Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028980 | Msa0082520 | 0.895088 | 1.334977e-75 | -8.615850e-47 |
| Msa0028980 | Msa0127150 | 0.898710 | 4.064620e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028980 | MtrunA17_Chr1g0185611 | 74.747 | 198 | 13 | 3 | 1 | 167 | 1 | 192 | 1.88e-98 | 282 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCCACGGTTCGCAAGTTT+TGG | 0.289674 | 1_1:-54102221 | None:intergenic |
| TTGTTTACCCTCTTATGTTC+TGG | 0.328861 | 1_1:+54101869 | Msa0028980:CDS |
| CTACTAGCTAGCTCTTCATT+TGG | 0.355880 | 1_1:+54103246 | Msa0028980:three_prime_UTR |
| AGCTAGTAAGTCCATTCCTT+TGG | 0.376321 | 1_1:-54103225 | None:intergenic |
| TACTAGCTAGCTCTTCATTT+GGG | 0.381351 | 1_1:+54103247 | Msa0028980:three_prime_UTR |
| CAGCAGCATCACAAATCATT+TGG | 0.391782 | 1_1:+54102045 | Msa0028980:CDS |
| GCGAACCGTGGCATTGGAAA+TGG | 0.411841 | 1_1:+54102230 | Msa0028980:CDS |
| AGCCATGGATCGTGCGGTAC+TGG | 0.416792 | 1_1:+54102278 | Msa0028980:CDS |
| GGTGATGATGCAATATTTGT+TGG | 0.419116 | 1_1:-54102020 | None:intergenic |
| AACTTCGTGTCTGCTCTTTG+AGG | 0.441594 | 1_1:-54102311 | None:intergenic |
| GCTCATGATGATTGTGAAGT+TGG | 0.449922 | 1_1:+54101828 | Msa0028980:CDS |
| TACCTCGTCCAGAACATAAG+AGG | 0.467252 | 1_1:-54101877 | None:intergenic |
| AAACTTGCGAACCGTGGCAT+TGG | 0.469865 | 1_1:+54102224 | Msa0028980:CDS |
| GGATATTTCTTCCAAAGGAA+TGG | 0.492493 | 1_1:+54103214 | Msa0028980:CDS |
| CAGCACTCAAAATCCATGTC+AGG | 0.506647 | 1_1:+54102182 | Msa0028980:intron |
| CGCCAGTACCGCACGATCCA+TGG | 0.512478 | 1_1:-54102280 | None:intergenic |
| GTGTGCCCTTCACCACGTCT+AGG | 0.518711 | 1_1:-54103108 | None:intergenic |
| ATGATTTGTGATGCTGCTGC+TGG | 0.519374 | 1_1:-54102041 | None:intergenic |
| TCAAGGGATATTTCTTCCAA+AGG | 0.525267 | 1_1:+54103209 | Msa0028980:CDS |
| TCTCAGAATCAATGTTCTCA+AGG | 0.529569 | 1_1:+54103192 | Msa0028980:CDS |
| TACAAACCTAGACGTGGTGA+AGG | 0.550393 | 1_1:+54103102 | Msa0028980:CDS |
| TTGAGAGGGACACAAATTGA+AGG | 0.551770 | 1_1:+54103289 | Msa0028980:three_prime_UTR |
| AGAGAACAATTATATTTGAG+AGG | 0.558837 | 1_1:+54103274 | Msa0028980:three_prime_UTR |
| ATGTAGTATGCATAAAAGCT+AGG | 0.568939 | 1_1:+54103359 | Msa0028980:three_prime_UTR |
| ACCCTCTTATGTTCTGGACG+AGG | 0.572361 | 1_1:+54101875 | Msa0028980:CDS |
| GCATTCCATTTCCAATGCCA+CGG | 0.577091 | 1_1:-54102235 | None:intergenic |
| ATGAGCAATAGTAGTGGCCA+TGG | 0.578077 | 1_1:-54101811 | None:intergenic |
| ATTTGGAGAATCACAATCAC+AGG | 0.578607 | 1_1:+54102062 | Msa0028980:CDS |
| GAGAACAATTATATTTGAGA+GGG | 0.581812 | 1_1:+54103275 | Msa0028980:three_prime_UTR |
| CTCAGAATCAATGTTCTCAA+GGG | 0.590442 | 1_1:+54103193 | Msa0028980:CDS |
| ACCTCGTCCAGAACATAAGA+GGG | 0.644914 | 1_1:-54101876 | None:intergenic |
| ACAAACCTAGACGTGGTGAA+GGG | 0.647783 | 1_1:+54103103 | Msa0028980:CDS |
| TTGGTACAAAGATCCTGACA+TGG | 0.656996 | 1_1:-54102195 | None:intergenic |
| AAGCCAAAACTTGCGAACCG+TGG | 0.669362 | 1_1:+54102218 | Msa0028980:CDS |
| ATCATCATGAGCAATAGTAG+TGG | 0.670643 | 1_1:-54101817 | None:intergenic |
| GAATCAAGCCATGGATCGTG+CGG | 0.670771 | 1_1:+54102272 | Msa0028980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAAATTTTAAATAGG+AGG | - | chr1_1:54102119-54102138 | None:intergenic | 10.0% |
| !!! | AAAATAAAATTTTAAATAGG+AGG | - | chr1_1:54102119-54102138 | None:intergenic | 10.0% |
| !! | ATATATAATTTCCTTTCTTT+AGG | + | chr1_1:54101963-54101982 | Msa0028980:intron | 15.0% |
| !!! | TTGATCATTTTTGAAAAAAT+TGG | + | chr1_1:54102369-54102388 | Msa0028980:intron | 15.0% |
| !! | TTAGTTAGAATTTCAAAAAA+TGG | + | chr1_1:54103001-54103020 | Msa0028980:intron | 15.0% |
| !! | AATTATCTTTATAGACTTAA+GGG | - | chr1_1:54103049-54103068 | None:intergenic | 15.0% |
| !! | ATATATAATTTCCTTTCTTT+AGG | + | chr1_1:54101963-54101982 | Msa0028980:intron | 15.0% |
| !!! | TTGATCATTTTTGAAAAAAT+TGG | + | chr1_1:54102369-54102388 | Msa0028980:intron | 15.0% |
| !! | TTAGTTAGAATTTCAAAAAA+TGG | + | chr1_1:54103001-54103020 | Msa0028980:intron | 15.0% |
| !! | AATTATCTTTATAGACTTAA+GGG | - | chr1_1:54103049-54103068 | None:intergenic | 15.0% |
| !! | CAATTATCTTTATAGACTTA+AGG | - | chr1_1:54103050-54103069 | None:intergenic | 20.0% |
| !! | CAATTATCTTTATAGACTTA+AGG | - | chr1_1:54103050-54103069 | None:intergenic | 20.0% |
| ! | TTCATCAAATGTTAGCTATT+AGG | + | chr1_1:54101916-54101935 | Msa0028980:intron | 25.0% |
| ! | TTTCATACATACCTAAAGAA+AGG | - | chr1_1:54101977-54101996 | None:intergenic | 25.0% |
| !!! | ATATTTTTAGAATCAAGCCA+TGG | + | chr1_1:54102263-54102282 | Msa0028980:CDS | 25.0% |
| ! | ATTGGAAGTTAATTCTTACA+TGG | + | chr1_1:54102387-54102406 | Msa0028980:intron | 25.0% |
| ! | ATTACATCACATAGTTACTA+TGG | + | chr1_1:54102465-54102484 | Msa0028980:intron | 25.0% |
| ! | AATATTAATGTGCATGCATT+AGG | + | chr1_1:54102887-54102906 | Msa0028980:intron | 25.0% |
| ! | AAGAAAAAAGATCAGAAAGA+TGG | + | chr1_1:54103147-54103166 | Msa0028980:CDS | 25.0% |
| ! | AGAGAACAATTATATTTGAG+AGG | + | chr1_1:54103274-54103293 | Msa0028980:three_prime_UTR | 25.0% |
| ! | GAGAACAATTATATTTGAGA+GGG | + | chr1_1:54103275-54103294 | Msa0028980:three_prime_UTR | 25.0% |
| ! | TTCATCAAATGTTAGCTATT+AGG | + | chr1_1:54101916-54101935 | Msa0028980:intron | 25.0% |
| ! | TTTCATACATACCTAAAGAA+AGG | - | chr1_1:54101977-54101996 | None:intergenic | 25.0% |
| !!! | ATATTTTTAGAATCAAGCCA+TGG | + | chr1_1:54102263-54102282 | Msa0028980:CDS | 25.0% |
| ! | ATTGGAAGTTAATTCTTACA+TGG | + | chr1_1:54102387-54102406 | Msa0028980:intron | 25.0% |
| ! | ATTACATCACATAGTTACTA+TGG | + | chr1_1:54102465-54102484 | Msa0028980:intron | 25.0% |
| ! | AATATTAATGTGCATGCATT+AGG | + | chr1_1:54102887-54102906 | Msa0028980:intron | 25.0% |
| ! | AAGAAAAAAGATCAGAAAGA+TGG | + | chr1_1:54103147-54103166 | Msa0028980:CDS | 25.0% |
| ! | AGAGAACAATTATATTTGAG+AGG | + | chr1_1:54103274-54103293 | Msa0028980:three_prime_UTR | 25.0% |
| ! | GAGAACAATTATATTTGAGA+GGG | + | chr1_1:54103275-54103294 | Msa0028980:three_prime_UTR | 25.0% |
| TATGAAAAACCAACACCAAA+AGG | + | chr1_1:54101990-54102009 | Msa0028980:CDS | 30.0% | |
| !!! | TTTGTTGGTTTTGAACCTTT+TGG | - | chr1_1:54102008-54102027 | None:intergenic | 30.0% |
| !! | AATCACAGGTACTGTTTTAT+CGG | + | chr1_1:54102076-54102095 | Msa0028980:intron | 30.0% |
| !! | CTCAATCGTTGATTTAAAAC+TGG | - | chr1_1:54102521-54102540 | None:intergenic | 30.0% |
| ! | TTTTCTGTCGTAGTTAATCT+CGG | - | chr1_1:54102603-54102622 | None:intergenic | 30.0% |
| TGAATAATTGTGCGTATGTT+TGG | + | chr1_1:54102700-54102719 | Msa0028980:intron | 30.0% | |
| ! | TATTTAGAGCTTGAACAACT+CGG | - | chr1_1:54102871-54102890 | None:intergenic | 30.0% |
| AATTGACATGTCCTTTCATT+TGG | + | chr1_1:54103065-54103084 | Msa0028980:intron | 30.0% | |
| ! | AGCTTTTATGCATACTACAT+AGG | - | chr1_1:54103359-54103378 | None:intergenic | 30.0% |
| ATGTAGTATGCATAAAAGCT+AGG | + | chr1_1:54103359-54103378 | Msa0028980:three_prime_UTR | 30.0% | |
| TATGAAAAACCAACACCAAA+AGG | + | chr1_1:54101990-54102009 | Msa0028980:CDS | 30.0% | |
| !!! | TTTGTTGGTTTTGAACCTTT+TGG | - | chr1_1:54102008-54102027 | None:intergenic | 30.0% |
| !! | AATCACAGGTACTGTTTTAT+CGG | + | chr1_1:54102076-54102095 | Msa0028980:intron | 30.0% |
| !! | CTCAATCGTTGATTTAAAAC+TGG | - | chr1_1:54102521-54102540 | None:intergenic | 30.0% |
| ! | TTTTCTGTCGTAGTTAATCT+CGG | - | chr1_1:54102603-54102622 | None:intergenic | 30.0% |
| TGAATAATTGTGCGTATGTT+TGG | + | chr1_1:54102700-54102719 | Msa0028980:intron | 30.0% | |
| ! | TATTTAGAGCTTGAACAACT+CGG | - | chr1_1:54102871-54102890 | None:intergenic | 30.0% |
| AATTGACATGTCCTTTCATT+TGG | + | chr1_1:54103065-54103084 | Msa0028980:intron | 30.0% | |
| ! | AGCTTTTATGCATACTACAT+AGG | - | chr1_1:54103359-54103378 | None:intergenic | 30.0% |
| ATGTAGTATGCATAAAAGCT+AGG | + | chr1_1:54103359-54103378 | Msa0028980:three_prime_UTR | 30.0% | |
| ATCATCATGAGCAATAGTAG+TGG | - | chr1_1:54101820-54101839 | None:intergenic | 35.0% | |
| !!! | TGTGAAGTTGGTTTTGAAGA+AGG | + | chr1_1:54101840-54101859 | Msa0028980:CDS | 35.0% |
| TTGTTTACCCTCTTATGTTC+TGG | + | chr1_1:54101869-54101888 | Msa0028980:CDS | 35.0% | |
| ! | GGTGATGATGCAATATTTGT+TGG | - | chr1_1:54102023-54102042 | None:intergenic | 35.0% |
| ATTTGGAGAATCACAATCAC+AGG | + | chr1_1:54102062-54102081 | Msa0028980:CDS | 35.0% | |
| !!! | TATCAACCTGGCTTTTTTCT+TGG | - | chr1_1:54102341-54102360 | None:intergenic | 35.0% |
| TCAAGCAACATATATCAACC+TGG | - | chr1_1:54102353-54102372 | None:intergenic | 35.0% | |
| !! | TCGTTGATTTAAAACTGGAC+TGG | - | chr1_1:54102516-54102535 | None:intergenic | 35.0% |
| GCATTGGAACGTGAAAAAAT+TGG | - | chr1_1:54102739-54102758 | None:intergenic | 35.0% | |
| AAATCGCGAAAATGTTGCAT+TGG | - | chr1_1:54102755-54102774 | None:intergenic | 35.0% | |
| ! | ATTTAGAGCTTGAACAACTC+GGG | - | chr1_1:54102870-54102889 | None:intergenic | 35.0% |
| TTGAACTGCAACCAAATGAA+AGG | - | chr1_1:54103079-54103098 | None:intergenic | 35.0% | |
| CAAAAATACAAACCTAGACG+TGG | + | chr1_1:54103096-54103115 | Msa0028980:CDS | 35.0% | |
| TCTCAGAATCAATGTTCTCA+AGG | + | chr1_1:54103192-54103211 | Msa0028980:CDS | 35.0% | |
| CTCAGAATCAATGTTCTCAA+GGG | + | chr1_1:54103193-54103212 | Msa0028980:CDS | 35.0% | |
| TCAAGGGATATTTCTTCCAA+AGG | + | chr1_1:54103209-54103228 | Msa0028980:CDS | 35.0% | |
| GGATATTTCTTCCAAAGGAA+TGG | + | chr1_1:54103214-54103233 | Msa0028980:CDS | 35.0% | |
| ! | TACTAGCTAGCTCTTCATTT+GGG | + | chr1_1:54103247-54103266 | Msa0028980:three_prime_UTR | 35.0% |
| ATCATCATGAGCAATAGTAG+TGG | - | chr1_1:54101820-54101839 | None:intergenic | 35.0% | |
| !!! | TGTGAAGTTGGTTTTGAAGA+AGG | + | chr1_1:54101840-54101859 | Msa0028980:CDS | 35.0% |
| TTGTTTACCCTCTTATGTTC+TGG | + | chr1_1:54101869-54101888 | Msa0028980:CDS | 35.0% | |
| ! | GGTGATGATGCAATATTTGT+TGG | - | chr1_1:54102023-54102042 | None:intergenic | 35.0% |
| ATTTGGAGAATCACAATCAC+AGG | + | chr1_1:54102062-54102081 | Msa0028980:CDS | 35.0% | |
| !!! | TATCAACCTGGCTTTTTTCT+TGG | - | chr1_1:54102341-54102360 | None:intergenic | 35.0% |
| TCAAGCAACATATATCAACC+TGG | - | chr1_1:54102353-54102372 | None:intergenic | 35.0% | |
| !! | TCGTTGATTTAAAACTGGAC+TGG | - | chr1_1:54102516-54102535 | None:intergenic | 35.0% |
| GCATTGGAACGTGAAAAAAT+TGG | - | chr1_1:54102739-54102758 | None:intergenic | 35.0% | |
| AAATCGCGAAAATGTTGCAT+TGG | - | chr1_1:54102755-54102774 | None:intergenic | 35.0% | |
| ! | ATTTAGAGCTTGAACAACTC+GGG | - | chr1_1:54102870-54102889 | None:intergenic | 35.0% |
| TTGAACTGCAACCAAATGAA+AGG | - | chr1_1:54103079-54103098 | None:intergenic | 35.0% | |
| CAAAAATACAAACCTAGACG+TGG | + | chr1_1:54103096-54103115 | Msa0028980:CDS | 35.0% | |
| TCTCAGAATCAATGTTCTCA+AGG | + | chr1_1:54103192-54103211 | Msa0028980:CDS | 35.0% | |
| CTCAGAATCAATGTTCTCAA+GGG | + | chr1_1:54103193-54103212 | Msa0028980:CDS | 35.0% | |
| TCAAGGGATATTTCTTCCAA+AGG | + | chr1_1:54103209-54103228 | Msa0028980:CDS | 35.0% | |
| GGATATTTCTTCCAAAGGAA+TGG | + | chr1_1:54103214-54103233 | Msa0028980:CDS | 35.0% | |
| ! | TACTAGCTAGCTCTTCATTT+GGG | + | chr1_1:54103247-54103266 | Msa0028980:three_prime_UTR | 35.0% |
| GCTCATGATGATTGTGAAGT+TGG | + | chr1_1:54101828-54101847 | Msa0028980:CDS | 40.0% | |
| !!! | GGTTTTGAACCTTTTGGTGT+TGG | - | chr1_1:54102002-54102021 | None:intergenic | 40.0% |
| CAGCAGCATCACAAATCATT+TGG | + | chr1_1:54102045-54102064 | Msa0028980:CDS | 40.0% | |
| TTGGTACAAAGATCCTGACA+TGG | - | chr1_1:54102198-54102217 | None:intergenic | 40.0% | |
| TTCCAACCAAGAAAAAAGCC+AGG | + | chr1_1:54102332-54102351 | Msa0028980:CDS | 40.0% | |
| !!! | AACCTGGCTTTTTTCTTGGT+TGG | - | chr1_1:54102337-54102356 | None:intergenic | 40.0% |
| !! | GATTTAAAACTGGACTGGTC+AGG | - | chr1_1:54102511-54102530 | None:intergenic | 40.0% |
| TGCACAAGCTGCAAAACATA+AGG | - | chr1_1:54102831-54102850 | None:intergenic | 40.0% | |
| AACATGATTGAGACCTTGCT+GGG | - | chr1_1:54102927-54102946 | None:intergenic | 40.0% | |
| AAACATGATTGAGACCTTGC+TGG | - | chr1_1:54102928-54102947 | None:intergenic | 40.0% | |
| AGCTAGTAAGTCCATTCCTT+TGG | - | chr1_1:54103228-54103247 | None:intergenic | 40.0% | |
| ! | CTACTAGCTAGCTCTTCATT+TGG | + | chr1_1:54103246-54103265 | Msa0028980:three_prime_UTR | 40.0% |
| TTGAGAGGGACACAAATTGA+AGG | + | chr1_1:54103289-54103308 | Msa0028980:three_prime_UTR | 40.0% | |
| GCTCATGATGATTGTGAAGT+TGG | + | chr1_1:54101828-54101847 | Msa0028980:CDS | 40.0% | |
| !!! | GGTTTTGAACCTTTTGGTGT+TGG | - | chr1_1:54102002-54102021 | None:intergenic | 40.0% |
| CAGCAGCATCACAAATCATT+TGG | + | chr1_1:54102045-54102064 | Msa0028980:CDS | 40.0% | |
| TTGGTACAAAGATCCTGACA+TGG | - | chr1_1:54102198-54102217 | None:intergenic | 40.0% | |
| TTCCAACCAAGAAAAAAGCC+AGG | + | chr1_1:54102332-54102351 | Msa0028980:CDS | 40.0% | |
| !!! | AACCTGGCTTTTTTCTTGGT+TGG | - | chr1_1:54102337-54102356 | None:intergenic | 40.0% |
| !! | GATTTAAAACTGGACTGGTC+AGG | - | chr1_1:54102511-54102530 | None:intergenic | 40.0% |
| TGCACAAGCTGCAAAACATA+AGG | - | chr1_1:54102831-54102850 | None:intergenic | 40.0% | |
| AACATGATTGAGACCTTGCT+GGG | - | chr1_1:54102927-54102946 | None:intergenic | 40.0% | |
| AAACATGATTGAGACCTTGC+TGG | - | chr1_1:54102928-54102947 | None:intergenic | 40.0% | |
| AGCTAGTAAGTCCATTCCTT+TGG | - | chr1_1:54103228-54103247 | None:intergenic | 40.0% | |
| ! | CTACTAGCTAGCTCTTCATT+TGG | + | chr1_1:54103246-54103265 | Msa0028980:three_prime_UTR | 40.0% |
| TTGAGAGGGACACAAATTGA+AGG | + | chr1_1:54103289-54103308 | Msa0028980:three_prime_UTR | 40.0% | |
| ACCTCGTCCAGAACATAAGA+GGG | - | chr1_1:54101879-54101898 | None:intergenic | 45.0% | |
| TACCTCGTCCAGAACATAAG+AGG | - | chr1_1:54101880-54101899 | None:intergenic | 45.0% | |
| ! | ATGATTTGTGATGCTGCTGC+TGG | - | chr1_1:54102044-54102063 | None:intergenic | 45.0% |
| !! | TGGATTTTGAGTGCTGCACA+AGG | - | chr1_1:54102178-54102197 | None:intergenic | 45.0% |
| CAGCACTCAAAATCCATGTC+AGG | + | chr1_1:54102182-54102201 | Msa0028980:intron | 45.0% | |
| !!! | GGTTCGCAAGTTTTGGCTTT+TGG | - | chr1_1:54102217-54102236 | None:intergenic | 45.0% |
| GCATTCCATTTCCAATGCCA+CGG | - | chr1_1:54102238-54102257 | None:intergenic | 45.0% | |
| AACTTCGTGTCTGCTCTTTG+AGG | - | chr1_1:54102314-54102333 | None:intergenic | 45.0% | |
| ACATGATTGAGACCTTGCTG+GGG | - | chr1_1:54102926-54102945 | None:intergenic | 45.0% | |
| TACAAACCTAGACGTGGTGA+AGG | + | chr1_1:54103102-54103121 | Msa0028980:CDS | 45.0% | |
| ACAAACCTAGACGTGGTGAA+GGG | + | chr1_1:54103103-54103122 | Msa0028980:CDS | 45.0% | |
| ACCTCGTCCAGAACATAAGA+GGG | - | chr1_1:54101879-54101898 | None:intergenic | 45.0% | |
| TACCTCGTCCAGAACATAAG+AGG | - | chr1_1:54101880-54101899 | None:intergenic | 45.0% | |
| ! | ATGATTTGTGATGCTGCTGC+TGG | - | chr1_1:54102044-54102063 | None:intergenic | 45.0% |
| !! | TGGATTTTGAGTGCTGCACA+AGG | - | chr1_1:54102178-54102197 | None:intergenic | 45.0% |
| CAGCACTCAAAATCCATGTC+AGG | + | chr1_1:54102182-54102201 | Msa0028980:intron | 45.0% | |
| !!! | GGTTCGCAAGTTTTGGCTTT+TGG | - | chr1_1:54102217-54102236 | None:intergenic | 45.0% |
| GCATTCCATTTCCAATGCCA+CGG | - | chr1_1:54102238-54102257 | None:intergenic | 45.0% | |
| AACTTCGTGTCTGCTCTTTG+AGG | - | chr1_1:54102314-54102333 | None:intergenic | 45.0% | |
| ACATGATTGAGACCTTGCTG+GGG | - | chr1_1:54102926-54102945 | None:intergenic | 45.0% | |
| TACAAACCTAGACGTGGTGA+AGG | + | chr1_1:54103102-54103121 | Msa0028980:CDS | 45.0% | |
| ACAAACCTAGACGTGGTGAA+GGG | + | chr1_1:54103103-54103122 | Msa0028980:CDS | 45.0% | |
| !!! | ATGAAAATAAAATTTTAAAT+AGG | - | chr1_1:54102122-54102141 | None:intergenic | 5.0% |
| !!! | ATGAAAATAAAATTTTAAAT+AGG | - | chr1_1:54102122-54102141 | None:intergenic | 5.0% |
| ! | ACCCTCTTATGTTCTGGACG+AGG | + | chr1_1:54101875-54101894 | Msa0028980:CDS | 50.0% |
| AAGCCAAAACTTGCGAACCG+TGG | + | chr1_1:54102218-54102237 | Msa0028980:CDS | 50.0% | |
| ! | ATGCCACGGTTCGCAAGTTT+TGG | - | chr1_1:54102224-54102243 | None:intergenic | 50.0% |
| AAACTTGCGAACCGTGGCAT+TGG | + | chr1_1:54102224-54102243 | Msa0028980:CDS | 50.0% | |
| GAATCAAGCCATGGATCGTG+CGG | + | chr1_1:54102272-54102291 | Msa0028980:CDS | 50.0% | |
| TAGAGCTTGAACAACTCGGG+CGG | - | chr1_1:54102867-54102886 | None:intergenic | 50.0% | |
| ! | ACCCTCTTATGTTCTGGACG+AGG | + | chr1_1:54101875-54101894 | Msa0028980:CDS | 50.0% |
| AAGCCAAAACTTGCGAACCG+TGG | + | chr1_1:54102218-54102237 | Msa0028980:CDS | 50.0% | |
| ! | ATGCCACGGTTCGCAAGTTT+TGG | - | chr1_1:54102224-54102243 | None:intergenic | 50.0% |
| AAACTTGCGAACCGTGGCAT+TGG | + | chr1_1:54102224-54102243 | Msa0028980:CDS | 50.0% | |
| GAATCAAGCCATGGATCGTG+CGG | + | chr1_1:54102272-54102291 | Msa0028980:CDS | 50.0% | |
| TAGAGCTTGAACAACTCGGG+CGG | - | chr1_1:54102867-54102886 | None:intergenic | 50.0% | |
| ! | GCGAACCGTGGCATTGGAAA+TGG | + | chr1_1:54102230-54102249 | Msa0028980:CDS | 55.0% |
| AGAGCTTGAACAACTCGGGC+GGG | - | chr1_1:54102866-54102885 | None:intergenic | 55.0% | |
| GTGCAGATATCACCCCAGCA+AGG | + | chr1_1:54102911-54102930 | Msa0028980:intron | 55.0% | |
| ! | GCGAACCGTGGCATTGGAAA+TGG | + | chr1_1:54102230-54102249 | Msa0028980:CDS | 55.0% |
| AGAGCTTGAACAACTCGGGC+GGG | - | chr1_1:54102866-54102885 | None:intergenic | 55.0% | |
| GTGCAGATATCACCCCAGCA+AGG | + | chr1_1:54102911-54102930 | Msa0028980:intron | 55.0% | |
| AGCCATGGATCGTGCGGTAC+TGG | + | chr1_1:54102278-54102297 | Msa0028980:CDS | 60.0% | |
| CTTGAACAACTCGGGCGGGA+AGG | - | chr1_1:54102862-54102881 | None:intergenic | 60.0% | |
| GTGTGCCCTTCACCACGTCT+AGG | - | chr1_1:54103111-54103130 | None:intergenic | 60.0% | |
| AGCCATGGATCGTGCGGTAC+TGG | + | chr1_1:54102278-54102297 | Msa0028980:CDS | 60.0% | |
| CTTGAACAACTCGGGCGGGA+AGG | - | chr1_1:54102862-54102881 | None:intergenic | 60.0% | |
| GTGTGCCCTTCACCACGTCT+AGG | - | chr1_1:54103111-54103130 | None:intergenic | 60.0% | |
| CGCCAGTACCGCACGATCCA+TGG | - | chr1_1:54102283-54102302 | None:intergenic | 65.0% | |
| GAACAACTCGGGCGGGAAGG+AGG | - | chr1_1:54102859-54102878 | None:intergenic | 65.0% | |
| CGCCAGTACCGCACGATCCA+TGG | - | chr1_1:54102283-54102302 | None:intergenic | 65.0% | |
| GAACAACTCGGGCGGGAAGG+AGG | - | chr1_1:54102859-54102878 | None:intergenic | 65.0% | |
| ACTCGGGCGGGAAGGAGGAC+AGG | - | chr1_1:54102854-54102873 | None:intergenic | 70.0% | |
| ACTCGGGCGGGAAGGAGGAC+AGG | - | chr1_1:54102854-54102873 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 54101813 | 54103397 | 54101813 | ID=Msa0028980;Name=Msa0028980 |
| chr1_1 | mRNA | 54101813 | 54103397 | 54101813 | ID=Msa0028980-mRNA-1;Parent=Msa0028980;Name=Msa0028980-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.66|0.5|1|1|1|4|152|167 |
| chr1_1 | exon | 54101813 | 54101896 | 54101813 | ID=Msa0028980-mRNA-1:exon:16008;Parent=Msa0028980-mRNA-1 |
| chr1_1 | exon | 54101985 | 54102083 | 54101985 | ID=Msa0028980-mRNA-1:exon:16009;Parent=Msa0028980-mRNA-1 |
| chr1_1 | exon | 54102185 | 54102353 | 54102185 | ID=Msa0028980-mRNA-1:exon:16010;Parent=Msa0028980-mRNA-1 |
| chr1_1 | exon | 54103094 | 54103397 | 54103094 | ID=Msa0028980-mRNA-1:exon:16011;Parent=Msa0028980-mRNA-1 |
| chr1_1 | CDS | 54101813 | 54101896 | 54101813 | ID=Msa0028980-mRNA-1:cds;Parent=Msa0028980-mRNA-1 |
| chr1_1 | CDS | 54101985 | 54102083 | 54101985 | ID=Msa0028980-mRNA-1:cds;Parent=Msa0028980-mRNA-1 |
| chr1_1 | CDS | 54102185 | 54102353 | 54102185 | ID=Msa0028980-mRNA-1:cds;Parent=Msa0028980-mRNA-1 |
| chr1_1 | CDS | 54103094 | 54103245 | 54103094 | ID=Msa0028980-mRNA-1:cds;Parent=Msa0028980-mRNA-1 |
| chr1_1 | three_prime_UTR | 54103246 | 54103397 | 54103246 | ID=Msa0028980-mRNA-1:three_prime_utr;Parent=Msa0028980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
