AlfalfaGEDB | Msa1030570

M. sativa cultivar zhongmu-4 / Msa1030570

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030570	XP_003624440.1	80.061	652	4	5	4	561	3	622	0.0	941

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030570	sp\|O22799\|Y2349_ARATH	40.031	647	236	16	1	544	1	598	3.58e-114	355

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030570	G7KW58	80.061	652	4	5	4	561	3	622	0.0	941

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0023830	Msa1030570	0.857340	1.744781e-62	-8.615850e-47
Msa0028570	Msa1030570	0.807952	3.931507e-50	-8.615850e-47
Msa0043680	Msa1030570	-0.800277	1.554515e-48	-8.615850e-47
Msa0044240	Msa1030570	0.813157	2.950337e-51	-8.615850e-47
Msa0049400	Msa1030570	0.834166	3.507046e-56	-8.615850e-47
Msa0071530	Msa1030570	0.800447	1.435402e-48	-8.615850e-47
Msa0074950	Msa1030570	0.848698	5.193739e-60	-8.615850e-47
Msa0092660	Msa1030570	-0.824754	6.799990e-54	-8.615850e-47
Msa0092730	Msa1030570	-0.813364	2.657778e-51	-8.615850e-47
Msa0129790	Msa1030570	0.831090	2.032229e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030570	MtrunA17_Chr7g0251611	80.061	652	4	5	4	561	3	622	0.0	941
Msa1030570	MtrunA17_Chr7g0214111	41.717	664	215	19	1	532	1	624	8.75e-126	382
Msa1030570	MtrunA17_Chr2g0311851	82.353	51	9	0	137	187	1	51	3.34e-19	82.8
Msa1030570	MtrunA17_Chr5g0421231	68.519	54	17	0	137	190	1	54	2.91e-15	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030570	AT2G33490.2	40.031	647	236	16	1	544	1	598	3.64e-115	355
Msa1030570	AT2G33490.1	40.031	647	236	16	1	544	1	598	3.64e-115	355
Msa1030570	AT2G33490.3	40.031	647	236	16	1	544	1	598	4.67e-115	355
Msa1030570	AT5G41100.2	38.424	622	232	20	1	544	2	550	1.29e-98	311
Msa1030570	AT5G41100.1	38.424	622	232	20	1	544	2	550	1.56e-98	311
Msa1030570	AT3G26910.1	36.434	645	252	20	1	544	1	588	1.05e-95	304
Msa1030570	AT3G26910.3	36.434	645	252	20	1	544	1	588	1.16e-95	304
Msa1030570	AT3G26910.2	36.434	645	252	20	1	544	1	588	1.60e-95	304
Msa1030570	AT2G33490.4	39.278	471	203	12	145	544	7	465	5.23e-75	246

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Find 130 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAACTCGCCGCCTT+CGG	0.474937	7_1:-64754683	None:intergenic
AAAACTCCGAGAGACGGTGA+TGG	0.591752	7_1:-64756150	None:intergenic
AAACTCCGAGAGACGGTGAT+GGG	0.595274	7_1:-64756149	None:intergenic
AAAGGAAGTACATAAGCATT+AGG	0.431746	7_1:-64755540	None:intergenic
AAATATAGTTGAATTTCTTC+CGG	0.476214	7_1:+64754512	Msa1030570:intron
AAGAAGAGACTCCGATGGTC+TGG	0.465966	7_1:-64752318	None:intergenic
AAGAGAAAGAGAAATGTAAA+TGG	0.232828	7_1:-64750013	None:intergenic
ACAAAACCTGAGCAGCATGG+TGG	0.713196	7_1:-64754403	None:intergenic
ACAAGGGGAGGAGAAGCACC+AGG	0.582384	7_1:-64755942	None:intergenic
ACAGCTCTCTGACTACTTGA+GGG	0.522828	7_1:-64756179	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGATTATGGTCAAAGAAA+GGG	-	chr7_1:64750063-64750082	None:intergenic	30.0%
CACAAATAGTAACATCGTAA+CGG	-	chr7_1:64750289-64750308	None:intergenic	30.0%
CCTAAGTATTAACTAGAAAG+GGG	-	chr7_1:64750871-64750890	None:intergenic	30.0%
CATATTTGGAAACATACATG+AGG	-	chr7_1:64750913-64750932	None:intergenic	30.0%
CAAATATGCAAGTCACATAT+TGG	+	chr7_1:64750925-64750944	Msa1030570:intron	30.0%
TTTCTTACTAAACGGTTGTT+TGG	+	chr7_1:64751015-64751034	Msa1030570:intron	30.0%
AACAGTGTTAAATCTCTTGA+GGG	-	chr7_1:64751165-64751184	None:intergenic	30.0%
ACTCTCTTCATCATCATTTA+AGG	-	chr7_1:64752004-64752023	None:intergenic	30.0%
AATCAACTAGCATAAAAGCT+AGG	-	chr7_1:64752069-64752088	None:intergenic	30.0%
AGTACATAAACATACCTCAA+CGG	-	chr7_1:64752357-64752376	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	64749996	64756343	64749996	ID=Msa1030570;Name=Msa1030570
chr7_1	mRNA	64749996	64756343	64749996	ID=Msa1030570-mRNA-1;Parent=Msa1030570;Name=Msa1030570-mRNA-1;_AED=0.21;_eAED=0.21;_QI=158\|0.6\|0.45\|1\|0.6\|0.54\|11\|0\|561
chr7_1	exon	64749996	64750267	64749996	ID=Msa1030570-mRNA-1:exon:14247;Parent=Msa1030570-mRNA-1
chr7_1	exon	64751961	64752024	64751961	ID=Msa1030570-mRNA-1:exon:14248;Parent=Msa1030570-mRNA-1
chr7_1	exon	64752135	64752361	64752135	ID=Msa1030570-mRNA-1:exon:14249;Parent=Msa1030570-mRNA-1
chr7_1	exon	64754100	64754128	64754100	ID=Msa1030570-mRNA-1:exon:14250;Parent=Msa1030570-mRNA-1
chr7_1	exon	64754211	64754418	64754211	ID=Msa1030570-mRNA-1:exon:14251;Parent=Msa1030570-mRNA-1
chr7_1	exon	64754520	64754753	64754520	ID=Msa1030570-mRNA-1:exon:14252;Parent=Msa1030570-mRNA-1
chr7_1	exon	64755002	64755055	64755002	ID=Msa1030570-mRNA-1:exon:14253;Parent=Msa1030570-mRNA-1
chr7_1	exon	64755393	64755506	64755393	ID=Msa1030570-mRNA-1:exon:14254;Parent=Msa1030570-mRNA-1
chr7_1	exon	64755540	64755762	64755540	ID=Msa1030570-mRNA-1:exon:14255;Parent=Msa1030570-mRNA-1
chr7_1	exon	64755850	64756050	64755850	ID=Msa1030570-mRNA-1:exon:14256;Parent=Msa1030570-mRNA-1
chr7_1	exon	64756129	64756343	64756129	ID=Msa1030570-mRNA-1:exon:14257;Parent=Msa1030570-mRNA-1
chr7_1	five_prime_UTR	64749996	64750153	64749996	ID=Msa1030570-mRNA-1:five_prime_utr;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64750154	64750267	64750154	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64751961	64752024	64751961	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64752135	64752361	64752135	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64754100	64754128	64754100	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64754211	64754418	64754211	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64754520	64754753	64754520	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64755002	64755055	64755002	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64755393	64755506	64755393	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64755540	64755762	64755540	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64755850	64756050	64755850	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1
chr7_1	CDS	64756129	64756343	64756129	ID=Msa1030570-mRNA-1:cds;Parent=Msa1030570-mRNA-1

Gene Sequence

>Msa1030570

ATGAAGTCCTCGCTTAACAAATTGAAGAGAATTGCACTTCACAAAACCGTTGGAAAAGAGAAGAAAGAGTTTCTTCCTTCCGTTAAGTTCGATGAACTCGCTCTCGCTGCTAAGTCACTGCAAGAAATGGGTACTTGTCTATTGGAGAAAACTGCCTTAAATGATGATGAAGAGAGTGGTAAAGTTTTGGGGATGCTTGGAAATGTGCAGCTTGACCTTCAGAAACTTGTTGATGGCTACGTAAGCTTTTGTTGGGTGCAACCTTTTGATTTTCTTCTTGAAGTGCAATTCATTTACAAAAACTTTTATAATGACTCTATCCCTTCTGTTCCACAGCGTTCTCATGTAGCACTGACCATAACCAGACCATCGGAGTCTCTTCTTAATGAACTAAGAACCGTTGAGGACATGAAGCGTCAATGTGATGAAAAAAGAGAAGTTTATGAATATATGATTGCCCAACAGAAAGAAAAAGGGAAGTCAAAAAGTGGTAAGGGTGAAAATATAACTTCACAGCATTTGAAAGCTGCTCACGATGAATATGAAGAGGAAGCAACACTCTGTGCTTTTCGGTTAAAATCCCTGAAACAAGGCCAGTCACGTAGTCTCCTAACACAAGCCGCTCGCCACCATGCTGCTCAGTTGAATTTCTTCCGGAAGGGACTTAAATCACTGGAGGCCGTTGAGCCACATGTTAGGATGGTTGCCGAGTTGCAACATATTGATTACCAATTCAGTGGCCTTGAAGATGATGATGGTGAAGGCAGTTTTGAATATGATGGGAATGAGTATGAGTACGAGGCCACCGAAGGCGGCGAGTTGAGTTTTAACTACAGATCAAACAAGGATGTCCCCACATCGCCAAACTCAGCAGAGGTGGAAGAATCAGACCGTTCAAACATTCGAGCTTCAACCACAGAAACTGCAGAGACAAGTTTAGACAAGAGCCATGTAGATTTTAAAGTATCAAATAGAGATCCACCAAGAGTCAGCAGCTATTCAGCTCCAATATTTGCAGAAAAGAAATTTGACCCAGCCGAGAAACCTAATGCTTATGTACTTCCTTTACCTGTCAACATCAAAGAAACAAAAACTGCACCACGCTTAAGTGCAAGTGCATCTTCACATGATTTGTGGCATTCATCTCCTTTGGATGAAAAAAAGAACGGGAAAGATTTTGCTGATGGTAAACTGTCAGAACCAGCCATCCCTAGAGTCTCTATTCTCAAAGAAAGCAACAGTGACACTTCATCAGCCCAGTTACCACGTCCATTGACTAATAAGCCATTGTCTGTAAAACCTGTCTCTGGGGGTTTTTCACGGTTGCCGATACCCCAACCTTCCTCTCCAAAAGCATCTCCTGGTGCTTCTCCTCCCCTTGTTTCTTCACCTAGGATAAGTGAACTACATGAGCTTCCTAGACCCCCTGCTAATCAAACCAGCAAGGCAACAAAATCTTCTCGAGTAGCATCTCCACTTCCAACTCCACCCATCACCGTCTCTCGGAGTTTTTCCATACCCTCAAGTAGTCAGAGAGCTGTGGTAATAAATGTTGCTAATAAGTATTTGCATACTCACCAAATTCCAGAAAAGGTTGAAGAAGCTGCATCACCTCCACTAACACCTTTATCCCAGAGAGCATCAGCTCTATCTGATTTAGCGTCTCGCTCTAGTGAAATCCAA

Protein sequence

>Msa1030570

MKSSLNKLKRIALHKTVGKEKKEFLPSVKFDELALAAKSLQEMGTCLLEKTALNDDEESGKVLGMLGNVQLDLQKLVDGYVSFCWVQPFDFLLEVQFIYKNFYNDSIPSVPQRSHVALTITRPSESLLNELRTVEDMKRQCDEKREVYEYMIAQQKEKGKSKSGKGENITSQHLKAAHDEYEEEATLCAFRLKSLKQGQSRSLLTQAARHHAAQLNFFRKGLKSLEAVEPHVRMVAELQHIDYQFSGLEDDDGEGSFEYDGNEYEYEATEGGELSFNYRSNKDVPTSPNSAEVEESDRSNIRASTTETAETSLDKSHVDFKVSNRDPPRVSSYSAPIFAEKKFDPAEKPNAYVLPLPVNIKETKTAPRLSASASSHDLWHSSPLDEKKNGKDFADGKLSEPAIPRVSILKESNSDTSSAQLPRPLTNKPLSVKPVSGGFSRLPIPQPSSPKASPGASPPLVSSPRISELHELPRPPANQTSKATKSSRVASPLPTPPITVSRSFSIPSSSQRAVVINVANKYLHTHQIPEKVEEAASPPLTPLSQRASALSDLASRSSEIQ