AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560060 MtrunA17_Chr4g0049931 94.643 56 3 0 62 117 2 57 4.90e-27 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 78 sgRNAs with CRISPR-Local

Find 807 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTTCCTTGAGGCATATT+TGG 0.193132 4_1:-59302249 Msa0560060:exon
GTGGGAATGGTAGGTAAATT+TGG 0.271860 4_1:-59302186 Msa0560060:three_prime_UTR
GCAATAGATGGCGAGCTTCT+AGG 0.294792 4_1:-59302149 Msa0560060:three_prime_UTR
GGTGGTAATGTAGTTGGTTT+TGG 0.298989 4_1:-59302213 Msa0560060:three_prime_UTR
TTGATAACTTGATGAATTGT+AGG 0.320372 4_1:-59302065 Msa0560060:three_prime_UTR
AAAATTGCAAAAGATCTTGA+TGG 0.335739 4_1:+59301929 None:intergenic
AGATTTGAAGGAGGGTAGTT+CGG 0.335918 4_1:-59301956 Msa0560060:three_prime_UTR
TAAAGCTGCAATGAAAGATT+TGG 0.356427 4_1:-59302097 Msa0560060:three_prime_UTR
GAAGGTGGTGGGGAGAGAAA+TGG 0.369879 4_1:-59312396 Msa0560060:CDS
GGCTAGAGGTTGAAGGTGGT+GGG 0.374720 4_1:-59312407 Msa0560060:CDS
AGATGGAATTGTTGGAATAT+TGG 0.374933 4_1:-59302337 Msa0560060:CDS
GTGTTGTTGTTTGCAATAGA+TGG 0.376065 4_1:-59302161 Msa0560060:three_prime_UTR
GGGAAAGTGGTTGGGATTGA+AGG 0.382492 4_1:-59302405 Msa0560060:CDS
GGGCTAGAGGTTGAAGGTGG+TGG 0.392102 4_1:-59312408 Msa0560060:CDS
TGGGGAGAGAAATGGGAAGG+AGG 0.398214 4_1:-59312388 Msa0560060:CDS
AAGGTGGTGGGGAGAGAAAT+GGG 0.402705 4_1:-59312395 Msa0560060:CDS
GGCTAGAAGTTGAAGGTGGT+GGG 0.405223 4_1:-59302446 Msa0560060:intron
TGAGGCATATTTGGAATTGA+AGG 0.405314 4_1:-59302240 Msa0560060:three_prime_UTR
ATAGACTCTGAGAGATTTGA+AGG 0.415480 4_1:-59301968 Msa0560060:three_prime_UTR
GGAAAAGTGGTTGGGATTGA+AGG 0.421474 4_1:-59312366 Msa0560060:CDS
GTTGGGATTGAAGGAAGGTT+TGG 0.423898 4_1:-59312357 Msa0560060:CDS
ATAGTGAGTTTAGGCATAGA+AGG 0.436994 4_1:-59302291 Msa0560060:CDS
GGGAAGGAGGGGAAAGTGGT+TGG 0.439412 4_1:-59302414 Msa0560060:CDS
GGAAGGAGGGGAAAGTGGTT+GGG 0.444157 4_1:-59302413 Msa0560060:CDS
GGCAAAGGTGGTAATGTAGT+TGG 0.444412 4_1:-59302219 Msa0560060:three_prime_UTR
GGTTGGGATTGAAGGAAGGT+TGG 0.454159 4_1:-59302397 Msa0560060:CDS
AGTGGTGGCATAGTGAGTTT+AGG 0.457061 4_1:-59302300 Msa0560060:CDS
GGGAAGGAGGGAAAAGTGGT+TGG 0.459768 4_1:-59312375 Msa0560060:CDS
GGAAGTGTTGGAATTGTTGT+AGG 0.460698 4_1:-59312294 Msa0560060:CDS
TGAAATTTGATGAGAAGGAA+AGG 0.464471 4_1:-59302009 Msa0560060:three_prime_UTR
AAATGGGAAGGAGGGAAAAG+TGG 0.465774 4_1:-59312379 Msa0560060:CDS
GAAATTTGATGAGAAGGAAA+GGG 0.466455 4_1:-59302008 Msa0560060:three_prime_UTR
AAATGGGAAGGAGGGGAAAG+TGG 0.467197 4_1:-59302418 Msa0560060:CDS
GTTGGGATTGAAGGAAGGTT+GGG 0.469467 4_1:-59302396 Msa0560060:CDS
GTTTAAGGGCTAGAGGTTGA+AGG 0.470530 4_1:-59312414 None:intergenic
TTAGGCATAGAAGGGATAGT+AGG 0.471087 4_1:-59302282 Msa0560060:CDS
GGAATTGTTGTAGGAAAGCT+TGG 0.472619 4_1:-59312285 Msa0560060:CDS
GGAATATTGGTAGGAAGACT+TGG 0.503031 4_1:-59302324 Msa0560060:CDS
AAGTGGTTGGGATTGAAGGA+AGG 0.508086 4_1:-59302401 Msa0560060:CDS
AAGTGGTTGGGATTGAAGGA+AGG 0.517698 4_1:-59312362 Msa0560060:CDS
TTTGGTAAAGTGGGAATGGT+AGG 0.519398 4_1:-59302195 Msa0560060:three_prime_UTR
AGTGAAGTGGCTGCTGGCAA+TGG 0.520284 4_1:-59302372 Msa0560060:CDS
GGAATTGTTGGAATATTGGT+AGG 0.523994 4_1:-59302333 Msa0560060:CDS
GGGGAGAGAAATGGGAAGGA+GGG 0.526974 4_1:-59312387 Msa0560060:CDS
GGAAGGAGGGAAAAGTGGTT+GGG 0.527181 4_1:-59312374 Msa0560060:CDS
ATGTTGAGAGATGGAATTGT+TGG 0.529497 4_1:-59302345 Msa0560060:CDS
TTGGTAGGAAGACTTGGAAG+TGG 0.530626 4_1:-59302318 Msa0560060:CDS
ACAATTCATCAAGTTATCAA+TGG 0.530685 4_1:+59302068 None:intergenic
GAAGGGATAGTAGGCAATGG+AGG 0.560608 4_1:-59302273 Msa0560060:CDS
TGCAATGAAAGATTTGGTTG+AGG 0.561942 4_1:-59302091 Msa0560060:three_prime_UTR
ATGTTGAGAGATGGAAGTGT+TGG 0.563754 4_1:-59312306 Msa0560060:CDS
GCTAGAGGTTGAAGGTGGTG+GGG 0.566516 4_1:-59312406 Msa0560060:CDS
AGTGAAGTGGCTGCTGGCAA+TGG 0.571552 4_1:-59312333 Msa0560060:CDS
ACTCTGAGAGATTTGAAGGA+GGG 0.576979 4_1:-59301964 Msa0560060:three_prime_UTR
GAAGTGGCTGCTGGCAATGG+TGG 0.580562 4_1:-59302369 Msa0560060:CDS
GAAGTGGCTGCTGGCAATGG+TGG 0.580562 4_1:-59312330 Msa0560060:CDS
TTTGGAATTGAAGGCAAAGG+TGG 0.580888 4_1:-59302231 Msa0560060:three_prime_UTR
TGGTGGGGAGAGAAATGGGA+AGG 0.580897 4_1:-59312391 Msa0560060:CDS
TTGGGAAGTGAAGTGGCTGC+TGG 0.584437 4_1:-59302378 Msa0560060:CDS
TTTGGAAGTGAAGTGGCTGC+TGG 0.587764 4_1:-59312339 Msa0560060:CDS
TCAATTCCAAATATGCCTCA+AGG 0.589431 4_1:+59302243 None:intergenic
TAAGGGCTAGAGGTTGAAGG+TGG 0.593849 4_1:-59312411 None:intergenic
ACTAATGAGTATATTTGTGA+GGG 0.594991 4_1:-59302041 Msa0560060:three_prime_UTR
GTTGTAGGAAAGCTTGGAAG+TGG 0.595347 4_1:-59312279 Msa0560060:CDS
AACTAATGAGTATATTTGTG+AGG 0.600208 4_1:-59302042 Msa0560060:three_prime_UTR
GCTAGAAGTTGAAGGTGGTG+GGG 0.609650 4_1:-59302445 Msa0560060:intron
GTAGGAAGACTTGGAAGTGG+TGG 0.611131 4_1:-59302315 Msa0560060:CDS
ATATTTGGAATTGAAGGCAA+AGG 0.615183 4_1:-59302234 Msa0560060:three_prime_UTR
GACTCTGAGAGATTTGAAGG+AGG 0.615687 4_1:-59301965 Msa0560060:three_prime_UTR
TAGTGAGTTTAGGCATAGAA+GGG 0.616158 4_1:-59302290 Msa0560060:CDS
AGGAAGGTTTGGAAGTGAAG+TGG 0.622568 4_1:-59312346 Msa0560060:CDS
ATAGAAGGGATAGTAGGCAA+TGG 0.624968 4_1:-59302276 Msa0560060:CDS
AGAAGGAAAGGGATAGTGCA+TGG 0.627727 4_1:-59301997 Msa0560060:three_prime_UTR
AGGAAGGTTGGGAAGTGAAG+TGG 0.630070 4_1:-59302385 Msa0560060:CDS
GTAGGAAAGCTTGGAAGTGG+TGG 0.639209 4_1:-59312276 Msa0560060:CDS
AATGGTGGAATGTTGAGAGA+TGG 0.653205 4_1:-59302354 Msa0560060:CDS
AATGGTGGAATGTTGAGAGA+TGG 0.653205 4_1:-59312315 Msa0560060:CDS
AATGGAGGAAGATTTCCTTG+AGG 0.717776 4_1:-59302258 Msa0560060:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATATATAAAATAGAAA+GGG + chr4_1:59302528-59302547 None:intergenic 10.0%
!! TTGAAATATATAAAATAGAA+AGG + chr4_1:59302529-59302548 None:intergenic 10.0%
!!! GTTTTTAAATATTTTTTGTA+TGG - chr4_1:59302576-59302595 Msa0560060:intron 10.0%
!!! AAAAATTATGAATTTTGTTA+TGG + chr4_1:59310462-59310481 None:intergenic 10.0%
!! AATAAAACATGAATTAAATA+TGG + chr4_1:59310598-59310617 None:intergenic 10.0%
!! AAAAAAATAAAATAACAGAT+TGG - chr4_1:59310832-59310851 Msa0560060:intron 10.0%
!!! ATATAAATGAACTTTTTTTT+TGG + chr4_1:59311498-59311517 None:intergenic 10.0%
!! AAAAGAAAAAAAAAATACAA+AGG - chr4_1:59311684-59311703 Msa0560060:intron 10.0%
!!! AAATATTTTTTGTATGGATT+TGG - chr4_1:59302582-59302601 Msa0560060:intron 15.0%
!!! TCATTTTTTAGTATTTGAAT+GGG + chr4_1:59302869-59302888 None:intergenic 15.0%
!!! TTCATTTTTTAGTATTTGAA+TGG + chr4_1:59302870-59302889 None:intergenic 15.0%
!! AAATAAAATAAAAACTTCGA+CGG + chr4_1:59302955-59302974 None:intergenic 15.0%
!!! TTAAACTTACATCAATTTTT+TGG + chr4_1:59303105-59303124 None:intergenic 15.0%
!! GAAAGAAAAAAAAAATACAA+AGG + chr4_1:59303891-59303910 None:intergenic 15.0%
!!! TTGTCTCTTTTAATTTTTTT+GGG + chr4_1:59304132-59304151 None:intergenic 15.0%
!!! AATCTAAAATTAAGTGATTT+GGG + chr4_1:59304726-59304745 None:intergenic 15.0%
!!! GATTTTTCAATTTAAACATT+AGG + chr4_1:59305322-59305341 None:intergenic 15.0%
!! CAAATGTATATATTATTATC+TGG - chr4_1:59305761-59305780 Msa0560060:intron 15.0%
!! TGTGAATTTAATGATAAATA+AGG + chr4_1:59308035-59308054 None:intergenic 15.0%
!! AAAACAAGTAACTAAAAAAA+AGG + chr4_1:59310072-59310091 None:intergenic 15.0%
!! TTAAAAATAAAGTCTAAAAG+TGG - chr4_1:59310700-59310719 Msa0560060:intron 15.0%
!! AATTTCTTAATGAAAAGAAA+CGG + chr4_1:59311540-59311559 None:intergenic 15.0%
!! AATTATGAAAAGATAATAAG+AGG - chr4_1:59311556-59311575 Msa0560060:intron 15.0%
!!! TATATCTTTGTTTTATTGTA+CGG + chr4_1:59311719-59311738 None:intergenic 15.0%
!! AAAATTGCAAAAACTTTGTA+TGG + chr4_1:59302421-59302440 None:intergenic 20.0%
!! ATATATAAAATAGAAAGGGT+TGG + chr4_1:59302524-59302543 None:intergenic 20.0%
!! AATAAAATAAAAACTTCGAC+GGG + chr4_1:59302954-59302973 None:intergenic 20.0%
!!! TTTTAAATAAATCAACTCAG+AGG - chr4_1:59302975-59302994 Msa0560060:intron 20.0%
!! AGAAAAAAAAATCAGTCTTT+AGG - chr4_1:59303158-59303177 Msa0560060:intron 20.0%
!!! ACGATTTTATGAAAAGTAAA+GGG + chr4_1:59303288-59303307 None:intergenic 20.0%
!!! TACGATTTTATGAAAAGTAA+AGG + chr4_1:59303289-59303308 None:intergenic 20.0%
!!! AGTTTCTTTGTTTTATTGTA+TGG - chr4_1:59303856-59303875 Msa0560060:intron 20.0%
!!! CTTGTCTCTTTTAATTTTTT+TGG + chr4_1:59304133-59304152 None:intergenic 20.0%
!!! ATTGGTTTAAAATATGTGTA+TGG + chr4_1:59304192-59304211 None:intergenic 20.0%
!!! GGATTGATTTTTATTTTTCT+AGG - chr4_1:59304653-59304672 Msa0560060:intron 20.0%
!!! GAATCTAAAATTAAGTGATT+TGG + chr4_1:59304727-59304746 None:intergenic 20.0%
!! TAAATAGATTGAAGAAACAT+AGG + chr4_1:59304929-59304948 None:intergenic 20.0%
!! TATGTTTCTTCAATCTATTT+AGG - chr4_1:59304928-59304947 Msa0560060:intron 20.0%
!! ATGTTTCTTCAATCTATTTA+GGG - chr4_1:59304929-59304948 Msa0560060:intron 20.0%
!! AATGGTACAATATTCTTATA+TGG + chr4_1:59305011-59305030 None:intergenic 20.0%
!!! TTCTATTTCCAAAATTTTAG+TGG + chr4_1:59305354-59305373 None:intergenic 20.0%
!!! ATTGTTTTTTAAAGAAAGTC+AGG + chr4_1:59305869-59305888 None:intergenic 20.0%
!! TAGATTATGTTGTATCATTA+AGG + chr4_1:59305904-59305923 None:intergenic 20.0%
!!! AAAGCATCTAAATTACAAAA+TGG - chr4_1:59306097-59306116 Msa0560060:intron 20.0%
!! TTAGTACTAGTAAAAAGATT+AGG + chr4_1:59306513-59306532 None:intergenic 20.0%
!!! AATTGAATTGGGATTTTATT+GGG - chr4_1:59307719-59307738 Msa0560060:intron 20.0%
!!! ATTAGTTTGTAAATTAGCAT+TGG + chr4_1:59307912-59307931 None:intergenic 20.0%
!! TGTTATGTAAACACAATTAT+CGG + chr4_1:59309577-59309596 None:intergenic 20.0%
!! AAGTAACTAAAAAAAAGGAA+AGG + chr4_1:59310067-59310086 None:intergenic 20.0%
!! TAAGTAACTGAGTAAAATTT+GGG + chr4_1:59310114-59310133 None:intergenic 20.0%
!! ATTGTATTTCAAACTCAAAT+TGG - chr4_1:59310156-59310175 Msa0560060:intron 20.0%
!! AGATATTAATATGAGTACAA+TGG + chr4_1:59310326-59310345 None:intergenic 20.0%
!!! TGAATTTTTATATTTTTGGC+TGG - chr4_1:59310565-59310584 Msa0560060:intron 20.0%
!!! TGGTGATTGAAAATTTTATA+AGG - chr4_1:59310720-59310739 Msa0560060:intron 20.0%
!! GATCAATTCTCTATATAAAT+TGG + chr4_1:59310940-59310959 None:intergenic 20.0%
!!! AAAAGAAAGTGTCTTATAAA+TGG + chr4_1:59311124-59311143 None:intergenic 20.0%
!! TTATAAAATCCGAAATCTAT+AGG + chr4_1:59311173-59311192 None:intergenic 20.0%
!!! TTTCGGATTTTATAATTTGT+CGG - chr4_1:59311178-59311197 Msa0560060:intron 20.0%
!! TACAAAATAATTTGATGTAC+CGG + chr4_1:59311248-59311267 None:intergenic 20.0%
!!! TATTTTGAAATTTGATGAGA+AGG - chr4_1:59312282-59312301 Msa0560060:CDS 20.0%
! TAAAAGTAAAGTTGTGATGA+AGG - chr4_1:59302232-59302251 Msa0560060:three_prime_UTR 25.0%
! ATTCATCATCAAACTATCAA+TGG + chr4_1:59302270-59302289 None:intergenic 25.0%
!!! ATAGTTTGATGATGAATTGT+AGG - chr4_1:59302273-59302292 Msa0560060:CDS 25.0%
!!! TGTATAGAGATAATTTGCTT+TGG - chr4_1:59302314-59302333 Msa0560060:CDS 25.0%
!!! GTATAGAGATAATTTGCTTT+GGG - chr4_1:59302315-59302334 Msa0560060:CDS 25.0%
!! ATAGAGTAAGAGATATTTTG+AGG - chr4_1:59302375-59302394 Msa0560060:CDS 25.0%
!!! TAGAGTAAGAGATATTTTGA+GGG - chr4_1:59302376-59302395 Msa0560060:CDS 25.0%
!!! TCTTTGACAAAAGCATTTTT+TGG - chr4_1:59302457-59302476 Msa0560060:intron 25.0%
!!! AAAGCATTTTTTGGTTAGAT+TGG - chr4_1:59302466-59302485 Msa0560060:intron 25.0%
! AGTAAAAAGTTCAGAAAACA+GGG + chr4_1:59302677-59302696 None:intergenic 25.0%
! AAGTAAAAAGTTCAGAAAAC+AGG + chr4_1:59302678-59302697 None:intergenic 25.0%
! AAAAATGAATTTCTCCATTG+TGG - chr4_1:59302881-59302900 Msa0560060:intron 25.0%
!! TTGATAACCTTATGAATTGT+AGG + chr4_1:59303348-59303367 None:intergenic 25.0%
! ACAATTCATAAGGTTATCAA+TGG - chr4_1:59303348-59303367 Msa0560060:intron 25.0%
! ACTTGGAAAGAAATGTTTAA+GGG + chr4_1:59303753-59303772 None:intergenic 25.0%
! AACTTGGAAAGAAATGTTTA+AGG + chr4_1:59303754-59303773 None:intergenic 25.0%
! ATTTATCTTTCAGTATGCTT+AGG + chr4_1:59304315-59304334 None:intergenic 25.0%
! TGTTTCTTCAATCTATTTAG+GGG - chr4_1:59304930-59304949 Msa0560060:intron 25.0%
! GGATATTATCTTTGTATAGA+TGG + chr4_1:59305054-59305073 None:intergenic 25.0%
! ATGAGGTCAAAATAAGTTAT+CGG + chr4_1:59305222-59305241 None:intergenic 25.0%
! AATAAATTGCTTATAACACC+TGG - chr4_1:59305271-59305290 Msa0560060:intron 25.0%
! TTATGTTGTATCATTAAGGA+AGG + chr4_1:59305900-59305919 None:intergenic 25.0%
! AAAAAGATTAGGAAAGATTC+TGG + chr4_1:59306502-59306521 None:intergenic 25.0%
! GTCTAATAGGAAAAAGAATT+GGG + chr4_1:59306659-59306678 None:intergenic 25.0%
!!! TAATGGACTTTTGATGATAA+TGG - chr4_1:59307624-59307643 Msa0560060:intron 25.0%
! TAATTGTGGTGAATTGAATT+GGG - chr4_1:59307708-59307727 Msa0560060:intron 25.0%
!! GAATTGAATTGGGATTTTAT+TGG - chr4_1:59307718-59307737 Msa0560060:intron 25.0%
! TGAAATACATTTATCAGTTC+TGG - chr4_1:59307886-59307905 Msa0560060:intron 25.0%
! CAATATCAAAAGAAAAGGAA+TGG + chr4_1:59307943-59307962 None:intergenic 25.0%
! AGCTACAATATCAAAAGAAA+AGG + chr4_1:59307948-59307967 None:intergenic 25.0%
!! CACTAAAACATCAAAAGTTT+TGG - chr4_1:59308130-59308149 Msa0560060:intron 25.0%
!!! CTCTAAAACATCAAAAGAAA+AGG - chr4_1:59308166-59308185 Msa0560060:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG - chr4_1:59308171-59308190 Msa0560060:intron 25.0%
!!! TTTTTTAAGTCATTGGCTTT+CGG + chr4_1:59308273-59308292 None:intergenic 25.0%
! CCAATGACTTAAAAAATCAA+GGG - chr4_1:59308277-59308296 Msa0560060:intron 25.0%
!! GCAAAGATGCAAAATTTTTA+AGG + chr4_1:59308378-59308397 None:intergenic 25.0%
!! AAATTTTGCATCTTTGCTTT+TGG - chr4_1:59308381-59308400 Msa0560060:intron 25.0%
! TTCTAATAAATTCTGCGTAT+GGG + chr4_1:59308425-59308444 None:intergenic 25.0%
! ATTCTAATAAATTCTGCGTA+TGG + chr4_1:59308426-59308445 None:intergenic 25.0%
! AATATAGTGAGAAGATAACT+TGG - chr4_1:59308443-59308462 Msa0560060:intron 25.0%
! AGATATGAATATGAGTACAA+TGG + chr4_1:59308553-59308572 None:intergenic 25.0%
!!! TTTTCGAAAGAATGTTGATT+TGG - chr4_1:59309668-59309687 Msa0560060:intron 25.0%
!!! AATCTCTTTTCTGTTTTGAA+AGG - chr4_1:59309740-59309759 Msa0560060:intron 25.0%
!! TACAAAATCTATTTTGTGTC+TGG - chr4_1:59309795-59309814 Msa0560060:intron 25.0%
! ACTAAAAAAAAGGAAAGGAA+AGG + chr4_1:59310062-59310081 None:intergenic 25.0%
! AAGTAACTGAGTAAAATTTG+GGG + chr4_1:59310113-59310132 None:intergenic 25.0%
! CTAAGTAACTGAGTAAAATT+TGG + chr4_1:59310115-59310134 None:intergenic 25.0%
!!! ATGAATTTTGTTATGGATCA+TGG + chr4_1:59310455-59310474 None:intergenic 25.0%
! AGGCTAAACTTAATAATTTG+CGG - chr4_1:59310884-59310903 Msa0560060:intron 25.0%
! GTGAATAAACAAAAACAGAT+GGG + chr4_1:59310967-59310986 None:intergenic 25.0%
! TGTGAATAAACAAAAACAGA+TGG + chr4_1:59310968-59310987 None:intergenic 25.0%
! AGGACAAGTAAGAAATTAAT+AGG + chr4_1:59311153-59311172 None:intergenic 25.0%
!! TATAATTTGTCGGACTATAA+CGG - chr4_1:59311188-59311207 Msa0560060:intron 25.0%
! ACAATTCATCAAGTTATCAA+TGG + chr4_1:59312231-59312250 None:intergenic 25.0%
!! TTGATAACTTGATGAATTGT+AGG - chr4_1:59312231-59312250 Msa0560060:intron 25.0%
! AACTAATGAGTATATTTGTG+AGG - chr4_1:59312254-59312273 Msa0560060:intron 25.0%
! ACTAATGAGTATATTTGTGA+GGG - chr4_1:59312255-59312274 Msa0560060:intron 25.0%
! AAAATTGCAAAAGATCTTGA+TGG + chr4_1:59312370-59312389 None:intergenic 25.0%
!!! CATTTTTTGGTTAGATTGGT+TGG - chr4_1:59302470-59302489 Msa0560060:intron 30.0%
AGAATGTAATATCTGAGAGT+TGG - chr4_1:59302633-59302652 Msa0560060:intron 30.0%
!! TGAGAGTTGGTAATCTAATT+GGG - chr4_1:59302646-59302665 Msa0560060:intron 30.0%
GTAAAAAGTTCAGAAAACAG+GGG + chr4_1:59302676-59302695 None:intergenic 30.0%
ATAGTTGAAGCAAGATTTGA+AGG + chr4_1:59303248-59303267 None:intergenic 30.0%
TATGAAAAGTAAAGGGATAG+TGG + chr4_1:59303281-59303300 None:intergenic 30.0%
AAGAAGTAAAGCTATGATGA+AGG + chr4_1:59303386-59303405 None:intergenic 30.0%
!!! GTTTTGTTGTTTGCAATAGA+TGG + chr4_1:59303450-59303469 None:intergenic 30.0%
TTTCTTTCTACTTACCAGTT+TGG - chr4_1:59303903-59303922 Msa0560060:intron 30.0%
AACTACCTAATGTAAATCGT+TGG - chr4_1:59304022-59304041 Msa0560060:intron 30.0%
TAATTAATGCCTGTGTTTGA+AGG + chr4_1:59304105-59304124 None:intergenic 30.0%
TCAAACACAGGCATTAATTA+TGG - chr4_1:59304105-59304124 Msa0560060:intron 30.0%
!! ACTAGTTTAAGTTGCTAGTT+AGG + chr4_1:59304232-59304251 None:intergenic 30.0%
CCAACAATAGGTTTATTTGT+GGG + chr4_1:59304279-59304298 None:intergenic 30.0%
ACCAACAATAGGTTTATTTG+TGG + chr4_1:59304280-59304299 None:intergenic 30.0%
! TATCTTTGCTGTGAATATGA+AGG + chr4_1:59304444-59304463 None:intergenic 30.0%
ATGGTAAAATTCATCATCGT+AGG + chr4_1:59304568-59304587 None:intergenic 30.0%
! CGATGATGAATTTTACCATT+TGG - chr4_1:59304569-59304588 Msa0560060:intron 30.0%
AAGAAGAATTTGGATCCAAA+TGG + chr4_1:59304587-59304606 None:intergenic 30.0%
ATTTGGATCCAAATTCTTCT+TGG - chr4_1:59304586-59304605 Msa0560060:intron 30.0%
TATATAAGCCCTGTAAAGAA+AGG + chr4_1:59304689-59304708 None:intergenic 30.0%
TCTATGATCTTCTCAACAAT+AGG - chr4_1:59304745-59304764 Msa0560060:intron 30.0%
ATATGCTCCTATGTGTATTT+AGG - chr4_1:59304778-59304797 Msa0560060:intron 30.0%
TGTTCTCACATTTGAAAGAA+AGG + chr4_1:59304888-59304907 None:intergenic 30.0%
TTTCAAATGTGAGAACAACA+AGG - chr4_1:59304891-59304910 Msa0560060:intron 30.0%
GCAAAGTATATATCTTTGTG+AGG + chr4_1:59304956-59304975 None:intergenic 30.0%
ATAAGACCTTATCATGAACA+GGG + chr4_1:59305170-59305189 None:intergenic 30.0%
AATAAGACCTTATCATGAAC+AGG + chr4_1:59305171-59305190 None:intergenic 30.0%
TAAGTTATCGGCATTACATA+AGG + chr4_1:59305210-59305229 None:intergenic 30.0%
! TTACTCAGCCACTAAAATTT+TGG - chr4_1:59305343-59305362 Msa0560060:intron 30.0%
ATCATGATTTCTCAAAGTGT+AGG + chr4_1:59305397-59305416 None:intergenic 30.0%
! TGAGCTAATTTTGAATTGCT+GGG + chr4_1:59305427-59305446 None:intergenic 30.0%
! TTGAGCTAATTTTGAATTGC+TGG + chr4_1:59305428-59305447 None:intergenic 30.0%
ATTTGATTGTGTCTCCAATA+TGG + chr4_1:59305461-59305480 None:intergenic 30.0%
TTGAAAATGCTGAGAAACAT+TGG - chr4_1:59305506-59305525 Msa0560060:intron 30.0%
!!! TGTTTTAAAAGGCAGTTTCT+GGG + chr4_1:59305567-59305586 None:intergenic 30.0%
!!! TTGTTTTAAAAGGCAGTTTC+TGG + chr4_1:59305568-59305587 None:intergenic 30.0%
!!! GAAACTGCCTTTTAAAACAA+AGG - chr4_1:59305568-59305587 Msa0560060:intron 30.0%
! TATAGCTTTTGCAGTATTTG+AGG + chr4_1:59305943-59305962 None:intergenic 30.0%
ATGCTGAGGATAATATTGAT+GGG + chr4_1:59306210-59306229 None:intergenic 30.0%
AATGCTGAGGATAATATTGA+TGG + chr4_1:59306211-59306230 None:intergenic 30.0%
TTGGGTTTATTATGATGAAG+AGG + chr4_1:59306641-59306660 None:intergenic 30.0%
CGTCTAATAGGAAAAAGAAT+TGG + chr4_1:59306660-59306679 None:intergenic 30.0%
! TGATTCTAAAGATGTGAATG+GGG + chr4_1:59306737-59306756 None:intergenic 30.0%
! GTGATTCTAAAGATGTGAAT+GGG + chr4_1:59306738-59306757 None:intergenic 30.0%
!!! TTTTTTCCATTAGGGTTTTC+TGG + chr4_1:59306760-59306779 None:intergenic 30.0%
! AGATTCTTCGTTTTGTACTT+GGG + chr4_1:59306785-59306804 None:intergenic 30.0%
! TAGATTCTTCGTTTTGTACT+TGG + chr4_1:59306786-59306805 None:intergenic 30.0%
! CTATGTATGATAGTGATCTA+CGG + chr4_1:59307200-59307219 None:intergenic 30.0%
ATCATACATAGCTTTCTTAG+CGG - chr4_1:59307209-59307228 Msa0560060:intron 30.0%
GTAATTGTGGTGAATTGAAT+TGG - chr4_1:59307707-59307726 Msa0560060:intron 30.0%
ATCAAAAGAAAAGGAATGGA+GGG + chr4_1:59308175-59308194 None:intergenic 30.0%
TATCAAAAGAAAAGGAATGG+AGG + chr4_1:59307940-59307959 None:intergenic 30.0%
! TCTTTTGATATTGTAGCTCT+TGG - chr4_1:59307950-59307969 Msa0560060:intron 30.0%
ATTCACATGTGATAAACCAA+AGG - chr4_1:59308048-59308067 Msa0560060:intron 30.0%
! TTTATGGTGTTTTCCAACAA+GGG - chr4_1:59308081-59308100 Msa0560060:intron 30.0%
ATCAAAAGAAAAGGAATGGA+GGG - chr4_1:59308175-59308194 Msa0560060:intron 30.0%
GCCAATGACTTAAAAAATCA+AGG - chr4_1:59308276-59308295 Msa0560060:intron 30.0%
!!! CCCTTGATTTTTTAAGTCAT+TGG + chr4_1:59308280-59308299 None:intergenic 30.0%
ATCTTCATCTTCATCAATGT+CGG + chr4_1:59308751-59308770 None:intergenic 30.0%
! ATGGAAAATCCATCGAATTT+TGG + chr4_1:59308888-59308907 None:intergenic 30.0%
ATTACATGACGAGTTTATTG+TGG - chr4_1:59309217-59309236 Msa0560060:intron 30.0%
ATCTGATTCAAAGTAACTTC+TGG + chr4_1:59309636-59309655 None:intergenic 30.0%
AGTAACTGAGTAAAATTTGG+GGG + chr4_1:59310112-59310131 None:intergenic 30.0%
AACATAGTGAGAAGATAACT+TGG - chr4_1:59310216-59310235 Msa0560060:intron 30.0%
! TTGTCGACTATATCTCATAA+TGG - chr4_1:59310859-59310878 Msa0560060:intron 30.0%
!! GACTATATCTCATAATGGAT+AGG - chr4_1:59310864-59310883 Msa0560060:intron 30.0%
!! TTGACGAATCTGTTTGTTAT+TGG + chr4_1:59310911-59310930 None:intergenic 30.0%
CTTACTTGTCCTATAGATTT+CGG - chr4_1:59311161-59311180 Msa0560060:intron 30.0%
! ATAATTTGTCGGACTATAAC+GGG - chr4_1:59311189-59311208 Msa0560060:intron 30.0%
!!! GTGGTTTTTTTCTTCAAACT+TGG + chr4_1:59311300-59311319 None:intergenic 30.0%
TTTGAAGAAAAAAACCACAC+CGG - chr4_1:59311302-59311321 Msa0560060:intron 30.0%
CCATAAATCATTCTCATCAT+TGG + chr4_1:59311346-59311365 None:intergenic 30.0%
CCAATGATGAGAATGATTTA+TGG - chr4_1:59311343-59311362 Msa0560060:intron 30.0%
ACCATTTAGCATACGATTAA+AGG - chr4_1:59311386-59311405 Msa0560060:intron 30.0%
CCATTTAGCATACGATTAAA+GGG - chr4_1:59311387-59311406 Msa0560060:intron 30.0%
! TTCTTTTCTACTTACCAGTT+TGG + chr4_1:59311671-59311690 None:intergenic 30.0%
!! AACTTGGAAAGAAGTGTTTA+AGG - chr4_1:59311828-59311847 Msa0560060:intron 30.0%
!! ACTTGGAAAGAAGTGTTTAA+GGG - chr4_1:59311829-59311848 Msa0560060:intron 30.0%
AGATGGAATTGTTGGAATAT+TGG - chr4_1:59311959-59311978 Msa0560060:intron 30.0%
! ATATTTGGAATTGAAGGCAA+AGG - chr4_1:59312062-59312081 Msa0560060:intron 30.0%
TAAAGCTGCAATGAAAGATT+TGG - chr4_1:59312199-59312218 Msa0560060:intron 30.0%
TGAAATTTGATGAGAAGGAA+AGG - chr4_1:59312287-59312306 Msa0560060:CDS 30.0%
GAAATTTGATGAGAAGGAAA+GGG - chr4_1:59312288-59312307 Msa0560060:CDS 30.0%
ATAGTGAGTTTAGGCATAGA+AGG - chr4_1:59302044-59302063 Msa0560060:three_prime_UTR 35.0%
TAGTGAGTTTAGGCATAGAA+GGG - chr4_1:59302045-59302064 Msa0560060:three_prime_UTR 35.0%
AATGTTGGAATTGAAGGCAA+AGG - chr4_1:59302101-59302120 Msa0560060:three_prime_UTR 35.0%
!! GTGTTGTTGTTTGCAAAAGA+TGG - chr4_1:59302174-59302193 Msa0560060:three_prime_UTR 35.0%
ATGATGAATTGTAGGAGCTA+AGG - chr4_1:59302281-59302300 Msa0560060:CDS 35.0%
! TTTGAGGGTAAGTTTGACTT+TGG - chr4_1:59302391-59302410 Msa0560060:CDS 35.0%
CTAAACGCTCAAATGTATGA+TGG - chr4_1:59302498-59302517 Msa0560060:intron 35.0%
!! CTGAGAGTTGGTAATCTAAT+TGG - chr4_1:59302645-59302664 Msa0560060:intron 35.0%
GTGTATATGAAGATCCACAA+TGG + chr4_1:59302898-59302917 None:intergenic 35.0%
AGATTTGAAGGAGGGTAATT+TGG + chr4_1:59303236-59303255 None:intergenic 35.0%
TTGAAGCAAGATTTGAAGGA+GGG + chr4_1:59303244-59303263 None:intergenic 35.0%
!! AAAAGTAAAGGGATAGTGGA+TGG + chr4_1:59303277-59303296 None:intergenic 35.0%
CTTATGAATTGTAGGAGCTA+AGG + chr4_1:59303340-59303359 None:intergenic 35.0%
CTTAGCTCCTACAATTCATA+AGG - chr4_1:59303338-59303357 Msa0560060:intron 35.0%
AATGTTGGAATTGAAGGCAA+AGG + chr4_1:59302101-59302120 None:intergenic 35.0%
TAGTGAGTTTAGGCATAGAA+GGG + chr4_1:59302045-59302064 None:intergenic 35.0%
ATAGTGAGTTTAGGCATAGA+AGG + chr4_1:59302044-59302063 None:intergenic 35.0%
CTTGATTGTGTGTTTATACG+AGG - chr4_1:59303820-59303839 Msa0560060:intron 35.0%
TACCTAATGTAAATCGTTGG+AGG - chr4_1:59304025-59304044 Msa0560060:intron 35.0%
GCTTTGCTTTGCAAAGAAAT+TGG + chr4_1:59304210-59304229 None:intergenic 35.0%
ACTAGCAACTTAAACTAGTG+TGG - chr4_1:59304233-59304252 Msa0560060:intron 35.0%
! GGGTTTTACTACTATGTGTA+CGG + chr4_1:59304259-59304278 None:intergenic 35.0%
CCCACAAATAAACCTATTGT+TGG - chr4_1:59304276-59304295 Msa0560060:intron 35.0%
AACCTATTGTTGGTACTTTC+AGG - chr4_1:59304286-59304305 Msa0560060:intron 35.0%
ACCTATTGTTGGTACTTTCA+GGG - chr4_1:59304287-59304306 Msa0560060:intron 35.0%
AACATCCTAAACTACACTTC+GGG + chr4_1:59304355-59304374 None:intergenic 35.0%
GAACATCCTAAACTACACTT+CGG + chr4_1:59304356-59304375 None:intergenic 35.0%
! GTATCTTGCTGTGAATATGA+AGG + chr4_1:59304388-59304407 None:intergenic 35.0%
CAGCAAAGATACACACATAT+AGG - chr4_1:59304453-59304472 Msa0560060:intron 35.0%
CAATCCTCTTAGCTTATGTT+TGG + chr4_1:59304639-59304658 None:intergenic 35.0%
! CACATAGGAGCATATAACTT+TGG + chr4_1:59304773-59304792 None:intergenic 35.0%
GCAAAATATATCTCTCTGTG+AGG + chr4_1:59304806-59304825 None:intergenic 35.0%
AGAAGATACGAGCACTTATA+TGG + chr4_1:59304857-59304876 None:intergenic 35.0%
TATCTTCTGTCTGAGCTAAA+TGG + chr4_1:59305029-59305048 None:intergenic 35.0%
!!! GCTGTGTTTTGTTAATTTGC+CGG + chr4_1:59305098-59305117 None:intergenic 35.0%
TAAGATCCCTGTTCATGATA+AGG - chr4_1:59305161-59305180 Msa0560060:intron 35.0%
TCAAGATACCAATGCCATAT+TGG - chr4_1:59305444-59305463 Msa0560060:intron 35.0%
AGACACAATCAAATGCAAGT+TGG - chr4_1:59305467-59305486 Msa0560060:intron 35.0%
!!! TGCCTTTTAAAACAAAGGCT+TGG - chr4_1:59305573-59305592 Msa0560060:intron 35.0%
!!! CACCAAGCCTTTGTTTTAAA+AGG + chr4_1:59305578-59305597 None:intergenic 35.0%
CACATCATTCCAAGTATGTT+TGG + chr4_1:59305615-59305634 None:intergenic 35.0%
ACTTGGAATGATGTGATGAA+AGG - chr4_1:59305620-59305639 Msa0560060:intron 35.0%
TTTGCTCTGTTGTAAGTTTG+AGG + chr4_1:59305671-59305690 None:intergenic 35.0%
!!! TCTGTTGTTTTCTTCTTGAG+TGG + chr4_1:59305700-59305719 None:intergenic 35.0%
CATTTGTATGTCTGATCTGA+TGG + chr4_1:59305747-59305766 None:intergenic 35.0%
GGGCAATAATGAGTGTATTT+CGG + chr4_1:59305826-59305845 None:intergenic 35.0%
AGGATAATATTGATGGGGTT+GGG + chr4_1:59306204-59306223 None:intergenic 35.0%
TGCTGAGGATAATATTGATG+GGG + chr4_1:59306209-59306228 None:intergenic 35.0%
TGGTAACTTGGATTTGAATG+TGG + chr4_1:59306299-59306318 None:intergenic 35.0%
ACTATTAAGAAAGCTGCACT+GGG + chr4_1:59306343-59306362 None:intergenic 35.0%
TACTATTAAGAAAGCTGCAC+TGG + chr4_1:59306344-59306363 None:intergenic 35.0%
! AAAGATTCTGGTAATGCTAG+TGG + chr4_1:59306490-59306509 None:intergenic 35.0%
!! ATGATTCTGATGATGGTGAT+TGG + chr4_1:59306579-59306598 None:intergenic 35.0%
AGCGATAATGATTCTGATGA+TGG + chr4_1:59306586-59306605 None:intergenic 35.0%
TCATCAGAATCATTATCGCT+CGG - chr4_1:59306586-59306605 Msa0560060:intron 35.0%
TTGTTTCCATGTTCCATGAA+AGG + chr4_1:59306685-59306704 None:intergenic 35.0%
TTCATGGAACATGGAAACAA+AGG - chr4_1:59306685-59306704 Msa0560060:intron 35.0%
! ATGGAAACAAAGGTGCAATA+GGG - chr4_1:59306695-59306714 Msa0560060:intron 35.0%
! GGTGATTCTAAAGATGTGAA+TGG + chr4_1:59306739-59306758 None:intergenic 35.0%
!!! CTTGGGGATTTTTTCCATTA+GGG + chr4_1:59306768-59306787 None:intergenic 35.0%
!!! ACTTGGGGATTTTTTCCATT+AGG + chr4_1:59306769-59306788 None:intergenic 35.0%
! GATTCTTCGTTTTGTACTTG+GGG + chr4_1:59306784-59306803 None:intergenic 35.0%
GGTATGAAGATTGTACCTTA+CGG + chr4_1:59306870-59306889 None:intergenic 35.0%
TCGTAGTAAACGTAACAGTA+AGG - chr4_1:59306901-59306920 Msa0560060:intron 35.0%
CGTAGTAAACGTAACAGTAA+GGG - chr4_1:59306902-59306921 Msa0560060:intron 35.0%
TCATACATAGCTTTCTTAGC+GGG - chr4_1:59307210-59307229 Msa0560060:intron 35.0%
!!! TGGACTTTTGATGATAATGG+TGG - chr4_1:59307627-59307646 Msa0560060:intron 35.0%
! AGAGGATAGTTTGGTAATTG+TGG - chr4_1:59307694-59307713 Msa0560060:intron 35.0%
CTATCCTGAAAAACATGTGT+TGG - chr4_1:59307769-59307788 Msa0560060:intron 35.0%
TGAAAAACATGTGTTGGAGT+GGG - chr4_1:59307775-59307794 Msa0560060:intron 35.0%
AGTGTGAAGTTAGTATAGCA+CGG + chr4_1:59307819-59307838 None:intergenic 35.0%
CATGTTAAAGGCTTAGTCAA+AGG + chr4_1:59307851-59307870 None:intergenic 35.0%
CATAAACTAGTTGTGACCTT+TGG + chr4_1:59308067-59308086 None:intergenic 35.0%
! CAAAGGTCACAACTAGTTTA+TGG - chr4_1:59308065-59308084 Msa0560060:intron 35.0%
! GTTTATGGTGTTTTCCAACA+AGG - chr4_1:59308080-59308099 Msa0560060:intron 35.0%
TTTCTCAAGTTTACCCTTGT+TGG + chr4_1:59308097-59308116 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG - chr4_1:59308174-59308193 Msa0560060:intron 35.0%
! AATGGAGGGAGTATATTTAC+CGG - chr4_1:59308189-59308208 Msa0560060:intron 35.0%
TTCAAAGTCTTTCACTCAAC+CGG + chr4_1:59308211-59308230 None:intergenic 35.0%
AGCAAGTTATCTAGATAGCT+TGG - chr4_1:59308468-59308487 Msa0560060:intron 35.0%
ATGGTGAGAGCTATTTATAG+AGG + chr4_1:59308534-59308553 None:intergenic 35.0%
AGATAACCATAGAGACTCAT+AGG + chr4_1:59308597-59308616 None:intergenic 35.0%
TGATACCATGTTATGGATCA+TGG + chr4_1:59308682-59308701 None:intergenic 35.0%
! CATCATCATTTTCATCCCTA+GGG + chr4_1:59308713-59308732 None:intergenic 35.0%
TCTCATGATTGCATCTGATT+CGG - chr4_1:59308816-59308835 Msa0560060:intron 35.0%
TTTCGATTCTCCAATCATTC+CGG - chr4_1:59308842-59308861 Msa0560060:intron 35.0%
!!! TCGAATTTTGGTTCGATTGA+AGG + chr4_1:59308876-59308895 None:intergenic 35.0%
TCAATCGAACCAAAATTCGA+TGG - chr4_1:59308876-59308895 Msa0560060:intron 35.0%
!! GATGGATTTTCCATCAAGAT+TGG - chr4_1:59308894-59308913 Msa0560060:intron 35.0%
TGAAATCTCACCAATCTTGA+TGG + chr4_1:59308907-59308926 None:intergenic 35.0%
AAACGTAAGGTGATTGTTGT+CGG + chr4_1:59309192-59309211 None:intergenic 35.0%
CATGTAATGTGCAAAACGTA+AGG + chr4_1:59309205-59309224 None:intergenic 35.0%
TTTATTGTGGAATTCGATCC+TGG - chr4_1:59309230-59309249 Msa0560060:intron 35.0%
! ACAACAAGATTTGAGCCTTT+TGG - chr4_1:59309407-59309426 Msa0560060:intron 35.0%
! AATCTGAGATTCCTTGTTTG+CGG - chr4_1:59309473-59309492 Msa0560060:intron 35.0%
! GATTTGGTATAAGCTGTTGT+TGG - chr4_1:59309684-59309703 Msa0560060:intron 35.0%
! TTTCAGAAGCATGTTTCAGA+AGG - chr4_1:59309829-59309848 Msa0560060:intron 35.0%
AGAAGCAAGTTTATCATCAG+TGG - chr4_1:59309889-59309908 Msa0560060:intron 35.0%
!!! TTTTGGTTCAGAAGCGTTTT+TGG - chr4_1:59309953-59309972 Msa0560060:intron 35.0%
TTTCTCACATGTTCTCAGAT+GGG - chr4_1:59309992-59310011 Msa0560060:intron 35.0%
TAACTGAGTAAAATTTGGGG+GGG + chr4_1:59310110-59310129 None:intergenic 35.0%
GTAACTGAGTAAAATTTGGG+GGG + chr4_1:59310111-59310130 None:intergenic 35.0%
AGCAAGTTATCTAGATAGCT+TGG - chr4_1:59308468-59308487 Msa0560060:intron 35.0%
ATGGTGAGAGCTATTTATAG+AGG + chr4_1:59308534-59308553 None:intergenic 35.0%
AGATAACCATAGAGACTCAT+AGG + chr4_1:59308597-59308616 None:intergenic 35.0%
TTATGGATCATGGAATCTCA+GGG + chr4_1:59310445-59310464 None:intergenic 35.0%
GATCCTCTCTCATATTATAC+CGG + chr4_1:59311324-59311343 None:intergenic 35.0%
CCCTTTAATCGTATGCTAAA+TGG + chr4_1:59311390-59311409 None:intergenic 35.0%
GACAATGCATGATATATGCA+AGG - chr4_1:59311450-59311469 Msa0560060:intron 35.0%
AAGGTCTTGAATTCGAATCA+CGG - chr4_1:59311469-59311488 Msa0560060:intron 35.0%
TTAATGAAAAGAAACGGAGC+GGG + chr4_1:59311534-59311553 None:intergenic 35.0%
CTTAATGAAAAGAAACGGAG+CGG + chr4_1:59311535-59311554 None:intergenic 35.0%
TACAAGCAATAGTACCAAAC+TGG - chr4_1:59311654-59311673 Msa0560060:intron 35.0%
GCTGATCAAATAATGCAACT+TGG - chr4_1:59311812-59311831 Msa0560060:intron 35.0%
ATGTTGAGAGATGGAATTGT+TGG - chr4_1:59311951-59311970 Msa0560060:intron 35.0%
GGAATTGTTGGAATATTGGT+AGG - chr4_1:59311963-59311982 Msa0560060:intron 35.0%
ATAGTGAGTTTAGGCATAGA+AGG - chr4_1:59302044-59302063 Msa0560060:three_prime_UTR 35.0%
TAGTGAGTTTAGGCATAGAA+GGG - chr4_1:59302045-59302064 Msa0560060:three_prime_UTR 35.0%
AGATTTCCTTGAGGCATATT+TGG - chr4_1:59312047-59312066 Msa0560060:intron 35.0%
TCAATTCCAAATATGCCTCA+AGG + chr4_1:59312056-59312075 None:intergenic 35.0%
! TGAGGCATATTTGGAATTGA+AGG - chr4_1:59312056-59312075 Msa0560060:intron 35.0%
!!! TGTAGTTGGTTTTGGTAAAG+TGG - chr4_1:59312091-59312110 Msa0560060:intron 35.0%
!!! GTAGTTGGTTTTGGTAAAGT+GGG - chr4_1:59312092-59312111 Msa0560060:intron 35.0%
!! GTGTTGTTGTTTGCAATAGA+TGG - chr4_1:59312135-59312154 Msa0560060:intron 35.0%
! TGCAATGAAAGATTTGGTTG+AGG - chr4_1:59312205-59312224 Msa0560060:intron 35.0%
! ATAGACTCTGAGAGATTTGA+AGG - chr4_1:59312328-59312347 Msa0560060:CDS 35.0%
! AATGGTGGAATGTTGAGAGA+TGG - chr4_1:59301981-59302000 Msa0560060:three_prime_UTR 40.0%
! ATGTTGAGAGATGGAAGTGT+TGG - chr4_1:59301990-59302009 Msa0560060:three_prime_UTR 40.0%
!! GGAAGTGTTGGAATTGTTGT+AGG - chr4_1:59302002-59302021 Msa0560060:three_prime_UTR 40.0%
GGAATTGTTGTAGGAAAGCT+TGG - chr4_1:59302011-59302030 Msa0560060:three_prime_UTR 40.0%
TTAGGCATAGAAGGGATAGT+AGG - chr4_1:59302053-59302072 Msa0560060:three_prime_UTR 40.0%
ATAGAAGGGATAGTAGGCAA+TGG - chr4_1:59302059-59302078 Msa0560060:three_prime_UTR 40.0%
AATGGAGGAAGATTTCCTTG+AGG - chr4_1:59302077-59302096 Msa0560060:three_prime_UTR 40.0%
AGATTTCCTTGAGGCAATGT+TGG - chr4_1:59302086-59302105 Msa0560060:three_prime_UTR 40.0%
TCAATTCCAACATTGCCTCA+AGG + chr4_1:59303526-59303545 None:intergenic 40.0%
TGAGGCAATGTTGGAATTGA+AGG - chr4_1:59302095-59302114 Msa0560060:three_prime_UTR 40.0%
!! GGTGGTAATGTAGTTGGTTT+TGG - chr4_1:59302122-59302141 Msa0560060:three_prime_UTR 40.0%
!!! TGTAGTTGGTTTTGGCAAAG+TGG - chr4_1:59302130-59302149 Msa0560060:three_prime_UTR 40.0%
!!! GTAGTTGGTTTTGGCAAAGT+GGG - chr4_1:59302131-59302150 Msa0560060:three_prime_UTR 40.0%
GTGGGAATGGTAGGTAAATT+TGG - chr4_1:59302149-59302168 Msa0560060:three_prime_UTR 40.0%
! TGGGATTTGATGAGAAGCAT+AGG - chr4_1:59302334-59302353 Msa0560060:CDS 40.0%
! GGGATTTGATGAGAAGCATA+GGG - chr4_1:59302335-59302354 Msa0560060:CDS 40.0%
GTTGAAGCAAGATTTGAAGG+AGG + chr4_1:59303245-59303264 None:intergenic 40.0%
GTGGGAATGGTAGGTAAATT+TGG + chr4_1:59302149-59302168 None:intergenic 40.0%
TGAGGCAATGTTGGAATTGA+AGG + chr4_1:59302095-59302114 None:intergenic 40.0%
TCAATTCCAACATTGCCTCA+AGG - chr4_1:59303526-59303545 Msa0560060:intron 40.0%
AGATTTCCTTGAGGCAATGT+TGG + chr4_1:59302086-59302105 None:intergenic 40.0%
AATGGAGGAAGATTTCCTTG+AGG + chr4_1:59302077-59302096 None:intergenic 40.0%
ATAGAAGGGATAGTAGGCAA+TGG + chr4_1:59302059-59302078 None:intergenic 40.0%
TTAGGCATAGAAGGGATAGT+AGG + chr4_1:59302053-59302072 None:intergenic 40.0%
TTTGTAGGAAGACTTGGAAG+TGG + chr4_1:59303604-59303623 None:intergenic 40.0%
GGAAGATTTGTAGGAAGACT+TGG + chr4_1:59303610-59303629 None:intergenic 40.0%
GGAAGAGTTGGAAGATTTGT+AGG + chr4_1:59303619-59303638 None:intergenic 40.0%
ATGTTGAGAGATGGAAGAGT+TGG + chr4_1:59303631-59303650 None:intergenic 40.0%
! AATGGTGGAATGTTGAGAGA+TGG + chr4_1:59301981-59302000 None:intergenic 40.0%
GTTGGAATTGAAGGAAGGTT+GGG + chr4_1:59303682-59303701 None:intergenic 40.0%
AAGTGGTTGGAATTGAAGGA+AGG + chr4_1:59303687-59303706 None:intergenic 40.0%
GTTTAAGGGCTAGATGTTGA+AGG + chr4_1:59303739-59303758 None:intergenic 40.0%
GCTGATCACATAATGCAACT+TGG + chr4_1:59303770-59303789 None:intergenic 40.0%
TACAAGCAATATCGCCAAAC+TGG + chr4_1:59303920-59303939 None:intergenic 40.0%
CTCCTCCAACGATTTACATT+AGG + chr4_1:59304030-59304049 None:intergenic 40.0%
CTAATGTAAATCGTTGGAGG+AGG - chr4_1:59304028-59304047 Msa0560060:intron 40.0%
!!! TGCAGAGTTTTTGAGACTGT+AGG - chr4_1:59304069-59304088 Msa0560060:intron 40.0%
!! ACCCTGAAAGTACCAACAAT+AGG + chr4_1:59304291-59304310 None:intergenic 40.0%
AGCACACACCAAGAAGAATT+TGG + chr4_1:59304597-59304616 None:intergenic 40.0%
CTCACCAAACATAAGCTAAG+AGG - chr4_1:59304632-59304651 Msa0560060:intron 40.0%
TCCCATTGCCTTTCTTTACA+GGG - chr4_1:59304678-59304697 Msa0560060:intron 40.0%
! TGAGGCACCTAAATACACAT+AGG + chr4_1:59304788-59304807 None:intergenic 40.0%
CTTAGACCTAGTATGCTTCT+TGG - chr4_1:59304825-59304844 Msa0560060:intron 40.0%
! TGTGTTCCAAGAAGCATACT+AGG + chr4_1:59304834-59304853 None:intergenic 40.0%
ATTTGCCGGCATTTCTTGTA+GGG + chr4_1:59305084-59305103 None:intergenic 40.0%
AATTTGCCGGCATTTCTTGT+AGG + chr4_1:59305085-59305104 None:intergenic 40.0%
CAAAACACAGCAGTGAACAA+AGG - chr4_1:59305107-59305126 Msa0560060:intron 40.0%
TCATGAACAGGGATCTTAGA+AGG + chr4_1:59305159-59305178 None:intergenic 40.0%
CTTGACTGCAAGTGTAAATG+AGG + chr4_1:59305239-59305258 None:intergenic 40.0%
TTGTGTCTCCAATATGGCAT+TGG + chr4_1:59305455-59305474 None:intergenic 40.0%
ATTCCAAGTATGTTTGGTCC+AGG + chr4_1:59305609-59305628 None:intergenic 40.0%
GAAAAGAAGACTAGACTTGC+TGG - chr4_1:59305642-59305661 Msa0560060:intron 40.0%
! TGTTTTCTTCTTGAGTGGTG+TGG + chr4_1:59305695-59305714 None:intergenic 40.0%
CCCTAAACTCTTTGTATGTG+CGG + chr4_1:59305791-59305810 None:intergenic 40.0%
CCGCACATACAAAGAGTTTA+GGG - chr4_1:59305788-59305807 Msa0560060:intron 40.0%
! GTGTATTTCGGAGTTTTACC+TGG + chr4_1:59305814-59305833 None:intergenic 40.0%
TACACACTCTCTCAGTAACA+GGG + chr4_1:59305846-59305865 None:intergenic 40.0%
GTGGGAGATGATAAGGTTAA+GGG + chr4_1:59306130-59306149 None:intergenic 40.0%
AGTGGGAGATGATAAGGTTA+AGG + chr4_1:59306131-59306150 None:intergenic 40.0%
TTAACCTTATCATCTCCCAC+TGG - chr4_1:59306130-59306149 Msa0560060:intron 40.0%
TTACCCATTCTCAATCCAGT+GGG + chr4_1:59306148-59306167 None:intergenic 40.0%
GAGGATAATATTGATGGGGT+TGG + chr4_1:59306205-59306224 None:intergenic 40.0%
GGAGTTCAGTAATGATGTAG+AGG + chr4_1:59306278-59306297 None:intergenic 40.0%
TGGGAATGAGAAGAATGTTG+GGG + chr4_1:59306419-59306438 None:intergenic 40.0%
CTGGGAATGAGAAGAATGTT+GGG + chr4_1:59306420-59306439 None:intergenic 40.0%
TCTGGGAATGAGAAGAATGT+TGG + chr4_1:59306421-59306440 None:intergenic 40.0%
! TTCTGGTAATGCTAGTGGTA+GGG + chr4_1:59306485-59306504 None:intergenic 40.0%
! ATTCTGGTAATGCTAGTGGT+AGG + chr4_1:59306486-59306505 None:intergenic 40.0%
!! TTCTGATGATGGTGATTGGA+GGG + chr4_1:59306575-59306594 None:intergenic 40.0%
!! ATTCTGATGATGGTGATTGG+AGG + chr4_1:59306576-59306595 None:intergenic 40.0%
TTATGATGAAGAGGCAACTG+CGG + chr4_1:59306632-59306651 None:intergenic 40.0%
CCATGAAAGGATCGTCTAAT+AGG + chr4_1:59306672-59306691 None:intergenic 40.0%
CCTATTAGACGATCCTTTCA+TGG - chr4_1:59306669-59306688 Msa0560060:intron 40.0%
! CATGGAAACAAAGGTGCAAT+AGG - chr4_1:59306694-59306713 Msa0560060:intron 40.0%
GAATCACCAGAAAACCCTAA+TGG - chr4_1:59306751-59306770 Msa0560060:intron 40.0%
GAATCTATCTCATTCACCTG+CGG - chr4_1:59306799-59306818 Msa0560060:intron 40.0%
GTACAATCTTCATACCCCTT+CGG - chr4_1:59306874-59306893 Msa0560060:intron 40.0%
TTTACTACGAGTATCCGAAG+GGG + chr4_1:59306891-59306910 None:intergenic 40.0%
GTTTACTACGAGTATCCGAA+GGG + chr4_1:59306892-59306911 None:intergenic 40.0%
AAAAACTCTAGATCGAGGGA+TGG + chr4_1:59307063-59307082 None:intergenic 40.0%
GAGGAAAAACTCTAGATCGA+GGG + chr4_1:59307067-59307086 None:intergenic 40.0%
!! CTCGATCTAGAGTTTTTCCT+CGG - chr4_1:59307066-59307085 Msa0560060:intron 40.0%
AGACCAAGCATCATGAACAA+GGG - chr4_1:59307245-59307264 Msa0560060:intron 40.0%
GAAGAATTCCGTACCAATCA+CGG - chr4_1:59307379-59307398 Msa0560060:intron 40.0%
ATCATTGATCCGAGATTCTC+CGG - chr4_1:59307407-59307426 Msa0560060:intron 40.0%
! TGCACTTAGGAGTTTGTTTG+CGG - chr4_1:59307533-59307552 Msa0560060:intron 40.0%
! TGGTGGTGAATTGACGATAA+TGG - chr4_1:59307607-59307626 Msa0560060:intron 40.0%
! GGATTTTATTGGGATTGTGC+TGG - chr4_1:59307729-59307748 Msa0560060:intron 40.0%
! CACTCCAACACATGTTTTTC+AGG + chr4_1:59307776-59307795 None:intergenic 40.0%
CTGAAAAACATGTGTTGGAG+TGG - chr4_1:59307774-59307793 Msa0560060:intron 40.0%
GAAAAACATGTGTTGGAGTG+GGG - chr4_1:59307776-59307795 Msa0560060:intron 40.0%
GTGTGAAGTTAGTATAGCAC+GGG + chr4_1:59307818-59307837 None:intergenic 40.0%
! AGCTCTTGGCACAAGTTTTA+AGG - chr4_1:59307964-59307983 Msa0560060:intron 40.0%
GGTTGAGTGAAAGACTTTGA+AGG - chr4_1:59308210-59308229 Msa0560060:intron 40.0%
GATTCTCCTATGAGTCTCTA+TGG - chr4_1:59308588-59308607 Msa0560060:intron 40.0%
AGAGCATAGTAGCATTCATG+TGG + chr4_1:59308621-59308640 None:intergenic 40.0%
ATCACTATGACCTTTATCCC+TGG - chr4_1:59308652-59308671 Msa0560060:intron 40.0%
TCACTATGACCTTTATCCCT+GGG - chr4_1:59308653-59308672 Msa0560060:intron 40.0%
TTATGGATCATGGAATCCCA+GGG + chr4_1:59308672-59308691 None:intergenic 40.0%
GGATTCCATGATCCATAACA+TGG - chr4_1:59308674-59308693 Msa0560060:intron 40.0%
ATCGCTCTGATACCATGTTA+TGG + chr4_1:59308689-59308708 None:intergenic 40.0%
! GCATCATCATTTTCATCCCT+AGG + chr4_1:59308714-59308733 None:intergenic 40.0%
ATCTTCATCAATGTCGGAAG+CGG + chr4_1:59308745-59308764 None:intergenic 40.0%
ATGCAATCATGAGAAGCTGA+AGG + chr4_1:59308810-59308829 None:intergenic 40.0%
TCGATTGAAGGAGTAGAAAC+CGG + chr4_1:59308864-59308883 None:intergenic 40.0%
GAGCAACGATTCATCAATTC+AGG + chr4_1:59309023-59309042 None:intergenic 40.0%
!! TTTCGTTGTTTCTGAAGCGT+CGG - chr4_1:59309046-59309065 Msa0560060:intron 40.0%
ATTCGTCATTCACACAACTC+CGG - chr4_1:59309073-59309092 Msa0560060:intron 40.0%
TTGGGATAGAGGAAGGAAAA+CGG - chr4_1:59309331-59309350 Msa0560060:intron 40.0%
GGAAGGAAAACGGTTATTCA+CGG - chr4_1:59309341-59309360 Msa0560060:intron 40.0%
AGAAGAAGACGAACTCCAAA+AGG + chr4_1:59309425-59309444 None:intergenic 40.0%
AGCGAATTCACGATGTATAG+AGG + chr4_1:59309449-59309468 None:intergenic 40.0%
!!! TTCAGAAGCGTTTTTGGTTC+AGG - chr4_1:59309959-59309978 Msa0560060:intron 40.0%
CTTTCTCACATGTTCTCAGA+TGG - chr4_1:59309991-59310010 Msa0560060:intron 40.0%
AACTGAGTAAAATTTGGGGG+GGG + chr4_1:59310109-59310128 None:intergenic 40.0%
! ACTTTCCCACTTTGAGTTTG+AGG - chr4_1:59310182-59310201 Msa0560060:intron 40.0%
! CTTTCCCACTTTGAGTTTGA+GGG - chr4_1:59310183-59310202 Msa0560060:intron 40.0%
! TTTCCCACTTTGAGTTTGAG+GGG - chr4_1:59310184-59310203 Msa0560060:intron 40.0%
GATTCTCCTATGAGTCTCTA+TGG - chr4_1:59308588-59308607 Msa0560060:intron 40.0%
TCATGGAATCTCAGGGATAA+AGG + chr4_1:59310438-59310457 None:intergenic 40.0%
GTTATGGATCATGGAATCTC+AGG + chr4_1:59310446-59310465 None:intergenic 40.0%
CAACTTGAGTTAACTCACGT+TGG + chr4_1:59310992-59311011 None:intergenic 40.0%
TCTCTCATATTATACCGGTG+TGG + chr4_1:59311319-59311338 None:intergenic 40.0%
ACACCGGTATAATATGAGAG+AGG - chr4_1:59311318-59311337 Msa0560060:intron 40.0%
TAGCAACTGAGTTAAGCTCA+CGG + chr4_1:59311428-59311447 None:intergenic 40.0%
TGAGCTTAACTCAGTTGCTA+AGG - chr4_1:59311428-59311447 Msa0560060:intron 40.0%
GTGTGTGATGAAATTGTACG+AGG + chr4_1:59311755-59311774 None:intergenic 40.0%
GTTTAAGGGCTAGAAGTTGA+AGG - chr4_1:59311843-59311862 Msa0560060:intron 40.0%
!! AAGGTGGTGGGGAAAAAAAT+GGG - chr4_1:59311862-59311881 Msa0560060:intron 40.0%
! AATGGTGGAATGTTGAGAGA+TGG - chr4_1:59301981-59302000 Msa0560060:three_prime_UTR 40.0%
GGAATATTGGTAGGAAGACT+TGG - chr4_1:59311972-59311991 Msa0560060:intron 40.0%
TTAGGCATAGAAGGGATAGT+AGG - chr4_1:59302053-59302072 Msa0560060:three_prime_UTR 40.0%
ATAGAAGGGATAGTAGGCAA+TGG - chr4_1:59302059-59302078 Msa0560060:three_prime_UTR 40.0%
AATGGAGGAAGATTTCCTTG+AGG - chr4_1:59302077-59302096 Msa0560060:three_prime_UTR 40.0%
! TTTGGAATTGAAGGCAAAGG+TGG - chr4_1:59312065-59312084 Msa0560060:intron 40.0%
!! GGTGGTAATGTAGTTGGTTT+TGG - chr4_1:59302122-59302141 Msa0560060:three_prime_UTR 40.0%
!!! TGGTTTTGGTAAAGTGGGAA+TGG - chr4_1:59312097-59312116 Msa0560060:intron 40.0%
TTTGGTAAAGTGGGAATGGT+AGG - chr4_1:59312101-59312120 Msa0560060:intron 40.0%
GTGGGAATGGTAGGTAAATT+TGG - chr4_1:59302149-59302168 Msa0560060:three_prime_UTR 40.0%
! ACTCTGAGAGATTTGAAGGA+GGG - chr4_1:59312332-59312351 Msa0560060:CDS 40.0%
AGATTTGAAGGAGGGTAGTT+CGG - chr4_1:59312340-59312359 Msa0560060:CDS 40.0%
AAATGGGAAGGAGGGAAAAG+TGG - chr4_1:59301917-59301936 Msa0560060:three_prime_UTR 45.0%
GGAAAAGTGGTTGGGATTGA+AGG - chr4_1:59301930-59301949 Msa0560060:three_prime_UTR 45.0%
AAGTGGTTGGGATTGAAGGA+AGG - chr4_1:59301934-59301953 Msa0560060:three_prime_UTR 45.0%
GTTGGGATTGAAGGAAGGTT+TGG - chr4_1:59301939-59301958 Msa0560060:three_prime_UTR 45.0%
AGGAAGGTTTGGAAGTGAAG+TGG - chr4_1:59301950-59301969 Msa0560060:three_prime_UTR 45.0%
GTTGTAGGAAAGCTTGGAAG+TGG - chr4_1:59302017-59302036 Msa0560060:three_prime_UTR 45.0%
AGTGGTGGCATAGTGAGTTT+AGG - chr4_1:59302035-59302054 Msa0560060:three_prime_UTR 45.0%
GTTGGAATTGAAGGCAAAGG+TGG - chr4_1:59302104-59302123 Msa0560060:three_prime_UTR 45.0%
! GGCAAAGGTGGTAATGTAGT+TGG - chr4_1:59302116-59302135 Msa0560060:three_prime_UTR 45.0%
!!! TGGTTTTGGCAAAGTGGGAA+TGG - chr4_1:59302136-59302155 Msa0560060:three_prime_UTR 45.0%
TTTGGCAAAGTGGGAATGGT+AGG - chr4_1:59302140-59302159 Msa0560060:three_prime_UTR 45.0%
CAAAAGATGGCGAGCTTCTA+TGG - chr4_1:59302187-59302206 Msa0560060:three_prime_UTR 45.0%
! GATGAGAAGCATAGGGATAG+TGG - chr4_1:59302342-59302361 Msa0560060:CDS 45.0%
!! AGAAGCATAGGGATAGTGGA+TGG - chr4_1:59302346-59302365 Msa0560060:CDS 45.0%
TTTGGCAAAGTGGGAATGGT+AGG + chr4_1:59302140-59302159 None:intergenic 45.0%
!! GTAGTTGGCTTTGGCAAAGT+GGG + chr4_1:59303490-59303509 None:intergenic 45.0%
!! TGTAGTTGGCTTTGGCAAAG+TGG + chr4_1:59303491-59303510 None:intergenic 45.0%
! GGTGGTAATGTAGTTGGCTT+TGG + chr4_1:59303499-59303518 None:intergenic 45.0%
! GGCAAAGGTGGTAATGTAGT+TGG + chr4_1:59302116-59302135 None:intergenic 45.0%
GTTGGAATTGAAGGCAAAGG+TGG + chr4_1:59302104-59302123 None:intergenic 45.0%
AGTGGTGGCATAGTGAGTTT+AGG + chr4_1:59302035-59302054 None:intergenic 45.0%
GGTTGGAATTGAAGGAAGGT+TGG + chr4_1:59303683-59303702 None:intergenic 45.0%
GGGAAAGTGGTTGGAATTGA+AGG + chr4_1:59303691-59303710 None:intergenic 45.0%
!! AAGGTGGTGGGGAGAAAAAT+GGG + chr4_1:59303720-59303739 None:intergenic 45.0%
TAAGGGCTAGATGTTGAAGG+TGG + chr4_1:59303736-59303755 None:intergenic 45.0%
GATACGCATCCTTCAAACAC+AGG - chr4_1:59304093-59304112 Msa0560060:intron 45.0%
ACATGCCCGAAGTGTAGTTT+AGG - chr4_1:59304347-59304366 Msa0560060:intron 45.0%
CTCCCATTGCCTTTCTTTAC+AGG - chr4_1:59304677-59304696 Msa0560060:intron 45.0%
GCCCTGTAAAGAAAGGCAAT+GGG + chr4_1:59304682-59304701 None:intergenic 45.0%
AGCCCTGTAAAGAAAGGCAA+TGG + chr4_1:59304683-59304702 None:intergenic 45.0%
CATTTCTTGTAGGGATGTGG+TGG + chr4_1:59305075-59305094 None:intergenic 45.0%
CACATCCCTACAAGAAATGC+CGG - chr4_1:59305076-59305095 Msa0560060:intron 45.0%
ACCTGGCAAAATGCTTCATC+AGG - chr4_1:59305288-59305307 Msa0560060:intron 45.0%
!! TCCTGATGAAGCATTTTGCC+AGG + chr4_1:59305292-59305311 None:intergenic 45.0%
! TAAAAGGCAGTTTCTGGGTG+CGG + chr4_1:59305562-59305581 None:intergenic 45.0%
AAGCCTGGACCAAACATACT+TGG - chr4_1:59305603-59305622 Msa0560060:intron 45.0%
GCCGCACATACAAAGAGTTT+AGG - chr4_1:59305787-59305806 Msa0560060:intron 45.0%
! CATACAAAGAGTTTAGGGCC+AGG - chr4_1:59305793-59305812 Msa0560060:intron 45.0%
GTACACACTCTCTCAGTAAC+AGG + chr4_1:59305847-59305866 None:intergenic 45.0%
CAATCCAGTGGGAGATGATA+AGG + chr4_1:59306137-59306156 None:intergenic 45.0%
ATCTCCCACTGGATTGAGAA+TGG - chr4_1:59306141-59306160 Msa0560060:intron 45.0%
TCTCCCACTGGATTGAGAAT+GGG - chr4_1:59306142-59306161 Msa0560060:intron 45.0%
CTTACCCATTCTCAATCCAG+TGG + chr4_1:59306149-59306168 None:intergenic 45.0%
TGAGAATGGGTAAGCTACTG+AGG - chr4_1:59306155-59306174 Msa0560060:intron 45.0%
!!! GATGGGGTTGGGTTTTTTGA+GGG + chr4_1:59306193-59306212 None:intergenic 45.0%
!!! TGATGGGGTTGGGTTTTTTG+AGG + chr4_1:59306194-59306213 None:intergenic 45.0%
! TCTGGTAATGCTAGTGGTAG+GGG + chr4_1:59306484-59306503 None:intergenic 45.0%
!! TCTGATGATGGTGATTGGAG+GGG + chr4_1:59306574-59306593 None:intergenic 45.0%
GACGATCCTTTCATGGAACA+TGG - chr4_1:59306676-59306695 Msa0560060:intron 45.0%
AGGTGCAATAGGGTTCCAAT+TGG - chr4_1:59306705-59306724 Msa0560060:intron 45.0%
TGAATGGGGCTTCTTCCAAT+TGG + chr4_1:59306723-59306742 None:intergenic 45.0%
CGTTTACTACGAGTATCCGA+AGG + chr4_1:59306893-59306912 None:intergenic 45.0%
GCTTACGTTACCTTCCGTTT+CGG - chr4_1:59306939-59306958 Msa0560060:intron 45.0%
CGAGGAAAAACTCTAGATCG+AGG + chr4_1:59307068-59307087 None:intergenic 45.0%
!! TTTTTCCTCGGCGTTGGATT+TGG - chr4_1:59307078-59307097 Msa0560060:intron 45.0%
CAGACCAAGCATCATGAACA+AGG - chr4_1:59307244-59307263 Msa0560060:intron 45.0%
TCTCCCTTGTTCATGATGCT+TGG + chr4_1:59307251-59307270 None:intergenic 45.0%
! AAAGCGAATGGGTTCCGATT+AGG - chr4_1:59307285-59307304 Msa0560060:intron 45.0%
! AAGCGAATGGGTTCCGATTA+GGG - chr4_1:59307286-59307305 Msa0560060:intron 45.0%
TCAATGATCACCACCGTGAT+TGG + chr4_1:59307395-59307414 None:intergenic 45.0%
CGAAAGTTGGGTCAGATTCT+CGG - chr4_1:59307472-59307491 Msa0560060:intron 45.0%
GAAAGTTGGGTCAGATTCTC+GGG - chr4_1:59307473-59307492 Msa0560060:intron 45.0%
GAAACAGAGCTGAAGCTGAA+CGG + chr4_1:59307569-59307588 None:intergenic 45.0%
TCATGAGTGTCAGTTGACAG+TGG - chr4_1:59307659-59307678 Msa0560060:intron 45.0%
CTAAGCCTTTAACATGCCTC+CGG - chr4_1:59307855-59307874 Msa0560060:intron 45.0%
TAAGCCTTTAACATGCCTCC+GGG - chr4_1:59307856-59307875 Msa0560060:intron 45.0%
AATGTATTTCACTCCCCTCC+CGG + chr4_1:59307877-59307896 None:intergenic 45.0%
GGAGAGCAAGCAAGTTAGTT+AGG - chr4_1:59308489-59308508 Msa0560060:intron 45.0%
TCATGGAATCCCAGGGATAA+AGG + chr4_1:59308665-59308684 None:intergenic 45.0%
GTTATGGATCATGGAATCCC+AGG + chr4_1:59308673-59308692 None:intergenic 45.0%
AGATTCTGCTCCTGCAATTC+AGG - chr4_1:59308782-59308801 Msa0560060:intron 45.0%
GGAGTAGAAACCGGAATGAT+TGG + chr4_1:59308855-59308874 None:intergenic 45.0%
AGATTGAGGAGCTCTGCTTA+CGG - chr4_1:59309098-59309117 Msa0560060:intron 45.0%
ATTGTGGAATTCGATCCTGG+CGG - chr4_1:59309233-59309252 Msa0560060:intron 45.0%
ACAAACGGAAGGAACGGTAT+CGG + chr4_1:59309301-59309320 None:intergenic 45.0%
! GTTTTCCTTCCTCTATCCCA+AGG + chr4_1:59309332-59309351 None:intergenic 45.0%
ACAATACGAAGCCGCAAACA+AGG + chr4_1:59309487-59309506 None:intergenic 45.0%
! CATCAGTGGTTTTCAGAAGC+TGG - chr4_1:59309903-59309922 Msa0560060:intron 45.0%
CAGAAAGCAAGTTCAGAAGC+TGG - chr4_1:59309930-59309949 Msa0560060:intron 45.0%
!! GCAAGTTCAGAAGCTGGTTT+TGG - chr4_1:59309936-59309955 Msa0560060:intron 45.0%
AACACCCCTGGATTCAATCT+GGG - chr4_1:59310027-59310046 Msa0560060:intron 45.0%
AGAAGCCCAGATTGAATCCA+GGG + chr4_1:59310035-59310054 None:intergenic 45.0%
AAGAAGCCCAGATTGAATCC+AGG + chr4_1:59310036-59310055 None:intergenic 45.0%
ACTGAGTAAAATTTGGGGGG+GGG + chr4_1:59310108-59310127 None:intergenic 45.0%
! TTCCCACTTTGAGTTTGAGG+GGG - chr4_1:59310185-59310204 Msa0560060:intron 45.0%
GGAGAGCAAGCAAGTTAGTT+AGG - chr4_1:59308489-59308508 Msa0560060:intron 45.0%
TGCGTAAGTTAACTCACGCT+CGG - chr4_1:59311053-59311072 Msa0560060:intron 45.0%
AGCAACTGAGTTAAGCTCAC+GGG + chr4_1:59311427-59311446 None:intergenic 45.0%
TAAGGGCTAGAAGTTGAAGG+TGG - chr4_1:59311846-59311865 Msa0560060:intron 45.0%
!! GAAGGTGGTGGGGAAAAAAA+TGG - chr4_1:59311861-59311880 Msa0560060:intron 45.0%
TGGTGGGGAAAAAAATGGGA+AGG - chr4_1:59311866-59311885 Msa0560060:intron 45.0%
TGGGGAAAAAAATGGGAAGG+AGG - chr4_1:59311869-59311888 Msa0560060:intron 45.0%
GGGGAAAAAAATGGGAAGGA+GGG - chr4_1:59311870-59311889 Msa0560060:intron 45.0%
GGGAAAAAAATGGGAAGGAG+GGG - chr4_1:59311871-59311890 Msa0560060:intron 45.0%
AAGTGGTTGGGATTGAAGGA+AGG - chr4_1:59301934-59301953 Msa0560060:three_prime_UTR 45.0%
GTTGGGATTGAAGGAAGGTT+GGG - chr4_1:59301939-59301958 Msa0560060:three_prime_UTR 45.0%
TTGGTAGGAAGACTTGGAAG+TGG - chr4_1:59311978-59311997 Msa0560060:intron 45.0%
AGTGGTGGCATAGTGAGTTT+AGG - chr4_1:59302035-59302054 Msa0560060:three_prime_UTR 45.0%
! GGCAAAGGTGGTAATGTAGT+TGG - chr4_1:59302116-59302135 Msa0560060:three_prime_UTR 45.0%
AGAAGGAAAGGGATAGTGCA+TGG - chr4_1:59312299-59312318 Msa0560060:CDS 45.0%
! GACTCTGAGAGATTTGAAGG+AGG - chr4_1:59312331-59312350 Msa0560060:CDS 45.0%
!!! AATTATTTATCTTTTTTTTA+AGG + chr4_1:59303040-59303059 None:intergenic 5.0%
!! CAAAAATTTAATATATTTAT+AGG + chr4_1:59308319-59308338 None:intergenic 5.0%
!!! AATATGAATTTTTATATTTT+TGG - chr4_1:59310561-59310580 Msa0560060:intron 5.0%
!! AAGGTGGTGGGGAGAGAAAT+GGG - chr4_1:59301901-59301920 Msa0560060:three_prime_UTR 50.0%
GGAAGGAGGGAAAAGTGGTT+GGG - chr4_1:59301922-59301941 Msa0560060:three_prime_UTR 50.0%
TTTGGAAGTGAAGTGGCTGC+TGG - chr4_1:59301957-59301976 Msa0560060:three_prime_UTR 50.0%
GTAGGAAAGCTTGGAAGTGG+TGG - chr4_1:59302020-59302039 Msa0560060:three_prime_UTR 50.0%
GAAGGGATAGTAGGCAATGG+AGG - chr4_1:59302062-59302081 Msa0560060:three_prime_UTR 50.0%
GCTCACGTTCATGCTTGACA+TGG + chr4_1:59303416-59303435 None:intergenic 50.0%
GCAATAGATGGCGAGCTTCT+AGG + chr4_1:59312147-59312166 None:intergenic 50.0%
!! TGGCTTTGGCAAAGTGGGAA+TGG + chr4_1:59303485-59303504 None:intergenic 50.0%
GAAGGGATAGTAGGCAATGG+AGG + chr4_1:59302062-59302081 None:intergenic 50.0%
GTAGGAAGACTTGGAAGTGG+TGG + chr4_1:59311981-59312000 None:intergenic 50.0%
AGGAAGGTTGGGAAGTGAAG+TGG + chr4_1:59311911-59311930 None:intergenic 50.0%
AAATGGGAAGGAGGGGAAAG+TGG + chr4_1:59311878-59311897 None:intergenic 50.0%
GGGAGAAAAATGGGAAGGAG+GGG + chr4_1:59303711-59303730 None:intergenic 50.0%
GGGGAGAAAAATGGGAAGGA+GGG + chr4_1:59303712-59303731 None:intergenic 50.0%
TGGGGAGAAAAATGGGAAGG+AGG + chr4_1:59303713-59303732 None:intergenic 50.0%
TGGTGGGGAGAAAAATGGGA+AGG + chr4_1:59303716-59303735 None:intergenic 50.0%
!! GAAGGTGGTGGGGAGAAAAA+TGG + chr4_1:59303721-59303740 None:intergenic 50.0%
GCTAGATGTTGAAGGTGGTG+GGG + chr4_1:59303731-59303750 None:intergenic 50.0%
GGCTAGATGTTGAAGGTGGT+GGG + chr4_1:59303732-59303751 None:intergenic 50.0%
CGGCATTTCTTGTAGGGATG+TGG + chr4_1:59305078-59305097 None:intergenic 50.0%
! TAGAAAGCACGTGCAGATGC+AGG - chr4_1:59305369-59305388 Msa0560060:intron 50.0%
! GCTGAGAAACATTGGCTGAC+AGG - chr4_1:59305514-59305533 Msa0560060:intron 50.0%
TGGGTGCGGTGATATCTGTT+AGG + chr4_1:59305548-59305567 None:intergenic 50.0%
!!! AGGCTTGGTGTTTTCAAGCC+TGG - chr4_1:59305588-59305607 Msa0560060:intron 50.0%
GAATGCAACTGGCAATGCTG+AGG + chr4_1:59306224-59306243 None:intergenic 50.0%
TGCCAGTTGCATTCCCTTCA+CGG - chr4_1:59306230-59306249 Msa0560060:intron 50.0%
! CCTTACGGTGTCAGAGTTGT+CGG + chr4_1:59306855-59306874 None:intergenic 50.0%
CGGAAGGTAACGTAAGCTTC+TGG + chr4_1:59306936-59306955 None:intergenic 50.0%
! CTAGAGTTTTTCCTCGGCGT+TGG - chr4_1:59307072-59307091 Msa0560060:intron 50.0%
GGTTGCTGATACTGATGACC+CGG - chr4_1:59307132-59307151 Msa0560060:intron 50.0%
CTGATACTGATGACCCGGTT+GGG - chr4_1:59307137-59307156 Msa0560060:intron 50.0%
TGATACTGATGACCCGGTTG+GGG - chr4_1:59307138-59307157 Msa0560060:intron 50.0%
CATGAACAAGGGAGAAAGCG+TGG - chr4_1:59307256-59307275 Msa0560060:intron 50.0%
ATGGGTTCCGATTAGGGTCA+AGG - chr4_1:59307292-59307311 Msa0560060:intron 50.0%
CTCTCCTCCTTGACCCTAAT+CGG + chr4_1:59307302-59307321 None:intergenic 50.0%
ATTCGCGATGTGGTCGATGT+TGG - chr4_1:59307338-59307357 Msa0560060:intron 50.0%
!! GGTCGATGTTGGTGGTGTAT+CGG - chr4_1:59307349-59307368 Msa0560060:intron 50.0%
GAATTCCGTACCAATCACGG+TGG - chr4_1:59307382-59307401 Msa0560060:intron 50.0%
GATCACCACCGTGATTGGTA+CGG + chr4_1:59307390-59307409 None:intergenic 50.0%
GACAGCTAAGAGAAGCTCAG+AGG - chr4_1:59307446-59307465 Msa0560060:intron 50.0%
CTAAGTGCACGTGATCTGCA+CGG + chr4_1:59307522-59307541 None:intergenic 50.0%
TCTGTTTCCACCCTCCATAG+CGG - chr4_1:59307581-59307600 Msa0560060:intron 50.0%
GAGGAGAGGAGAGGATAGTT+TGG - chr4_1:59307685-59307704 Msa0560060:intron 50.0%
! GGATTGTGCTGGTGATGACA+TGG - chr4_1:59307740-59307759 Msa0560060:intron 50.0%
TGGTATCAGAGCGATACCCT+AGG - chr4_1:59308694-59308713 Msa0560060:intron 50.0%
GGTATCAGAGCGATACCCTA+GGG - chr4_1:59308695-59308714 Msa0560060:intron 50.0%
ATCAATGTCGGAAGCGGAAG+CGG + chr4_1:59308739-59308758 None:intergenic 50.0%
AGGAGCAGAATCTGCGTCAA+CGG + chr4_1:59308775-59308794 None:intergenic 50.0%
GCTGAAGGTTCCTGAATTGC+AGG + chr4_1:59308795-59308814 None:intergenic 50.0%
ACACAACTCCGGTGAGATTG+AGG - chr4_1:59309084-59309103 Msa0560060:intron 50.0%
ACGAACAACCACGAAGCCAA+AGG + chr4_1:59309140-59309159 None:intergenic 50.0%
TTGGCTTCGTGGTTGTTCGT+CGG - chr4_1:59309140-59309159 Msa0560060:intron 50.0%
CGTAAGGTGATTGTTGTCGG+AGG + chr4_1:59309189-59309208 None:intergenic 50.0%
GATACCGTTCCTTCCGTTTG+TGG - chr4_1:59309300-59309319 Msa0560060:intron 50.0%
TCCACCACAAACGGAAGGAA+CGG + chr4_1:59309307-59309326 None:intergenic 50.0%
AGGTATCCACCACAAACGGA+AGG + chr4_1:59309312-59309331 None:intergenic 50.0%
!! TCCGTTTGTGGTGGATACCT+TGG - chr4_1:59309312-59309331 Msa0560060:intron 50.0%
! CCCAAGGTATCCACCACAAA+CGG + chr4_1:59309316-59309335 None:intergenic 50.0%
!! CCGTTTGTGGTGGATACCTT+GGG - chr4_1:59309313-59309332 Msa0560060:intron 50.0%
! TGGTGGATACCTTGGGATAG+AGG - chr4_1:59309320-59309339 Msa0560060:intron 50.0%
GGATACCTTGGGATAGAGGA+AGG - chr4_1:59309324-59309343 Msa0560060:intron 50.0%
CGGTGACACATCTTAGAGAC+AGG - chr4_1:59309361-59309380 Msa0560060:intron 50.0%
TCACATGTTCTCAGATGGGC+TGG - chr4_1:59309996-59310015 Msa0560060:intron 50.0%
! CACATGTTCTCAGATGGGCT+GGG - chr4_1:59309997-59310016 Msa0560060:intron 50.0%
CAACACCCCTGGATTCAATC+TGG - chr4_1:59310026-59310045 Msa0560060:intron 50.0%
GAAGCCCAGATTGAATCCAG+GGG + chr4_1:59310034-59310053 None:intergenic 50.0%
TGAGTAAAATTTGGGGGGGG+GGG + chr4_1:59310106-59310125 None:intergenic 50.0%
CTGAGTAAAATTTGGGGGGG+GGG + chr4_1:59310107-59310126 None:intergenic 50.0%
GTCCCCCTCAAACTCAAAGT+GGG + chr4_1:59310190-59310209 None:intergenic 50.0%
AGTCCCCCTCAAACTCAAAG+TGG + chr4_1:59310191-59310210 None:intergenic 50.0%
!! CTCACGCTCGGCTATTTTGA+CGG - chr4_1:59311065-59311084 Msa0560060:intron 50.0%
!!! TCACGCTCGGCTATTTTGAC+GGG - chr4_1:59311066-59311085 Msa0560060:intron 50.0%
CCAAGAGCTGTCAAGTAGGA+CGG + chr4_1:59311220-59311239 None:intergenic 50.0%
ATGAAAAGAAACGGAGCGGG+TGG + chr4_1:59311531-59311550 None:intergenic 50.0%
GGCTAGAAGTTGAAGGTGGT+GGG - chr4_1:59311850-59311869 Msa0560060:intron 50.0%
GCTAGAAGTTGAAGGTGGTG+GGG - chr4_1:59311851-59311870 Msa0560060:intron 50.0%
AAATGGGAAGGAGGGGAAAG+TGG - chr4_1:59311878-59311897 Msa0560060:intron 50.0%
GGGAAAGTGGTTGGGATTGA+AGG - chr4_1:59311891-59311910 Msa0560060:intron 50.0%
GGTTGGGATTGAAGGAAGGT+TGG - chr4_1:59301938-59301957 Msa0560060:three_prime_UTR 50.0%
AGGAAGGTTGGGAAGTGAAG+TGG - chr4_1:59311911-59311930 Msa0560060:intron 50.0%
GTAGGAAGACTTGGAAGTGG+TGG - chr4_1:59311981-59312000 Msa0560060:intron 50.0%
GAAGGGATAGTAGGCAATGG+AGG - chr4_1:59302062-59302081 Msa0560060:three_prime_UTR 50.0%
GCAATAGATGGCGAGCTTCT+AGG - chr4_1:59312147-59312166 Msa0560060:intron 50.0%
!! GAAGGTGGTGGGGAGAGAAA+TGG - chr4_1:59301900-59301919 Msa0560060:three_prime_UTR 55.0%
TGGTGGGGAGAGAAATGGGA+AGG - chr4_1:59301905-59301924 Msa0560060:three_prime_UTR 55.0%
TGGGGAGAGAAATGGGAAGG+AGG - chr4_1:59301908-59301927 Msa0560060:three_prime_UTR 55.0%
GGGGAGAGAAATGGGAAGGA+GGG - chr4_1:59301909-59301928 Msa0560060:three_prime_UTR 55.0%
GGGAAGGAGGGAAAAGTGGT+TGG - chr4_1:59301921-59301940 Msa0560060:three_prime_UTR 55.0%
AGTGAAGTGGCTGCTGGCAA+TGG - chr4_1:59301963-59301982 Msa0560060:three_prime_UTR 55.0%
AGTGAAGTGGCTGCTGGCAA+TGG + chr4_1:59301963-59301982 None:intergenic 55.0%
TTGGGAAGTGAAGTGGCTGC+TGG + chr4_1:59311918-59311937 None:intergenic 55.0%
GGGCTAGATGTTGAAGGTGG+TGG + chr4_1:59303733-59303752 None:intergenic 55.0%
GCCAGTTGCATTCCCTTCAC+GGG - chr4_1:59306231-59306250 Msa0560060:intron 55.0%
!! GAGGAGAGGTGCTGGTAACT+TGG + chr4_1:59306311-59306330 None:intergenic 55.0%
AAGCTGCACTGGGTAGTTCC+AGG + chr4_1:59306333-59306352 None:intergenic 55.0%
ATCTGCCCTTACACCACCAG+CGG - chr4_1:59306369-59306388 Msa0560060:intron 55.0%
!! GTGCTACTGGTGCTGCATCT+GGG + chr4_1:59306438-59306457 None:intergenic 55.0%
!! AGTGCTACTGGTGCTGCATC+TGG + chr4_1:59306439-59306458 None:intergenic 55.0%
!! AGACCTAGGAGGAGTGCTAC+TGG + chr4_1:59306451-59306470 None:intergenic 55.0%
CTAGTGGTAGGGGAGCTGTT+GGG + chr4_1:59306474-59306493 None:intergenic 55.0%
GTAAGAGCAGAGGGGTGAAG+AGG + chr4_1:59306543-59306562 None:intergenic 55.0%
!! TGGTGCTGGTAAGAGCAGAG+GGG + chr4_1:59306551-59306570 None:intergenic 55.0%
!! GTGGTGCTGGTAAGAGCAGA+GGG + chr4_1:59306552-59306571 None:intergenic 55.0%
! GATGATGGTGATTGGAGGGG+TGG + chr4_1:59306571-59306590 None:intergenic 55.0%
TTGTCGGAGGGGGTTTCATG+CGG + chr4_1:59306839-59306858 None:intergenic 55.0%
! ACGGTGTCAGAGTTGTCGGA+GGG + chr4_1:59306851-59306870 None:intergenic 55.0%
! TACGGTGTCAGAGTTGTCGG+AGG + chr4_1:59306852-59306871 None:intergenic 55.0%
CCGACAACTCTGACACCGTA+AGG - chr4_1:59306852-59306871 Msa0560060:intron 55.0%
! AACAGCGAGTGCTGCCGAAA+CGG + chr4_1:59306956-59306975 None:intergenic 55.0%
ACAGAATCGGAACCCTAGCG+AGG + chr4_1:59307004-59307023 None:intergenic 55.0%
GGGTTCCGATTCTGTCGAGA+CGG - chr4_1:59307009-59307028 Msa0560060:intron 55.0%
CGACACCGTCTCGACAGAAT+CGG + chr4_1:59307017-59307036 None:intergenic 55.0%
CGATTCTGTCGAGACGGTGT+CGG - chr4_1:59307015-59307034 Msa0560060:intron 55.0%
TCTAGATCGAGGGATGGCAC+TGG + chr4_1:59307057-59307076 None:intergenic 55.0%
GCTGATACTGATGACCCGGT+TGG - chr4_1:59307136-59307155 Msa0560060:intron 55.0%
! AACAAGGGAGAAAGCGTGGC+CGG - chr4_1:59307260-59307279 Msa0560060:intron 55.0%
CGGAACCCATTCGCTTTCTC+CGG + chr4_1:59307282-59307301 None:intergenic 55.0%
GGTTCCGATTAGGGTCAAGG+AGG - chr4_1:59307295-59307314 Msa0560060:intron 55.0%
GGTCAAGGAGGAGAGCAAGT+CGG - chr4_1:59307307-59307326 Msa0560060:intron 55.0%
!! GGCGATACTGATTCGCGATG+TGG - chr4_1:59307328-59307347 Msa0560060:intron 55.0%
!! AGCTCAGAGGCGTCGAAAGT+TGG - chr4_1:59307459-59307478 Msa0560060:intron 55.0%
!! GCTCAGAGGCGTCGAAAGTT+GGG - chr4_1:59307460-59307479 Msa0560060:intron 55.0%
TTGGGTCAGATTCTCGGGCA+CGG - chr4_1:59307478-59307497 Msa0560060:intron 55.0%
CGTGCAGATCACGTGCACTT+AGG - chr4_1:59307520-59307539 Msa0560060:intron 55.0%
ACAGAGCTGAAGCTGAACGG+TGG + chr4_1:59307566-59307585 None:intergenic 55.0%
ATTCACCACCACCACCGCTA+TGG + chr4_1:59307598-59307617 None:intergenic 55.0%
TGTCAGTTGACAGTGGCGAG+AGG - chr4_1:59307666-59307685 Msa0560060:intron 55.0%
CCTTTAACATGCCTCCGGGA+GGG - chr4_1:59307860-59307879 Msa0560060:intron 55.0%
CTTTAACATGCCTCCGGGAG+GGG - chr4_1:59307861-59307880 Msa0560060:intron 55.0%
GCAGAGCTCCTCAATCTCAC+CGG + chr4_1:59309095-59309114 None:intergenic 55.0%
GACAAATGCGTTCTTCCGCC+AGG + chr4_1:59309251-59309270 None:intergenic 55.0%
ACCGTTCCTTCCGTTTGTGG+TGG - chr4_1:59309303-59309322 Msa0560060:intron 55.0%
AGTAAAATTTGGGGGGGGGG+GGG + chr4_1:59310104-59310123 None:intergenic 55.0%
GAGTAAAATTTGGGGGGGGG+GGG + chr4_1:59310105-59310124 None:intergenic 55.0%
CCGTCCTACTTGACAGCTCT+TGG - chr4_1:59311217-59311236 Msa0560060:intron 55.0%
GCTGCCAAGAGCTGTCAAGT+AGG + chr4_1:59311224-59311243 None:intergenic 55.0%
TTGACAGCTCTTGGCAGCTC+CGG - chr4_1:59311226-59311245 Msa0560060:intron 55.0%
GGGCTAGAAGTTGAAGGTGG+TGG - chr4_1:59311849-59311868 Msa0560060:intron 55.0%
GGAAGGAGGGGAAAGTGGTT+GGG - chr4_1:59311883-59311902 Msa0560060:intron 55.0%
TTGGGAAGTGAAGTGGCTGC+TGG - chr4_1:59311918-59311937 Msa0560060:intron 55.0%
AGTGAAGTGGCTGCTGGCAA+TGG - chr4_1:59301963-59301982 Msa0560060:three_prime_UTR 55.0%
GAAGTGGCTGCTGGCAATGG+TGG - chr4_1:59301966-59301985 Msa0560060:three_prime_UTR 60.0%
GAAGTGGCTGCTGGCAATGG+TGG + chr4_1:59301966-59301985 None:intergenic 60.0%
GGGAAGGAGGGGAAAGTGGT+TGG + chr4_1:59311882-59311901 None:intergenic 60.0%
GCCCGTGAAGGGAATGCAAC+TGG + chr4_1:59306235-59306254 None:intergenic 60.0%
GTTACCAGCACCTCTCCTCC+TGG - chr4_1:59306312-59306331 Msa0560060:intron 60.0%
! AGTTCCAGGAGGAGAGGTGC+TGG + chr4_1:59306319-59306338 None:intergenic 60.0%
CTGGGTAGTTCCAGGAGGAG+AGG + chr4_1:59306325-59306344 None:intergenic 60.0%
CTGCACTGGGTAGTTCCAGG+AGG + chr4_1:59306330-59306349 None:intergenic 60.0%
GCACCAGTAGCACTCCTCCT+AGG - chr4_1:59306445-59306464 Msa0560060:intron 60.0%
GAGCTGTTGGGAGACCTAGG+AGG + chr4_1:59306462-59306481 None:intergenic 60.0%
GCTAGTGGTAGGGGAGCTGT+TGG + chr4_1:59306475-59306494 None:intergenic 60.0%
CAGAGGGGTGAAGAGGTCAG+GGG + chr4_1:59306536-59306555 None:intergenic 60.0%
GCAGAGGGGTGAAGAGGTCA+GGG + chr4_1:59306537-59306556 None:intergenic 60.0%
AGCAGAGGGGTGAAGAGGTC+AGG + chr4_1:59306538-59306557 None:intergenic 60.0%
!! GGTGGTGCTGGTAAGAGCAG+AGG + chr4_1:59306553-59306572 None:intergenic 60.0%
GGTGGTGATACGTTCACCGC+AGG + chr4_1:59306818-59306837 None:intergenic 60.0%
GGTGTCAGAGTTGTCGGAGG+GGG + chr4_1:59306849-59306868 None:intergenic 60.0%
! CGGTGTCAGAGTTGTCGGAG+GGG + chr4_1:59306850-59306869 None:intergenic 60.0%
TGGTCTCACCTGCCTCGCTA+GGG - chr4_1:59306989-59307008 Msa0560060:intron 60.0%
AATCGGAACCCTAGCGAGGC+AGG + chr4_1:59307000-59307019 None:intergenic 60.0%
CACAGCCAAATCCAACGCCG+AGG + chr4_1:59307086-59307105 None:intergenic 60.0%
! CTCGGCGTTGGATTTGGCTG+TGG - chr4_1:59307084-59307103 Msa0560060:intron 60.0%
! GGCGTTGGATTTGGCTGTGG+AGG - chr4_1:59307087-59307106 Msa0560060:intron 60.0%
CGTGGCCGGAGAAAGCGAAT+GGG - chr4_1:59307274-59307293 Msa0560060:intron 60.0%
CGCGATGTGGTCGATGTTGG+TGG - chr4_1:59307341-59307360 Msa0560060:intron 60.0%
TGATCCGAGATTCTCCGGCG+AGG - chr4_1:59307412-59307431 Msa0560060:intron 60.0%
CTCTCCTCGCCGGAGAATCT+CGG + chr4_1:59307419-59307438 None:intergenic 60.0%
GTCATCGACACTCTCCTCGC+CGG + chr4_1:59307429-59307448 None:intergenic 60.0%
GTTTCCACCCTCCATAGCGG+TGG - chr4_1:59307584-59307603 Msa0560060:intron 60.0%
ACCACCACCACCGCTATGGA+GGG + chr4_1:59307594-59307613 None:intergenic 60.0%
GTTGACAGTGGCGAGAGGAG+AGG - chr4_1:59307671-59307690 Msa0560060:intron 60.0%
GCCTTTAACATGCCTCCGGG+AGG - chr4_1:59307859-59307878 Msa0560060:intron 60.0%
! CCCTCCCGGAGGCATGTTAA+AGG + chr4_1:59307863-59307882 None:intergenic 60.0%
GTATTTCACTCCCCTCCCGG+AGG + chr4_1:59307874-59307893 None:intergenic 60.0%
TAAAATTTGGGGGGGGGGGG+GGG + chr4_1:59310102-59310121 None:intergenic 60.0%
GTAAAATTTGGGGGGGGGGG+GGG + chr4_1:59310103-59310122 None:intergenic 60.0%
GGGAAGGAGGGGAAAGTGGT+TGG - chr4_1:59311882-59311901 Msa0560060:intron 60.0%
GAAGTGGCTGCTGGCAATGG+TGG - chr4_1:59301966-59301985 Msa0560060:three_prime_UTR 60.0%
GTGGAGTGCGTGCCCGTGAA+GGG + chr4_1:59306246-59306265 None:intergenic 65.0%
CTTCACGGGCACGCACTCCA+CGG - chr4_1:59306245-59306264 Msa0560060:intron 65.0%
TTCACGGGCACGCACTCCAC+GGG - chr4_1:59306246-59306265 Msa0560060:intron 65.0%
GATGTAGAGGAGCCGTCCCG+TGG + chr4_1:59306265-59306284 None:intergenic 65.0%
! CGCTGCCGCTGGTGGTGTAA+GGG + chr4_1:59306377-59306396 None:intergenic 65.0%
CCTTACACCACCAGCGGCAG+CGG - chr4_1:59306375-59306394 Msa0560060:intron 65.0%
GGGGAGCTGTTGGGAGACCT+AGG + chr4_1:59306465-59306484 None:intergenic 65.0%
GGTGATTGGAGGGGTGGTGC+TGG + chr4_1:59306565-59306584 None:intergenic 65.0%
TCGGAGGGGGTTTCATGCGG+TGG + chr4_1:59306836-59306855 None:intergenic 65.0%
! GCGAGTGCTGCCGAAACGGA+AGG + chr4_1:59306952-59306971 None:intergenic 65.0%
GCGAGGCAGGTGAGACCACT+CGG + chr4_1:59306987-59307006 None:intergenic 65.0%
GTGGTCTCACCTGCCTCGCT+AGG - chr4_1:59306988-59307007 Msa0560060:intron 65.0%
!! CTGTCGAGACGGTGTCGGCT+CGG - chr4_1:59307020-59307039 Msa0560060:intron 65.0%
TGATGACCCGGTTGGGGCTG+AGG - chr4_1:59307144-59307163 Msa0560060:intron 65.0%
GCGTGGCCGGAGAAAGCGAA+TGG - chr4_1:59307273-59307292 Msa0560060:intron 65.0%
TTCTCGGGCACGGATCGCGA+AGG - chr4_1:59307488-59307507 Msa0560060:intron 65.0%
TCCACCCTCCATAGCGGTGG+TGG - chr4_1:59307587-59307606 Msa0560060:intron 65.0%
ACCACCACCGCTATGGAGGG+TGG + chr4_1:59307591-59307610 None:intergenic 65.0%
! ACCCTCCATAGCGGTGGTGG+TGG - chr4_1:59307590-59307609 Msa0560060:intron 65.0%
CACCACCACCACCGCTATGG+AGG + chr4_1:59307595-59307614 None:intergenic 65.0%
CAGTGGCGAGAGGAGAGGAG+AGG - chr4_1:59307676-59307695 Msa0560060:intron 65.0%
CCACGAAGCCAAAGGCCCCA+CGG + chr4_1:59309132-59309151 None:intergenic 65.0%
! CTGGGCTTGCTCAACACCCC+TGG - chr4_1:59310015-59310034 Msa0560060:intron 65.0%
AAAATTTGGGGGGGGGGGGG+GGG + chr4_1:59310101-59310120 None:intergenic 65.0%
CGTGGAGTGCGTGCCCGTGA+AGG + chr4_1:59306247-59306266 None:intergenic 70.0%
! CCGCTGCCGCTGGTGGTGTA+AGG + chr4_1:59306378-59306397 None:intergenic 70.0%
CGCTGTTCGCGTCTGCCGAG+TGG - chr4_1:59306969-59306988 Msa0560060:intron 70.0%
!! TCGAGACGGTGTCGGCTCGG+TGG - chr4_1:59307023-59307042 Msa0560060:intron 70.0%
!! AGACGGTGTCGGCTCGGTGG+CGG - chr4_1:59307026-59307045 Msa0560060:intron 70.0%
GGCTGTGGAGGCTGCTGCAG+TGG - chr4_1:59307099-59307118 Msa0560060:intron 70.0%
GGAGGCTGCTGCAGTGGCTG+CGG - chr4_1:59307105-59307124 Msa0560060:intron 70.0%
TGCTGCAGTGGCTGCGGAGG+AGG - chr4_1:59307111-59307130 Msa0560060:intron 70.0%
CCACAGCCTCAGCCCCAACC+GGG + chr4_1:59307153-59307172 None:intergenic 70.0%
GCCACAGCCTCAGCCCCAAC+CGG + chr4_1:59307154-59307173 None:intergenic 70.0%
GGTTGGGGCTGAGGCTGTGG+CGG - chr4_1:59307153-59307172 Msa0560060:intron 70.0%
! GGCTGAGGCTGTGGCGGAAC+CGG - chr4_1:59307159-59307178 Msa0560060:intron 70.0%
! TGAGGCTGTGGCGGAACCGG+TGG - chr4_1:59307162-59307181 Msa0560060:intron 70.0%
TGCTTACGGCGTCACCGCCG+TGG - chr4_1:59309112-59309131 Msa0560060:intron 70.0%
GCTTACGGCGTCACCGCCGT+GGG - chr4_1:59309113-59309132 Msa0560060:intron 70.0%
CTTACGGCGTCACCGCCGTG+GGG - chr4_1:59309114-59309133 Msa0560060:intron 70.0%
CGAAGCCAAAGGCCCCACGG+CGG + chr4_1:59309129-59309148 None:intergenic 70.0%
! CCGTGGGGCCTTTGGCTTCG+TGG - chr4_1:59309129-59309148 Msa0560060:intron 70.0%
AAATTTGGGGGGGGGGGGGG+GGG + chr4_1:59310100-59310119 None:intergenic 70.0%
CGGGCACGCACTCCACGGGA+CGG - chr4_1:59306250-59306269 Msa0560060:intron 75.0%
ACCACCAGCGGCAGCGGCAG+CGG - chr4_1:59306381-59306400 Msa0560060:intron 75.0%
GGCTGCTGCAGTGGCTGCGG+AGG - chr4_1:59307108-59307127 Msa0560060:intron 75.0%
CCCGGTTGGGGCTGAGGCTG+TGG - chr4_1:59307150-59307169 Msa0560060:intron 75.0%
CGTCACCGCCGTGGGGCCTT+TGG - chr4_1:59309121-59309140 Msa0560060:intron 75.0%
AATTTGGGGGGGGGGGGGGG+GGG + chr4_1:59310099-59310118 None:intergenic 75.0%
! GATGCCGCTGCCGCTGCCGC+TGG + chr4_1:59306388-59306407 None:intergenic 80.0%
!!! CGGTGTCGGCTCGGTGGCGG+TGG - chr4_1:59307029-59307048 Msa0560060:intron 80.0%
! ATTTGGGGGGGGGGGGGGGG+GGG + chr4_1:59310098-59310117 None:intergenic 80.0%
! GCCGCTGCCGCTGCCGCTGG+TGG + chr4_1:59306385-59306404 None:intergenic 85.0%
! TTTGGGGGGGGGGGGGGGGG+GGG + chr4_1:59310097-59310116 None:intergenic 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG + chr4_1:59310096-59310115 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59301891 59312427 59301891 ID=Msa0560060;Name=Msa0560060
chr4_1 mRNA 59301891 59312427 59301891 ID=Msa0560060-mRNA-1;Parent=Msa0560060;Name=Msa0560060-mRNA-1;_AED=0.25;_eAED=0.41;_QI=0|0|0.5|1|0|0|2|369|117
chr4_1 exon 59301891 59302453 59301891 ID=Msa0560060-mRNA-1:exon:18317;Parent=Msa0560060-mRNA-1
chr4_1 exon 59312268 59312427 59312268 ID=Msa0560060-mRNA-1:exon:18316;Parent=Msa0560060-mRNA-1
chr4_1 CDS 59312268 59312427 59312268 ID=Msa0560060-mRNA-1:cds;Parent=Msa0560060-mRNA-1
chr4_1 CDS 59302260 59302453 59302260 ID=Msa0560060-mRNA-1:cds;Parent=Msa0560060-mRNA-1
chr4_1 three_prime_UTR 59301891 59302259 59301891 ID=Msa0560060-mRNA-1:three_prime_utr;Parent=Msa0560060-mRNA-1
Gene Sequence

>Msa0560060

CTAGAGGTTGAAGGTGGTGGGGAGAGAAATGGGAAGGAGGGAAAAGTGGTTGGGATTGAAGGAAGGTTTGGAAGTGAAGTGGCTGCTGGCAATGGTGGAATGTTGAGAGATGGAAGTGTTGGAATTGTTGTAGGAAAGCTTGGAAGTGGTGGCATAGTGAGTGGTGGGGAAAAAAATGGGAAGGAGGGGAAAGTGGTTGGGATTGAAGGAAGGTTGGGAAGTGAAGTGGCTGCTGGCAATGGTGGAATGTTGAGAGATGGAATTGTTGGAATATTGGTAGGAAGACTTGGAAGTGGTGGCATAGTGAGTTTAGGCATAGAAGGGATAGTAGGCAATGGAGGAAGATTTCCTTGA
Protein sequence

>Msa0560060

LEVEGGGERNGKEGKVVGIEGRFGSEVAAGNGGMLRDGSVGIVVGKLGSGGIVSGGEKNGKEGKVVGIEGRLGSEVAAGNGGMLRDGIVGILVGRLGSGGIVSLGIEGIVGNGGRFP*