG - chr1_1:53555164-53555183 None:intergenic 25.0%
! AAAGAAAGAAAGAAAGAAAG+CGG - chr1_1:53555293-53555312 None:intergenic 25.0%
!! TTTCTGAATTGTGTGTTATT+TGG + chr1_1:53555363-53555382 Msa0028570:intron 25.0%
!!! TGTGTTATTTGGTTTGAATT+TGG + chr1_1:53555374-53555393 Msa0028570:intron 25.0%
!!! GTGTTATTTGGTTTGAATTT+GGG + chr1_1:53555375-53555394 Msa0028570:intron 25.0%
!!! TGTTGTTTAATTTGTCGATT+TGG + chr1_1:53555445-53555464 Msa0028570:intron 25.0%
!! GATTTCTAGGTTGAAATTTA+GGG + chr1_1:53555480-53555499 Msa0028570:intron 25.0%
! TTATTTGTCATTGCAATTAG+AGG + chr1_1:53555505-53555524 Msa0028570:intron 25.0%
! ACAAAGAGAGATATTCATTT+AGG + chr1_1:53555534-53555553 Msa0028570:intron 25.0%
! ACCAAATGTGTTAATTGATT+AGG + chr1_1:53555781-53555800 Msa0028570:intron 25.0%
! ACCTAATCAATTAACACATT+TGG - chr1_1:53555785-53555804 None:intergenic 25.0%
! AAATGTGTTAATTGATTAGG+TGG + chr1_1:53555784-53555803 Msa0028570:intron 25.0%
! AATGTGTTAATTGATTAGGT+GGG + chr1_1:53555785-53555804 Msa0028570:intron 25.0%
!! TTTGTTATAAATCTTCTCTG+TGG + chr1_1:53555827-53555846 Msa0028570:intron 25.0%
!!! TTTTATTTCAATCGCACAAT+CGG - chr1_1:53555949-53555968 None:intergenic 25.0%
!!! AGAATTGCCTATTTTTATCT+GGG + chr1_1:53556065-53556084 Msa0028570:intron 25.0%
!!! TTATTTTTTCCTAATGGGAA+TGG + chr1_1:53556095-53556114 Msa0028570:intron 25.0%
!!! TATTTTTTCCTAATGGGAAT+GGG + chr1_1:53556096-53556115 Msa0028570:intron 25.0%
! TATTTCACTGTTTAATGTTC+TGG + chr1_1:53556318-53556337 Msa0028570:intron 25.0%
! AAGTTATCTACAATGATCTA+TGG + chr1_1:53556390-53556409 Msa0028570:CDS 25.0%
! ATTCCTATGATGAATTCATT+TGG + chr1_1:53556478-53556497 Msa0028570:CDS 25.0%
! TTCCTATGATGAATTCATTT+GGG + chr1_1:53556479-53556498 Msa0028570:CDS 25.0%
! TATCTGGTAATAAATCTTTG+TGG + chr1_1:53556650-53556669 Msa0028570:three_prime_UTR 25.0%
! TTAATACACATTACTGTAGT+TGG + chr1_1:53556725-53556744 Msa0028570:three_prime_UTR 25.0%
! TGATTTCCAATTCAATAGAA+AGG - chr1_1:53556885-53556904 None:intergenic 25.0%
! TCTATTGAATTGGAAATCAA+AGG + chr1_1:53556886-53556905 Msa0028570:three_prime_UTR 25.0%
!!! ATGAAATTGTTTGTTTTTGC+GGG - chr1_1:53554666-53554685 None:intergenic 25.0%
!!! AAAATTGGTTTTAGGGATTT+TGG - chr1_1:53554734-53554753 None:intergenic 25.0%
! ATCGAAATTCGAAGAAATTA+GGG - chr1_1:53555090-53555109 None:intergenic 25.0%
! AATCGAAATTCGAAGAAATT+AGG - chr1_1:53555091-53555110 None:intergenic 25.0%
! TTCTGATAATAGTAGTAAAG+AGG - chr1_1:53555164-53555183 None:intergenic 25.0%
! AAAGAAAGAAAGAAAGAAAG+CGG - chr1_1:53555293-53555312 None:intergenic 25.0%
!! TTTCTGAATTGTGTGTTATT+TGG + chr1_1:53555363-53555382 Msa0028570:intron 25.0%
!!! TGTGTTATTTGGTTTGAATT+TGG + chr1_1:53555374-53555393 Msa0028570:intron 25.0%
!!! GTGTTATTTGGTTTGAATTT+GGG + chr1_1:53555375-53555394 Msa0028570:intron 25.0%
!!! TGTTGTTTAATTTGTCGATT+TGG + chr1_1:53555445-53555464 Msa0028570:intron 25.0%
!! GATTTCTAGGTTGAAATTTA+GGG + chr1_1:53555480-53555499 Msa0028570:intron 25.0%
! TTATTTGTCATTGCAATTAG+AGG + chr1_1:53555505-53555524 Msa0028570:intron 25.0%
! ACAAAGAGAGATATTCATTT+AGG + chr1_1:53555534-53555553 Msa0028570:intron 25.0%
! ACCAAATGTGTTAATTGATT+AGG + chr1_1:53555781-53555800 Msa0028570:intron 25.0%
! ACCTAATCAATTAACACATT+TGG - chr1_1:53555785-53555804 None:intergenic 25.0%
! AAATGTGTTAATTGATTAGG+TGG + chr1_1:53555784-53555803 Msa0028570:intron 25.0%
! AATGTGTTAATTGATTAGGT+GGG + chr1_1:53555785-53555804 Msa0028570:intron 25.0%
!! TTTGTTATAAATCTTCTCTG+TGG + chr1_1:53555827-53555846 Msa0028570:intron 25.0%
!!! TTTTATTTCAATCGCACAAT+CGG - chr1_1:53555949-53555968 None:intergenic 25.0%
!!! AGAATTGCCTATTTTTATCT+GGG + chr1_1:53556065-53556084 Msa0028570:intron 25.0%
!!! TTATTTTTTCCTAATGGGAA+TGG + chr1_1:53556095-53556114 Msa0028570:intron 25.0%
!!! TATTTTTTCCTAATGGGAAT+GGG + chr1_1:53556096-53556115 Msa0028570:intron 25.0%
! TATTTCACTGTTTAATGTTC+TGG + chr1_1:53556318-53556337 Msa0028570:intron 25.0%
! AAGTTATCTACAATGATCTA+TGG + chr1_1:53556390-53556409 Msa0028570:CDS 25.0%
! ATTCCTATGATGAATTCATT+TGG + chr1_1:53556478-53556497 Msa0028570:CDS 25.0%
! TTCCTATGATGAATTCATTT+GGG + chr1_1:53556479-53556498 Msa0028570:CDS 25.0%
! TATCTGGTAATAAATCTTTG+TGG + chr1_1:53556650-53556669 Msa0028570:three_prime_UTR 25.0%
! TTAATACACATTACTGTAGT+TGG + chr1_1:53556725-53556744 Msa0028570:three_prime_UTR 25.0%
! TGATTTCCAATTCAATAGAA+AGG - chr1_1:53556885-53556904 None:intergenic 25.0%
! TCTATTGAATTGGAAATCAA+AGG + chr1_1:53556886-53556905 Msa0028570:three_prime_UTR 25.0%
!!! ATGCGAGAAAATTGGTTTTA+GGG - chr1_1:53554741-53554760 None:intergenic 30.0%
!!! AATGCGAGAAAATTGGTTTT+AGG - chr1_1:53554742-53554761 None:intergenic 30.0%
! CGATTTCTAGGTTGAAATTT+AGG + chr1_1:53555479-53555498 Msa0028570:intron 30.0%
AGAGATATTCATTTAGGAAC+TGG + chr1_1:53555540-53555559 Msa0028570:intron 30.0%
ACATGTTGAATTGAAGAAGT+CGG + chr1_1:53555731-53555750 Msa0028570:intron 30.0%
AAAGGAAAGAACTAACCAAT+AGG - chr1_1:53555868-53555887 None:intergenic 30.0%
TTCTTTCCTTTCATTGAGAA+TGG + chr1_1:53555877-53555896 Msa0028570:intron 30.0%
!!! GAGAATTGCCTATTTTTATC+TGG + chr1_1:53556064-53556083 Msa0028570:intron 30.0%
GCAAAATCCCAGATAAAAAT+AGG - chr1_1:53556075-53556094 None:intergenic 30.0%
!!! ATTTTTTCCTAATGGGAATG+GGG + chr1_1:53556097-53556116 Msa0028570:intron 30.0%
GTATACAGAGAAAGTAATTC+TGG + chr1_1:53556124-53556143 Msa0028570:intron 30.0%
! ATACTAGTTCTTATGGTCTT+TGG + chr1_1:53556257-53556276 Msa0028570:CDS 30.0%
! TACTAGTTCTTATGGTCTTT+GGG + chr1_1:53556258-53556277 Msa0028570:CDS 30.0%
! TTGCAGATTTTCTTTCCATT+GGG + chr1_1:53556366-53556385 Msa0028570:intron 30.0%
!! GTTGATGATGTCCAAATATA+AGG - chr1_1:53556514-53556533 None:intergenic 30.0%
!! TACTAGTTGTTTTCTGATGT+GGG + chr1_1:53556601-53556620 Msa0028570:three_prime_UTR 30.0%
CTGGATTATCACTATTGTTA+AGG + chr1_1:53556699-53556718 Msa0028570:three_prime_UTR 30.0%
!!! TAGCTTTGATTTTGAACACT+CGG - chr1_1:53556842-53556861 None:intergenic 30.0%
TCAAAGCTATTATGATTGCT+AGG + chr1_1:53556853-53556872 Msa0028570:three_prime_UTR 30.0%
CAAAGCTATTATGATTGCTA+GGG + chr1_1:53556854-53556873 Msa0028570:three_prime_UTR 30.0%
GTTGATCCTTTCTATTGAAT+TGG + chr1_1:53556876-53556895 Msa0028570:three_prime_UTR 30.0%
!!! TGAAATTGTTTGTTTTTGCG+GGG - chr1_1:53554665-53554684 None:intergenic 30.0%
!!! ATGCGAGAAAATTGGTTTTA+GGG - chr1_1:53554741-53554760 None:intergenic 30.0%
!!! AATGCGAGAAAATTGGTTTT+AGG - chr1_1:53554742-53554761 None:intergenic 30.0%
! CGATTTCTAGGTTGAAATTT+AGG + chr1_1:53555479-53555498 Msa0028570:intron 30.0%
AGAGATATTCATTTAGGAAC+TGG + chr1_1:53555540-53555559 Msa0028570:intron 30.0%
ACATGTTGAATTGAAGAAGT+CGG + chr1_1:53555731-53555750 Msa0028570:intron 30.0%
AAAGGAAAGAACTAACCAAT+AGG - chr1_1:53555868-53555887 None:intergenic 30.0%
TTCTTTCCTTTCATTGAGAA+TGG + chr1_1:53555877-53555896 Msa0028570:intron 30.0%
!!! GAGAATTGCCTATTTTTATC+TGG + chr1_1:53556064-53556083 Msa0028570:intron 30.0%
GCAAAATCCCAGATAAAAAT+AGG - chr1_1:53556075-53556094 None:intergenic 30.0%
!!! ATTTTTTCCTAATGGGAATG+GGG + chr1_1:53556097-53556116 Msa0028570:intron 30.0%
GTATACAGAGAAAGTAATTC+TGG + chr1_1:53556124-53556143 Msa0028570:intron 30.0%
! ATACTAGTTCTTATGGTCTT+TGG + chr1_1:53556257-53556276 Msa0028570:CDS 30.0%
! TACTAGTTCTTATGGTCTTT+GGG + chr1_1:53556258-53556277 Msa0028570:CDS 30.0%
! TTGCAGATTTTCTTTCCATT+GGG + chr1_1:53556366-53556385 Msa0028570:intron 30.0%
!! GTTGATGATGTCCAAATATA+AGG - chr1_1:53556514-53556533 None:intergenic 30.0%
!! TACTAGTTGTTTTCTGATGT+GGG + chr1_1:53556601-53556620 Msa0028570:three_prime_UTR 30.0%
CTGGATTATCACTATTGTTA+AGG + chr1_1:53556699-53556718 Msa0028570:three_prime_UTR 30.0%
!!! TAGCTTTGATTTTGAACACT+CGG - chr1_1:53556842-53556861 None:intergenic 30.0%
TCAAAGCTATTATGATTGCT+AGG + chr1_1:53556853-53556872 Msa0028570:three_prime_UTR 30.0%
CAAAGCTATTATGATTGCTA+GGG + chr1_1:53556854-53556873 Msa0028570:three_prime_UTR 30.0%
GTTGATCCTTTCTATTGAAT+TGG + chr1_1:53556876-53556895 Msa0028570:three_prime_UTR 30.0%
AACTCAAGAAGATGTGGAAT+CGG + chr1_1:53554800-53554819 Msa0028570:exon 35.0%
! GATGTAGACTTTTCTGATGA+AGG - chr1_1:53554911-53554930 None:intergenic 35.0%
GCAAGCAGAAGGTAATTAAT+CGG - chr1_1:53555191-53555210 None:intergenic 35.0%
GATTAATTACCTTCTGCTTG+CGG + chr1_1:53555190-53555209 Msa0028570:intron 35.0%
AGAAAGAAAGAAAGCGGAAA+TGG - chr1_1:53555287-53555306 None:intergenic 35.0%
! GGTTTGAATTTGGGATTGAT+TGG + chr1_1:53555384-53555403 Msa0028570:intron 35.0%
GAACTTGAGTTTCGATTTCT+AGG + chr1_1:53555467-53555486 Msa0028570:intron 35.0%
GACTTCTTCAATTCAACATG+TGG - chr1_1:53555732-53555751 None:intergenic 35.0%
TAAATCTTCTCTGTGGTTAG+TGG + chr1_1:53555834-53555853 Msa0028570:intron 35.0%
!! TTAGTGGAGTTTTGACCTAT+TGG + chr1_1:53555850-53555869 Msa0028570:intron 35.0%
!!! TACGAGTTACCTTGCTATTT+TGG + chr1_1:53556002-53556021 Msa0028570:intron 35.0%
TTACACAAGCCAAAATAGCA+AGG - chr1_1:53556014-53556033 None:intergenic 35.0%
! TCTGACTCTCTACACATTTT+GGG + chr1_1:53556181-53556200 Msa0028570:CDS 35.0%
AGTATAGCACCAAACAAGAA+GGG - chr1_1:53556242-53556261 None:intergenic 35.0%
TAGTATAGCACCAAACAAGA+AGG - chr1_1:53556243-53556262 None:intergenic 35.0%
!! TGGTGCTATACTAGTTCTTA+TGG + chr1_1:53556250-53556269 Msa0028570:CDS 35.0%
! CTTGCAGATTTTCTTTCCAT+TGG + chr1_1:53556365-53556384 Msa0028570:intron 35.0%
! ATTGTAGATAACTTGCCCAA+TGG - chr1_1:53556384-53556403 None:intergenic 35.0%
TACAATGATCTATGGTTGCT+TGG + chr1_1:53556398-53556417 Msa0028570:CDS 35.0%
TTGGCAGCAATTATATTCTG+TGG + chr1_1:53556417-53556436 Msa0028570:CDS 35.0%
AGCCCAAATGAATTCATCAT+AGG - chr1_1:53556484-53556503 None:intergenic 35.0%
!! GTACTAGTTGTTTTCTGATG+TGG + chr1_1:53556600-53556619 Msa0028570:three_prime_UTR 35.0%
!! ACTAGTTGTTTTCTGATGTG+GGG + chr1_1:53556602-53556621 Msa0028570:three_prime_UTR 35.0%
TACGAAAACACGTTCTTATC+TGG + chr1_1:53556634-53556653 Msa0028570:three_prime_UTR 35.0%
ATAATCCAGTACGAGAAGTA+GGG - chr1_1:53556688-53556707 None:intergenic 35.0%
!! AGCTTTGATTTTGAACACTC+GGG - chr1_1:53556841-53556860 None:intergenic 35.0%
AACTCAAGAAGATGTGGAAT+CGG + chr1_1:53554800-53554819 Msa0028570:exon 35.0%
! GATGTAGACTTTTCTGATGA+AGG - chr1_1:53554911-53554930 None:intergenic 35.0%
GCAAGCAGAAGGTAATTAAT+CGG - chr1_1:53555191-53555210 None:intergenic 35.0%
GATTAATTACCTTCTGCTTG+CGG + chr1_1:53555190-53555209 Msa0028570:intron 35.0%
AGAAAGAAAGAAAGCGGAAA+TGG - chr1_1:53555287-53555306 None:intergenic 35.0%
! GGTTTGAATTTGGGATTGAT+TGG + chr1_1:53555384-53555403 Msa0028570:intron 35.0%
GAACTTGAGTTTCGATTTCT+AGG + chr1_1:53555467-53555486 Msa0028570:intron 35.0%
GACTTCTTCAATTCAACATG+TGG - chr1_1:53555732-53555751 None:intergenic 35.0%
TAAATCTTCTCTGTGGTTAG+TGG + chr1_1:53555834-53555853 Msa0028570:intron 35.0%
!! TTAGTGGAGTTTTGACCTAT+TGG + chr1_1:53555850-53555869 Msa0028570:intron 35.0%
!!! TACGAGTTACCTTGCTATTT+TGG + chr1_1:53556002-53556021 Msa0028570:intron 35.0%
TTACACAAGCCAAAATAGCA+AGG - chr1_1:53556014-53556033 None:intergenic 35.0%
! TCTGACTCTCTACACATTTT+GGG + chr1_1:53556181-53556200 Msa0028570:CDS 35.0%
AGTATAGCACCAAACAAGAA+GGG - chr1_1:53556242-53556261 None:intergenic 35.0%
TAGTATAGCACCAAACAAGA+AGG - chr1_1:53556243-53556262 None:intergenic 35.0%
!! TGGTGCTATACTAGTTCTTA+TGG + chr1_1:53556250-53556269 Msa0028570:CDS 35.0%
! CTTGCAGATTTTCTTTCCAT+TGG + chr1_1:53556365-53556384 Msa0028570:intron 35.0%
! ATTGTAGATAACTTGCCCAA+TGG - chr1_1:53556384-53556403 None:intergenic 35.0%
TACAATGATCTATGGTTGCT+TGG + chr1_1:53556398-53556417 Msa0028570:CDS 35.0%
TTGGCAGCAATTATATTCTG+TGG + chr1_1:53556417-53556436 Msa0028570:CDS 35.0%
AGCCCAAATGAATTCATCAT+AGG - chr1_1:53556484-53556503 None:intergenic 35.0%
!! GTACTAGTTGTTTTCTGATG+TGG + chr1_1:53556600-53556619 Msa0028570:three_prime_UTR 35.0%
!! ACTAGTTGTTTTCTGATGTG+GGG + chr1_1:53556602-53556621 Msa0028570:three_prime_UTR 35.0%
TACGAAAACACGTTCTTATC+TGG + chr1_1:53556634-53556653 Msa0028570:three_prime_UTR 35.0%
ATAATCCAGTACGAGAAGTA+GGG - chr1_1:53556688-53556707 None:intergenic 35.0%
!! AGCTTTGATTTTGAACACTC+GGG - chr1_1:53556841-53556860 None:intergenic 35.0%
GAGGGAAAATGCGAGAAAAT+TGG - chr1_1:53554749-53554768 None:intergenic 40.0%
TTTCTCGACTGAGAAAGTGA+GGG - chr1_1:53554767-53554786 None:intergenic 40.0%
! TTTTCTCGACTGAGAAAGTG+AGG - chr1_1:53554768-53554787 None:intergenic 40.0%
TCCACATCTTCTTGAGTTTC+CGG - chr1_1:53554798-53554817 None:intergenic 40.0%
! CTTTTCTGATGAAGGACCAT+CGG - chr1_1:53554903-53554922 None:intergenic 40.0%
GTAGCGAAGAAAGTGGAAAT+GGG - chr1_1:53554994-53555013 None:intergenic 40.0%
!! CTCTCGCTTTCTTTTGTTGT+TGG + chr1_1:53555221-53555240 Msa0028570:intron 40.0%
TAATCACATGTGCTATGTGC+TGG + chr1_1:53555701-53555720 Msa0028570:intron 40.0%
TCAGCACCATTCTCAATGAA+AGG - chr1_1:53555886-53555905 None:intergenic 40.0%
TACAAAACCCCATTCCCATT+AGG - chr1_1:53556107-53556126 None:intergenic 40.0%
! AGCTGTTATATTGACTGCTG+TGG + chr1_1:53556148-53556167 Msa0028570:CDS 40.0%
! TGTTATATTGACTGCTGTGG+TGG + chr1_1:53556151-53556170 Msa0028570:CDS 40.0%
! CTCTGACTCTCTACACATTT+TGG + chr1_1:53556180-53556199 Msa0028570:CDS 40.0%
GGCTATGATTTCAACTTCCT+TGG + chr1_1:53556215-53556234 Msa0028570:CDS 40.0%
GTATAGCACCAAACAAGAAG+GGG - chr1_1:53556241-53556260 None:intergenic 40.0%
!! TATGGTCTTTGGGATGATTC+AGG + chr1_1:53556268-53556287 Msa0028570:CDS 40.0%
! TCAAGTTGTCTGTATCGTAC+AGG - chr1_1:53556449-53556468 None:intergenic 40.0%
GGCTTCTGTCTCCTTATATT+TGG + chr1_1:53556500-53556519 Msa0028570:CDS 40.0%
TGAAAATAGTGAGCAAGGAC+AGG - chr1_1:53556542-53556561 None:intergenic 40.0%
!! AGCTCTGAAAATAGTGAGCA+AGG - chr1_1:53556547-53556566 None:intergenic 40.0%
GTTGAAGTCCTTGTACTCAT+TGG + chr1_1:53556574-53556593 Msa0028570:exon 40.0%
AGTACGTACCAATGAGTACA+AGG - chr1_1:53556585-53556604 None:intergenic 40.0%
TAATCCAGTACGAGAAGTAG+GGG - chr1_1:53556687-53556706 None:intergenic 40.0%
GATAATCCAGTACGAGAAGT+AGG - chr1_1:53556689-53556708 None:intergenic 40.0%
AAACACCGTTCTCTTGAATG+TGG + chr1_1:53556783-53556802 Msa0028570:three_prime_UTR 40.0%
AGCATCCACATTCAAGAGAA+CGG - chr1_1:53556791-53556810 None:intergenic 40.0%
!! GCTTTGATTTTGAACACTCG+GGG - chr1_1:53556840-53556859 None:intergenic 40.0%
GAGGGAAAATGCGAGAAAAT+TGG - chr1_1:53554749-53554768 None:intergenic 40.0%
TTTCTCGACTGAGAAAGTGA+GGG - chr1_1:53554767-53554786 None:intergenic 40.0%
! TTTTCTCGACTGAGAAAGTG+AGG - chr1_1:53554768-53554787 None:intergenic 40.0%
TCCACATCTTCTTGAGTTTC+CGG - chr1_1:53554798-53554817 None:intergenic 40.0%
! CTTTTCTGATGAAGGACCAT+CGG - chr1_1:53554903-53554922 None:intergenic 40.0%
GTAGCGAAGAAAGTGGAAAT+GGG - chr1_1:53554994-53555013 None:intergenic 40.0%
!! CTCTCGCTTTCTTTTGTTGT+TGG + chr1_1:53555221-53555240 Msa0028570:intron 40.0%
TAATCACATGTGCTATGTGC+TGG + chr1_1:53555701-53555720 Msa0028570:intron 40.0%
TCAGCACCATTCTCAATGAA+AGG - chr1_1:53555886-53555905 None:intergenic 40.0%
TACAAAACCCCATTCCCATT+AGG - chr1_1:53556107-53556126 None:intergenic 40.0%
! AGCTGTTATATTGACTGCTG+TGG + chr1_1:53556148-53556167 Msa0028570:CDS 40.0%
! TGTTATATTGACTGCTGTGG+TGG + chr1_1:53556151-53556170 Msa0028570:CDS 40.0%
! CTCTGACTCTCTACACATTT+TGG + chr1_1:53556180-53556199 Msa0028570:CDS 40.0%
GGCTATGATTTCAACTTCCT+TGG + chr1_1:53556215-53556234 Msa0028570:CDS 40.0%
GTATAGCACCAAACAAGAAG+GGG - chr1_1:53556241-53556260 None:intergenic 40.0%
!! TATGGTCTTTGGGATGATTC+AGG + chr1_1:53556268-53556287 Msa0028570:CDS 40.0%
! TCAAGTTGTCTGTATCGTAC+AGG - chr1_1:53556449-53556468 None:intergenic 40.0%
GGCTTCTGTCTCCTTATATT+TGG + chr1_1:53556500-53556519 Msa0028570:CDS 40.0%
TGAAAATAGTGAGCAAGGAC+AGG - chr1_1:53556542-53556561 None:intergenic 40.0%
!! AGCTCTGAAAATAGTGAGCA+AGG - chr1_1:53556547-53556566 None:intergenic 40.0%
GTTGAAGTCCTTGTACTCAT+TGG + chr1_1:53556574-53556593 Msa0028570:exon 40.0%
AGTACGTACCAATGAGTACA+AGG - chr1_1:53556585-53556604 None:intergenic 40.0%
TAATCCAGTACGAGAAGTAG+GGG - chr1_1:53556687-53556706 None:intergenic 40.0%
GATAATCCAGTACGAGAAGT+AGG - chr1_1:53556689-53556708 None:intergenic 40.0%
AAACACCGTTCTCTTGAATG+TGG + chr1_1:53556783-53556802 Msa0028570:three_prime_UTR 40.0%
AGCATCCACATTCAAGAGAA+CGG - chr1_1:53556791-53556810 None:intergenic 40.0%
!! GCTTTGATTTTGAACACTCG+GGG - chr1_1:53556840-53556859 None:intergenic 40.0%
!! CTTTTGTTTGCTTGCGTGAG+AGG - chr1_1:53554706-53554725 None:intergenic 45.0%
CAGTCGAGAAAAAGCTTCAC+CGG + chr1_1:53554776-53554795 Msa0028570:five_prime_UTR 45.0%
ACCGGAAACTCAAGAAGATG+TGG + chr1_1:53554794-53554813 Msa0028570:exon 45.0%
TGGAATCGGAATCAACCCTA+CGG + chr1_1:53554814-53554833 Msa0028570:CDS 45.0%
!!! TCCACATCGGTTTTTCCGTA+GGG - chr1_1:53554832-53554851 None:intergenic 45.0%
!!! TTCCACATCGGTTTTTCCGT+AGG - chr1_1:53554833-53554852 None:intergenic 45.0%
GGAAAAACCGATGTGGAAAC+CGG + chr1_1:53554835-53554854 Msa0028570:CDS 45.0%
! TCTTGAACCGGTTTCCACAT+CGG - chr1_1:53554845-53554864 None:intergenic 45.0%
GAAAGTGGAAATGGGACGAA+CGG - chr1_1:53554986-53555005 None:intergenic 45.0%
GGTAGCGAAGAAAGTGGAAA+TGG - chr1_1:53554995-53555014 None:intergenic 45.0%
TTGAGCTGTGCTTTCACTAG+CGG + chr1_1:53555245-53555264 Msa0028570:intron 45.0%
AGGTGGGTGATGTTAAGACA+AGG + chr1_1:53555801-53555820 Msa0028570:intron 45.0%
! ACATTTTGGGCTGCAAGTAG+AGG + chr1_1:53556194-53556213 Msa0028570:CDS 45.0%
TAGTGAGCAAGGACAGGAAA+AGG - chr1_1:53556536-53556555 None:intergenic 45.0%
! GTTTTCTGATGTGGGGTTAG+TGG + chr1_1:53556609-53556628 Msa0028570:three_prime_UTR 45.0%
! TTGATTTTGAACACTCGGGG+AGG - chr1_1:53556837-53556856 None:intergenic 45.0%
!! CTTTTGTTTGCTTGCGTGAG+AGG - chr1_1:53554706-53554725 None:intergenic 45.0%
CAGTCGAGAAAAAGCTTCAC+CGG + chr1_1:53554776-53554795 Msa0028570:five_prime_UTR 45.0%
ACCGGAAACTCAAGAAGATG+TGG + chr1_1:53554794-53554813 Msa0028570:exon 45.0%
TGGAATCGGAATCAACCCTA+CGG + chr1_1:53554814-53554833 Msa0028570:CDS 45.0%
!!! TCCACATCGGTTTTTCCGTA+GGG - chr1_1:53554832-53554851 None:intergenic 45.0%
!!! TTCCACATCGGTTTTTCCGT+AGG - chr1_1:53554833-53554852 None:intergenic 45.0%
GGAAAAACCGATGTGGAAAC+CGG + chr1_1:53554835-53554854 Msa0028570:CDS 45.0%
! TCTTGAACCGGTTTCCACAT+CGG - chr1_1:53554845-53554864 None:intergenic 45.0%
GAAAGTGGAAATGGGACGAA+CGG - chr1_1:53554986-53555005 None:intergenic 45.0%
GGTAGCGAAGAAAGTGGAAA+TGG - chr1_1:53554995-53555014 None:intergenic 45.0%
TTGAGCTGTGCTTTCACTAG+CGG + chr1_1:53555245-53555264 Msa0028570:intron 45.0%
AGGTGGGTGATGTTAAGACA+AGG + chr1_1:53555801-53555820 Msa0028570:intron 45.0%
! ACATTTTGGGCTGCAAGTAG+AGG + chr1_1:53556194-53556213 Msa0028570:CDS 45.0%
TAGTGAGCAAGGACAGGAAA+AGG - chr1_1:53556536-53556555 None:intergenic 45.0%
! GTTTTCTGATGTGGGGTTAG+TGG + chr1_1:53556609-53556628 Msa0028570:three_prime_UTR 45.0%
! TTGATTTTGAACACTCGGGG+AGG - chr1_1:53556837-53556856 None:intergenic 45.0%
!!! ATATTTTAAAAAAATAGAAA+TGG - chr1_1:53556938-53556957 None:intergenic 5.0%
!!! ATTTCTATTTTTTTAAAATA+TGG + chr1_1:53556937-53556956 Msa0028570:three_prime_UTR 5.0%
!!! TTTCTATTTTTTTAAAATAT+GGG + chr1_1:53556938-53556957 Msa0028570:three_prime_UTR 5.0%
!!! ATATTTTAAAAAAATAGAAA+TGG - chr1_1:53556938-53556957 None:intergenic 5.0%
!!! ATTTCTATTTTTTTAAAATA+TGG + chr1_1:53556937-53556956 Msa0028570:three_prime_UTR 5.0%
!!! TTTCTATTTTTTTAAAATAT+GGG + chr1_1:53556938-53556957 Msa0028570:three_prime_UTR 5.0%
ACCCTACGGAAAAACCGATG+TGG + chr1_1:53554828-53554847 Msa0028570:CDS 50.0%
ATGAAGGACCATCGGAGTTC+GGG - chr1_1:53554895-53554914 None:intergenic 50.0%
GATGAAGGACCATCGGAGTT+CGG - chr1_1:53554896-53554915 None:intergenic 50.0%
TCCACTTTCTTCGCTACCAC+CGG + chr1_1:53554997-53555016 Msa0028570:CDS 50.0%
! AGCGCAACGCACTGATGAAA+GGG - chr1_1:53555059-53555078 None:intergenic 50.0%
! AAGCGCAACGCACTGATGAA+AGG - chr1_1:53555060-53555079 None:intergenic 50.0%
GAGTGAAAACCGCAAGCAGA+AGG - chr1_1:53555202-53555221 None:intergenic 50.0%
! AGTTGTGCTGCTATGCAGCA+CGG + chr1_1:53555604-53555623 Msa0028570:intron 50.0%
! GTGGCATTGAGACTGACACA+TGG + chr1_1:53555635-53555654 Msa0028570:intron 50.0%
TTCCTTGGCCCCTTCTTGTT+TGG + chr1_1:53556230-53556249 Msa0028570:CDS 50.0%
TACGAGAAGTAGGGGCAATC+AGG - chr1_1:53556679-53556698 None:intergenic 50.0%
ATTGCCCCTACTTCTCGTAC+TGG + chr1_1:53556680-53556699 Msa0028570:three_prime_UTR 50.0%
ACCCTACGGAAAAACCGATG+TGG + chr1_1:53554828-53554847 Msa0028570:CDS 50.0%
ATGAAGGACCATCGGAGTTC+GGG - chr1_1:53554895-53554914 None:intergenic 50.0%
GATGAAGGACCATCGGAGTT+CGG - chr1_1:53554896-53554915 None:intergenic 50.0%
TCCACTTTCTTCGCTACCAC+CGG + chr1_1:53554997-53555016 Msa0028570:CDS 50.0%
! AGCGCAACGCACTGATGAAA+GGG - chr1_1:53555059-53555078 None:intergenic 50.0%
! AAGCGCAACGCACTGATGAA+AGG - chr1_1:53555060-53555079 None:intergenic 50.0%
GAGTGAAAACCGCAAGCAGA+AGG - chr1_1:53555202-53555221 None:intergenic 50.0%
! AGTTGTGCTGCTATGCAGCA+CGG + chr1_1:53555604-53555623 Msa0028570:intron 50.0%
! GTGGCATTGAGACTGACACA+TGG + chr1_1:53555635-53555654 Msa0028570:intron 50.0%
TTCCTTGGCCCCTTCTTGTT+TGG + chr1_1:53556230-53556249 Msa0028570:CDS 50.0%
TACGAGAAGTAGGGGCAATC+AGG - chr1_1:53556679-53556698 None:intergenic 50.0%
ATTGCCCCTACTTCTCGTAC+TGG + chr1_1:53556680-53556699 Msa0028570:three_prime_UTR 50.0%
CGGGTAGAGAGGTCTTGAAC+CGG - chr1_1:53554857-53554876 None:intergenic 55.0%
TCGAGCATCATCGGGTAGAG+AGG - chr1_1:53554868-53554887 None:intergenic 55.0%
TCGGGGCTTTCGAGCATCAT+CGG - chr1_1:53554877-53554896 None:intergenic 55.0%
TGAAGGACCATCGGAGTTCG+GGG - chr1_1:53554894-53554913 None:intergenic 55.0%
GCTGCTATGCAGCACGGATA+CGG + chr1_1:53555610-53555629 Msa0028570:intron 55.0%
ATGCAGCACGGATACGGTAG+TGG + chr1_1:53555616-53555635 Msa0028570:intron 55.0%
CACCAAACAAGAAGGGGCCA+AGG - chr1_1:53556235-53556254 None:intergenic 55.0%
CGGGTAGAGAGGTCTTGAAC+CGG - chr1_1:53554857-53554876 None:intergenic 55.0%
TCGAGCATCATCGGGTAGAG+AGG - chr1_1:53554868-53554887 None:intergenic 55.0%
TCGGGGCTTTCGAGCATCAT+CGG - chr1_1:53554877-53554896 None:intergenic 55.0%
TGAAGGACCATCGGAGTTCG+GGG - chr1_1:53554894-53554913 None:intergenic 55.0%
GCTGCTATGCAGCACGGATA+CGG + chr1_1:53555610-53555629 Msa0028570:intron 55.0%
ATGCAGCACGGATACGGTAG+TGG + chr1_1:53555616-53555635 Msa0028570:intron 55.0%
CACCAAACAAGAAGGGGCCA+AGG - chr1_1:53556235-53556254 None:intergenic 55.0%
CGGGGCTTTCGAGCATCATC+GGG - chr1_1:53554876-53554895 None:intergenic 60.0%
TCGAAAGCCCCGAACTCCGA+TGG + chr1_1:53554884-53554903 Msa0028570:CDS 60.0%
CTACTCGCCACCATCGCTGT+CGG + chr1_1:53554946-53554965 Msa0028570:CDS 60.0%
! GCCGGTGGTAGCGAAGAAAG+TGG - chr1_1:53555001-53555020 None:intergenic 60.0%
GTAAAGAGCGAGACCAGCGC+CGG - chr1_1:53555019-53555038 None:intergenic 60.0%
CGGGGCTTTCGAGCATCATC+GGG - chr1_1:53554876-53554895 None:intergenic 60.0%
TCGAAAGCCCCGAACTCCGA+TGG + chr1_1:53554884-53554903 Msa0028570:CDS 60.0%
CTACTCGCCACCATCGCTGT+CGG + chr1_1:53554946-53554965 Msa0028570:CDS 60.0%
! GCCGGTGGTAGCGAAGAAAG+TGG - chr1_1:53555001-53555020 None:intergenic 60.0%
GTAAAGAGCGAGACCAGCGC+CGG - chr1_1:53555019-53555038 None:intergenic 60.0%
GGGACGAACGGTGACGACGA+CGG - chr1_1:53554974-53554993 None:intergenic 65.0%
TTCTTCGCTACCACCGGCGC+TGG + chr1_1:53555003-53555022 Msa0028570:CDS 65.0%
GGGACGAACGGTGACGACGA+CGG - chr1_1:53554974-53554993 None:intergenic 65.0%
TTCTTCGCTACCACCGGCGC+TGG + chr1_1:53555003-53555022 Msa0028570:CDS 65.0%
! AAGAGCGAGACCAGCGCCGG+TGG - chr1_1:53555016-53555035 None:intergenic 70.0%
! AAGAGCGAGACCAGCGCCGG+TGG - chr1_1:53555016-53555035 None:intergenic 70.0%
!! GACGGCGCCGACAGCGATGG+TGG - chr1_1:53554956-53554975 None:intergenic 75.0%
!! GACGACGGCGCCGACAGCGA+TGG - chr1_1:53554959-53554978 None:intergenic 75.0%
!! GACGGCGCCGACAGCGATGG+TGG - chr1_1:53554956-53554975 None:intergenic 75.0%
!! GACGACGGCGCCGACAGCGA+TGG - chr1_1:53554959-53554978 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 53554663 53556970 53554663 ID=Msa0028570;Name=Msa0028570
chr1_1 mRNA 53554663 53556970 53554663 ID=Msa0028570-mRNA-1;Parent=Msa0028570;Name=Msa0028570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=148|0.5|1|1|1|1|3|392|206
chr1_1 exon 53554663 53555066 53554663 ID=Msa0028570-mRNA-1:exon:15735;Parent=Msa0028570-mRNA-1
chr1_1 exon 53556132 53556289 53556132 ID=Msa0028570-mRNA-1:exon:15736;Parent=Msa0028570-mRNA-1
chr1_1 exon 53556372 53556970 53556372 ID=Msa0028570-mRNA-1:exon:15737;Parent=Msa0028570-mRNA-1
chr1_1 five_prime_UTR 53554663 53554810 53554663 ID=Msa0028570-mRNA-1:five_prime_utr;Parent=Msa0028570-mRNA-1
chr1_1 CDS 53554811 53555066 53554811 ID=Msa0028570-mRNA-1:cds;Parent=Msa0028570-mRNA-1
chr1_1 CDS 53556132 53556289 53556132 ID=Msa0028570-mRNA-1:cds;Parent=Msa0028570-mRNA-1
chr1_1 CDS 53556372 53556578 53556372 ID=Msa0028570-mRNA-1:cds;Parent=Msa0028570-mRNA-1
chr1_1 three_prime_UTR 53556579 53556970 53556579 ID=Msa0028570-mRNA-1:three_prime_utr;Parent=Msa0028570-mRNA-1
Gene Sequence

>Msa0028570

ATGTGGAATCGGAATCAACCCTACGGAAAAACCGATGTGGAAACCGGTTCAAGACCTCTCTACCCGATGATGCTCGAAAGCCCCGAACTCCGATGGTCCTTCATCAGAAAAGTCTACATCATCATCGCTCTTCAACTACTCGCCACCATCGCTGTCGGCGCCGTCGTCGTCACCGTTCGTCCCATTTCCACTTTCTTCGCTACCACCGGCGCTGGTCTCGCTCTTTACATCGTTCTCATCTTCGTCCCTTTCATCAAGAAAGTAATTCTGGAAGCTGTTATATTGACTGCTGTGGTGGTGATAGCTCTGACTCTCTACACATTTTGGGCTGCAAGTAGAGGCTATGATTTCAACTTCCTTGGCCCCTTCTTGTTTGGTGCTATACTAGTTCTTATGGTCTTTGGGATGATTCAGATTTTCTTTCCATTGGGCAAGTTATCTACAATGATCTATGGTTGCTTGGCAGCAATTATATTCTGTGGTTACATCCTGTACGATACAGACAACTTGATCAAGAGATATTCCTATGATGAATTCATTTGGGCTTCTGTCTCCTTATATTTGGACATCATCAACCTTTTCCTGTCCTTGCTCACTATTTTCAGAGCTGCTGATAGTTGA
Protein sequence

>Msa0028570

MWNRNQPYGKTDVETGSRPLYPMMLESPELRWSFIRKVYIIIALQLLATIAVGAVVVTVRPISTFFATTGAGLALYIVLIFVPFIKKVILEAVILTAVVVIALTLYTFWAASRGYDFNFLGPFLFGAILVLMVFGMIQIFFPLGKLSTMIYGCLAAIIFCGYILYDTDNLIKRYSYDEFIWASVSLYLDIINLFLSLLTIFRAADS*