AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168640 MtrunA17_Chr1g0185191 99.180 244 2 0 1 244 1 244 2.03e-176 484
Msa0168640 MtrunA17_Chr7g0260311 76.170 235 56 0 9 243 3 237 2.96e-115 329
Msa0168640 MtrunA17_Chr7g0260221 59.483 232 94 0 8 239 2 233 1.69e-86 256
Msa0168640 MtrunA17_Chr7g0260241 56.034 232 102 0 8 239 2 233 3.11e-84 251
Msa0168640 MtrunA17_Chr7g0260301 57.322 239 96 3 10 242 4 242 5.67e-83 248
Msa0168640 MtrunA17_Chr1g0209611 50.211 237 113 1 9 240 2 238 9.19e-77 232
Msa0168640 MtrunA17_Chr2g0287051 50.855 234 110 3 12 244 28 257 9.26e-74 225
Msa0168640 MtrunA17_Chr7g0260251 53.719 121 42 2 125 243 3 111 3.62e-30 108
Msa0168640 MtrunA17_Chr7g0260271 57.143 91 37 1 130 220 26 114 2.19e-23 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168640 AT1G03070.2 76.518 247 54 1 1 243 1 247 3.39e-137 385
Msa0168640 AT1G03070.3 76.518 247 54 1 1 243 1 247 3.39e-137 385
Msa0168640 AT1G03070.1 76.518 247 54 1 1 243 1 247 3.39e-137 385
Msa0168640 AT3G63310.1 74.590 244 57 1 1 244 1 239 5.31e-129 364
Msa0168640 AT4G02690.1 74.286 245 59 2 1 241 1 245 4.90e-123 350
Msa0168640 AT4G02690.2 62.449 245 50 3 1 241 1 207 2.85e-90 265
Msa0168640 AT4G14730.1 56.957 230 98 1 10 238 3 232 1.60e-89 264
Msa0168640 AT4G15470.1 52.419 248 111 5 1 244 12 256 1.99e-81 244

Find 77 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTCTGTCTCCTTATATT+TGG 0.136616 1_4:+51482643 Msa0168640:CDS
TCCACATCTTCTTGAGTTTC+CGG 0.192644 1_4:-51480931 None:intergenic
ATACTAGTTCTTATGGTCTT+TGG 0.193055 1_4:+51482400 Msa0168640:CDS
CTCTGACTCTCTACACGTTT+TGG 0.226167 1_4:+51482323 Msa0168640:CDS
CTCTCGCTTTCGTTTGTTGT+TGG 0.232029 1_4:+51481368 Msa0168640:CDS
TGGTGCTATACTAGTTCTTA+TGG 0.241827 1_4:+51482393 Msa0168640:CDS
TACTAGTTCTTATGGTCTTT+GGG 0.245956 1_4:+51482401 Msa0168640:CDS
TACGAAAACACGTTCTTATC+TGG 0.259036 1_4:+51482777 Msa0168640:three_prime_UTR
TATGGTCTTTGGGATGATTC+AGG 0.268186 1_4:+51482411 Msa0168640:CDS
TTCCTTGGCCCCTTCTTGTT+TGG 0.270915 1_4:+51482373 Msa0168640:CDS
GAGGGAAAATGCGAGAAAAT+TGG 0.304601 1_4:-51480882 None:intergenic
ATGAAGGACCATCGGAGTTC+GGG 0.308915 1_4:-51481028 None:intergenic
GTATACAGAGAAAGTAATTC+TGG 0.310445 1_4:+51482267 Msa0168640:intron
GTTGATGCTTTCTATTGAAT+TGG 0.316630 1_4:+51483019 Msa0168640:three_prime_UTR
GTTGATGATGTCCAAATATA+AGG 0.321463 1_4:-51482654 None:intergenic
ATTCCTATGATGAATTCATT+TGG 0.330140 1_4:+51482621 Msa0168640:CDS
ATTGCCCCTGCTTCTCGTAC+TGG 0.349232 1_4:+51482823 Msa0168640:three_prime_UTR
TTAATACACATTACTGTAGT+TGG 0.367432 1_4:+51482868 Msa0168640:three_prime_UTR
TTCCTATGATGAATTCATTT+GGG 0.372763 1_4:+51482622 Msa0168640:CDS
TACGAGAAGCAGGGGCAATC+AGG 0.374103 1_4:-51482819 None:intergenic
AAGTTATCTACAATGATCTA+TGG 0.395967 1_4:+51482533 Msa0168640:CDS
CTGGATTATCACTATTGTTA+AGG 0.404952 1_4:+51482842 Msa0168640:three_prime_UTR
GATGAAGGACCATCGGAGTT+CGG 0.413168 1_4:-51481029 None:intergenic
GGCTATGATTTCAACTTCCT+TGG 0.415448 1_4:+51482358 Msa0168640:CDS
TCAAAGCTATTATGATTGCT+AGG 0.431109 1_4:+51482996 Msa0168640:three_prime_UTR
GGTAGCGAAGAAAGTGGAAA+TGG 0.434726 1_4:-51481128 None:intergenic
GTTGAAGTCCTTGTACTCAT+TGG 0.437601 1_4:+51482717 Msa0168640:exon
TAGTGAGCAAAGACAGGAAA+AGG 0.461448 1_4:-51482676 None:intergenic
TACAATGATCTATGGTTGCT+TGG 0.466219 1_4:+51482541 Msa0168640:CDS
TCGGGGCTTTCGAGCATCAT+CGG 0.470230 1_4:-51481010 None:intergenic
TTCTTCGCTACCACCGGCGC+TGG 0.472313 1_4:+51481139 Msa0168640:CDS
GATAATCCAGTACGAGAAGC+AGG 0.473826 1_4:-51482829 None:intergenic
AACTCAAGAAGATGTGGAAT+CGG 0.480322 1_4:+51480936 Msa0168640:exon
GCAAGCAGAAGGTAATTAAT+CGG 0.485670 1_4:-51481335 None:intergenic
CGGGGCTTTCGAGCATCATC+GGG 0.487087 1_4:-51481009 None:intergenic
AGCGCAACGCACTGATGAAA+GGG 0.488809 1_4:-51481192 None:intergenic
TCTATTGAATTGGAAATCAA+AGG 0.497996 1_4:+51483029 Msa0168640:three_prime_UTR
AGCCCAAATGAATTCATCAT+AGG 0.498521 1_4:-51482624 None:intergenic
TGAAAATAGTGAGCAAAGAC+AGG 0.506317 1_4:-51482682 None:intergenic
AAGCGCAACGCACTGATGAA+AGG 0.522068 1_4:-51481193 None:intergenic
CGGGTAGAGAGGTCTTGAAC+CGG 0.523484 1_4:-51480990 None:intergenic
CAAAGCTATTATGATTGCTA+GGG 0.528371 1_4:+51482997 Msa0168640:three_prime_UTR
TAGTATAGCACCAAACAAGA+AGG 0.529396 1_4:-51482383 None:intergenic
TCCACTTTCTTCGCTACCAC+CGG 0.539244 1_4:+51481133 Msa0168640:CDS
GAGTGAAAACCGCAAGCAGA+AGG 0.540358 1_4:-51481346 None:intergenic
GATTAATTACCTTCTGCTTG+CGG 0.545443 1_4:+51481337 Msa0168640:CDS
TTCTGATAGTAGTAGTAAAG+AGG 0.547927 1_4:-51481308 None:intergenic
CACCAAACAAGAAGGGGCCA+AGG 0.548467 1_4:-51482375 None:intergenic
TCTTGAACCGGTTTCCACAT+CGG 0.552788 1_4:-51480978 None:intergenic
TCAAGTTGTCTGTATCGTAC+AGG 0.553801 1_4:-51482589 None:intergenic
TTGGCAGCAATTATATTCTG+TGG 0.570347 1_4:+51482560 Msa0168640:CDS
GTAGCGAAGAAAGTGGAAAT+GGG 0.571169 1_4:-51481127 None:intergenic
AGTACGTACCAATGAGTACA+AGG 0.576278 1_4:-51482725 None:intergenic
TGTTATATTGACTGCTGTGG+TGG 0.576783 1_4:+51482294 Msa0168640:CDS
AGTATAGCACCAAACAAGAA+GGG 0.588101 1_4:-51482382 None:intergenic
TTGAGCTGTGCTTTCACTAG+CGG 0.591331 1_4:+51481392 Msa0168640:CDS
ACCGGAAACTCAAGAAGATG+TGG 0.593472 1_4:+51480930 Msa0168640:exon
AAACACCGTTCTCTTGAATG+TGG 0.596475 1_4:+51482926 Msa0168640:three_prime_UTR
GACGGCGCCGACAGCGATGG+TGG 0.596967 1_4:-51481089 None:intergenic
ATAATCCAGTACGAGAAGCA+GGG 0.602941 1_4:-51482828 None:intergenic
ATTGTAGATAACTTGCCCAA+TGG 0.603009 1_4:-51482524 None:intergenic
AGCATCCACATTCAAGAGAA+CGG 0.605080 1_4:-51482931 None:intergenic
AAGAGCGAGACCAGCGCCGG+TGG 0.605231 1_4:-51481149 None:intergenic
TCGAAAGCCCCGAACTCCGA+TGG 0.608560 1_4:+51481020 Msa0168640:CDS
AGCTGTTATATTGACTGCTG+TGG 0.612381 1_4:+51482291 Msa0168640:CDS
TCGAGCATCATCGGGTAGAG+AGG 0.614144 1_4:-51481001 None:intergenic
GAAAGTGGAAATGGGACGAA+CGG 0.622665 1_4:-51481119 None:intergenic
GGGACGAACGGTGACGACGA+CGG 0.624706 1_4:-51481107 None:intergenic
GACGACGGCGCCGACAGCGA+TGG 0.625482 1_4:-51481092 None:intergenic
TTTCTCGACTGAGAAAGTGA+GGG 0.629414 1_4:-51480900 None:intergenic
GTAAAGAGCGAGACCAGCGC+CGG 0.640236 1_4:-51481152 None:intergenic
CTACTCGCCACCATCGCTGT+CGG 0.646355 1_4:+51481082 Msa0168640:CDS
TGGAATCGGAATCAACCCTA+CGG 0.653157 1_4:+51480950 Msa0168640:CDS
TGAAGGACCATCGGAGTTCG+GGG 0.666877 1_4:-51481027 None:intergenic
GCCGGTGGTAGCGAAGAAAG+TGG 0.667378 1_4:-51481134 None:intergenic
TAATCCAGTACGAGAAGCAG+GGG 0.668100 1_4:-51482827 None:intergenic
GTATAGCACCAAACAAGAAG+GGG 0.669417 1_4:-51482381 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCGAAATTGAAAGAAATTA+GGG - chr1_4:51481226-51481245 None:intergenic 20.0%
!! AATCGAAATTGAAAGAAATT+AGG - chr1_4:51481227-51481246 None:intergenic 20.0%
!! TGTGTATTTGGTTAAAATTT+GGG + chr1_4:51481518-51481537 Msa0168640:intron 20.0%
!! TTTGATTCTGTAATAATTTG+AGG + chr1_4:51481562-51481581 Msa0168640:intron 20.0%
!!! TATTTCTAGGTTGAAATTTA+GGG + chr1_4:51481623-51481642 Msa0168640:intron 20.0%
!!! CTAACTAGAATTTAACATTT+TGG + chr1_4:51481713-51481732 Msa0168640:intron 20.0%
!!! GATTTGAATTTTTTGTTATC+TGG + chr1_4:51482049-51482068 Msa0168640:intron 20.0%
!!! TATCTGGTAATAAATTTTTG+TGG + chr1_4:51482793-51482812 Msa0168640:three_prime_UTR 20.0%
!! ATCGAAATTGAAAGAAATTA+GGG - chr1_4:51481226-51481245 None:intergenic 20.0%
!! AATCGAAATTGAAAGAAATT+AGG - chr1_4:51481227-51481246 None:intergenic 20.0%
!! TGTGTATTTGGTTAAAATTT+GGG + chr1_4:51481518-51481537 Msa0168640:intron 20.0%
!! TTTGATTCTGTAATAATTTG+AGG + chr1_4:51481562-51481581 Msa0168640:intron 20.0%
!!! TATTTCTAGGTTGAAATTTA+GGG + chr1_4:51481623-51481642 Msa0168640:intron 20.0%
!!! CTAACTAGAATTTAACATTT+TGG + chr1_4:51481713-51481732 Msa0168640:intron 20.0%
!!! GATTTGAATTTTTTGTTATC+TGG + chr1_4:51482049-51482068 Msa0168640:intron 20.0%
!!! TATCTGGTAATAAATTTTTG+TGG + chr1_4:51482793-51482812 Msa0168640:three_prime_UTR 20.0%
!!! AGAAATGAAATTGTTTTTGC+GGG - chr1_4:51480806-51480825 None:intergenic 25.0%
!!! GAGAAATGAAATTGTTTTTG+CGG - chr1_4:51480807-51480826 None:intergenic 25.0%
!!! AAAATTGGTTTTAGGGATTT+TGG - chr1_4:51480870-51480889 None:intergenic 25.0%
!! TTTTCTGAATTGTGTGTATT+TGG + chr1_4:51481506-51481525 Msa0168640:intron 25.0%
! GTGTGTATTTGGTTAAAATT+TGG + chr1_4:51481517-51481536 Msa0168640:intron 25.0%
!!! TGTTGTTTAATTTGTCGATT+TGG + chr1_4:51481588-51481607 Msa0168640:intron 25.0%
!!! CTATTTCTAGGTTGAAATTT+AGG + chr1_4:51481622-51481641 Msa0168640:intron 25.0%
! TTATTTGTCATTGCAATTAG+AGG + chr1_4:51481648-51481667 Msa0168640:intron 25.0%
! ACAAAGAGAGATATTCATTT+AGG + chr1_4:51481677-51481696 Msa0168640:intron 25.0%
! ACCAAATGTGTTAATTGATT+AGG + chr1_4:51481924-51481943 Msa0168640:intron 25.0%
! ACCTAATCAATTAACACATT+TGG - chr1_4:51481928-51481947 None:intergenic 25.0%
! AAATGTGTTAATTGATTAGG+TGG + chr1_4:51481927-51481946 Msa0168640:intron 25.0%
! AATGTGTTAATTGATTAGGT+GGG + chr1_4:51481928-51481947 Msa0168640:intron 25.0%
!! TTTGTTATAAATCTTCTCTG+TGG + chr1_4:51481970-51481989 Msa0168640:intron 25.0%
!!! TTTTATTTCAATCGCACAAT+CGG - chr1_4:51482092-51482111 None:intergenic 25.0%
!! CAAATATGTAATTTGCAGTT+AGG + chr1_4:51482126-51482145 Msa0168640:intron 25.0%
!!! TTTTGCTGATTTTTTCCTAA+TGG + chr1_4:51482232-51482251 Msa0168640:intron 25.0%
!!! TTTGCTGATTTTTTCCTAAT+GGG + chr1_4:51482233-51482252 Msa0168640:intron 25.0%
! TATTTCACTGTTTAATGTTC+TGG + chr1_4:51482461-51482480 Msa0168640:intron 25.0%
! AAGTTATCTACAATGATCTA+TGG + chr1_4:51482533-51482552 Msa0168640:CDS 25.0%
! ATTCCTATGATGAATTCATT+TGG + chr1_4:51482621-51482640 Msa0168640:CDS 25.0%
! TTCCTATGATGAATTCATTT+GGG + chr1_4:51482622-51482641 Msa0168640:CDS 25.0%
! TTAATACACATTACTGTAGT+TGG + chr1_4:51482868-51482887 Msa0168640:three_prime_UTR 25.0%
! TCTATTGAATTGGAAATCAA+AGG + chr1_4:51483029-51483048 Msa0168640:three_prime_UTR 25.0%
!!! AGAAATGAAATTGTTTTTGC+GGG - chr1_4:51480806-51480825 None:intergenic 25.0%
!!! GAGAAATGAAATTGTTTTTG+CGG - chr1_4:51480807-51480826 None:intergenic 25.0%
!!! AAAATTGGTTTTAGGGATTT+TGG - chr1_4:51480870-51480889 None:intergenic 25.0%
!! TTTTCTGAATTGTGTGTATT+TGG + chr1_4:51481506-51481525 Msa0168640:intron 25.0%
! GTGTGTATTTGGTTAAAATT+TGG + chr1_4:51481517-51481536 Msa0168640:intron 25.0%
!!! TGTTGTTTAATTTGTCGATT+TGG + chr1_4:51481588-51481607 Msa0168640:intron 25.0%
!!! CTATTTCTAGGTTGAAATTT+AGG + chr1_4:51481622-51481641 Msa0168640:intron 25.0%
! TTATTTGTCATTGCAATTAG+AGG + chr1_4:51481648-51481667 Msa0168640:intron 25.0%
! ACAAAGAGAGATATTCATTT+AGG + chr1_4:51481677-51481696 Msa0168640:intron 25.0%
! ACCAAATGTGTTAATTGATT+AGG + chr1_4:51481924-51481943 Msa0168640:intron 25.0%
! ACCTAATCAATTAACACATT+TGG - chr1_4:51481928-51481947 None:intergenic 25.0%
! AAATGTGTTAATTGATTAGG+TGG + chr1_4:51481927-51481946 Msa0168640:intron 25.0%
! AATGTGTTAATTGATTAGGT+GGG + chr1_4:51481928-51481947 Msa0168640:intron 25.0%
!! TTTGTTATAAATCTTCTCTG+TGG + chr1_4:51481970-51481989 Msa0168640:intron 25.0%
!!! TTTTATTTCAATCGCACAAT+CGG - chr1_4:51482092-51482111 None:intergenic 25.0%
!! CAAATATGTAATTTGCAGTT+AGG + chr1_4:51482126-51482145 Msa0168640:intron 25.0%
!!! TTTTGCTGATTTTTTCCTAA+TGG + chr1_4:51482232-51482251 Msa0168640:intron 25.0%
!!! TTTGCTGATTTTTTCCTAAT+GGG + chr1_4:51482233-51482252 Msa0168640:intron 25.0%
! TATTTCACTGTTTAATGTTC+TGG + chr1_4:51482461-51482480 Msa0168640:intron 25.0%
! AAGTTATCTACAATGATCTA+TGG + chr1_4:51482533-51482552 Msa0168640:CDS 25.0%
! ATTCCTATGATGAATTCATT+TGG + chr1_4:51482621-51482640 Msa0168640:CDS 25.0%
! TTCCTATGATGAATTCATTT+GGG + chr1_4:51482622-51482641 Msa0168640:CDS 25.0%
! TTAATACACATTACTGTAGT+TGG + chr1_4:51482868-51482887 Msa0168640:three_prime_UTR 25.0%
! TCTATTGAATTGGAAATCAA+AGG + chr1_4:51483029-51483048 Msa0168640:three_prime_UTR 25.0%
!!! ATGCGAGAAAATTGGTTTTA+GGG - chr1_4:51480877-51480896 None:intergenic 30.0%
!!! AATGCGAGAAAATTGGTTTT+AGG - chr1_4:51480878-51480897 None:intergenic 30.0%
TTCTGATAGTAGTAGTAAAG+AGG - chr1_4:51481311-51481330 None:intergenic 30.0%
AGAAAGAAAGAAAGCAGAAA+TGG - chr1_4:51481434-51481453 None:intergenic 30.0%
! GGTTAAAATTTGGGATTGAT+TGG + chr1_4:51481527-51481546 Msa0168640:intron 30.0%
! GAACTTGAGTTTCTATTTCT+AGG + chr1_4:51481610-51481629 Msa0168640:intron 30.0%
AGAGATATTCATTTAGGAAC+TGG + chr1_4:51481683-51481702 Msa0168640:intron 30.0%
ACATGTTGAATTGAAGAAGT+CGG + chr1_4:51481874-51481893 Msa0168640:intron 30.0%
AAAGGAAAGAACTAACCAAT+AGG - chr1_4:51482011-51482030 None:intergenic 30.0%
TTCTTTCCTTTCATTGAGAA+TGG + chr1_4:51482020-51482039 Msa0168640:intron 30.0%
!! AGAATTGCCTACTTTTATCT+GGG + chr1_4:51482208-51482227 Msa0168640:intron 30.0%
!!! TGATTTTTTCCTAATGGGAA+TGG + chr1_4:51482238-51482257 Msa0168640:intron 30.0%
!!! GATTTTTTCCTAATGGGAAT+GGG + chr1_4:51482239-51482258 Msa0168640:intron 30.0%
!!! ATTTTTTCCTAATGGGAATG+GGG + chr1_4:51482240-51482259 Msa0168640:intron 30.0%
GTATACAGAGAAAGTAATTC+TGG + chr1_4:51482267-51482286 Msa0168640:intron 30.0%
! ATACTAGTTCTTATGGTCTT+TGG + chr1_4:51482400-51482419 Msa0168640:CDS 30.0%
! TACTAGTTCTTATGGTCTTT+GGG + chr1_4:51482401-51482420 Msa0168640:CDS 30.0%
! TTGCAGATTTTCTTTCCATT+GGG + chr1_4:51482509-51482528 Msa0168640:intron 30.0%
!! GTTGATGATGTCCAAATATA+AGG - chr1_4:51482657-51482676 None:intergenic 30.0%
!! TACTAGTTGTTTTCTGATGT+GGG + chr1_4:51482744-51482763 Msa0168640:three_prime_UTR 30.0%
CTGGATTATCACTATTGTTA+AGG + chr1_4:51482842-51482861 Msa0168640:three_prime_UTR 30.0%
!!! TAGCTTTGATTTTGAACACT+CGG - chr1_4:51482985-51483004 None:intergenic 30.0%
TCAAAGCTATTATGATTGCT+AGG + chr1_4:51482996-51483015 Msa0168640:three_prime_UTR 30.0%
CAAAGCTATTATGATTGCTA+GGG + chr1_4:51482997-51483016 Msa0168640:three_prime_UTR 30.0%
GTTGATGCTTTCTATTGAAT+TGG + chr1_4:51483019-51483038 Msa0168640:three_prime_UTR 30.0%
!!! GAAATGAAATTGTTTTTGCG+GGG - chr1_4:51480805-51480824 None:intergenic 30.0%
!!! ATGCGAGAAAATTGGTTTTA+GGG - chr1_4:51480877-51480896 None:intergenic 30.0%
!!! AATGCGAGAAAATTGGTTTT+AGG - chr1_4:51480878-51480897 None:intergenic 30.0%
TTCTGATAGTAGTAGTAAAG+AGG - chr1_4:51481311-51481330 None:intergenic 30.0%
AGAAAGAAAGAAAGCAGAAA+TGG - chr1_4:51481434-51481453 None:intergenic 30.0%
! GGTTAAAATTTGGGATTGAT+TGG + chr1_4:51481527-51481546 Msa0168640:intron 30.0%
! GAACTTGAGTTTCTATTTCT+AGG + chr1_4:51481610-51481629 Msa0168640:intron 30.0%
AGAGATATTCATTTAGGAAC+TGG + chr1_4:51481683-51481702 Msa0168640:intron 30.0%
ACATGTTGAATTGAAGAAGT+CGG + chr1_4:51481874-51481893 Msa0168640:intron 30.0%
AAAGGAAAGAACTAACCAAT+AGG - chr1_4:51482011-51482030 None:intergenic 30.0%
TTCTTTCCTTTCATTGAGAA+TGG + chr1_4:51482020-51482039 Msa0168640:intron 30.0%
!! AGAATTGCCTACTTTTATCT+GGG + chr1_4:51482208-51482227 Msa0168640:intron 30.0%
!!! TGATTTTTTCCTAATGGGAA+TGG + chr1_4:51482238-51482257 Msa0168640:intron 30.0%
!!! GATTTTTTCCTAATGGGAAT+GGG + chr1_4:51482239-51482258 Msa0168640:intron 30.0%
!!! ATTTTTTCCTAATGGGAATG+GGG + chr1_4:51482240-51482259 Msa0168640:intron 30.0%
GTATACAGAGAAAGTAATTC+TGG + chr1_4:51482267-51482286 Msa0168640:intron 30.0%
! ATACTAGTTCTTATGGTCTT+TGG + chr1_4:51482400-51482419 Msa0168640:CDS 30.0%
! TACTAGTTCTTATGGTCTTT+GGG + chr1_4:51482401-51482420 Msa0168640:CDS 30.0%
! TTGCAGATTTTCTTTCCATT+GGG + chr1_4:51482509-51482528 Msa0168640:intron 30.0%
!! GTTGATGATGTCCAAATATA+AGG - chr1_4:51482657-51482676 None:intergenic 30.0%
!! TACTAGTTGTTTTCTGATGT+GGG + chr1_4:51482744-51482763 Msa0168640:three_prime_UTR 30.0%
CTGGATTATCACTATTGTTA+AGG + chr1_4:51482842-51482861 Msa0168640:three_prime_UTR 30.0%
!!! TAGCTTTGATTTTGAACACT+CGG - chr1_4:51482985-51483004 None:intergenic 30.0%
TCAAAGCTATTATGATTGCT+AGG + chr1_4:51482996-51483015 Msa0168640:three_prime_UTR 30.0%
CAAAGCTATTATGATTGCTA+GGG + chr1_4:51482997-51483016 Msa0168640:three_prime_UTR 30.0%
GTTGATGCTTTCTATTGAAT+TGG + chr1_4:51483019-51483038 Msa0168640:three_prime_UTR 30.0%
AACTCAAGAAGATGTGGAAT+CGG + chr1_4:51480936-51480955 Msa0168640:exon 35.0%
! GATGTAGACTTTTCTGATGA+AGG - chr1_4:51481047-51481066 None:intergenic 35.0%
GCAAGCAGAAGGTAATTAAT+CGG - chr1_4:51481338-51481357 None:intergenic 35.0%
GATTAATTACCTTCTGCTTG+CGG + chr1_4:51481337-51481356 Msa0168640:CDS 35.0%
GACTTCTTCAATTCAACATG+TGG - chr1_4:51481875-51481894 None:intergenic 35.0%
TAAATCTTCTCTGTGGTTAG+TGG + chr1_4:51481977-51481996 Msa0168640:intron 35.0%
!! TTAGTGGAGTTTTGACCTAT+TGG + chr1_4:51481993-51482012 Msa0168640:intron 35.0%
!!! TAGGAGTTACCTTGCTATTT+TGG + chr1_4:51482145-51482164 Msa0168640:intron 35.0%
TTACACAAGCCAAAATAGCA+AGG - chr1_4:51482157-51482176 None:intergenic 35.0%
!! GAGAATTGCCTACTTTTATC+TGG + chr1_4:51482207-51482226 Msa0168640:intron 35.0%
GCAAAATCCCAGATAAAAGT+AGG - chr1_4:51482218-51482237 None:intergenic 35.0%
AGTATAGCACCAAACAAGAA+GGG - chr1_4:51482385-51482404 None:intergenic 35.0%
TAGTATAGCACCAAACAAGA+AGG - chr1_4:51482386-51482405 None:intergenic 35.0%
!! TGGTGCTATACTAGTTCTTA+TGG + chr1_4:51482393-51482412 Msa0168640:CDS 35.0%
! CTTGCAGATTTTCTTTCCAT+TGG + chr1_4:51482508-51482527 Msa0168640:intron 35.0%
! ATTGTAGATAACTTGCCCAA+TGG - chr1_4:51482527-51482546 None:intergenic 35.0%
TACAATGATCTATGGTTGCT+TGG + chr1_4:51482541-51482560 Msa0168640:CDS 35.0%
TTGGCAGCAATTATATTCTG+TGG + chr1_4:51482560-51482579 Msa0168640:CDS 35.0%
AGCCCAAATGAATTCATCAT+AGG - chr1_4:51482627-51482646 None:intergenic 35.0%
TGAAAATAGTGAGCAAAGAC+AGG - chr1_4:51482685-51482704 None:intergenic 35.0%
!! GTACTAGTTGTTTTCTGATG+TGG + chr1_4:51482743-51482762 Msa0168640:three_prime_UTR 35.0%
!! ACTAGTTGTTTTCTGATGTG+GGG + chr1_4:51482745-51482764 Msa0168640:three_prime_UTR 35.0%
TACGAAAACACGTTCTTATC+TGG + chr1_4:51482777-51482796 Msa0168640:three_prime_UTR 35.0%
!! AGCTTTGATTTTGAACACTC+GGG - chr1_4:51482984-51483003 None:intergenic 35.0%
AACTCAAGAAGATGTGGAAT+CGG + chr1_4:51480936-51480955 Msa0168640:exon 35.0%
! GATGTAGACTTTTCTGATGA+AGG - chr1_4:51481047-51481066 None:intergenic 35.0%
GCAAGCAGAAGGTAATTAAT+CGG - chr1_4:51481338-51481357 None:intergenic 35.0%
GATTAATTACCTTCTGCTTG+CGG + chr1_4:51481337-51481356 Msa0168640:CDS 35.0%
GACTTCTTCAATTCAACATG+TGG - chr1_4:51481875-51481894 None:intergenic 35.0%
TAAATCTTCTCTGTGGTTAG+TGG + chr1_4:51481977-51481996 Msa0168640:intron 35.0%
!! TTAGTGGAGTTTTGACCTAT+TGG + chr1_4:51481993-51482012 Msa0168640:intron 35.0%
!!! TAGGAGTTACCTTGCTATTT+TGG + chr1_4:51482145-51482164 Msa0168640:intron 35.0%
TTACACAAGCCAAAATAGCA+AGG - chr1_4:51482157-51482176 None:intergenic 35.0%
!! GAGAATTGCCTACTTTTATC+TGG + chr1_4:51482207-51482226 Msa0168640:intron 35.0%
GCAAAATCCCAGATAAAAGT+AGG - chr1_4:51482218-51482237 None:intergenic 35.0%
AGTATAGCACCAAACAAGAA+GGG - chr1_4:51482385-51482404 None:intergenic 35.0%
TAGTATAGCACCAAACAAGA+AGG - chr1_4:51482386-51482405 None:intergenic 35.0%
!! TGGTGCTATACTAGTTCTTA+TGG + chr1_4:51482393-51482412 Msa0168640:CDS 35.0%
! CTTGCAGATTTTCTTTCCAT+TGG + chr1_4:51482508-51482527 Msa0168640:intron 35.0%
! ATTGTAGATAACTTGCCCAA+TGG - chr1_4:51482527-51482546 None:intergenic 35.0%
TACAATGATCTATGGTTGCT+TGG + chr1_4:51482541-51482560 Msa0168640:CDS 35.0%
TTGGCAGCAATTATATTCTG+TGG + chr1_4:51482560-51482579 Msa0168640:CDS 35.0%
AGCCCAAATGAATTCATCAT+AGG - chr1_4:51482627-51482646 None:intergenic 35.0%
TGAAAATAGTGAGCAAAGAC+AGG - chr1_4:51482685-51482704 None:intergenic 35.0%
!! GTACTAGTTGTTTTCTGATG+TGG + chr1_4:51482743-51482762 Msa0168640:three_prime_UTR 35.0%
!! ACTAGTTGTTTTCTGATGTG+GGG + chr1_4:51482745-51482764 Msa0168640:three_prime_UTR 35.0%
TACGAAAACACGTTCTTATC+TGG + chr1_4:51482777-51482796 Msa0168640:three_prime_UTR 35.0%
!! AGCTTTGATTTTGAACACTC+GGG - chr1_4:51482984-51483003 None:intergenic 35.0%
GAGGGAAAATGCGAGAAAAT+TGG - chr1_4:51480885-51480904 None:intergenic 40.0%
TTTCTCGACTGAGAAAGTGA+GGG - chr1_4:51480903-51480922 None:intergenic 40.0%
! TTTTCTCGACTGAGAAAGTG+AGG - chr1_4:51480904-51480923 None:intergenic 40.0%
TCCACATCTTCTTGAGTTTC+CGG - chr1_4:51480934-51480953 None:intergenic 40.0%
! CTTTTCTGATGAAGGACCAT+CGG - chr1_4:51481039-51481058 None:intergenic 40.0%
GTAGCGAAGAAAGTGGAAAT+GGG - chr1_4:51481130-51481149 None:intergenic 40.0%
TAATCACATGTGCTATGTGC+TGG + chr1_4:51481844-51481863 Msa0168640:intron 40.0%
TCAGCACCATTCTCAATGAA+AGG - chr1_4:51482029-51482048 None:intergenic 40.0%
TACAAAACCCCATTCCCATT+AGG - chr1_4:51482250-51482269 None:intergenic 40.0%
! AGCTGTTATATTGACTGCTG+TGG + chr1_4:51482291-51482310 Msa0168640:CDS 40.0%
! TGTTATATTGACTGCTGTGG+TGG + chr1_4:51482294-51482313 Msa0168640:CDS 40.0%
! TCTGACTCTCTACACGTTTT+GGG + chr1_4:51482324-51482343 Msa0168640:CDS 40.0%
GGCTATGATTTCAACTTCCT+TGG + chr1_4:51482358-51482377 Msa0168640:CDS 40.0%
GTATAGCACCAAACAAGAAG+GGG - chr1_4:51482384-51482403 None:intergenic 40.0%
!! TATGGTCTTTGGGATGATTC+AGG + chr1_4:51482411-51482430 Msa0168640:CDS 40.0%
! TCAAGTTGTCTGTATCGTAC+AGG - chr1_4:51482592-51482611 None:intergenic 40.0%
GGCTTCTGTCTCCTTATATT+TGG + chr1_4:51482643-51482662 Msa0168640:CDS 40.0%
TAGTGAGCAAAGACAGGAAA+AGG - chr1_4:51482679-51482698 None:intergenic 40.0%
GTTGAAGTCCTTGTACTCAT+TGG + chr1_4:51482717-51482736 Msa0168640:exon 40.0%
AGTACGTACCAATGAGTACA+AGG - chr1_4:51482728-51482747 None:intergenic 40.0%
ATAATCCAGTACGAGAAGCA+GGG - chr1_4:51482831-51482850 None:intergenic 40.0%
AAACACCGTTCTCTTGAATG+TGG + chr1_4:51482926-51482945 Msa0168640:three_prime_UTR 40.0%
AGCATCCACATTCAAGAGAA+CGG - chr1_4:51482934-51482953 None:intergenic 40.0%
!! GCTTTGATTTTGAACACTCG+GGG - chr1_4:51482983-51483002 None:intergenic 40.0%
GAGGGAAAATGCGAGAAAAT+TGG - chr1_4:51480885-51480904 None:intergenic 40.0%
TTTCTCGACTGAGAAAGTGA+GGG - chr1_4:51480903-51480922 None:intergenic 40.0%
! TTTTCTCGACTGAGAAAGTG+AGG - chr1_4:51480904-51480923 None:intergenic 40.0%
TCCACATCTTCTTGAGTTTC+CGG - chr1_4:51480934-51480953 None:intergenic 40.0%
! CTTTTCTGATGAAGGACCAT+CGG - chr1_4:51481039-51481058 None:intergenic 40.0%
GTAGCGAAGAAAGTGGAAAT+GGG - chr1_4:51481130-51481149 None:intergenic 40.0%
TAATCACATGTGCTATGTGC+TGG + chr1_4:51481844-51481863 Msa0168640:intron 40.0%
TCAGCACCATTCTCAATGAA+AGG - chr1_4:51482029-51482048 None:intergenic 40.0%
TACAAAACCCCATTCCCATT+AGG - chr1_4:51482250-51482269 None:intergenic 40.0%
! AGCTGTTATATTGACTGCTG+TGG + chr1_4:51482291-51482310 Msa0168640:CDS 40.0%
! TGTTATATTGACTGCTGTGG+TGG + chr1_4:51482294-51482313 Msa0168640:CDS 40.0%
! TCTGACTCTCTACACGTTTT+GGG + chr1_4:51482324-51482343 Msa0168640:CDS 40.0%
GGCTATGATTTCAACTTCCT+TGG + chr1_4:51482358-51482377 Msa0168640:CDS 40.0%
GTATAGCACCAAACAAGAAG+GGG - chr1_4:51482384-51482403 None:intergenic 40.0%
!! TATGGTCTTTGGGATGATTC+AGG + chr1_4:51482411-51482430 Msa0168640:CDS 40.0%
! TCAAGTTGTCTGTATCGTAC+AGG - chr1_4:51482592-51482611 None:intergenic 40.0%
GGCTTCTGTCTCCTTATATT+TGG + chr1_4:51482643-51482662 Msa0168640:CDS 40.0%
TAGTGAGCAAAGACAGGAAA+AGG - chr1_4:51482679-51482698 None:intergenic 40.0%
GTTGAAGTCCTTGTACTCAT+TGG + chr1_4:51482717-51482736 Msa0168640:exon 40.0%
AGTACGTACCAATGAGTACA+AGG - chr1_4:51482728-51482747 None:intergenic 40.0%
ATAATCCAGTACGAGAAGCA+GGG - chr1_4:51482831-51482850 None:intergenic 40.0%
AAACACCGTTCTCTTGAATG+TGG + chr1_4:51482926-51482945 Msa0168640:three_prime_UTR 40.0%
AGCATCCACATTCAAGAGAA+CGG - chr1_4:51482934-51482953 None:intergenic 40.0%
!! GCTTTGATTTTGAACACTCG+GGG - chr1_4:51482983-51483002 None:intergenic 40.0%
!! CTTTTGTTTGCTTGCGTGAG+AGG - chr1_4:51480842-51480861 None:intergenic 45.0%
CAGTCGAGAAAAAGCTTCAC+CGG + chr1_4:51480912-51480931 Msa0168640:five_prime_UTR 45.0%
ACCGGAAACTCAAGAAGATG+TGG + chr1_4:51480930-51480949 Msa0168640:exon 45.0%
TGGAATCGGAATCAACCCTA+CGG + chr1_4:51480950-51480969 Msa0168640:CDS 45.0%
!!! TCCACATCGGTTTTTCCGTA+GGG - chr1_4:51480968-51480987 None:intergenic 45.0%
!!! TTCCACATCGGTTTTTCCGT+AGG - chr1_4:51480969-51480988 None:intergenic 45.0%
GGAAAAACCGATGTGGAAAC+CGG + chr1_4:51480971-51480990 Msa0168640:CDS 45.0%
! TCTTGAACCGGTTTCCACAT+CGG - chr1_4:51480981-51481000 None:intergenic 45.0%
GAAAGTGGAAATGGGACGAA+CGG - chr1_4:51481122-51481141 None:intergenic 45.0%
GGTAGCGAAGAAAGTGGAAA+TGG - chr1_4:51481131-51481150 None:intergenic 45.0%
!! CTCTCGCTTTCGTTTGTTGT+TGG + chr1_4:51481368-51481387 Msa0168640:CDS 45.0%
TTGAGCTGTGCTTTCACTAG+CGG + chr1_4:51481392-51481411 Msa0168640:CDS 45.0%
AGGTGGGTGATGTTAAGACA+AGG + chr1_4:51481944-51481963 Msa0168640:intron 45.0%
! CTCTGACTCTCTACACGTTT+TGG + chr1_4:51482323-51482342 Msa0168640:CDS 45.0%
! GTTTTCTGATGTGGGGTTAG+TGG + chr1_4:51482752-51482771 Msa0168640:three_prime_UTR 45.0%
TAATCCAGTACGAGAAGCAG+GGG - chr1_4:51482830-51482849 None:intergenic 45.0%
GATAATCCAGTACGAGAAGC+AGG - chr1_4:51482832-51482851 None:intergenic 45.0%
! TTGATTTTGAACACTCGGGG+AGG - chr1_4:51482980-51482999 None:intergenic 45.0%
!! CTTTTGTTTGCTTGCGTGAG+AGG - chr1_4:51480842-51480861 None:intergenic 45.0%
CAGTCGAGAAAAAGCTTCAC+CGG + chr1_4:51480912-51480931 Msa0168640:five_prime_UTR 45.0%
ACCGGAAACTCAAGAAGATG+TGG + chr1_4:51480930-51480949 Msa0168640:exon 45.0%
TGGAATCGGAATCAACCCTA+CGG + chr1_4:51480950-51480969 Msa0168640:CDS 45.0%
!!! TCCACATCGGTTTTTCCGTA+GGG - chr1_4:51480968-51480987 None:intergenic 45.0%
!!! TTCCACATCGGTTTTTCCGT+AGG - chr1_4:51480969-51480988 None:intergenic 45.0%
GGAAAAACCGATGTGGAAAC+CGG + chr1_4:51480971-51480990 Msa0168640:CDS 45.0%
! TCTTGAACCGGTTTCCACAT+CGG - chr1_4:51480981-51481000 None:intergenic 45.0%
GAAAGTGGAAATGGGACGAA+CGG - chr1_4:51481122-51481141 None:intergenic 45.0%
GGTAGCGAAGAAAGTGGAAA+TGG - chr1_4:51481131-51481150 None:intergenic 45.0%
!! CTCTCGCTTTCGTTTGTTGT+TGG + chr1_4:51481368-51481387 Msa0168640:CDS 45.0%
TTGAGCTGTGCTTTCACTAG+CGG + chr1_4:51481392-51481411 Msa0168640:CDS 45.0%
AGGTGGGTGATGTTAAGACA+AGG + chr1_4:51481944-51481963 Msa0168640:intron 45.0%
! CTCTGACTCTCTACACGTTT+TGG + chr1_4:51482323-51482342 Msa0168640:CDS 45.0%
! GTTTTCTGATGTGGGGTTAG+TGG + chr1_4:51482752-51482771 Msa0168640:three_prime_UTR 45.0%
TAATCCAGTACGAGAAGCAG+GGG - chr1_4:51482830-51482849 None:intergenic 45.0%
GATAATCCAGTACGAGAAGC+AGG - chr1_4:51482832-51482851 None:intergenic 45.0%
! TTGATTTTGAACACTCGGGG+AGG - chr1_4:51482980-51482999 None:intergenic 45.0%
!!! ATATTTTAAAAAAATAGAAA+TGG - chr1_4:51483081-51483100 None:intergenic 5.0%
!!! ATTTCTATTTTTTTAAAATA+TGG + chr1_4:51483080-51483099 Msa0168640:three_prime_UTR 5.0%
!!! TTTCTATTTTTTTAAAATAT+GGG + chr1_4:51483081-51483100 Msa0168640:three_prime_UTR 5.0%
!!! ATATTTTAAAAAAATAGAAA+TGG - chr1_4:51483081-51483100 None:intergenic 5.0%
!!! ATTTCTATTTTTTTAAAATA+TGG + chr1_4:51483080-51483099 Msa0168640:three_prime_UTR 5.0%
!!! TTTCTATTTTTTTAAAATAT+GGG + chr1_4:51483081-51483100 Msa0168640:three_prime_UTR 5.0%
ACCCTACGGAAAAACCGATG+TGG + chr1_4:51480964-51480983 Msa0168640:CDS 50.0%
ATGAAGGACCATCGGAGTTC+GGG - chr1_4:51481031-51481050 None:intergenic 50.0%
GATGAAGGACCATCGGAGTT+CGG - chr1_4:51481032-51481051 None:intergenic 50.0%
TCCACTTTCTTCGCTACCAC+CGG + chr1_4:51481133-51481152 Msa0168640:CDS 50.0%
! AGCGCAACGCACTGATGAAA+GGG - chr1_4:51481195-51481214 None:intergenic 50.0%
! AAGCGCAACGCACTGATGAA+AGG - chr1_4:51481196-51481215 None:intergenic 50.0%
GAGTGAAAACCGCAAGCAGA+AGG - chr1_4:51481349-51481368 None:intergenic 50.0%
! AGTTGTGCTGCTATGCAGCA+CGG + chr1_4:51481747-51481766 Msa0168640:intron 50.0%
! GTGGCATTGAGACTGACACA+TGG + chr1_4:51481778-51481797 Msa0168640:intron 50.0%
!! ACGTTTTGGGCTGCAAGTAG+AGG + chr1_4:51482337-51482356 Msa0168640:CDS 50.0%
TTCCTTGGCCCCTTCTTGTT+TGG + chr1_4:51482373-51482392 Msa0168640:CDS 50.0%
ACCCTACGGAAAAACCGATG+TGG + chr1_4:51480964-51480983 Msa0168640:CDS 50.0%
ATGAAGGACCATCGGAGTTC+GGG - chr1_4:51481031-51481050 None:intergenic 50.0%
GATGAAGGACCATCGGAGTT+CGG - chr1_4:51481032-51481051 None:intergenic 50.0%
TCCACTTTCTTCGCTACCAC+CGG + chr1_4:51481133-51481152 Msa0168640:CDS 50.0%
! AGCGCAACGCACTGATGAAA+GGG - chr1_4:51481195-51481214 None:intergenic 50.0%
! AAGCGCAACGCACTGATGAA+AGG - chr1_4:51481196-51481215 None:intergenic 50.0%
GAGTGAAAACCGCAAGCAGA+AGG - chr1_4:51481349-51481368 None:intergenic 50.0%
! AGTTGTGCTGCTATGCAGCA+CGG + chr1_4:51481747-51481766 Msa0168640:intron 50.0%
! GTGGCATTGAGACTGACACA+TGG + chr1_4:51481778-51481797 Msa0168640:intron 50.0%
!! ACGTTTTGGGCTGCAAGTAG+AGG + chr1_4:51482337-51482356 Msa0168640:CDS 50.0%
TTCCTTGGCCCCTTCTTGTT+TGG + chr1_4:51482373-51482392 Msa0168640:CDS 50.0%
CGGGTAGAGAGGTCTTGAAC+CGG - chr1_4:51480993-51481012 None:intergenic 55.0%
TCGAGCATCATCGGGTAGAG+AGG - chr1_4:51481004-51481023 None:intergenic 55.0%
TCGGGGCTTTCGAGCATCAT+CGG - chr1_4:51481013-51481032 None:intergenic 55.0%
TGAAGGACCATCGGAGTTCG+GGG - chr1_4:51481030-51481049 None:intergenic 55.0%
GCTGCTATGCAGCACGGATA+CGG + chr1_4:51481753-51481772 Msa0168640:intron 55.0%
ATGCAGCACGGATACGGTAG+TGG + chr1_4:51481759-51481778 Msa0168640:intron 55.0%
CACCAAACAAGAAGGGGCCA+AGG - chr1_4:51482378-51482397 None:intergenic 55.0%
TACGAGAAGCAGGGGCAATC+AGG - chr1_4:51482822-51482841 None:intergenic 55.0%
ATTGCCCCTGCTTCTCGTAC+TGG + chr1_4:51482823-51482842 Msa0168640:three_prime_UTR 55.0%
CGGGTAGAGAGGTCTTGAAC+CGG - chr1_4:51480993-51481012 None:intergenic 55.0%
TCGAGCATCATCGGGTAGAG+AGG - chr1_4:51481004-51481023 None:intergenic 55.0%
TCGGGGCTTTCGAGCATCAT+CGG - chr1_4:51481013-51481032 None:intergenic 55.0%
TGAAGGACCATCGGAGTTCG+GGG - chr1_4:51481030-51481049 None:intergenic 55.0%
GCTGCTATGCAGCACGGATA+CGG + chr1_4:51481753-51481772 Msa0168640:intron 55.0%
ATGCAGCACGGATACGGTAG+TGG + chr1_4:51481759-51481778 Msa0168640:intron 55.0%
CACCAAACAAGAAGGGGCCA+AGG - chr1_4:51482378-51482397 None:intergenic 55.0%
TACGAGAAGCAGGGGCAATC+AGG - chr1_4:51482822-51482841 None:intergenic 55.0%
ATTGCCCCTGCTTCTCGTAC+TGG + chr1_4:51482823-51482842 Msa0168640:three_prime_UTR 55.0%
CGGGGCTTTCGAGCATCATC+GGG - chr1_4:51481012-51481031 None:intergenic 60.0%
TCGAAAGCCCCGAACTCCGA+TGG + chr1_4:51481020-51481039 Msa0168640:CDS 60.0%
CTACTCGCCACCATCGCTGT+CGG + chr1_4:51481082-51481101 Msa0168640:CDS 60.0%
! GCCGGTGGTAGCGAAGAAAG+TGG - chr1_4:51481137-51481156 None:intergenic 60.0%
GTAAAGAGCGAGACCAGCGC+CGG - chr1_4:51481155-51481174 None:intergenic 60.0%
CGGGGCTTTCGAGCATCATC+GGG - chr1_4:51481012-51481031 None:intergenic 60.0%
TCGAAAGCCCCGAACTCCGA+TGG + chr1_4:51481020-51481039 Msa0168640:CDS 60.0%
CTACTCGCCACCATCGCTGT+CGG + chr1_4:51481082-51481101 Msa0168640:CDS 60.0%
! GCCGGTGGTAGCGAAGAAAG+TGG - chr1_4:51481137-51481156 None:intergenic 60.0%
GTAAAGAGCGAGACCAGCGC+CGG - chr1_4:51481155-51481174 None:intergenic 60.0%
GGGACGAACGGTGACGACGA+CGG - chr1_4:51481110-51481129 None:intergenic 65.0%
TTCTTCGCTACCACCGGCGC+TGG + chr1_4:51481139-51481158 Msa0168640:CDS 65.0%
GGGACGAACGGTGACGACGA+CGG - chr1_4:51481110-51481129 None:intergenic 65.0%
TTCTTCGCTACCACCGGCGC+TGG + chr1_4:51481139-51481158 Msa0168640:CDS 65.0%
! AAGAGCGAGACCAGCGCCGG+TGG - chr1_4:51481152-51481171 None:intergenic 70.0%
! AAGAGCGAGACCAGCGCCGG+TGG - chr1_4:51481152-51481171 None:intergenic 70.0%
!! GACGGCGCCGACAGCGATGG+TGG - chr1_4:51481092-51481111 None:intergenic 75.0%
!! GACGACGGCGCCGACAGCGA+TGG - chr1_4:51481095-51481114 None:intergenic 75.0%
!! GACGGCGCCGACAGCGATGG+TGG - chr1_4:51481092-51481111 None:intergenic 75.0%
!! GACGACGGCGCCGACAGCGA+TGG - chr1_4:51481095-51481114 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 51480803 51483113 51480803 ID=Msa0168640;Name=Msa0168640
chr1_4 mRNA 51480803 51483113 51480803 ID=Msa0168640-mRNA-1;Parent=Msa0168640;Name=Msa0168640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=144|1|1|1|1|1|4|392|244
chr1_4 exon 51480803 51481202 51480803 ID=Msa0168640-mRNA-1:exon:15112;Parent=Msa0168640-mRNA-1
chr1_4 exon 51481300 51481413 51481300 ID=Msa0168640-mRNA-1:exon:15113;Parent=Msa0168640-mRNA-1
chr1_4 exon 51482275 51482432 51482275 ID=Msa0168640-mRNA-1:exon:15114;Parent=Msa0168640-mRNA-1
chr1_4 exon 51482515 51483113 51482515 ID=Msa0168640-mRNA-1:exon:15115;Parent=Msa0168640-mRNA-1
chr1_4 five_prime_UTR 51480803 51480946 51480803 ID=Msa0168640-mRNA-1:five_prime_utr;Parent=Msa0168640-mRNA-1
chr1_4 CDS 51480947 51481202 51480947 ID=Msa0168640-mRNA-1:cds;Parent=Msa0168640-mRNA-1
chr1_4 CDS 51481300 51481413 51481300 ID=Msa0168640-mRNA-1:cds;Parent=Msa0168640-mRNA-1
chr1_4 CDS 51482275 51482432 51482275 ID=Msa0168640-mRNA-1:cds;Parent=Msa0168640-mRNA-1
chr1_4 CDS 51482515 51482721 51482515 ID=Msa0168640-mRNA-1:cds;Parent=Msa0168640-mRNA-1
chr1_4 three_prime_UTR 51482722 51483113 51482722 ID=Msa0168640-mRNA-1:three_prime_utr;Parent=Msa0168640-mRNA-1
Gene Sequence

>Msa0168640

ATGTGGAATCGGAATCAACCCTACGGAAAAACCGATGTGGAAACCGGTTCAAGACCTCTCTACCCGATGATGCTCGAAAGCCCCGAACTCCGATGGTCCTTCATCAGAAAAGTCTACATCATCATCGCTCTTCAACTACTCGCCACCATCGCTGTCGGCGCCGTCGTCGTCACCGTTCGTCCCATTTCCACTTTCTTCGCTACCACCGGCGCTGGTCTCGCTCTTTACATCGTTCTCATCTTCGTCCCTTTCATCACGTTGTGTCCTCTTTACTACTACTATCAGAAGCATCCGATTAATTACCTTCTGCTTGCGGTTTTCACTCTCTCGCTTTCGTTTGTTGTTGGATTGAGCTGTGCTTTCACTAGCGAGAAAGTAATTCTGGAAGCTGTTATATTGACTGCTGTGGTGGTGATAGCTCTGACTCTCTACACGTTTTGGGCTGCAAGTAGAGGCTATGATTTCAACTTCCTTGGCCCCTTCTTGTTTGGTGCTATACTAGTTCTTATGGTCTTTGGGATGATTCAGATTTTCTTTCCATTGGGCAAGTTATCTACAATGATCTATGGTTGCTTGGCAGCAATTATATTCTGTGGCTACATCCTGTACGATACAGACAACTTGATCAAGAGATATTCCTATGATGAATTCATTTGGGCTTCTGTCTCCTTATATTTGGACATCATCAACCTTTTCCTGTCTTTGCTCACTATTTTCAGAGCTGCTGATAGTTGA

Protein sequence

>Msa0168640

MWNRNQPYGKTDVETGSRPLYPMMLESPELRWSFIRKVYIIIALQLLATIAVGAVVVTVRPISTFFATTGAGLALYIVLIFVPFITLCPLYYYYQKHPINYLLLAVFTLSLSFVVGLSCAFTSEKVILEAVILTAVVVIALTLYTFWAASRGYDFNFLGPFLFGAILVLMVFGMIQIFFPLGKLSTMIYGCLAAIIFCGYILYDTDNLIKRYSYDEFIWASVSLYLDIINLFLSLLTIFRAADS*