Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082520 | XP_003590655.1 | 89.899 | 198 | 13 | 2 | 1 | 197 | 1 | 192 | 1.18e-124 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082520 | G7IED7 | 89.899 | 198 | 13 | 2 | 1 | 197 | 1 | 192 | 5.63e-125 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028980 | Msa0082520 | 0.895088 | 1.334977e-75 | -8.615850e-47 |
| Msa0082520 | Msa0127150 | 0.995762 | 1.268802e-219 | -8.615850e-47 |
| Msa0082520 | Msa0318490 | 0.801539 | 8.586305e-49 | -8.615850e-47 |
| Msa0082520 | Msa0386910 | 0.804379 | 2.221709e-49 | -8.615850e-47 |
| Msa0082520 | Msa0546590 | 0.800513 | 1.391355e-48 | -8.615850e-47 |
| Msa0082520 | Msa0682110 | 0.837611 | 4.692258e-57 | -8.615850e-47 |
| Msa0082520 | Msa0682160 | 0.833527 | 5.065880e-56 | -8.615850e-47 |
| Msa0082520 | Msa0712880 | 0.808709 | 2.710678e-50 | -8.615850e-47 |
| Msa0082520 | Msa0725580 | 0.831065 | 2.062001e-55 | -8.615850e-47 |
| Msa0082520 | Msa0873910 | 0.821463 | 3.983486e-53 | -8.615850e-47 |
| Msa0082520 | Msa0906660 | 0.820010 | 8.594673e-53 | -8.615850e-47 |
| Msa0082520 | Msa0975960 | 0.812861 | 3.425455e-51 | -8.615850e-47 |
| Msa0082520 | Msa1075090 | 0.803001 | 4.293766e-49 | -8.615850e-47 |
| Msa0082520 | Msa1136760 | 0.817285 | 3.568975e-52 | -8.615850e-47 |
| Msa0082520 | Msa1368420 | 0.808948 | 2.410165e-50 | -8.615850e-47 |
| Msa0082520 | Msa1383220 | 0.806194 | 9.259728e-50 | -8.615850e-47 |
| Msa0082520 | Msa1398140 | 0.807619 | 4.626056e-50 | -8.615850e-47 |
| Msa0082520 | Msa1433360 | 0.807429 | 5.078055e-50 | -8.615850e-47 |
| Msa0082520 | Msa1455200 | 0.806117 | 9.613205e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082520 | MtrunA17_Chr1g0185611 | 89.899 | 198 | 13 | 2 | 1 | 197 | 1 | 192 | 1.08e-128 | 359 |
| Msa0082520 | MtrunA17_Chr7g0240771 | 34.959 | 123 | 64 | 4 | 85 | 197 | 274 | 390 | 3.98e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082520 | AT4G02830.2 | 34.872 | 195 | 101 | 11 | 12 | 197 | 5 | 182 | 4.29e-17 | 75.9 |
| Msa0082520 | AT4G02830.1 | 42.609 | 115 | 51 | 5 | 85 | 197 | 83 | 184 | 8.54e-17 | 75.1 |
| Msa0082520 | AT4G02830.3 | 55.556 | 63 | 25 | 2 | 85 | 146 | 83 | 143 | 6.57e-14 | 67.0 |
Find 48 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCCACGGTTCGCAAGTTT+TGG | 0.289674 | 1_2:-61367830 | None:intergenic |
| TTGTTTACCCTCTTATGTTC+TGG | 0.328861 | 1_2:+61367462 | Msa0082520:CDS |
| CTACTAGCTAGCTCTTCATT+TGG | 0.355880 | 1_2:+61368854 | Msa0082520:three_prime_UTR |
| AGCTAGTAAGTCCATTCCTT+TGG | 0.376321 | 1_2:-61368833 | None:intergenic |
| TACTAGCTAGCTCTTCATTT+GGG | 0.381351 | 1_2:+61368855 | Msa0082520:three_prime_UTR |
| AATATTAATGTGCATGCATT+AGG | 0.381358 | 1_2:+61368495 | Msa0082520:CDS |
| CAGCAGCATCACAAATCATT+TGG | 0.391782 | 1_2:+61367654 | Msa0082520:CDS |
| GCGAACCGTGGCATTGGAAA+TGG | 0.411841 | 1_2:+61367839 | Msa0082520:CDS |
| AGCCATGGATCGTGCGGTAC+TGG | 0.416792 | 1_2:+61367887 | Msa0082520:CDS |
| GGTGATGATGCAATATTTGT+TGG | 0.419116 | 1_2:-61367629 | None:intergenic |
| AAACATGATTGAGACCTTGC+TGG | 0.430425 | 1_2:-61368533 | None:intergenic |
| AACTTCGTGTCTGCTCTTTG+AGG | 0.441594 | 1_2:-61367920 | None:intergenic |
| GCTCATGATGATTGTGAAGT+TGG | 0.449922 | 1_2:+61367421 | Msa0082520:CDS |
| ACTCGGGCGGGAAGGAGGAC+AGG | 0.461569 | 1_2:-61368459 | None:intergenic |
| TACCTCGTCCAGAACATAAG+AGG | 0.467252 | 1_2:-61367470 | None:intergenic |
| AAACTTGCGAACCGTGGCAT+TGG | 0.469865 | 1_2:+61367833 | Msa0082520:CDS |
| GGATATTTCTTCCAAAGGAA+TGG | 0.492493 | 1_2:+61368822 | Msa0082520:CDS |
| CAGCACTCAAAATCCATGTC+AGG | 0.506647 | 1_2:+61367791 | Msa0082520:intron |
| CGCCAGTACCGCACGATCCA+TGG | 0.512478 | 1_2:-61367889 | None:intergenic |
| GTGTGCCCTTCACCACGTCT+AGG | 0.518711 | 1_2:-61368716 | None:intergenic |
| ATGATTTGTGATGCTGCTGC+TGG | 0.519374 | 1_2:-61367650 | None:intergenic |
| TCAAGGGATATTTCTTCCAA+AGG | 0.525267 | 1_2:+61368817 | Msa0082520:CDS |
| TCTCAGAATCAATGTTCTCA+AGG | 0.529569 | 1_2:+61368800 | Msa0082520:CDS |
| TATTTAGAGCTTGAACAACT+CGG | 0.547571 | 1_2:-61368476 | None:intergenic |
| TACAAACCTAGACGTGGTGA+AGG | 0.550393 | 1_2:+61368710 | Msa0082520:CDS |
| TTGAGAGGGACACAAATTGA+AGG | 0.551770 | 1_2:+61368897 | Msa0082520:three_prime_UTR |
| AGAGAACAATTATATTTGAG+AGG | 0.558837 | 1_2:+61368882 | Msa0082520:three_prime_UTR |
| CTTGAACAACTCGGGCGGGA+AGG | 0.560524 | 1_2:-61368467 | None:intergenic |
| AGAGCTTGAACAACTCGGGC+GGG | 0.561817 | 1_2:-61368471 | None:intergenic |
| AACATGATTGAGACCTTGCT+GGG | 0.563709 | 1_2:-61368532 | None:intergenic |
| ATTTAGAGCTTGAACAACTC+GGG | 0.565991 | 1_2:-61368475 | None:intergenic |
| ATGTAGTATGCATAAAAGCT+AGG | 0.568939 | 1_2:+61368967 | Msa0082520:three_prime_UTR |
| ACCCTCTTATGTTCTGGACG+AGG | 0.572361 | 1_2:+61367468 | Msa0082520:CDS |
| GCATTCCATTTCCAATGCCA+CGG | 0.577091 | 1_2:-61367844 | None:intergenic |
| ATGAGCAATAGTAGTGGCCA+TGG | 0.578077 | 1_2:-61367404 | None:intergenic |
| ATTTGGAGAATCACAATCAC+AGG | 0.578607 | 1_2:+61367671 | Msa0082520:CDS |
| GAGAACAATTATATTTGAGA+GGG | 0.581812 | 1_2:+61368883 | Msa0082520:three_prime_UTR |
| CTCAGAATCAATGTTCTCAA+GGG | 0.590442 | 1_2:+61368801 | Msa0082520:CDS |
| GAACAACTCGGGCGGGAAGG+AGG | 0.604716 | 1_2:-61368464 | None:intergenic |
| ACCTCGTCCAGAACATAAGA+GGG | 0.644914 | 1_2:-61367469 | None:intergenic |
| ACAAACCTAGACGTGGTGAA+GGG | 0.647783 | 1_2:+61368711 | Msa0082520:CDS |
| TAGAGCTTGAACAACTCGGG+CGG | 0.649308 | 1_2:-61368472 | None:intergenic |
| TTGGTACAAAGATCCTGACA+TGG | 0.656996 | 1_2:-61367804 | None:intergenic |
| AAGCCAAAACTTGCGAACCG+TGG | 0.669362 | 1_2:+61367827 | Msa0082520:CDS |
| ATCATCATGAGCAATAGTAG+TGG | 0.670643 | 1_2:-61367410 | None:intergenic |
| GAATCAAGCCATGGATCGTG+CGG | 0.670771 | 1_2:+61367881 | Msa0082520:CDS |
| GTGCAGATATCACCCCAGCA+AGG | 0.682483 | 1_2:+61368519 | Msa0082520:CDS |
| ACATGATTGAGACCTTGCTG+GGG | 0.788840 | 1_2:-61368531 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAAATTTTAAATAGG+AGG | - | chr1_2:61367728-61367747 | None:intergenic | 10.0% |
| !!! | AAAATAAAATTTTAAATAGG+AGG | - | chr1_2:61367728-61367747 | None:intergenic | 10.0% |
| !! | ATATATAATTTCCTTTCTTT+AGG | + | chr1_2:61367572-61367591 | Msa0082520:intron | 15.0% |
| !!! | TTGATCATTTTTGAAAAAAT+TGG | + | chr1_2:61367978-61367997 | Msa0082520:intron | 15.0% |
| !! | TTAGTTAGAATTTCAAAAAA+TGG | + | chr1_2:61368609-61368628 | Msa0082520:intron | 15.0% |
| !! | AATTATCTTTATAGACTTAA+GGG | - | chr1_2:61368657-61368676 | None:intergenic | 15.0% |
| !! | ATATATAATTTCCTTTCTTT+AGG | + | chr1_2:61367572-61367591 | Msa0082520:intron | 15.0% |
| !!! | TTGATCATTTTTGAAAAAAT+TGG | + | chr1_2:61367978-61367997 | Msa0082520:intron | 15.0% |
| !! | TTAGTTAGAATTTCAAAAAA+TGG | + | chr1_2:61368609-61368628 | Msa0082520:intron | 15.0% |
| !! | AATTATCTTTATAGACTTAA+GGG | - | chr1_2:61368657-61368676 | None:intergenic | 15.0% |
| !! | CAATTATCTTTATAGACTTA+AGG | - | chr1_2:61368658-61368677 | None:intergenic | 20.0% |
| !! | CAATTATCTTTATAGACTTA+AGG | - | chr1_2:61368658-61368677 | None:intergenic | 20.0% |
| ! | TTCATCAAATGTTAGCTATT+AGG | + | chr1_2:61367509-61367528 | Msa0082520:intron | 25.0% |
| ! | TTTCATACATACCTAAAGAA+AGG | - | chr1_2:61367586-61367605 | None:intergenic | 25.0% |
| !!! | ATATTTTTAGAATCAAGCCA+TGG | + | chr1_2:61367872-61367891 | Msa0082520:CDS | 25.0% |
| ! | ATTGGAAGTTAATTCTTACA+TGG | + | chr1_2:61367996-61368015 | Msa0082520:intron | 25.0% |
| ! | ATTACATCACATAGTTACTA+TGG | + | chr1_2:61368074-61368093 | Msa0082520:intron | 25.0% |
| !!! | TTTCAATCGTTGATTTAAAC+TGG | - | chr1_2:61368130-61368149 | None:intergenic | 25.0% |
| ! | AATATTAATGTGCATGCATT+AGG | + | chr1_2:61368495-61368514 | Msa0082520:CDS | 25.0% |
| ! | AAGAAAAAAGATCAGAAAGA+TGG | + | chr1_2:61368755-61368774 | Msa0082520:CDS | 25.0% |
| ! | AGAGAACAATTATATTTGAG+AGG | + | chr1_2:61368882-61368901 | Msa0082520:three_prime_UTR | 25.0% |
| ! | GAGAACAATTATATTTGAGA+GGG | + | chr1_2:61368883-61368902 | Msa0082520:three_prime_UTR | 25.0% |
| ! | TTCATCAAATGTTAGCTATT+AGG | + | chr1_2:61367509-61367528 | Msa0082520:intron | 25.0% |
| ! | TTTCATACATACCTAAAGAA+AGG | - | chr1_2:61367586-61367605 | None:intergenic | 25.0% |
| !!! | ATATTTTTAGAATCAAGCCA+TGG | + | chr1_2:61367872-61367891 | Msa0082520:CDS | 25.0% |
| ! | ATTGGAAGTTAATTCTTACA+TGG | + | chr1_2:61367996-61368015 | Msa0082520:intron | 25.0% |
| ! | ATTACATCACATAGTTACTA+TGG | + | chr1_2:61368074-61368093 | Msa0082520:intron | 25.0% |
| !!! | TTTCAATCGTTGATTTAAAC+TGG | - | chr1_2:61368130-61368149 | None:intergenic | 25.0% |
| ! | AATATTAATGTGCATGCATT+AGG | + | chr1_2:61368495-61368514 | Msa0082520:CDS | 25.0% |
| ! | AAGAAAAAAGATCAGAAAGA+TGG | + | chr1_2:61368755-61368774 | Msa0082520:CDS | 25.0% |
| ! | AGAGAACAATTATATTTGAG+AGG | + | chr1_2:61368882-61368901 | Msa0082520:three_prime_UTR | 25.0% |
| ! | GAGAACAATTATATTTGAGA+GGG | + | chr1_2:61368883-61368902 | Msa0082520:three_prime_UTR | 25.0% |
| TATGAAAAACCAACACCAAA+AGG | + | chr1_2:61367599-61367618 | Msa0082520:CDS | 30.0% | |
| !!! | TTTGTTGGTTTTGAACCTTT+TGG | - | chr1_2:61367617-61367636 | None:intergenic | 30.0% |
| !! | AATCACAGGTACTGTTTTAT+CGG | + | chr1_2:61367685-61367704 | Msa0082520:intron | 30.0% |
| ! | TTTTCTGTCGTAGTTAATCT+CGG | - | chr1_2:61368211-61368230 | None:intergenic | 30.0% |
| TGAATAATTGTGCGTATGTT+TGG | + | chr1_2:61368308-61368327 | Msa0082520:intron | 30.0% | |
| ! | TATTTAGAGCTTGAACAACT+CGG | - | chr1_2:61368479-61368498 | None:intergenic | 30.0% |
| AATTGACATGTCCTTTCATT+TGG | + | chr1_2:61368673-61368692 | Msa0082520:intron | 30.0% | |
| ! | AGCTTTTATGCATACTACAT+AGG | - | chr1_2:61368967-61368986 | None:intergenic | 30.0% |
| ATGTAGTATGCATAAAAGCT+AGG | + | chr1_2:61368967-61368986 | Msa0082520:three_prime_UTR | 30.0% | |
| TATGAAAAACCAACACCAAA+AGG | + | chr1_2:61367599-61367618 | Msa0082520:CDS | 30.0% | |
| !!! | TTTGTTGGTTTTGAACCTTT+TGG | - | chr1_2:61367617-61367636 | None:intergenic | 30.0% |
| !! | AATCACAGGTACTGTTTTAT+CGG | + | chr1_2:61367685-61367704 | Msa0082520:intron | 30.0% |
| ! | TTTTCTGTCGTAGTTAATCT+CGG | - | chr1_2:61368211-61368230 | None:intergenic | 30.0% |
| TGAATAATTGTGCGTATGTT+TGG | + | chr1_2:61368308-61368327 | Msa0082520:intron | 30.0% | |
| ! | TATTTAGAGCTTGAACAACT+CGG | - | chr1_2:61368479-61368498 | None:intergenic | 30.0% |
| AATTGACATGTCCTTTCATT+TGG | + | chr1_2:61368673-61368692 | Msa0082520:intron | 30.0% | |
| ! | AGCTTTTATGCATACTACAT+AGG | - | chr1_2:61368967-61368986 | None:intergenic | 30.0% |
| ATGTAGTATGCATAAAAGCT+AGG | + | chr1_2:61368967-61368986 | Msa0082520:three_prime_UTR | 30.0% | |
| ATCATCATGAGCAATAGTAG+TGG | - | chr1_2:61367413-61367432 | None:intergenic | 35.0% | |
| !!! | TGTGAAGTTGGTTTTGAAGA+AGG | + | chr1_2:61367433-61367452 | Msa0082520:CDS | 35.0% |
| TTGTTTACCCTCTTATGTTC+TGG | + | chr1_2:61367462-61367481 | Msa0082520:CDS | 35.0% | |
| ! | GGTGATGATGCAATATTTGT+TGG | - | chr1_2:61367632-61367651 | None:intergenic | 35.0% |
| ATTTGGAGAATCACAATCAC+AGG | + | chr1_2:61367671-61367690 | Msa0082520:CDS | 35.0% | |
| !!! | TATCAACCTGGCTTTTTTCT+TGG | - | chr1_2:61367950-61367969 | None:intergenic | 35.0% |
| TCAAGCAACATATATCAACC+TGG | - | chr1_2:61367962-61367981 | None:intergenic | 35.0% | |
| !! | ATCGTTGATTTAAACTGGAC+TGG | - | chr1_2:61368125-61368144 | None:intergenic | 35.0% |
| GCATTGGAACGTGAAAAAAT+TGG | - | chr1_2:61368347-61368366 | None:intergenic | 35.0% | |
| AAATCGCGAAAATGTTGCAT+TGG | - | chr1_2:61368363-61368382 | None:intergenic | 35.0% | |
| ! | ATTTAGAGCTTGAACAACTC+GGG | - | chr1_2:61368478-61368497 | None:intergenic | 35.0% |
| TTGAACTGCAACCAAATGAA+AGG | - | chr1_2:61368687-61368706 | None:intergenic | 35.0% | |
| CAAAAATACAAACCTAGACG+TGG | + | chr1_2:61368704-61368723 | Msa0082520:CDS | 35.0% | |
| TCTCAGAATCAATGTTCTCA+AGG | + | chr1_2:61368800-61368819 | Msa0082520:CDS | 35.0% | |
| CTCAGAATCAATGTTCTCAA+GGG | + | chr1_2:61368801-61368820 | Msa0082520:CDS | 35.0% | |
| TCAAGGGATATTTCTTCCAA+AGG | + | chr1_2:61368817-61368836 | Msa0082520:CDS | 35.0% | |
| GGATATTTCTTCCAAAGGAA+TGG | + | chr1_2:61368822-61368841 | Msa0082520:CDS | 35.0% | |
| ! | TACTAGCTAGCTCTTCATTT+GGG | + | chr1_2:61368855-61368874 | Msa0082520:three_prime_UTR | 35.0% |
| ATCATCATGAGCAATAGTAG+TGG | - | chr1_2:61367413-61367432 | None:intergenic | 35.0% | |
| !!! | TGTGAAGTTGGTTTTGAAGA+AGG | + | chr1_2:61367433-61367452 | Msa0082520:CDS | 35.0% |
| TTGTTTACCCTCTTATGTTC+TGG | + | chr1_2:61367462-61367481 | Msa0082520:CDS | 35.0% | |
| ! | GGTGATGATGCAATATTTGT+TGG | - | chr1_2:61367632-61367651 | None:intergenic | 35.0% |
| ATTTGGAGAATCACAATCAC+AGG | + | chr1_2:61367671-61367690 | Msa0082520:CDS | 35.0% | |
| !!! | TATCAACCTGGCTTTTTTCT+TGG | - | chr1_2:61367950-61367969 | None:intergenic | 35.0% |
| TCAAGCAACATATATCAACC+TGG | - | chr1_2:61367962-61367981 | None:intergenic | 35.0% | |
| !! | ATCGTTGATTTAAACTGGAC+TGG | - | chr1_2:61368125-61368144 | None:intergenic | 35.0% |
| GCATTGGAACGTGAAAAAAT+TGG | - | chr1_2:61368347-61368366 | None:intergenic | 35.0% | |
| AAATCGCGAAAATGTTGCAT+TGG | - | chr1_2:61368363-61368382 | None:intergenic | 35.0% | |
| ! | ATTTAGAGCTTGAACAACTC+GGG | - | chr1_2:61368478-61368497 | None:intergenic | 35.0% |
| TTGAACTGCAACCAAATGAA+AGG | - | chr1_2:61368687-61368706 | None:intergenic | 35.0% | |
| CAAAAATACAAACCTAGACG+TGG | + | chr1_2:61368704-61368723 | Msa0082520:CDS | 35.0% | |
| TCTCAGAATCAATGTTCTCA+AGG | + | chr1_2:61368800-61368819 | Msa0082520:CDS | 35.0% | |
| CTCAGAATCAATGTTCTCAA+GGG | + | chr1_2:61368801-61368820 | Msa0082520:CDS | 35.0% | |
| TCAAGGGATATTTCTTCCAA+AGG | + | chr1_2:61368817-61368836 | Msa0082520:CDS | 35.0% | |
| GGATATTTCTTCCAAAGGAA+TGG | + | chr1_2:61368822-61368841 | Msa0082520:CDS | 35.0% | |
| ! | TACTAGCTAGCTCTTCATTT+GGG | + | chr1_2:61368855-61368874 | Msa0082520:three_prime_UTR | 35.0% |
| GCTCATGATGATTGTGAAGT+TGG | + | chr1_2:61367421-61367440 | Msa0082520:CDS | 40.0% | |
| !!! | GGTTTTGAACCTTTTGGTGT+TGG | - | chr1_2:61367611-61367630 | None:intergenic | 40.0% |
| CAGCAGCATCACAAATCATT+TGG | + | chr1_2:61367654-61367673 | Msa0082520:CDS | 40.0% | |
| TTGGTACAAAGATCCTGACA+TGG | - | chr1_2:61367807-61367826 | None:intergenic | 40.0% | |
| TTCCAACCAAGAAAAAAGCC+AGG | + | chr1_2:61367941-61367960 | Msa0082520:CDS | 40.0% | |
| !!! | AACCTGGCTTTTTTCTTGGT+TGG | - | chr1_2:61367946-61367965 | None:intergenic | 40.0% |
| !! | TGATTTAAACTGGACTGGTC+AGG | - | chr1_2:61368120-61368139 | None:intergenic | 40.0% |
| TGCACAAGCTGCAAAACATA+AGG | - | chr1_2:61368439-61368458 | None:intergenic | 40.0% | |
| AACATGATTGAGACCTTGCT+GGG | - | chr1_2:61368535-61368554 | None:intergenic | 40.0% | |
| AAACATGATTGAGACCTTGC+TGG | - | chr1_2:61368536-61368555 | None:intergenic | 40.0% | |
| AGCTAGTAAGTCCATTCCTT+TGG | - | chr1_2:61368836-61368855 | None:intergenic | 40.0% | |
| ! | CTACTAGCTAGCTCTTCATT+TGG | + | chr1_2:61368854-61368873 | Msa0082520:three_prime_UTR | 40.0% |
| TTGAGAGGGACACAAATTGA+AGG | + | chr1_2:61368897-61368916 | Msa0082520:three_prime_UTR | 40.0% | |
| GCTCATGATGATTGTGAAGT+TGG | + | chr1_2:61367421-61367440 | Msa0082520:CDS | 40.0% | |
| !!! | GGTTTTGAACCTTTTGGTGT+TGG | - | chr1_2:61367611-61367630 | None:intergenic | 40.0% |
| CAGCAGCATCACAAATCATT+TGG | + | chr1_2:61367654-61367673 | Msa0082520:CDS | 40.0% | |
| TTGGTACAAAGATCCTGACA+TGG | - | chr1_2:61367807-61367826 | None:intergenic | 40.0% | |
| TTCCAACCAAGAAAAAAGCC+AGG | + | chr1_2:61367941-61367960 | Msa0082520:CDS | 40.0% | |
| !!! | AACCTGGCTTTTTTCTTGGT+TGG | - | chr1_2:61367946-61367965 | None:intergenic | 40.0% |
| !! | TGATTTAAACTGGACTGGTC+AGG | - | chr1_2:61368120-61368139 | None:intergenic | 40.0% |
| TGCACAAGCTGCAAAACATA+AGG | - | chr1_2:61368439-61368458 | None:intergenic | 40.0% | |
| AACATGATTGAGACCTTGCT+GGG | - | chr1_2:61368535-61368554 | None:intergenic | 40.0% | |
| AAACATGATTGAGACCTTGC+TGG | - | chr1_2:61368536-61368555 | None:intergenic | 40.0% | |
| AGCTAGTAAGTCCATTCCTT+TGG | - | chr1_2:61368836-61368855 | None:intergenic | 40.0% | |
| ! | CTACTAGCTAGCTCTTCATT+TGG | + | chr1_2:61368854-61368873 | Msa0082520:three_prime_UTR | 40.0% |
| TTGAGAGGGACACAAATTGA+AGG | + | chr1_2:61368897-61368916 | Msa0082520:three_prime_UTR | 40.0% | |
| ACCTCGTCCAGAACATAAGA+GGG | - | chr1_2:61367472-61367491 | None:intergenic | 45.0% | |
| TACCTCGTCCAGAACATAAG+AGG | - | chr1_2:61367473-61367492 | None:intergenic | 45.0% | |
| ! | ATGATTTGTGATGCTGCTGC+TGG | - | chr1_2:61367653-61367672 | None:intergenic | 45.0% |
| !! | TGGATTTTGAGTGCTGCACA+AGG | - | chr1_2:61367787-61367806 | None:intergenic | 45.0% |
| CAGCACTCAAAATCCATGTC+AGG | + | chr1_2:61367791-61367810 | Msa0082520:intron | 45.0% | |
| !!! | GGTTCGCAAGTTTTGGCTTT+TGG | - | chr1_2:61367826-61367845 | None:intergenic | 45.0% |
| GCATTCCATTTCCAATGCCA+CGG | - | chr1_2:61367847-61367866 | None:intergenic | 45.0% | |
| AACTTCGTGTCTGCTCTTTG+AGG | - | chr1_2:61367923-61367942 | None:intergenic | 45.0% | |
| ACATGATTGAGACCTTGCTG+GGG | - | chr1_2:61368534-61368553 | None:intergenic | 45.0% | |
| TACAAACCTAGACGTGGTGA+AGG | + | chr1_2:61368710-61368729 | Msa0082520:CDS | 45.0% | |
| ACAAACCTAGACGTGGTGAA+GGG | + | chr1_2:61368711-61368730 | Msa0082520:CDS | 45.0% | |
| ACCTCGTCCAGAACATAAGA+GGG | - | chr1_2:61367472-61367491 | None:intergenic | 45.0% | |
| TACCTCGTCCAGAACATAAG+AGG | - | chr1_2:61367473-61367492 | None:intergenic | 45.0% | |
| ! | ATGATTTGTGATGCTGCTGC+TGG | - | chr1_2:61367653-61367672 | None:intergenic | 45.0% |
| !! | TGGATTTTGAGTGCTGCACA+AGG | - | chr1_2:61367787-61367806 | None:intergenic | 45.0% |
| CAGCACTCAAAATCCATGTC+AGG | + | chr1_2:61367791-61367810 | Msa0082520:intron | 45.0% | |
| !!! | GGTTCGCAAGTTTTGGCTTT+TGG | - | chr1_2:61367826-61367845 | None:intergenic | 45.0% |
| GCATTCCATTTCCAATGCCA+CGG | - | chr1_2:61367847-61367866 | None:intergenic | 45.0% | |
| AACTTCGTGTCTGCTCTTTG+AGG | - | chr1_2:61367923-61367942 | None:intergenic | 45.0% | |
| ACATGATTGAGACCTTGCTG+GGG | - | chr1_2:61368534-61368553 | None:intergenic | 45.0% | |
| TACAAACCTAGACGTGGTGA+AGG | + | chr1_2:61368710-61368729 | Msa0082520:CDS | 45.0% | |
| ACAAACCTAGACGTGGTGAA+GGG | + | chr1_2:61368711-61368730 | Msa0082520:CDS | 45.0% | |
| !!! | ATGAAAATAAAATTTTAAAT+AGG | - | chr1_2:61367731-61367750 | None:intergenic | 5.0% |
| !!! | ATGAAAATAAAATTTTAAAT+AGG | - | chr1_2:61367731-61367750 | None:intergenic | 5.0% |
| ! | ACCCTCTTATGTTCTGGACG+AGG | + | chr1_2:61367468-61367487 | Msa0082520:CDS | 50.0% |
| AAGCCAAAACTTGCGAACCG+TGG | + | chr1_2:61367827-61367846 | Msa0082520:CDS | 50.0% | |
| ! | ATGCCACGGTTCGCAAGTTT+TGG | - | chr1_2:61367833-61367852 | None:intergenic | 50.0% |
| AAACTTGCGAACCGTGGCAT+TGG | + | chr1_2:61367833-61367852 | Msa0082520:CDS | 50.0% | |
| GAATCAAGCCATGGATCGTG+CGG | + | chr1_2:61367881-61367900 | Msa0082520:CDS | 50.0% | |
| TAGAGCTTGAACAACTCGGG+CGG | - | chr1_2:61368475-61368494 | None:intergenic | 50.0% | |
| ! | ACCCTCTTATGTTCTGGACG+AGG | + | chr1_2:61367468-61367487 | Msa0082520:CDS | 50.0% |
| AAGCCAAAACTTGCGAACCG+TGG | + | chr1_2:61367827-61367846 | Msa0082520:CDS | 50.0% | |
| ! | ATGCCACGGTTCGCAAGTTT+TGG | - | chr1_2:61367833-61367852 | None:intergenic | 50.0% |
| AAACTTGCGAACCGTGGCAT+TGG | + | chr1_2:61367833-61367852 | Msa0082520:CDS | 50.0% | |
| GAATCAAGCCATGGATCGTG+CGG | + | chr1_2:61367881-61367900 | Msa0082520:CDS | 50.0% | |
| TAGAGCTTGAACAACTCGGG+CGG | - | chr1_2:61368475-61368494 | None:intergenic | 50.0% | |
| ! | GCGAACCGTGGCATTGGAAA+TGG | + | chr1_2:61367839-61367858 | Msa0082520:CDS | 55.0% |
| AGAGCTTGAACAACTCGGGC+GGG | - | chr1_2:61368474-61368493 | None:intergenic | 55.0% | |
| GTGCAGATATCACCCCAGCA+AGG | + | chr1_2:61368519-61368538 | Msa0082520:CDS | 55.0% | |
| ! | GCGAACCGTGGCATTGGAAA+TGG | + | chr1_2:61367839-61367858 | Msa0082520:CDS | 55.0% |
| AGAGCTTGAACAACTCGGGC+GGG | - | chr1_2:61368474-61368493 | None:intergenic | 55.0% | |
| GTGCAGATATCACCCCAGCA+AGG | + | chr1_2:61368519-61368538 | Msa0082520:CDS | 55.0% | |
| AGCCATGGATCGTGCGGTAC+TGG | + | chr1_2:61367887-61367906 | Msa0082520:CDS | 60.0% | |
| CTTGAACAACTCGGGCGGGA+AGG | - | chr1_2:61368470-61368489 | None:intergenic | 60.0% | |
| GTGTGCCCTTCACCACGTCT+AGG | - | chr1_2:61368719-61368738 | None:intergenic | 60.0% | |
| AGCCATGGATCGTGCGGTAC+TGG | + | chr1_2:61367887-61367906 | Msa0082520:CDS | 60.0% | |
| CTTGAACAACTCGGGCGGGA+AGG | - | chr1_2:61368470-61368489 | None:intergenic | 60.0% | |
| GTGTGCCCTTCACCACGTCT+AGG | - | chr1_2:61368719-61368738 | None:intergenic | 60.0% | |
| CGCCAGTACCGCACGATCCA+TGG | - | chr1_2:61367892-61367911 | None:intergenic | 65.0% | |
| GAACAACTCGGGCGGGAAGG+AGG | - | chr1_2:61368467-61368486 | None:intergenic | 65.0% | |
| CGCCAGTACCGCACGATCCA+TGG | - | chr1_2:61367892-61367911 | None:intergenic | 65.0% | |
| GAACAACTCGGGCGGGAAGG+AGG | - | chr1_2:61368467-61368486 | None:intergenic | 65.0% | |
| ACTCGGGCGGGAAGGAGGAC+AGG | - | chr1_2:61368462-61368481 | None:intergenic | 70.0% | |
| ACTCGGGCGGGAAGGAGGAC+AGG | - | chr1_2:61368462-61368481 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 61367406 | 61369005 | 61367406 | ID=Msa0082520;Name=Msa0082520 |
| chr1_2 | mRNA | 61367406 | 61369005 | 61367406 | ID=Msa0082520-mRNA-1;Parent=Msa0082520;Name=Msa0082520-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.4|1|1|1|5|152|197 |
| chr1_2 | exon | 61367406 | 61367489 | 61367406 | ID=Msa0082520-mRNA-1:exon:20248;Parent=Msa0082520-mRNA-1 |
| chr1_2 | exon | 61367594 | 61367692 | 61367594 | ID=Msa0082520-mRNA-1:exon:20249;Parent=Msa0082520-mRNA-1 |
| chr1_2 | exon | 61367794 | 61367962 | 61367794 | ID=Msa0082520-mRNA-1:exon:20250;Parent=Msa0082520-mRNA-1 |
| chr1_2 | exon | 61368451 | 61368540 | 61368451 | ID=Msa0082520-mRNA-1:exon:20251;Parent=Msa0082520-mRNA-1 |
| chr1_2 | exon | 61368702 | 61369005 | 61368702 | ID=Msa0082520-mRNA-1:exon:20252;Parent=Msa0082520-mRNA-1 |
| chr1_2 | CDS | 61367406 | 61367489 | 61367406 | ID=Msa0082520-mRNA-1:cds;Parent=Msa0082520-mRNA-1 |
| chr1_2 | CDS | 61367594 | 61367692 | 61367594 | ID=Msa0082520-mRNA-1:cds;Parent=Msa0082520-mRNA-1 |
| chr1_2 | CDS | 61367794 | 61367962 | 61367794 | ID=Msa0082520-mRNA-1:cds;Parent=Msa0082520-mRNA-1 |
| chr1_2 | CDS | 61368451 | 61368540 | 61368451 | ID=Msa0082520-mRNA-1:cds;Parent=Msa0082520-mRNA-1 |
| chr1_2 | CDS | 61368702 | 61368853 | 61368702 | ID=Msa0082520-mRNA-1:cds;Parent=Msa0082520-mRNA-1 |
| chr1_2 | three_prime_UTR | 61368854 | 61369005 | 61368854 | ID=Msa0082520-mRNA-1:three_prime_utr;Parent=Msa0082520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
