Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127150 | G7IED7 | 89.899 | 198 | 13 | 2 | 1 | 197 | 1 | 192 | 5.63e-125 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028980 | Msa0127150 | 0.898710 | 4.064620e-77 | -8.615850e-47 |
| Msa0082520 | Msa0127150 | 0.995762 | 1.268802e-219 | -8.615850e-47 |
| Msa0127150 | Msa0318490 | 0.801719 | 7.886863e-49 | -8.615850e-47 |
| Msa0127150 | Msa0386910 | 0.801616 | 8.279219e-49 | -8.615850e-47 |
| Msa0127150 | Msa0510050 | 0.801864 | 7.363654e-49 | -8.615850e-47 |
| Msa0127150 | Msa0546590 | 0.801737 | 7.819509e-49 | -8.615850e-47 |
| Msa0127150 | Msa0682110 | 0.840183 | 1.013403e-57 | -8.615850e-47 |
| Msa0127150 | Msa0682160 | 0.835360 | 1.755665e-56 | -8.615850e-47 |
| Msa0127150 | Msa0712880 | 0.811311 | 7.458508e-51 | -8.615850e-47 |
| Msa0127150 | Msa0725580 | 0.827205 | 1.779044e-54 | -8.615850e-47 |
| Msa0127150 | Msa0873910 | 0.817750 | 2.804610e-52 | -8.615850e-47 |
| Msa0127150 | Msa0906660 | 0.816282 | 5.994014e-52 | -8.615850e-47 |
| Msa0127150 | Msa0975960 | 0.809520 | 1.817295e-50 | -8.615850e-47 |
| Msa0127150 | Msa1136760 | 0.814454 | 1.527917e-51 | -8.615850e-47 |
| Msa0127150 | Msa1368420 | 0.806098 | 9.699729e-50 | -8.615850e-47 |
| Msa0127150 | Msa1383220 | 0.803289 | 3.742466e-49 | -8.615850e-47 |
| Msa0127150 | Msa1398140 | 0.808904 | 2.462354e-50 | -8.615850e-47 |
| Msa0127150 | Msa1433360 | 0.807422 | 5.093720e-50 | -8.615850e-47 |
| Msa0127150 | Msa1455200 | 0.804215 | 2.403505e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127150 | MtrunA17_Chr1g0185611 | 89.899 | 198 | 13 | 2 | 1 | 197 | 1 | 192 | 1.08e-128 | 359 |
| Msa0127150 | MtrunA17_Chr7g0240771 | 34.959 | 123 | 64 | 4 | 85 | 197 | 274 | 390 | 3.98e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127150 | AT4G02830.2 | 34.872 | 195 | 101 | 11 | 12 | 197 | 5 | 182 | 4.29e-17 | 75.9 |
| Msa0127150 | AT4G02830.1 | 42.609 | 115 | 51 | 5 | 85 | 197 | 83 | 184 | 8.54e-17 | 75.1 |
| Msa0127150 | AT4G02830.3 | 55.556 | 63 | 25 | 2 | 85 | 146 | 83 | 143 | 6.57e-14 | 67.0 |
Find 48 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCCACGGTTCGCAAGTTT+TGG | 0.289674 | 1_3:-56356735 | None:intergenic |
| TTGTTTACCCTCTTATGTTC+TGG | 0.328861 | 1_3:+56356367 | Msa0127150:CDS |
| CTACTAGCTAGCTCTTCATT+TGG | 0.355880 | 1_3:+56357759 | Msa0127150:three_prime_UTR |
| AGCTAGTAAGTCCATTCCTT+TGG | 0.376321 | 1_3:-56357738 | None:intergenic |
| TACTAGCTAGCTCTTCATTT+GGG | 0.381351 | 1_3:+56357760 | Msa0127150:three_prime_UTR |
| AATATTAATGTGCATGCATT+AGG | 0.381358 | 1_3:+56357400 | Msa0127150:CDS |
| CAGCAGCATCACAAATCATT+TGG | 0.391782 | 1_3:+56356559 | Msa0127150:CDS |
| GCGAACCGTGGCATTGGAAA+TGG | 0.411841 | 1_3:+56356744 | Msa0127150:CDS |
| AGCCATGGATCGTGCGGTAC+TGG | 0.416792 | 1_3:+56356792 | Msa0127150:CDS |
| GGTGATGATGCAATATTTGT+TGG | 0.419116 | 1_3:-56356534 | None:intergenic |
| AAACATGATTGAGACCTTGC+TGG | 0.430425 | 1_3:-56357438 | None:intergenic |
| AACTTCGTGTCTGCTCTTTG+AGG | 0.441594 | 1_3:-56356825 | None:intergenic |
| GCTCATGATGATTGTGAAGT+TGG | 0.449922 | 1_3:+56356326 | Msa0127150:CDS |
| ACTCGGGCGGGAAGGAGGAC+AGG | 0.461569 | 1_3:-56357364 | None:intergenic |
| TACCTCGTCCAGAACATAAG+AGG | 0.467252 | 1_3:-56356375 | None:intergenic |
| AAACTTGCGAACCGTGGCAT+TGG | 0.469865 | 1_3:+56356738 | Msa0127150:CDS |
| GGATATTTCTTCCAAAGGAA+TGG | 0.492493 | 1_3:+56357727 | Msa0127150:CDS |
| CAGCACTCAAAATCCATGTC+AGG | 0.506647 | 1_3:+56356696 | Msa0127150:intron |
| CGCCAGTACCGCACGATCCA+TGG | 0.512478 | 1_3:-56356794 | None:intergenic |
| GTGTGCCCTTCACCACGTCT+AGG | 0.518711 | 1_3:-56357621 | None:intergenic |
| ATGATTTGTGATGCTGCTGC+TGG | 0.519374 | 1_3:-56356555 | None:intergenic |
| TCAAGGGATATTTCTTCCAA+AGG | 0.525267 | 1_3:+56357722 | Msa0127150:CDS |
| TCTCAGAATCAATGTTCTCA+AGG | 0.529569 | 1_3:+56357705 | Msa0127150:CDS |
| TATTTAGAGCTTGAACAACT+CGG | 0.547571 | 1_3:-56357381 | None:intergenic |
| TACAAACCTAGACGTGGTGA+AGG | 0.550393 | 1_3:+56357615 | Msa0127150:CDS |
| TTGAGAGGGACACAAATTGA+AGG | 0.551770 | 1_3:+56357802 | Msa0127150:three_prime_UTR |
| AGAGAACAATTATATTTGAG+AGG | 0.558837 | 1_3:+56357787 | Msa0127150:three_prime_UTR |
| CTTGAACAACTCGGGCGGGA+AGG | 0.560524 | 1_3:-56357372 | None:intergenic |
| AGAGCTTGAACAACTCGGGC+GGG | 0.561817 | 1_3:-56357376 | None:intergenic |
| AACATGATTGAGACCTTGCT+GGG | 0.563709 | 1_3:-56357437 | None:intergenic |
| ATTTAGAGCTTGAACAACTC+GGG | 0.565991 | 1_3:-56357380 | None:intergenic |
| ATGTAGTATGCATAAAAGCT+AGG | 0.568939 | 1_3:+56357872 | Msa0127150:three_prime_UTR |
| ACCCTCTTATGTTCTGGACG+AGG | 0.572361 | 1_3:+56356373 | Msa0127150:CDS |
| GCATTCCATTTCCAATGCCA+CGG | 0.577091 | 1_3:-56356749 | None:intergenic |
| ATGAGCAATAGTAGTGGCCA+TGG | 0.578077 | 1_3:-56356309 | None:intergenic |
| ATTTGGAGAATCACAATCAC+AGG | 0.578607 | 1_3:+56356576 | Msa0127150:CDS |
| GAGAACAATTATATTTGAGA+GGG | 0.581812 | 1_3:+56357788 | Msa0127150:three_prime_UTR |
| CTCAGAATCAATGTTCTCAA+GGG | 0.590442 | 1_3:+56357706 | Msa0127150:CDS |
| GAACAACTCGGGCGGGAAGG+AGG | 0.604716 | 1_3:-56357369 | None:intergenic |
| ACCTCGTCCAGAACATAAGA+GGG | 0.644914 | 1_3:-56356374 | None:intergenic |
| ACAAACCTAGACGTGGTGAA+GGG | 0.647783 | 1_3:+56357616 | Msa0127150:CDS |
| TAGAGCTTGAACAACTCGGG+CGG | 0.649308 | 1_3:-56357377 | None:intergenic |
| TTGGTACAAAGATCCTGACA+TGG | 0.656996 | 1_3:-56356709 | None:intergenic |
| AAGCCAAAACTTGCGAACCG+TGG | 0.669362 | 1_3:+56356732 | Msa0127150:CDS |
| ATCATCATGAGCAATAGTAG+TGG | 0.670643 | 1_3:-56356315 | None:intergenic |
| GAATCAAGCCATGGATCGTG+CGG | 0.670771 | 1_3:+56356786 | Msa0127150:CDS |
| GTGCAGATATCACCCCAGCA+AGG | 0.682483 | 1_3:+56357424 | Msa0127150:CDS |
| ACATGATTGAGACCTTGCTG+GGG | 0.788840 | 1_3:-56357436 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAAATTTTAAATAGG+AGG | - | chr1_3:56356633-56356652 | None:intergenic | 10.0% |
| !!! | AAAATAAAATTTTAAATAGG+AGG | - | chr1_3:56356633-56356652 | None:intergenic | 10.0% |
| !! | ATATATAATTTCCTTTCTTT+AGG | + | chr1_3:56356477-56356496 | Msa0127150:intron | 15.0% |
| !!! | TTGATCATTTTTGAAAAAAT+TGG | + | chr1_3:56356883-56356902 | Msa0127150:intron | 15.0% |
| !! | TTAGTTAGAATTTCAAAAAA+TGG | + | chr1_3:56357514-56357533 | Msa0127150:intron | 15.0% |
| !! | AATTATCTTTATAGACTTAA+GGG | - | chr1_3:56357562-56357581 | None:intergenic | 15.0% |
| !! | ATATATAATTTCCTTTCTTT+AGG | + | chr1_3:56356477-56356496 | Msa0127150:intron | 15.0% |
| !!! | TTGATCATTTTTGAAAAAAT+TGG | + | chr1_3:56356883-56356902 | Msa0127150:intron | 15.0% |
| !! | TTAGTTAGAATTTCAAAAAA+TGG | + | chr1_3:56357514-56357533 | Msa0127150:intron | 15.0% |
| !! | AATTATCTTTATAGACTTAA+GGG | - | chr1_3:56357562-56357581 | None:intergenic | 15.0% |
| !! | CAATTATCTTTATAGACTTA+AGG | - | chr1_3:56357563-56357582 | None:intergenic | 20.0% |
| !! | CAATTATCTTTATAGACTTA+AGG | - | chr1_3:56357563-56357582 | None:intergenic | 20.0% |
| ! | TTCATCAAATGTTAGCTATT+AGG | + | chr1_3:56356414-56356433 | Msa0127150:intron | 25.0% |
| ! | TTTCATACATACCTAAAGAA+AGG | - | chr1_3:56356491-56356510 | None:intergenic | 25.0% |
| !!! | ATATTTTTAGAATCAAGCCA+TGG | + | chr1_3:56356777-56356796 | Msa0127150:CDS | 25.0% |
| ! | ATTGGAAGTTAATTCTTACA+TGG | + | chr1_3:56356901-56356920 | Msa0127150:intron | 25.0% |
| ! | ATTACATCACATAGTTACTA+TGG | + | chr1_3:56356979-56356998 | Msa0127150:intron | 25.0% |
| !!! | TTTCAATCGTTGATTTAAAC+TGG | - | chr1_3:56357035-56357054 | None:intergenic | 25.0% |
| ! | AATATTAATGTGCATGCATT+AGG | + | chr1_3:56357400-56357419 | Msa0127150:CDS | 25.0% |
| ! | AAGAAAAAAGATCAGAAAGA+TGG | + | chr1_3:56357660-56357679 | Msa0127150:CDS | 25.0% |
| ! | AGAGAACAATTATATTTGAG+AGG | + | chr1_3:56357787-56357806 | Msa0127150:three_prime_UTR | 25.0% |
| ! | GAGAACAATTATATTTGAGA+GGG | + | chr1_3:56357788-56357807 | Msa0127150:three_prime_UTR | 25.0% |
| ! | TTCATCAAATGTTAGCTATT+AGG | + | chr1_3:56356414-56356433 | Msa0127150:intron | 25.0% |
| ! | TTTCATACATACCTAAAGAA+AGG | - | chr1_3:56356491-56356510 | None:intergenic | 25.0% |
| !!! | ATATTTTTAGAATCAAGCCA+TGG | + | chr1_3:56356777-56356796 | Msa0127150:CDS | 25.0% |
| ! | ATTGGAAGTTAATTCTTACA+TGG | + | chr1_3:56356901-56356920 | Msa0127150:intron | 25.0% |
| ! | ATTACATCACATAGTTACTA+TGG | + | chr1_3:56356979-56356998 | Msa0127150:intron | 25.0% |
| !!! | TTTCAATCGTTGATTTAAAC+TGG | - | chr1_3:56357035-56357054 | None:intergenic | 25.0% |
| ! | AATATTAATGTGCATGCATT+AGG | + | chr1_3:56357400-56357419 | Msa0127150:CDS | 25.0% |
| ! | AAGAAAAAAGATCAGAAAGA+TGG | + | chr1_3:56357660-56357679 | Msa0127150:CDS | 25.0% |
| ! | AGAGAACAATTATATTTGAG+AGG | + | chr1_3:56357787-56357806 | Msa0127150:three_prime_UTR | 25.0% |
| ! | GAGAACAATTATATTTGAGA+GGG | + | chr1_3:56357788-56357807 | Msa0127150:three_prime_UTR | 25.0% |
| TATGAAAAACCAACACCAAA+AGG | + | chr1_3:56356504-56356523 | Msa0127150:CDS | 30.0% | |
| !!! | TTTGTTGGTTTTGAACCTTT+TGG | - | chr1_3:56356522-56356541 | None:intergenic | 30.0% |
| !! | AATCACAGGTACTGTTTTAT+CGG | + | chr1_3:56356590-56356609 | Msa0127150:intron | 30.0% |
| ! | TTTTCTGTCGTAGTTAATCT+CGG | - | chr1_3:56357116-56357135 | None:intergenic | 30.0% |
| TGAATAATTGTGCGTATGTT+TGG | + | chr1_3:56357213-56357232 | Msa0127150:intron | 30.0% | |
| ! | TATTTAGAGCTTGAACAACT+CGG | - | chr1_3:56357384-56357403 | None:intergenic | 30.0% |
| AATTGACATGTCCTTTCATT+TGG | + | chr1_3:56357578-56357597 | Msa0127150:intron | 30.0% | |
| ! | AGCTTTTATGCATACTACAT+AGG | - | chr1_3:56357872-56357891 | None:intergenic | 30.0% |
| ATGTAGTATGCATAAAAGCT+AGG | + | chr1_3:56357872-56357891 | Msa0127150:three_prime_UTR | 30.0% | |
| TATGAAAAACCAACACCAAA+AGG | + | chr1_3:56356504-56356523 | Msa0127150:CDS | 30.0% | |
| !!! | TTTGTTGGTTTTGAACCTTT+TGG | - | chr1_3:56356522-56356541 | None:intergenic | 30.0% |
| !! | AATCACAGGTACTGTTTTAT+CGG | + | chr1_3:56356590-56356609 | Msa0127150:intron | 30.0% |
| ! | TTTTCTGTCGTAGTTAATCT+CGG | - | chr1_3:56357116-56357135 | None:intergenic | 30.0% |
| TGAATAATTGTGCGTATGTT+TGG | + | chr1_3:56357213-56357232 | Msa0127150:intron | 30.0% | |
| ! | TATTTAGAGCTTGAACAACT+CGG | - | chr1_3:56357384-56357403 | None:intergenic | 30.0% |
| AATTGACATGTCCTTTCATT+TGG | + | chr1_3:56357578-56357597 | Msa0127150:intron | 30.0% | |
| ! | AGCTTTTATGCATACTACAT+AGG | - | chr1_3:56357872-56357891 | None:intergenic | 30.0% |
| ATGTAGTATGCATAAAAGCT+AGG | + | chr1_3:56357872-56357891 | Msa0127150:three_prime_UTR | 30.0% | |
| ATCATCATGAGCAATAGTAG+TGG | - | chr1_3:56356318-56356337 | None:intergenic | 35.0% | |
| !!! | TGTGAAGTTGGTTTTGAAGA+AGG | + | chr1_3:56356338-56356357 | Msa0127150:CDS | 35.0% |
| TTGTTTACCCTCTTATGTTC+TGG | + | chr1_3:56356367-56356386 | Msa0127150:CDS | 35.0% | |
| ! | GGTGATGATGCAATATTTGT+TGG | - | chr1_3:56356537-56356556 | None:intergenic | 35.0% |
| ATTTGGAGAATCACAATCAC+AGG | + | chr1_3:56356576-56356595 | Msa0127150:CDS | 35.0% | |
| !!! | TATCAACCTGGCTTTTTTCT+TGG | - | chr1_3:56356855-56356874 | None:intergenic | 35.0% |
| TCAAGCAACATATATCAACC+TGG | - | chr1_3:56356867-56356886 | None:intergenic | 35.0% | |
| !! | ATCGTTGATTTAAACTGGAC+TGG | - | chr1_3:56357030-56357049 | None:intergenic | 35.0% |
| GCATTGGAACGTGAAAAAAT+TGG | - | chr1_3:56357252-56357271 | None:intergenic | 35.0% | |
| AAATCGCGAAAATGTTGCAT+TGG | - | chr1_3:56357268-56357287 | None:intergenic | 35.0% | |
| ! | ATTTAGAGCTTGAACAACTC+GGG | - | chr1_3:56357383-56357402 | None:intergenic | 35.0% |
| TTGAACTGCAACCAAATGAA+AGG | - | chr1_3:56357592-56357611 | None:intergenic | 35.0% | |
| CAAAAATACAAACCTAGACG+TGG | + | chr1_3:56357609-56357628 | Msa0127150:CDS | 35.0% | |
| TCTCAGAATCAATGTTCTCA+AGG | + | chr1_3:56357705-56357724 | Msa0127150:CDS | 35.0% | |
| CTCAGAATCAATGTTCTCAA+GGG | + | chr1_3:56357706-56357725 | Msa0127150:CDS | 35.0% | |
| TCAAGGGATATTTCTTCCAA+AGG | + | chr1_3:56357722-56357741 | Msa0127150:CDS | 35.0% | |
| GGATATTTCTTCCAAAGGAA+TGG | + | chr1_3:56357727-56357746 | Msa0127150:CDS | 35.0% | |
| ! | TACTAGCTAGCTCTTCATTT+GGG | + | chr1_3:56357760-56357779 | Msa0127150:three_prime_UTR | 35.0% |
| ATCATCATGAGCAATAGTAG+TGG | - | chr1_3:56356318-56356337 | None:intergenic | 35.0% | |
| !!! | TGTGAAGTTGGTTTTGAAGA+AGG | + | chr1_3:56356338-56356357 | Msa0127150:CDS | 35.0% |
| TTGTTTACCCTCTTATGTTC+TGG | + | chr1_3:56356367-56356386 | Msa0127150:CDS | 35.0% | |
| ! | GGTGATGATGCAATATTTGT+TGG | - | chr1_3:56356537-56356556 | None:intergenic | 35.0% |
| ATTTGGAGAATCACAATCAC+AGG | + | chr1_3:56356576-56356595 | Msa0127150:CDS | 35.0% | |
| !!! | TATCAACCTGGCTTTTTTCT+TGG | - | chr1_3:56356855-56356874 | None:intergenic | 35.0% |
| TCAAGCAACATATATCAACC+TGG | - | chr1_3:56356867-56356886 | None:intergenic | 35.0% | |
| !! | ATCGTTGATTTAAACTGGAC+TGG | - | chr1_3:56357030-56357049 | None:intergenic | 35.0% |
| GCATTGGAACGTGAAAAAAT+TGG | - | chr1_3:56357252-56357271 | None:intergenic | 35.0% | |
| AAATCGCGAAAATGTTGCAT+TGG | - | chr1_3:56357268-56357287 | None:intergenic | 35.0% | |
| ! | ATTTAGAGCTTGAACAACTC+GGG | - | chr1_3:56357383-56357402 | None:intergenic | 35.0% |
| TTGAACTGCAACCAAATGAA+AGG | - | chr1_3:56357592-56357611 | None:intergenic | 35.0% | |
| CAAAAATACAAACCTAGACG+TGG | + | chr1_3:56357609-56357628 | Msa0127150:CDS | 35.0% | |
| TCTCAGAATCAATGTTCTCA+AGG | + | chr1_3:56357705-56357724 | Msa0127150:CDS | 35.0% | |
| CTCAGAATCAATGTTCTCAA+GGG | + | chr1_3:56357706-56357725 | Msa0127150:CDS | 35.0% | |
| TCAAGGGATATTTCTTCCAA+AGG | + | chr1_3:56357722-56357741 | Msa0127150:CDS | 35.0% | |
| GGATATTTCTTCCAAAGGAA+TGG | + | chr1_3:56357727-56357746 | Msa0127150:CDS | 35.0% | |
| ! | TACTAGCTAGCTCTTCATTT+GGG | + | chr1_3:56357760-56357779 | Msa0127150:three_prime_UTR | 35.0% |
| GCTCATGATGATTGTGAAGT+TGG | + | chr1_3:56356326-56356345 | Msa0127150:CDS | 40.0% | |
| !!! | GGTTTTGAACCTTTTGGTGT+TGG | - | chr1_3:56356516-56356535 | None:intergenic | 40.0% |
| CAGCAGCATCACAAATCATT+TGG | + | chr1_3:56356559-56356578 | Msa0127150:CDS | 40.0% | |
| TTGGTACAAAGATCCTGACA+TGG | - | chr1_3:56356712-56356731 | None:intergenic | 40.0% | |
| TTCCAACCAAGAAAAAAGCC+AGG | + | chr1_3:56356846-56356865 | Msa0127150:CDS | 40.0% | |
| !!! | AACCTGGCTTTTTTCTTGGT+TGG | - | chr1_3:56356851-56356870 | None:intergenic | 40.0% |
| !! | TGATTTAAACTGGACTGGTC+AGG | - | chr1_3:56357025-56357044 | None:intergenic | 40.0% |
| TGCACAAGCTGCAAAACATA+AGG | - | chr1_3:56357344-56357363 | None:intergenic | 40.0% | |
| AACATGATTGAGACCTTGCT+GGG | - | chr1_3:56357440-56357459 | None:intergenic | 40.0% | |
| AAACATGATTGAGACCTTGC+TGG | - | chr1_3:56357441-56357460 | None:intergenic | 40.0% | |
| AGCTAGTAAGTCCATTCCTT+TGG | - | chr1_3:56357741-56357760 | None:intergenic | 40.0% | |
| ! | CTACTAGCTAGCTCTTCATT+TGG | + | chr1_3:56357759-56357778 | Msa0127150:three_prime_UTR | 40.0% |
| TTGAGAGGGACACAAATTGA+AGG | + | chr1_3:56357802-56357821 | Msa0127150:three_prime_UTR | 40.0% | |
| GCTCATGATGATTGTGAAGT+TGG | + | chr1_3:56356326-56356345 | Msa0127150:CDS | 40.0% | |
| !!! | GGTTTTGAACCTTTTGGTGT+TGG | - | chr1_3:56356516-56356535 | None:intergenic | 40.0% |
| CAGCAGCATCACAAATCATT+TGG | + | chr1_3:56356559-56356578 | Msa0127150:CDS | 40.0% | |
| TTGGTACAAAGATCCTGACA+TGG | - | chr1_3:56356712-56356731 | None:intergenic | 40.0% | |
| TTCCAACCAAGAAAAAAGCC+AGG | + | chr1_3:56356846-56356865 | Msa0127150:CDS | 40.0% | |
| !!! | AACCTGGCTTTTTTCTTGGT+TGG | - | chr1_3:56356851-56356870 | None:intergenic | 40.0% |
| !! | TGATTTAAACTGGACTGGTC+AGG | - | chr1_3:56357025-56357044 | None:intergenic | 40.0% |
| TGCACAAGCTGCAAAACATA+AGG | - | chr1_3:56357344-56357363 | None:intergenic | 40.0% | |
| AACATGATTGAGACCTTGCT+GGG | - | chr1_3:56357440-56357459 | None:intergenic | 40.0% | |
| AAACATGATTGAGACCTTGC+TGG | - | chr1_3:56357441-56357460 | None:intergenic | 40.0% | |
| AGCTAGTAAGTCCATTCCTT+TGG | - | chr1_3:56357741-56357760 | None:intergenic | 40.0% | |
| ! | CTACTAGCTAGCTCTTCATT+TGG | + | chr1_3:56357759-56357778 | Msa0127150:three_prime_UTR | 40.0% |
| TTGAGAGGGACACAAATTGA+AGG | + | chr1_3:56357802-56357821 | Msa0127150:three_prime_UTR | 40.0% | |
| ACCTCGTCCAGAACATAAGA+GGG | - | chr1_3:56356377-56356396 | None:intergenic | 45.0% | |
| TACCTCGTCCAGAACATAAG+AGG | - | chr1_3:56356378-56356397 | None:intergenic | 45.0% | |
| ! | ATGATTTGTGATGCTGCTGC+TGG | - | chr1_3:56356558-56356577 | None:intergenic | 45.0% |
| !! | TGGATTTTGAGTGCTGCACA+AGG | - | chr1_3:56356692-56356711 | None:intergenic | 45.0% |
| CAGCACTCAAAATCCATGTC+AGG | + | chr1_3:56356696-56356715 | Msa0127150:intron | 45.0% | |
| !!! | GGTTCGCAAGTTTTGGCTTT+TGG | - | chr1_3:56356731-56356750 | None:intergenic | 45.0% |
| GCATTCCATTTCCAATGCCA+CGG | - | chr1_3:56356752-56356771 | None:intergenic | 45.0% | |
| AACTTCGTGTCTGCTCTTTG+AGG | - | chr1_3:56356828-56356847 | None:intergenic | 45.0% | |
| ACATGATTGAGACCTTGCTG+GGG | - | chr1_3:56357439-56357458 | None:intergenic | 45.0% | |
| TACAAACCTAGACGTGGTGA+AGG | + | chr1_3:56357615-56357634 | Msa0127150:CDS | 45.0% | |
| ACAAACCTAGACGTGGTGAA+GGG | + | chr1_3:56357616-56357635 | Msa0127150:CDS | 45.0% | |
| ACCTCGTCCAGAACATAAGA+GGG | - | chr1_3:56356377-56356396 | None:intergenic | 45.0% | |
| TACCTCGTCCAGAACATAAG+AGG | - | chr1_3:56356378-56356397 | None:intergenic | 45.0% | |
| ! | ATGATTTGTGATGCTGCTGC+TGG | - | chr1_3:56356558-56356577 | None:intergenic | 45.0% |
| !! | TGGATTTTGAGTGCTGCACA+AGG | - | chr1_3:56356692-56356711 | None:intergenic | 45.0% |
| CAGCACTCAAAATCCATGTC+AGG | + | chr1_3:56356696-56356715 | Msa0127150:intron | 45.0% | |
| !!! | GGTTCGCAAGTTTTGGCTTT+TGG | - | chr1_3:56356731-56356750 | None:intergenic | 45.0% |
| GCATTCCATTTCCAATGCCA+CGG | - | chr1_3:56356752-56356771 | None:intergenic | 45.0% | |
| AACTTCGTGTCTGCTCTTTG+AGG | - | chr1_3:56356828-56356847 | None:intergenic | 45.0% | |
| ACATGATTGAGACCTTGCTG+GGG | - | chr1_3:56357439-56357458 | None:intergenic | 45.0% | |
| TACAAACCTAGACGTGGTGA+AGG | + | chr1_3:56357615-56357634 | Msa0127150:CDS | 45.0% | |
| ACAAACCTAGACGTGGTGAA+GGG | + | chr1_3:56357616-56357635 | Msa0127150:CDS | 45.0% | |
| !!! | ATGAAAATAAAATTTTAAAT+AGG | - | chr1_3:56356636-56356655 | None:intergenic | 5.0% |
| !!! | ATGAAAATAAAATTTTAAAT+AGG | - | chr1_3:56356636-56356655 | None:intergenic | 5.0% |
| ! | ACCCTCTTATGTTCTGGACG+AGG | + | chr1_3:56356373-56356392 | Msa0127150:CDS | 50.0% |
| AAGCCAAAACTTGCGAACCG+TGG | + | chr1_3:56356732-56356751 | Msa0127150:CDS | 50.0% | |
| ! | ATGCCACGGTTCGCAAGTTT+TGG | - | chr1_3:56356738-56356757 | None:intergenic | 50.0% |
| AAACTTGCGAACCGTGGCAT+TGG | + | chr1_3:56356738-56356757 | Msa0127150:CDS | 50.0% | |
| GAATCAAGCCATGGATCGTG+CGG | + | chr1_3:56356786-56356805 | Msa0127150:CDS | 50.0% | |
| TAGAGCTTGAACAACTCGGG+CGG | - | chr1_3:56357380-56357399 | None:intergenic | 50.0% | |
| ! | ACCCTCTTATGTTCTGGACG+AGG | + | chr1_3:56356373-56356392 | Msa0127150:CDS | 50.0% |
| AAGCCAAAACTTGCGAACCG+TGG | + | chr1_3:56356732-56356751 | Msa0127150:CDS | 50.0% | |
| ! | ATGCCACGGTTCGCAAGTTT+TGG | - | chr1_3:56356738-56356757 | None:intergenic | 50.0% |
| AAACTTGCGAACCGTGGCAT+TGG | + | chr1_3:56356738-56356757 | Msa0127150:CDS | 50.0% | |
| GAATCAAGCCATGGATCGTG+CGG | + | chr1_3:56356786-56356805 | Msa0127150:CDS | 50.0% | |
| TAGAGCTTGAACAACTCGGG+CGG | - | chr1_3:56357380-56357399 | None:intergenic | 50.0% | |
| ! | GCGAACCGTGGCATTGGAAA+TGG | + | chr1_3:56356744-56356763 | Msa0127150:CDS | 55.0% |
| AGAGCTTGAACAACTCGGGC+GGG | - | chr1_3:56357379-56357398 | None:intergenic | 55.0% | |
| GTGCAGATATCACCCCAGCA+AGG | + | chr1_3:56357424-56357443 | Msa0127150:CDS | 55.0% | |
| ! | GCGAACCGTGGCATTGGAAA+TGG | + | chr1_3:56356744-56356763 | Msa0127150:CDS | 55.0% |
| AGAGCTTGAACAACTCGGGC+GGG | - | chr1_3:56357379-56357398 | None:intergenic | 55.0% | |
| GTGCAGATATCACCCCAGCA+AGG | + | chr1_3:56357424-56357443 | Msa0127150:CDS | 55.0% | |
| AGCCATGGATCGTGCGGTAC+TGG | + | chr1_3:56356792-56356811 | Msa0127150:CDS | 60.0% | |
| CTTGAACAACTCGGGCGGGA+AGG | - | chr1_3:56357375-56357394 | None:intergenic | 60.0% | |
| GTGTGCCCTTCACCACGTCT+AGG | - | chr1_3:56357624-56357643 | None:intergenic | 60.0% | |
| AGCCATGGATCGTGCGGTAC+TGG | + | chr1_3:56356792-56356811 | Msa0127150:CDS | 60.0% | |
| CTTGAACAACTCGGGCGGGA+AGG | - | chr1_3:56357375-56357394 | None:intergenic | 60.0% | |
| GTGTGCCCTTCACCACGTCT+AGG | - | chr1_3:56357624-56357643 | None:intergenic | 60.0% | |
| CGCCAGTACCGCACGATCCA+TGG | - | chr1_3:56356797-56356816 | None:intergenic | 65.0% | |
| GAACAACTCGGGCGGGAAGG+AGG | - | chr1_3:56357372-56357391 | None:intergenic | 65.0% | |
| CGCCAGTACCGCACGATCCA+TGG | - | chr1_3:56356797-56356816 | None:intergenic | 65.0% | |
| GAACAACTCGGGCGGGAAGG+AGG | - | chr1_3:56357372-56357391 | None:intergenic | 65.0% | |
| ACTCGGGCGGGAAGGAGGAC+AGG | - | chr1_3:56357367-56357386 | None:intergenic | 70.0% | |
| ACTCGGGCGGGAAGGAGGAC+AGG | - | chr1_3:56357367-56357386 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 56356311 | 56357910 | 56356311 | ID=Msa0127150;Name=Msa0127150 |
| chr1_3 | mRNA | 56356311 | 56357910 | 56356311 | ID=Msa0127150-mRNA-1;Parent=Msa0127150;Name=Msa0127150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.4|1|1|1|5|152|197 |
| chr1_3 | exon | 56356311 | 56356394 | 56356311 | ID=Msa0127150-mRNA-1:exon:17710;Parent=Msa0127150-mRNA-1 |
| chr1_3 | exon | 56356499 | 56356597 | 56356499 | ID=Msa0127150-mRNA-1:exon:17711;Parent=Msa0127150-mRNA-1 |
| chr1_3 | exon | 56356699 | 56356867 | 56356699 | ID=Msa0127150-mRNA-1:exon:17712;Parent=Msa0127150-mRNA-1 |
| chr1_3 | exon | 56357356 | 56357445 | 56357356 | ID=Msa0127150-mRNA-1:exon:17713;Parent=Msa0127150-mRNA-1 |
| chr1_3 | exon | 56357607 | 56357910 | 56357607 | ID=Msa0127150-mRNA-1:exon:17714;Parent=Msa0127150-mRNA-1 |
| chr1_3 | CDS | 56356311 | 56356394 | 56356311 | ID=Msa0127150-mRNA-1:cds;Parent=Msa0127150-mRNA-1 |
| chr1_3 | CDS | 56356499 | 56356597 | 56356499 | ID=Msa0127150-mRNA-1:cds;Parent=Msa0127150-mRNA-1 |
| chr1_3 | CDS | 56356699 | 56356867 | 56356699 | ID=Msa0127150-mRNA-1:cds;Parent=Msa0127150-mRNA-1 |
| chr1_3 | CDS | 56357356 | 56357445 | 56357356 | ID=Msa0127150-mRNA-1:cds;Parent=Msa0127150-mRNA-1 |
| chr1_3 | CDS | 56357607 | 56357758 | 56357607 | ID=Msa0127150-mRNA-1:cds;Parent=Msa0127150-mRNA-1 |
| chr1_3 | three_prime_UTR | 56357759 | 56357910 | 56357759 | ID=Msa0127150-mRNA-1:three_prime_utr;Parent=Msa0127150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
