AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028990 MtrunA17_Chr1g0185621 90.264 606 33 2 1 580 38 643 0.0 1055
Msa0028990 MtrunA17_Chr8g0386921 47.531 162 61 1 1 138 34 195 1.66e-41 158
Msa0028990 MtrunA17_Chr8g0386921 32.155 283 151 8 296 557 307 569 3.11e-26 113
Msa0028990 MtrunA17_Chr3g0131691 36.313 179 105 4 398 573 289 461 2.37e-20 94.4
Msa0028990 MtrunA17_Chr2g0280161 35.032 157 92 3 412 567 177 324 2.40e-19 89.7
Msa0028990 MtrunA17_Chr8g0346151 33.880 183 93 5 399 571 271 435 8.92e-19 89.4
Msa0028990 MtrunA17_Chr8g0366751 33.974 156 100 1 412 564 462 617 2.68e-18 88.6
Msa0028990 MtrunA17_Chr8g0346161 32.948 173 104 3 399 571 283 443 5.05e-18 87.0
Msa0028990 MtrunA17_Chr2g0307141 33.333 144 84 3 412 553 183 316 6.52e-18 85.9
Msa0028990 MtrunA17_Chr5g0400621 32.121 165 97 3 400 563 144 294 9.64e-18 84.7
Msa0028990 MtrunA17_Chr2g0307131 34.028 144 83 3 412 553 179 312 1.23e-17 84.7
Msa0028990 MtrunA17_Chr4g0054581 32.886 149 91 3 412 558 198 339 2.08e-17 84.3
Msa0028990 MtrunA17_Chr7g0225901 29.448 163 99 4 393 553 73 221 2.68e-17 82.0
Msa0028990 MtrunA17_Chr4g0033291 26.459 257 160 7 307 553 48 285 4.15e-17 82.8
Msa0028990 MtrunA17_Chr5g0400641 28.931 159 100 2 415 568 1 151 4.16e-17 79.0
Msa0028990 MtrunA17_Chr5g0411341 30.675 163 110 1 412 571 493 655 5.01e-17 84.7
Msa0028990 MtrunA17_Chr5g0411341 37.391 115 61 4 1 113 77 182 9.95e-13 71.2
Msa0028990 MtrunA17_Chr5g0400671 34.532 139 80 2 413 551 155 282 1.29e-16 81.3
Msa0028990 MtrunA17_Chr4g0033391 32.639 144 82 3 412 553 147 277 1.43e-16 81.3
Msa0028990 MtrunA17_Chr7g0252041 32.000 175 107 4 409 575 283 453 1.89e-16 82.4
Msa0028990 MtrunA17_Chr4g0049331 29.310 174 113 3 378 551 103 266 3.76e-16 79.7
Msa0028990 MtrunA17_Chr6g0468491 27.136 199 113 5 371 553 88 270 1.22e-15 78.2
Msa0028990 MtrunA17_Chr5g0400661 29.139 151 90 2 412 551 149 293 2.68e-15 77.4
Msa0028990 MtrunA17_Chr4g0002801 28.025 157 102 3 400 553 143 291 2.70e-15 77.4
Msa0028990 MtrunA17_Chr1g0211081 28.061 196 110 5 401 573 311 498 9.20e-15 77.0
Msa0028990 MtrunA17_Chr4g0002781 27.389 157 100 3 400 553 165 310 2.58e-14 74.7
Msa0028990 MtrunA17_Chr7g0260841 52.308 65 31 0 412 476 355 419 2.82e-14 75.5
Msa0028990 MtrunA17_Chr7g0275821 50.704 71 34 1 412 482 252 321 4.09e-14 74.7
Msa0028990 MtrunA17_Chr2g0333621 27.545 167 103 4 394 553 117 272 1.22e-13 72.0
Msa0028990 MtrunA17_Chr4g0054551 61.111 54 21 0 412 465 155 208 1.37e-13 72.0
Msa0028990 MtrunA17_Chr6g0468461 27.461 193 110 4 369 553 122 292 2.01e-13 72.0
Msa0028990 MtrunA17_Chr4g0054571 47.541 61 32 0 412 472 150 210 2.30e-13 71.6
Msa0028990 MtrunA17_Chr4g0054621 29.577 142 85 3 412 553 172 298 4.68e-13 70.9
Msa0028990 MtrunA17_Chr4g0033281 31.944 144 82 3 412 553 153 282 5.12e-13 70.5
Msa0028990 MtrunA17_Chr4g0054561 55.556 54 24 0 412 465 155 208 7.18e-13 70.1
Msa0028990 MtrunA17_Chr4g0052821 30.723 166 84 5 400 551 283 431 1.71e-12 69.7
Msa0028990 MtrunA17_Chr0c01g0489461 28.387 155 96 4 413 552 197 351 3.28e-12 68.6
Msa0028990 MtrunA17_Chr3g0141091 32.544 169 84 6 386 551 149 290 6.88e-12 67.0
Msa0028990 MtrunA17_Chr4g0052841 30.435 161 92 5 401 551 283 433 8.39e-12 67.8
Msa0028990 MtrunA17_Chr2g0333611 29.577 142 84 4 413 551 46 174 1.18e-11 64.7
Msa0028990 MtrunA17_Chr2g0333641 26.087 161 106 3 394 551 116 266 1.28e-11 65.9
Msa0028990 MtrunA17_Chr8g0336681 26.543 162 95 4 399 551 148 294 2.29e-11 65.5
Msa0028990 MtrunA17_Chr1g0153241 51.786 56 27 0 413 468 96 151 2.63e-11 64.3
Msa0028990 MtrunA17_Chr5g0411331 39.216 102 55 3 1 102 60 154 4.87e-11 63.5
Msa0028990 MtrunA17_Chr5g0426851 25.862 174 112 6 413 573 102 271 4.99e-11 63.9
Msa0028990 MtrunA17_Chr5g0411541 32.258 186 98 5 393 576 141 300 5.10e-11 64.3
Msa0028990 MtrunA17_Chr2g0298751 49.091 55 28 0 403 457 43 97 8.21e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028990 AT5G41315.1 30.551 635 318 17 1 572 42 616 7.35e-71 240
Msa0028990 AT5G41315.3 30.551 635 318 17 1 572 47 621 8.74e-71 240
Msa0028990 AT5G41315.2 30.551 635 318 17 1 572 50 624 9.08e-71 240
Msa0028990 AT4G09820.1 38.225 293 111 8 293 580 271 498 3.93e-46 170
Msa0028990 AT1G63650.3 39.450 218 94 5 1 184 41 254 7.27e-36 142
Msa0028990 AT1G63650.3 29.930 284 152 8 302 572 326 575 1.27e-29 124
Msa0028990 AT1G63650.1 39.450 218 94 5 1 184 41 254 7.27e-36 142
Msa0028990 AT1G63650.1 29.930 284 152 8 302 572 326 575 1.27e-29 124
Msa0028990 AT1G63650.2 39.450 218 94 5 1 184 41 254 7.27e-36 142
Msa0028990 AT1G63650.2 29.930 284 152 8 302 572 326 575 1.27e-29 124
Msa0028990 AT1G12860.2 37.195 164 99 2 409 571 264 424 3.39e-22 99.8
Msa0028990 AT1G12860.1 36.810 163 99 2 409 570 264 423 2.09e-21 97.8
Msa0028990 AT4G17880.1 35.000 160 96 2 412 571 416 567 1.83e-19 92.8
Msa0028990 AT4G17880.1 32.203 118 73 2 1 118 102 212 3.75e-12 69.7
Msa0028990 AT4G00480.3 31.395 172 77 4 1 134 51 219 2.64e-19 91.7
Msa0028990 AT4G00480.3 28.082 292 167 11 294 571 241 503 4.65e-17 84.7
Msa0028990 AT4G00480.1 31.395 172 77 4 1 134 51 219 3.31e-19 91.7
Msa0028990 AT4G00480.1 27.645 293 169 11 294 572 241 504 1.32e-16 83.6
Msa0028990 AT4G00480.2 31.395 172 77 4 1 134 51 219 5.83e-19 90.9
Msa0028990 AT4G00480.2 27.645 293 169 11 294 572 241 504 2.95e-16 82.4
Msa0028990 AT3G26744.6 36.145 166 102 3 409 571 304 468 8.43e-19 90.1
Msa0028990 AT3G26744.1 35.294 170 106 3 409 575 304 472 2.39e-18 88.6
Msa0028990 AT3G26744.4 35.294 170 106 3 409 575 304 472 2.39e-18 88.6
Msa0028990 AT3G26744.2 35.294 170 106 3 409 575 304 472 2.39e-18 88.6
Msa0028990 AT5G46760.1 33.750 160 102 2 412 571 415 570 2.45e-18 89.0
Msa0028990 AT1G32640.1 33.951 162 96 3 412 571 452 604 9.04e-18 87.4
Msa0028990 AT1G32640.1 31.356 118 68 3 1 113 100 209 1.34e-11 67.8
Msa0028990 AT4G37850.2 33.133 166 91 5 400 561 145 294 6.26e-17 82.8
Msa0028990 AT4G37850.1 33.133 166 91 5 400 561 145 294 6.26e-17 82.8
Msa0028990 AT2G22760.2 33.533 167 89 5 398 550 96 254 9.94e-15 75.5
Msa0028990 AT2G46510.1 62.963 54 20 0 412 465 395 448 1.01e-14 77.8
Msa0028990 AT2G22760.1 33.533 167 89 5 398 550 96 254 2.29e-14 74.3
Msa0028990 AT1G01260.1 44.578 83 45 1 390 471 410 492 9.40e-14 74.7
Msa0028990 AT1G01260.2 44.578 83 45 1 390 471 410 492 9.40e-14 74.7
Msa0028990 AT1G01260.3 44.578 83 45 1 390 471 410 492 9.40e-14 74.7
Msa0028990 AT4G16430.1 41.748 103 56 3 375 477 286 384 2.36e-13 72.8
Msa0028990 AT4G00870.1 52.459 61 29 0 412 472 249 309 4.09e-13 72.0
Msa0028990 AT2G16910.1 43.902 82 40 1 390 465 286 367 4.42e-13 72.4
Msa0028990 AT4G38070.1 30.405 148 86 4 381 511 54 201 6.36e-13 69.7
Msa0028990 AT2G22770.1 29.299 157 104 2 403 552 123 279 8.35e-13 70.1
Msa0028990 AT5G46830.1 33.742 163 92 6 412 571 343 492 1.75e-12 70.5
Msa0028990 AT5G57150.3 35.714 98 58 1 410 502 53 150 5.97e-12 65.9
Msa0028990 AT2G22750.4 38.384 99 48 3 376 461 105 203 6.78e-12 67.4
Msa0028990 AT5G57150.1 35.714 98 58 1 410 502 52 149 6.92e-12 66.2
Msa0028990 AT5G57150.2 35.714 98 58 1 410 502 53 150 6.93e-12 65.9
Msa0028990 AT2G22750.3 38.384 99 48 3 376 461 105 203 6.96e-12 67.4
Msa0028990 AT5G57150.5 35.714 98 58 1 410 502 52 149 7.01e-12 65.9
Msa0028990 AT2G22750.5 38.384 99 48 3 376 461 101 199 7.53e-12 67.4
Msa0028990 AT2G22750.1 38.384 99 48 3 376 461 77 175 7.90e-12 67.0
Msa0028990 AT2G22750.2 38.384 99 48 3 376 461 77 175 8.04e-12 67.0
Msa0028990 AT4G29930.4 37.895 95 53 2 403 497 45 133 1.02e-11 64.3
Msa0028990 AT4G29930.6 29.333 150 93 3 403 552 45 181 1.26e-11 65.1
Msa0028990 AT4G29930.2 40.845 71 42 0 403 473 45 115 1.32e-11 65.1
Msa0028990 AT4G29930.1 41.176 85 44 2 403 487 45 123 2.20e-11 65.1
Msa0028990 AT4G29930.5 40.845 71 42 0 403 473 45 115 2.39e-11 64.3
Msa0028990 AT5G57150.4 44.118 68 38 0 410 477 53 120 2.58e-11 64.7
Msa0028990 AT4G29930.3 40.845 71 42 0 403 473 45 115 3.43e-11 64.3
Msa0028990 AT4G29930.7 40.845 71 42 0 403 473 45 115 3.43e-11 64.3
Msa0028990 AT3G61950.6 29.730 148 84 4 412 552 128 262 5.33e-11 64.3
Msa0028990 AT3G61950.3 29.730 148 84 4 412 552 179 313 7.78e-11 64.3
Msa0028990 AT1G72210.1 26.190 168 115 3 413 573 127 292 8.05e-11 63.9
Msa0028990 AT3G61950.2 29.730 148 84 4 412 552 128 262 9.53e-11 63.9

Find 165 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTGTGTATGCCCTTCC+TGG 0.213816 1_1:+54108058 None:intergenic
TCACGTGTTTGATGAAATTA+AGG 0.245342 1_1:+54106917 None:intergenic
GAGGTGGTGGAGGTTGTTTC+CGG 0.247905 1_1:+54104920 None:intergenic
ATGGACAAAGCTTCTATATT+AGG 0.273239 1_1:-54104662 Msa0028990:CDS
GGTTCCATTCGTGACGAAAA+TGG 0.283595 1_1:-54104681 Msa0028990:CDS
TTCATCCATGTCGTCTTGAT+TGG 0.294810 1_1:+54106759 None:intergenic
TTGAAATGCCCGATGATATT+CGG 0.302845 1_1:-54106609 Msa0028990:CDS
CATAGAGTTCTCTTAGTTGC+TGG 0.317996 1_1:+54111487 None:intergenic
GAGTTGAGGATTGAGGTTAT+TGG 0.318064 1_1:-54104347 Msa0028990:CDS
GGTTGAGGAAGTTGGGTTAG+AGG 0.318388 1_1:+54106834 None:intergenic
TAGAAGTGGTGTAACGGTTT+TGG 0.322614 1_1:-54104552 Msa0028990:CDS
AGGATTGTTGCTTGATGTTA+TGG 0.331605 1_1:-54104381 Msa0028990:CDS
GTGAAGGAAAATGGTGGAAA+TGG 0.337697 1_1:-54104272 Msa0028990:CDS
AATTATTTGACCCGTCGTTT+GGG 0.340247 1_1:+54106578 None:intergenic
AAATTATTTGACCCGTCGTT+TGG 0.342913 1_1:+54106577 None:intergenic
GTGGAGGTTGTTTCCGGTGG+TGG 0.345072 1_1:+54104926 None:intergenic
TTACCCACGGGTTCTTCAAT+TGG 0.352267 1_1:+54106460 None:intergenic
GGAGGTTGCTGCTTCGGTTC+AGG 0.361607 1_1:-54104456 Msa0028990:CDS
GAGGCATTGGGAGGTGGTGG+AGG 0.370793 1_1:+54104910 None:intergenic
CCCAATCCTCTTTCACCAAC+TGG 0.373009 1_1:-54104976 Msa0028990:CDS
TGAAATGCCCGATGATATTC+GGG 0.373074 1_1:-54106608 Msa0028990:CDS
ATGTGATCGGTTGAGGAAGT+TGG 0.376648 1_1:+54106826 None:intergenic
CCTCCTGCATCATGGGTTTG+AGG 0.379106 1_1:+54104827 None:intergenic
TGAGACGGAGGTTGCTGCTT+CGG 0.382360 1_1:-54104462 Msa0028990:CDS
TTTGAGGAGGCATTGGGAGG+TGG 0.387314 1_1:+54104904 None:intergenic
TGGGGTGATGGATATTATAA+TGG 0.391029 1_1:-54111579 Msa0028990:CDS
AGAACCATTCAGATTCTGTT+AGG 0.392300 1_1:+54111397 None:intergenic
TGTTCCCTTGCCGCGTAACT+TGG 0.394010 1_1:+54104793 None:intergenic
AGGGCTAAGGTGAAGGAAAA+TGG 0.395483 1_1:-54104281 Msa0028990:CDS
TCATCCATGTCGTCTTGATT+GGG 0.400362 1_1:+54106760 None:intergenic
GGAGTAAGTGATGTAGTTGA+TGG 0.405895 1_1:+54105000 None:intergenic
TTACTAGTTGTGAGTAATCA+AGG 0.407904 1_1:-54106538 Msa0028990:CDS
CTCCTGCATCATGGGTTTGA+GGG 0.412275 1_1:+54104828 None:intergenic
CAAGTTCAACTACCATCTTC+AGG 0.412992 1_1:-54106430 Msa0028990:intron
TCAGATTCTGTTAGGTCCTC+AGG 0.415594 1_1:+54111405 None:intergenic
GTGGTGGCAGCGCGTGGAAG+TGG 0.418946 1_1:+54104942 None:intergenic
TGTGATCGGTTGAGGAAGTT+GGG 0.421244 1_1:+54106827 None:intergenic
GGATGTATTTGAGGAGGCAT+TGG 0.421906 1_1:+54104897 None:intergenic
GTTGAGGGAGTTGAGGATTG+AGG 0.424843 1_1:-54104354 Msa0028990:CDS
TGTTCTGAGAGTGCTGGCTT+TGG 0.425999 1_1:+54106862 None:intergenic
GTTCAGTCTTCGCTCAATAA+TGG 0.426434 1_1:-54104323 Msa0028990:CDS
TATTGAGAGTGATGCTTTGT+TGG 0.427384 1_1:-54104426 Msa0028990:CDS
AACCCATCTTTGTGTTGAAT+CGG 0.430063 1_1:+54106483 None:intergenic
AGGGGTCACCTCCTGCATCA+TGG 0.433115 1_1:+54104819 None:intergenic
TCCTCTGCACTAACCTCCAT+TGG 0.444642 1_1:+54111528 None:intergenic
TGATATACAGGATTCTGGTA+TGG 0.452389 1_1:-54111599 None:intergenic
GAGGAGGCATTGGGAGGTGG+TGG 0.453489 1_1:+54104907 None:intergenic
ACTATTAATTTACCTGAAGA+TGG 0.457762 1_1:+54106418 None:intergenic
CCAGTTGGTGAAAGAGGATT+GGG 0.458813 1_1:+54104976 None:intergenic
GCAGCGCGTGGAAGTGGTGG+TGG 0.460378 1_1:+54104948 None:intergenic
TCAGAATCTGAAGACGAAAC+AGG 0.465408 1_1:-54106694 Msa0028990:CDS
TGGTAATGTTGAGGGAGTTG+AGG 0.465496 1_1:-54104361 Msa0028990:CDS
GGGTCCAACAGAGAAGAAAA+AGG 0.466081 1_1:-54104528 Msa0028990:CDS
TCCAGTTGGTGAAAGAGGAT+TGG 0.466348 1_1:+54104975 None:intergenic
CTGTGAAGAGGATGTATTTG+AGG 0.466470 1_1:+54104888 None:intergenic
GTGGTGGTGGTTGGTCCAGT+TGG 0.466928 1_1:+54104961 None:intergenic
GATTGGGATTTGTAGAGGGT+GGG 0.467067 1_1:+54106776 None:intergenic
TCCCTTGCCGCGTAACTTGG+CGG 0.467265 1_1:+54104796 None:intergenic
TGAAGGAAAATGGTGGAAAT+GGG 0.468007 1_1:-54104271 Msa0028990:CDS
GTTGGTCCAGTTGGTGAAAG+AGG 0.468465 1_1:+54104970 None:intergenic
TTCAAGAGCTATTCTAGCTA+AGG 0.470826 1_1:-54107987 Msa0028990:intron
ATTGAGTGTTTGCATAGAGA+AGG 0.471413 1_1:-54104401 Msa0028990:CDS
GATGTATTTGAGGAGGCATT+GGG 0.472065 1_1:+54104898 None:intergenic
CAATGTTCCATTGTGTTGAC+TGG 0.472479 1_1:+54105035 None:intergenic
TGCATCATGGGTTTGAGGGG+AGG 0.472863 1_1:+54104832 None:intergenic
GATATACAGGATTCTGGTAT+GGG 0.472998 1_1:-54111598 None:intergenic
ACACAAAGAGACAGCATGTA+TGG 0.473379 1_1:-54108045 Msa0028990:CDS
CTCCGCCAAGTTACGCGGCA+AGG 0.483118 1_1:-54104798 Msa0028990:CDS
TGATTGGGATTTGTAGAGGG+TGG 0.486223 1_1:+54106775 None:intergenic
AAACCGATTCAACACAAAGA+TGG 0.487993 1_1:-54106486 Msa0028990:CDS
TTGCCGCGTAACTTGGCGGA+GGG 0.490478 1_1:+54104800 None:intergenic
TTCGTCGCTCCGCGAGGACA+TGG 0.493393 1_1:+54104747 None:intergenic
GGGGTCACCTCCTGCATCAT+GGG 0.493705 1_1:+54104820 None:intergenic
TGCCCGATGATATTCGGGTT+GGG 0.493884 1_1:-54106603 Msa0028990:CDS
GTGGCAGCGCGTGGAAGTGG+TGG 0.496583 1_1:+54104945 None:intergenic
TCTGAGAGTGCTGGCTTTGG+CGG 0.496747 1_1:+54106865 None:intergenic
CTTCCACGCGCTGCCACCAC+CGG 0.497913 1_1:-54104939 Msa0028990:CDS
TATATATAAGGTTGCCAGGA+AGG 0.500355 1_1:-54108072 Msa0028990:intron
TCCCCTCAAACCCATGATGC+AGG 0.500911 1_1:-54104830 Msa0028990:CDS
CTCTATGAATCATTGTCTGC+CGG 0.501432 1_1:-54111471 Msa0028990:CDS
AGGATTCTGGTATGGGGTGA+TGG 0.503669 1_1:-54111591 Msa0028990:CDS
TTTCCGGTGGTGGCAGCGCG+TGG 0.505786 1_1:+54104936 None:intergenic
GCACTATATATAAGGTTGCC+AGG 0.507294 1_1:-54108076 Msa0028990:intron
GGTAGGAATGTGATCGGTTG+AGG 0.510024 1_1:+54106819 None:intergenic
CTCAACTGCTTTCGCTCTCG+TGG 0.513238 1_1:+54104481 None:intergenic
TCCTGCATCATGGGTTTGAG+GGG 0.521239 1_1:+54104829 None:intergenic
TGTTGCGGAGTTGAGGGCTA+AGG 0.522771 1_1:-54104294 Msa0028990:CDS
GTTGTTCAGTCTCTATCTGA+CGG 0.523038 1_1:+54104579 None:intergenic
CGCGTGGAAGTGGTGGTGGT+TGG 0.524425 1_1:+54104952 None:intergenic
GTTGAGTGTTCTGAGAGTGC+TGG 0.525057 1_1:+54106856 None:intergenic
TGATGTTATGGTAATGTTGA+GGG 0.530343 1_1:-54104369 Msa0028990:CDS
AGTTGGTGGATTTGTCTCTC+CGG 0.531556 1_1:+54111452 None:intergenic
CTTGCCGCGTAACTTGGCGG+AGG 0.532091 1_1:+54104799 None:intergenic
GTGGTGGAGGTTGTTTCCGG+TGG 0.532605 1_1:+54104923 None:intergenic
TACGAGTCCACGTGTCCTGA+CGG 0.533941 1_1:+54106511 None:intergenic
GACCCAACCCGAATATCATC+GGG 0.537575 1_1:+54106601 None:intergenic
TCCGCCAAGTTACGCGGCAA+GGG 0.540559 1_1:-54104797 Msa0028990:CDS
TCAATCTGCATCAACTCACT+TGG 0.542441 1_1:+54106628 None:intergenic
GCACATGGACGACGAGTTGG+TGG 0.545968 1_1:+54111438 None:intergenic
AGTAATCAAGGAAACCCGTC+AGG 0.550819 1_1:-54106526 Msa0028990:CDS
AACCGATTCAACACAAAGAT+GGG 0.550895 1_1:-54106485 Msa0028990:CDS
GCTTTGGCGGCAAAGAGTGA+TGG 0.555266 1_1:+54106878 None:intergenic
GGACCCAACCCGAATATCAT+CGG 0.555510 1_1:+54106600 None:intergenic
TCTTGATTGGGATTTGTAGA+GGG 0.555864 1_1:+54106772 None:intergenic
GAGAGCGAAAGCAGTTGAGA+CGG 0.556085 1_1:-54104477 Msa0028990:CDS
ATGCCCGATGATATTCGGGT+TGG 0.557418 1_1:-54106604 Msa0028990:CDS
ACGAGTCCACGTGTCCTGAC+GGG 0.558448 1_1:+54106512 None:intergenic
AGCGAAAGCAGTTGAGACGG+AGG 0.558576 1_1:-54104474 Msa0028990:CDS
AGGACCTAACAGAATCTGAA+TGG 0.560680 1_1:-54111401 Msa0028990:CDS
ACTGAACAACAAAGTAGAAG+TGG 0.562802 1_1:-54104566 Msa0028990:CDS
GAAGCACATGGACGACGAGT+TGG 0.564910 1_1:+54111435 None:intergenic
AGACAGCATGTATGGCTCAC+GGG 0.565294 1_1:-54108037 Msa0028990:CDS
GGGTTGGGTCCCCAAACGAC+GGG 0.567731 1_1:-54106588 Msa0028990:CDS
ATATATAAGGTTGCCAGGAA+GGG 0.568067 1_1:-54108071 Msa0028990:intron
TTTGAGGGGAGGTTTCGTCA+TGG 0.570500 1_1:+54104843 None:intergenic
TCGCTCCGCGAGGACATGGT+TGG 0.570780 1_1:+54104751 None:intergenic
GTGAGGATTGTTGAAGAATG+TGG 0.571926 1_1:-54104506 Msa0028990:CDS
AACTTGTAGCGAATTACCCA+CGG 0.574291 1_1:+54106447 None:intergenic
ATGTGCTTCCTTGTCACCTG+AGG 0.574896 1_1:-54111421 Msa0028990:CDS
GTATTTGAGGAGGCATTGGG+AGG 0.574965 1_1:+54104901 None:intergenic
TTGATGTTATGGTAATGTTG+AGG 0.575487 1_1:-54104370 Msa0028990:CDS
GTCTTGATTGGGATTTGTAG+AGG 0.577629 1_1:+54106771 None:intergenic
GGAGTTGAGGGCTAAGGTGA+AGG 0.582755 1_1:-54104288 Msa0028990:CDS
TGTAGAGGGTGGGTCTGCCA+TGG 0.583492 1_1:+54106786 None:intergenic
TGCCGCGTAACTTGGCGGAG+GGG 0.583617 1_1:+54104801 None:intergenic
CTCTACAATAGCTGTCATTG+AGG 0.583824 1_1:+54106651 None:intergenic
CGGGTCAAATAATTTAGACT+CGG 0.585244 1_1:-54106569 Msa0028990:CDS
GTCTGCCATGGTGTACATGA+TGG 0.591460 1_1:+54106798 None:intergenic
GACCCCTCCGCCAAGTTACG+CGG 0.591527 1_1:-54104803 Msa0028990:CDS
GAGACAGCATGTATGGCTCA+CGG 0.591616 1_1:-54108038 Msa0028990:CDS
CGGGTTGGGTCCCCAAACGA+CGG 0.593444 1_1:-54106589 Msa0028990:CDS
ATTATTTGACCCGTCGTTTG+GGG 0.598865 1_1:+54106579 None:intergenic
TGTTAGGTCCTCAGGTGACA+AGG 0.602958 1_1:+54111413 None:intergenic
TTGGCGCTCAGCTCGTCTTG+CGG 0.606797 1_1:+54104770 None:intergenic
ACAAAGTAGAAGTGGTGTAA+CGG 0.607690 1_1:-54104558 Msa0028990:CDS
GGTTCCAATTGAAGAACCCG+TGG 0.613679 1_1:-54106464 Msa0028990:CDS
AGGAAACCCGTCAGGACACG+TGG 0.614112 1_1:-54106518 Msa0028990:CDS
TCGAAAGACAGTGCAACCAA+TGG 0.615013 1_1:-54111544 Msa0028990:CDS
TAAGTGATGTAGTTGATGGA+AGG 0.615344 1_1:+54105004 None:intergenic
ACCAATGGAGGTTAGTGCAG+AGG 0.616075 1_1:-54111529 Msa0028990:CDS
AAAGACAGTGCAACCAATGG+AGG 0.619772 1_1:-54111541 Msa0028990:CDS
ATGGCTCACGGGTGCAAATG+AGG 0.624999 1_1:-54108026 Msa0028990:CDS
TGAGTTACTTACCCTACACC+AGG 0.633728 1_1:+54111345 None:intergenic
CTCTTCTTCGTCGCTCCGCG+AGG 0.637033 1_1:+54104741 None:intergenic
GAAGAGAGAAACTCAACGAG+AGG 0.637311 1_1:-54104724 Msa0028990:CDS
TTCAAAACCAGTCAACACAA+TGG 0.637914 1_1:-54105042 Msa0028990:CDS
AAATCCCAATCAAGACGACA+TGG 0.638757 1_1:-54106764 Msa0028990:CDS
GCCATGGTGTACATGATGGT+AGG 0.641072 1_1:+54106802 None:intergenic
GCTAAGGTGAAGGAAAATGG+TGG 0.644258 1_1:-54104278 Msa0028990:CDS
TCAGGTGACAAGGAAGCACA+TGG 0.644950 1_1:+54111423 None:intergenic
GGAGGTATGGGACTGTGAAG+AGG 0.648050 1_1:+54104876 None:intergenic
CCTCAAACCCATGATGCAGG+AGG 0.651461 1_1:-54104827 Msa0028990:CDS
ATATACAGGATTCTGGTATG+GGG 0.653259 1_1:-54111597 None:intergenic
TGAAGAGGATGTATTTGAGG+AGG 0.655583 1_1:+54104891 None:intergenic
GCTCACGGGTGCAAATGAGG+TGG 0.662470 1_1:-54108023 Msa0028990:CDS
GTTGGTGAAAGAGGATTGGG+AGG 0.663743 1_1:+54104979 None:intergenic
ACTTGTAGCGAATTACCCAC+GGG 0.667266 1_1:+54106448 None:intergenic
CATGATGGTAGGAATGTGAT+CGG 0.682068 1_1:+54106813 None:intergenic
AGACGACATGGATGAAGACG+AGG 0.694697 1_1:-54106752 Msa0028990:CDS
GAGCGCCAACCATGTCCTCG+CGG 0.700534 1_1:-54104756 Msa0028990:CDS
GTTCCAATTGAAGAACCCGT+GGG 0.703614 1_1:-54106463 Msa0028990:CDS
GAATCTGAAGACGAAACAGG+AGG 0.710791 1_1:-54106691 Msa0028990:CDS
TCCTACCATCATGTACACCA+TGG 0.714693 1_1:-54106803 Msa0028990:CDS
CTGTCATTGAGGTTGCACGT+CGG 0.747028 1_1:+54106662 None:intergenic
GTTACTTACCCTACACCAGG+AGG 0.750268 1_1:+54111348 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTATTTTTTGTGTTAA+AGG + chr1_1:54105389-54105408 None:intergenic 10.0%
!!! ATTTTATTTTTGGAAAAAAT+TGG - chr1_1:54105970-54105989 Msa0028990:intron 10.0%
!!! TTTTATTTTTGGAAAAAATT+GGG - chr1_1:54105971-54105990 Msa0028990:intron 10.0%
!! AATAAAGATATAATATTTGA+CGG + chr1_1:54106095-54106114 None:intergenic 10.0%
!! AAATTAAAATTAGATAAAAC+GGG + chr1_1:54108096-54108115 None:intergenic 10.0%
!! CAAATTAAAATTAGATAAAA+CGG + chr1_1:54108097-54108116 None:intergenic 10.0%
!! ATTTAAAAAACATAAGTATA+AGG + chr1_1:54108865-54108884 None:intergenic 10.0%
!!! TTAATTAATTTCTAGATTTT+GGG + chr1_1:54109592-54109611 None:intergenic 10.0%
!!! TTGAGTTTTTTTTTTTTTTT+TGG + chr1_1:54110300-54110319 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGC+TGG - chr1_1:54109667-54109686 Msa0028990:intron 100.0%
!!! AATTAAACTCTAAAAAAATG+TGG + chr1_1:54104652-54104671 None:intergenic 15.0%
!! AAAATTAAACTCATAATATG+AGG + chr1_1:54104887-54104906 None:intergenic 15.0%
!!! ATATTATATGACTTTTTGAT+TGG + chr1_1:54104945-54104964 None:intergenic 15.0%
!!! TATTTTTACATAGACAAAAT+AGG - chr1_1:54105637-54105656 Msa0028990:intron 15.0%
!!! GATTTTCTATTAGATTAATT+TGG + chr1_1:54106016-54106035 None:intergenic 15.0%
!! TATATTACATAACAAATAGA+AGG + chr1_1:54106817-54106836 None:intergenic 15.0%
!!! TTCTATTTGTTATGTAATAT+AGG - chr1_1:54106816-54106835 Msa0028990:CDS 15.0%
!! TATGAAATTATTACTACTTT+AGG - chr1_1:54107004-54107023 Msa0028990:intron 15.0%
!!! GTATTATTTTAATCTTATGT+AGG + chr1_1:54107239-54107258 None:intergenic 15.0%
!! ACATAGTATTTAGTTATATA+TGG - chr1_1:54107263-54107282 Msa0028990:intron 15.0%
!!! TTTTAATATTCTACTCTAAT+AGG - chr1_1:54107301-54107320 Msa0028990:intron 15.0%
!! ATTATATTGCACTATATATA+AGG - chr1_1:54107769-54107788 Msa0028990:intron 15.0%
!! TAAATGATTAAGGTTATTAT+AGG + chr1_1:54108278-54108297 None:intergenic 15.0%
!!! AATGAAGTATTAAATGATTA+AGG + chr1_1:54108288-54108307 None:intergenic 15.0%
!!! CTTAATTAATTTCTAGATTT+TGG + chr1_1:54109593-54109612 None:intergenic 15.0%
!! TATATATATATATAGATCTC+TGG + chr1_1:54109727-54109746 None:intergenic 15.0%
!! GATCTATATATATATATATG+TGG - chr1_1:54109729-54109748 Msa0028990:intron 15.0%
!! AGTAAAACATTTATATAAAG+AGG - chr1_1:54110224-54110243 Msa0028990:intron 15.0%
!!! GTTTTTTTTTTTTTTTTGGA+AGG + chr1_1:54110296-54110315 None:intergenic 15.0%
!!! TTTAAAATCACACATATGAT+TGG + chr1_1:54104700-54104719 None:intergenic 20.0%
!! AGTATTAACAAGATTCAATA+TGG + chr1_1:54104840-54104859 None:intergenic 20.0%
!!! AATTTTGTTACATTTTGACT+TGG - chr1_1:54104901-54104920 Msa0028990:CDS 20.0%
!! TTCAAAATTATTATGCTTCA+TGG + chr1_1:54105111-54105130 None:intergenic 20.0%
!!! AATTTTGAAATAACTTTCGT+AGG - chr1_1:54105122-54105141 Msa0028990:intron 20.0%
!!! TTTTTCTTTAATGCATATCT+TGG - chr1_1:54105151-54105170 Msa0028990:intron 20.0%
!! TATTTATAAGTACTCTAGTT+AGG - chr1_1:54105217-54105236 Msa0028990:intron 20.0%
!!! GTTTTTATGTTGAAAAATAG+AGG - chr1_1:54105676-54105695 Msa0028990:intron 20.0%
!!! TTGCTAGTTTGTAAAAATTA+AGG + chr1_1:54105776-54105795 None:intergenic 20.0%
!!! GCATCTTTTGATTTTATTTT+TGG - chr1_1:54105960-54105979 Msa0028990:intron 20.0%
!!! TTAGATTAATTTGGCAAATT+TGG + chr1_1:54106007-54106026 None:intergenic 20.0%
!!! ATATCATTGCTATCTTTTAA+GGG + chr1_1:54106067-54106086 None:intergenic 20.0%
!!! TATATCATTGCTATCTTTTA+AGG + chr1_1:54106068-54106087 None:intergenic 20.0%
!!! AATTACTACCATTCTATTTT+TGG - chr1_1:54106487-54106506 Msa0028990:CDS 20.0%
!!! ATATGTGAAAAGTTTGAAAT+TGG + chr1_1:54106551-54106570 None:intergenic 20.0%
!!! TTTTTTTTATAGCTTCACAT+AGG - chr1_1:54106605-54106624 Msa0028990:CDS 20.0%
!! AGACTAATCTACATTATTTA+TGG + chr1_1:54106742-54106761 None:intergenic 20.0%
!! AAAAGAACCAACAATTAATT+TGG + chr1_1:54106977-54106996 None:intergenic 20.0%
!!! ATTAATTGTTGGTTCTTTTT+AGG - chr1_1:54106978-54106997 Msa0028990:intron 20.0%
!!! TTAATTGTTGGTTCTTTTTA+GGG - chr1_1:54106979-54106998 Msa0028990:intron 20.0%
!! TTAAAATGATTCATTAAGAG+TGG + chr1_1:54107126-54107145 None:intergenic 20.0%
!! AAGAGTAGTGTTTAATAATA+AGG - chr1_1:54107188-54107207 Msa0028990:intron 20.0%
!! GTATTTAGTTATATATGGTA+CGG - chr1_1:54107268-54107287 Msa0028990:intron 20.0%
!! TACTTCCTATTAGAATTAAA+TGG + chr1_1:54108124-54108143 None:intergenic 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + chr1_1:54108192-54108211 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG - chr1_1:54108330-54108349 Msa0028990:intron 20.0%
!!! GTTCAAAGTATTATTAAATG+TGG + chr1_1:54108361-54108380 None:intergenic 20.0%
!! TTTCATCTATATCTCATATT+AGG - chr1_1:54108560-54108579 Msa0028990:intron 20.0%
!! ATTAATTAAGCACATATTGA+TGG - chr1_1:54109603-54109622 Msa0028990:intron 20.0%
!!! ATCTTGATAATATATTGCAT+GGG + chr1_1:54109896-54109915 None:intergenic 20.0%
!!! TATCTTGATAATATATTGCA+TGG + chr1_1:54109897-54109916 None:intergenic 20.0%
!!! TTAGTAGAAACTATTTTTGA+AGG + chr1_1:54110004-54110023 None:intergenic 20.0%
!! CTAATTTATTATGAGTAAAC+AGG - chr1_1:54110020-54110039 Msa0028990:intron 20.0%
!! AAAGTATAAAATCATTTCGT+TGG - chr1_1:54110065-54110084 Msa0028990:intron 20.0%
!! AGAAGTTAAAGTTAAATGAT+CGG - chr1_1:54110134-54110153 Msa0028990:intron 20.0%
!!! TTTGTTTTAACATTAGCAAA+TGG + chr1_1:54110324-54110343 None:intergenic 20.0%
!!! GTTCATTATTTTAAGATCAT+TGG - chr1_1:54111151-54111170 Msa0028990:intron 20.0%
!! AGATAAGAAATAATGGAAGA+AGG + chr1_1:54104534-54104553 None:intergenic 25.0%
! GAACTTTACTTATCTTCAAA+AGG + chr1_1:54105013-54105032 None:intergenic 25.0%
! ATAAAGATAGAAGAATCATG+TGG + chr1_1:54105073-54105092 None:intergenic 25.0%
! AAAATTATTATGCTTCATGG+AGG + chr1_1:54105108-54105127 None:intergenic 25.0%
! AAAAGCTAACTTAGCATAAT+TGG + chr1_1:54105355-54105374 None:intergenic 25.0%
! GGAATATATATCCACAAATA+TGG - chr1_1:54105595-54105614 Msa0028990:intron 25.0%
! ATAATAGATGTCCATATTTG+TGG + chr1_1:54105609-54105628 None:intergenic 25.0%
!! ATCGATGTGTTACAATTTTA+CGG + chr1_1:54105805-54105824 None:intergenic 25.0%
! AGAATGGTAGTAATTAAGTA+GGG + chr1_1:54106482-54106501 None:intergenic 25.0%
! TAGAATGGTAGTAATTAAGT+AGG + chr1_1:54106483-54106502 None:intergenic 25.0%
! GAAAACTTCCAAAAATAGAA+TGG + chr1_1:54106498-54106517 None:intergenic 25.0%
!!! AATAAGATGTAGCTTTAGAT+AGG - chr1_1:54106716-54106735 Msa0028990:CDS 25.0%
! TTGATGTCATTGTAATCTAT+AGG - chr1_1:54106945-54106964 Msa0028990:intron 25.0%
! TCAAGTAGGATAAAATAAGT+TGG - chr1_1:54107337-54107356 Msa0028990:intron 25.0%
!!! AAGTTGGTAGTATTAAATAC+AGG - chr1_1:54107353-54107372 Msa0028990:intron 25.0%
!!! AGTTGGTAGTATTAAATACA+GGG - chr1_1:54107354-54107373 Msa0028990:intron 25.0%
!! TTAGGTTGTCATATAGTATA+AGG + chr1_1:54107380-54107399 None:intergenic 25.0%
! ATGACAACCTAAACAAATTT+AGG - chr1_1:54107388-54107407 Msa0028990:intron 25.0%
!! ACTAGTACCTAAATTTGTTT+AGG + chr1_1:54107398-54107417 None:intergenic 25.0%
! TATTATTATTGATGTACCAC+CGG - chr1_1:54107422-54107441 Msa0028990:intron 25.0%
! GTCATTAATAATTGTGTGAT+AGG - chr1_1:54107513-54107532 Msa0028990:intron 25.0%
! CGATATTATTAATAAGTGTG+TGG - chr1_1:54107591-54107610 Msa0028990:intron 25.0%
!! ATTAATAAGTGTGTGGATTA+TGG - chr1_1:54107598-54107617 Msa0028990:intron 25.0%
! AACATGATTGATGTTATGAT+CGG + chr1_1:54107674-54107693 None:intergenic 25.0%
! TAAAATTAGATAAAACGGGT+TGG + chr1_1:54108092-54108111 None:intergenic 25.0%
! GTTCTCCATTTAATTCTAAT+AGG - chr1_1:54108116-54108135 Msa0028990:intron 25.0%
!!! AGTAAAAGTATTTGTTGTCT+TGG + chr1_1:54108228-54108247 None:intergenic 25.0%
! TCTCTCTGCAATAAATATAT+AGG - chr1_1:54108319-54108338 Msa0028990:intron 25.0%
! CTCTCTGCAATAAATATATA+GGG - chr1_1:54108320-54108339 Msa0028990:intron 25.0%
! TCTCTGCAATAAATATATAG+GGG - chr1_1:54108321-54108340 Msa0028990:intron 25.0%
! TGCAAAAGTGACAATTATAA+AGG - chr1_1:54108417-54108436 Msa0028990:intron 25.0%
! AAGTGACAATTATAAAGGAA+CGG - chr1_1:54108422-54108441 Msa0028990:intron 25.0%
! ATTAGGTTTAGATTGTCTAA+TGG - chr1_1:54108577-54108596 Msa0028990:intron 25.0%
! ATAATGTTCGTGTAGTAATT+TGG - chr1_1:54108675-54108694 Msa0028990:intron 25.0%
! ACTATTAATTTACCTGAAGA+TGG + chr1_1:54109438-54109457 None:intergenic 25.0%
! ACATATAATAAGATTAGGCA+CGG - chr1_1:54109640-54109659 Msa0028990:intron 25.0%
!! TCTTGATAATATATTGCATG+GGG + chr1_1:54109895-54109914 None:intergenic 25.0%
! GAAGTTAAAGTTAAATGATC+GGG - chr1_1:54110135-54110154 Msa0028990:intron 25.0%
! AAGTTAAAGTTAAATGATCG+GGG - chr1_1:54110136-54110155 Msa0028990:intron 25.0%
! TTACAATCAACATATAGAGT+TGG + chr1_1:54110179-54110198 None:intergenic 25.0%
! ACTTCTAACAAACAACAATT+TGG - chr1_1:54110387-54110406 Msa0028990:intron 25.0%
! CTCATTCAAAATTTATGTGT+TGG + chr1_1:54110442-54110461 None:intergenic 25.0%
! TTATGTTGACATCAATTCAT+TGG - chr1_1:54110586-54110605 Msa0028990:intron 25.0%
GCTAGCTAGATAAGAAATAA+TGG + chr1_1:54104541-54104560 None:intergenic 30.0%
TTAGGAGAATAGAGAAGTTA+TGG - chr1_1:54105235-54105254 Msa0028990:intron 30.0%
ACTCACATGTATTTAACAAC+AGG + chr1_1:54105284-54105303 None:intergenic 30.0%
TATTCCTAAAATGTTGCTGA+CGG + chr1_1:54105581-54105600 None:intergenic 30.0%
AACGGCTAAACTTAATATAG+TGG + chr1_1:54105843-54105862 None:intergenic 30.0%
! AAAAGATGCCATTTGTTTCT+TGG + chr1_1:54105949-54105968 None:intergenic 30.0%
! AAAGATCGTTTGTTAACGTT+AGG + chr1_1:54106149-54106168 None:intergenic 30.0%
GTGTATTAGAATGTATTCTG+AGG - chr1_1:54106295-54106314 Msa0028990:intron 30.0%
CATAGGAACATAACATCAAT+TGG - chr1_1:54106622-54106641 Msa0028990:CDS 30.0%
AACATAACATCAATTGGTCA+CGG - chr1_1:54106628-54106647 Msa0028990:CDS 30.0%
! GTCTGATTAGTTCTTGATTA+TGG - chr1_1:54106693-54106712 Msa0028990:CDS 30.0%
ATAATAGAGTTGAGAGAAGT+AGG - chr1_1:54106881-54106900 Msa0028990:CDS 30.0%
TAAAAAGCAACGAATTCGAA+TGG + chr1_1:54107047-54107066 None:intergenic 30.0%
GATTCATTATTCTCTCAAGT+AGG - chr1_1:54107323-54107342 Msa0028990:intron 30.0%
! TATGGATGTTAGTATTTTGC+CGG + chr1_1:54107444-54107463 None:intergenic 30.0%
! TGAAAGTGTACTTGAATCTA+TGG + chr1_1:54107462-54107481 None:intergenic 30.0%
GACAATTAAAAAGGAACAGA+GGG + chr1_1:54108183-54108202 None:intergenic 30.0%
TGACAATTAAAAAGGAACAG+AGG + chr1_1:54108184-54108203 None:intergenic 30.0%
!!! AGGGAGTACTTTTTATCTAA+TGG - chr1_1:54108445-54108464 Msa0028990:intron 30.0%
GTTTAGATTGTCTAATGGTA+TGG - chr1_1:54108582-54108601 Msa0028990:intron 30.0%
! CACGAACATTATTTTCATCA+CGG + chr1_1:54108667-54108686 None:intergenic 30.0%
TCACGTGTTTGATGAAATTA+AGG + chr1_1:54108939-54108958 None:intergenic 30.0%
TTACTAGTTGTGAGTAATCA+AGG - chr1_1:54109315-54109334 Msa0028990:intron 30.0%
AAAGATTAACGTTGTATGCT+TGG + chr1_1:54109530-54109549 None:intergenic 30.0%
AATTAAGCACATATTGATGG+AGG - chr1_1:54109606-54109625 Msa0028990:intron 30.0%
GGACCACATATAATAAGATT+AGG - chr1_1:54109635-54109654 Msa0028990:intron 30.0%
GTGCCTAATCTTATTATATG+TGG + chr1_1:54109641-54109660 None:intergenic 30.0%
GACAATGGAATTAATTAGGA+TGG + chr1_1:54109756-54109775 None:intergenic 30.0%
GGTAGACAATGGAATTAATT+AGG + chr1_1:54109760-54109779 None:intergenic 30.0%
!!! GTGTGATTATTTTTGGACTT+TGG + chr1_1:54109839-54109858 None:intergenic 30.0%
! CTTGATAATATATTGCATGG+GGG + chr1_1:54109894-54109913 None:intergenic 30.0%
! CTCAACTTTGTTTGAGTTAA+TGG - chr1_1:54110104-54110123 Msa0028990:intron 30.0%
AGAAACACATTAATTGCATG+CGG - chr1_1:54110253-54110272 Msa0028990:intron 30.0%
! TTGTTTGTTAGAAGTGAAGT+TGG + chr1_1:54110382-54110401 None:intergenic 30.0%
TCTAACAAACAACAATTTGG+AGG - chr1_1:54110390-54110409 Msa0028990:intron 30.0%
CTAACAAACAACAATTTGGA+GGG - chr1_1:54110391-54110410 Msa0028990:intron 30.0%
! ATTTTGAATGAGTGAGATCT+AGG - chr1_1:54110450-54110469 Msa0028990:intron 30.0%
! TTTTGAATGAGTGAGATCTA+GGG - chr1_1:54110451-54110470 Msa0028990:intron 30.0%
ATGGACAAAGCTTCTATATT+AGG - chr1_1:54111191-54111210 Msa0028990:intron 30.0%
! TTGATGTTATGGTAATGTTG+AGG - chr1_1:54111483-54111502 Msa0028990:CDS 30.0%
! TGATGTTATGGTAATGTTGA+GGG - chr1_1:54111484-54111503 Msa0028990:CDS 30.0%
!! CAATAATGGTGTTTTTGTTG+CGG - chr1_1:54111544-54111563 Msa0028990:CDS 30.0%
!! TGGGGTGATGGATATTATAA+TGG - chr1_1:54104274-54104293 Msa0028990:CDS 35.0%
AGAACCATTCAGATTCTGTT+AGG + chr1_1:54104459-54104478 None:intergenic 35.0%
TGTAAAGAGAAAGCTAGCAT+AGG + chr1_1:54104609-54104628 None:intergenic 35.0%
ACCAAAATGCATATCTAACC+GGG + chr1_1:54105484-54105503 None:intergenic 35.0%
CACCAAAATGCATATCTAAC+CGG + chr1_1:54105485-54105504 None:intergenic 35.0%
!! GTTAGATATGCATTTTGGTG+AGG - chr1_1:54105485-54105504 Msa0028990:intron 35.0%
GGCTAAACTTAATATAGTGG+CGG + chr1_1:54105840-54105859 None:intergenic 35.0%
TTTAGCCGTTGTAGAGATTA+TGG - chr1_1:54105853-54105872 Msa0028990:intron 35.0%
TCATGCCATAATCTCTACAA+CGG + chr1_1:54105861-54105880 None:intergenic 35.0%
GACATGTCATTACAAGTTTG+TGG - chr1_1:54106232-54106251 Msa0028990:intron 35.0%
TGAGCATTATATGCTTGAAG+AGG - chr1_1:54106361-54106380 Msa0028990:intron 35.0%
CATTATATGCTTGAAGAGGA+CGG - chr1_1:54106365-54106384 Msa0028990:intron 35.0%
ATCAGACTCATTGCAATATC+TGG + chr1_1:54106680-54106699 None:intergenic 35.0%
GAAGTAGGATTCGATTAGAA+TGG - chr1_1:54106896-54106915 Msa0028990:CDS 35.0%
GAAGCAGCCAAATTAATTGT+TGG - chr1_1:54106967-54106986 Msa0028990:intron 35.0%
TAGTTATATATGGTACGGAG+TGG - chr1_1:54107273-54107292 Msa0028990:intron 35.0%
AGTTATATATGGTACGGAGT+GGG - chr1_1:54107274-54107293 Msa0028990:intron 35.0%
CTCAAAACACACAAAATCAC+AGG + chr1_1:54107740-54107759 None:intergenic 35.0%
TATATATAAGGTTGCCAGGA+AGG - chr1_1:54107781-54107800 Msa0028990:intron 35.0%
ATATATAAGGTTGCCAGGAA+GGG - chr1_1:54107782-54107801 Msa0028990:intron 35.0%
! TTCAAGAGCTATTCTAGCTA+AGG - chr1_1:54107866-54107885 Msa0028990:intron 35.0%
! TATTCTAGCTAAGGTGATCA+CGG - chr1_1:54107875-54107894 Msa0028990:intron 35.0%
! TCCTCTTGTTTCTCAATCAT+TGG - chr1_1:54108020-54108039 Msa0028990:CDS 35.0%
ATCATTGGCAAAATTTCCAC+CGG - chr1_1:54108035-54108054 Msa0028990:CDS 35.0%
!! AATTAGATAAAACGGGTTGG+AGG + chr1_1:54108089-54108108 None:intergenic 35.0%
!!! AACAGAGGGAGTACTATTTT+GGG + chr1_1:54108169-54108188 None:intergenic 35.0%
TGACAATTATAAAGGAACGG+AGG - chr1_1:54108425-54108444 Msa0028990:intron 35.0%
GACAATTATAAAGGAACGGA+GGG - chr1_1:54108426-54108445 Msa0028990:intron 35.0%
CATGTACAATTTACAGACTG+TGG - chr1_1:54108479-54108498 Msa0028990:intron 35.0%
ATGTTCGTGTAGTAATTTGG+TGG - chr1_1:54108678-54108697 Msa0028990:intron 35.0%
TGTTCGTGTAGTAATTTGGT+GGG - chr1_1:54108679-54108698 Msa0028990:intron 35.0%
TCTTGATTGGGATTTGTAGA+GGG + chr1_1:54109084-54109103 None:intergenic 35.0%
AATTATTTGACCCGTCGTTT+GGG + chr1_1:54109278-54109297 None:intergenic 35.0%
AAATTATTTGACCCGTCGTT+TGG + chr1_1:54109279-54109298 None:intergenic 35.0%
CGGGTCAAATAATTTAGACT+CGG - chr1_1:54109284-54109303 Msa0028990:intron 35.0%
! AAACCGATTCAACACAAAGA+TGG - chr1_1:54109367-54109386 Msa0028990:intron 35.0%
! AACCGATTCAACACAAAGAT+GGG - chr1_1:54109368-54109387 Msa0028990:intron 35.0%
AACCCATCTTTGTGTTGAAT+CGG + chr1_1:54109373-54109392 None:intergenic 35.0%
TAATAAGATTAGGCACGGTT+TGG - chr1_1:54109645-54109664 Msa0028990:intron 35.0%
AATAAGATTAGGCACGGTTT+GGG - chr1_1:54109646-54109665 Msa0028990:intron 35.0%
! TATAGATCTCTGGAGAAAAC+AGG + chr1_1:54109717-54109736 None:intergenic 35.0%
AAAAATAATCACACCCCACA+CGG - chr1_1:54109845-54109864 Msa0028990:intron 35.0%
ACGTCTATAATTTACCGTGT+GGG + chr1_1:54109862-54109881 None:intergenic 35.0%
TTGTTAGAAGTGAAGTTGGA+TGG + chr1_1:54110378-54110397 None:intergenic 35.0%
!!! GAGGGTGTCTTTTTATTTCT+TGG - chr1_1:54110409-54110428 Msa0028990:intron 35.0%
AAACCGAATTCCCAAAAAAG+TGG - chr1_1:54110474-54110493 Msa0028990:intron 35.0%
!!! ATGCCACTTTTTTGGGAATT+CGG + chr1_1:54110480-54110499 None:intergenic 35.0%
!!! AACATGCATGCCACTTTTTT+GGG + chr1_1:54110487-54110506 None:intergenic 35.0%
!!! AAACATGCATGCCACTTTTT+TGG + chr1_1:54110488-54110507 None:intergenic 35.0%
!!! TGTTGACTGGTTTTGAATGA+TGG + chr1_1:54110808-54110827 None:intergenic 35.0%
TTCAAAACCAGTCAACACAA+TGG - chr1_1:54110811-54110830 Msa0028990:intron 35.0%
!! TAAGTGATGTAGTTGATGGA+AGG + chr1_1:54110852-54110871 None:intergenic 35.0%
ACTGAACAACAAAGTAGAAG+TGG - chr1_1:54111287-54111306 Msa0028990:intron 35.0%
ACAAAGTAGAAGTGGTGTAA+CGG - chr1_1:54111295-54111314 Msa0028990:intron 35.0%
TATTGAGAGTGATGCTTTGT+TGG - chr1_1:54111427-54111446 Msa0028990:CDS 35.0%
ATTGAGTGTTTGCATAGAGA+AGG - chr1_1:54111452-54111471 Msa0028990:CDS 35.0%
! AGGATTGTTGCTTGATGTTA+TGG - chr1_1:54111472-54111491 Msa0028990:CDS 35.0%
! TGAAGGAAAATGGTGGAAAT+GGG - chr1_1:54111582-54111601 Msa0028990:CDS 35.0%
CATAGAGTTCTCTTAGTTGC+TGG + chr1_1:54104369-54104388 None:intergenic 40.0%
CTCTATGAATCATTGTCTGC+CGG - chr1_1:54104382-54104401 Msa0028990:CDS 40.0%
AGGACCTAACAGAATCTGAA+TGG - chr1_1:54104452-54104471 Msa0028990:CDS 40.0%
! TATCAATGCAGTTTTTCCCC+CGG - chr1_1:54105463-54105482 Msa0028990:intron 40.0%
CAAAATGCATATCTAACCGG+GGG + chr1_1:54105482-54105501 None:intergenic 40.0%
CCAAAATGCATATCTAACCG+GGG + chr1_1:54105483-54105502 None:intergenic 40.0%
TAGCATTTAAGCAACACTCG+CGG + chr1_1:54105534-54105553 None:intergenic 40.0%
CTGACGGTTCATAAATTCGT+AGG + chr1_1:54105565-54105584 None:intergenic 40.0%
! TGAACCGTCAGCAACATTTT+AGG - chr1_1:54105574-54105593 Msa0028990:intron 40.0%
! CCATTTGTTTCTTGGAGATG+CGG + chr1_1:54105941-54105960 None:intergenic 40.0%
CGAATAAGAGTTTGCATAGC+TGG - chr1_1:54106325-54106344 Msa0028990:intron 40.0%
TTGGTCACGGTTTATGAAGA+TGG - chr1_1:54106641-54106660 Msa0028990:CDS 40.0%
TGGTCACGGTTTATGAAGAT+GGG - chr1_1:54106642-54106661 Msa0028990:CDS 40.0%
GCACTATATATAAGGTTGCC+AGG - chr1_1:54107777-54107796 Msa0028990:intron 40.0%
ACACAAAGAGACAGCATGTA+TGG - chr1_1:54107808-54107827 Msa0028990:intron 40.0%
GCCAATGATTGAGAAACAAG+AGG + chr1_1:54108024-54108043 None:intergenic 40.0%
CTGTATATTAGCACTCTAGC+CGG + chr1_1:54108057-54108076 None:intergenic 40.0%
!!! ACAGAGGGAGTACTATTTTG+GGG + chr1_1:54108168-54108187 None:intergenic 40.0%
!!! GAACAGAGGGAGTACTATTT+TGG + chr1_1:54108170-54108189 None:intergenic 40.0%
TGTGGTATGCATTCCTGTAT+TGG - chr1_1:54108497-54108516 Msa0028990:intron 40.0%
GTATGCATTCCTGTATTGGA+TGG - chr1_1:54108501-54108520 Msa0028990:intron 40.0%
!! GTGTAGTAATTTGGTGGGTT+GGG - chr1_1:54108684-54108703 Msa0028990:intron 40.0%
CATGATGGTAGGAATGTGAT+CGG + chr1_1:54109043-54109062 None:intergenic 40.0%
GTCTTGATTGGGATTTGTAG+AGG + chr1_1:54109085-54109104 None:intergenic 40.0%
AAATCCCAATCAAGACGACA+TGG - chr1_1:54109089-54109108 Msa0028990:intron 40.0%
TCATCCATGTCGTCTTGATT+GGG + chr1_1:54109096-54109115 None:intergenic 40.0%
TTCATCCATGTCGTCTTGAT+TGG + chr1_1:54109097-54109116 None:intergenic 40.0%
TCAGAATCTGAAGACGAAAC+AGG - chr1_1:54109159-54109178 Msa0028990:intron 40.0%
CTCTACAATAGCTGTCATTG+AGG + chr1_1:54109205-54109224 None:intergenic 40.0%
TCAATCTGCATCAACTCACT+TGG + chr1_1:54109228-54109247 None:intergenic 40.0%
ATTATTTGACCCGTCGTTTG+GGG + chr1_1:54109277-54109296 None:intergenic 40.0%
AACTTGTAGCGAATTACCCA+CGG + chr1_1:54109409-54109428 None:intergenic 40.0%
CAAGTTCAACTACCATCTTC+AGG - chr1_1:54109423-54109442 Msa0028990:intron 40.0%
TAAGCACATATTGATGGAGG+AGG - chr1_1:54109609-54109628 Msa0028990:intron 40.0%
ACATATTGATGGAGGAGGAT+TGG - chr1_1:54109614-54109633 Msa0028990:intron 40.0%
ATAAGATTAGGCACGGTTTG+GGG - chr1_1:54109647-54109666 Msa0028990:intron 40.0%
!! CATTGTCTACCCCATTTTTG+CGG - chr1_1:54109769-54109788 Msa0028990:intron 40.0%
!! ATTGTCTACCCCATTTTTGC+GGG - chr1_1:54109770-54109789 Msa0028990:intron 40.0%
GCTCCACTTCTATGCAAAAT+GGG - chr1_1:54109792-54109811 Msa0028990:intron 40.0%
! AGTCCCATTTTGCATAGAAG+TGG + chr1_1:54109798-54109817 None:intergenic 40.0%
! GTGTGGGGTGTGATTATTTT+TGG + chr1_1:54109846-54109865 None:intergenic 40.0%
CGTCTATAATTTACCGTGTG+GGG + chr1_1:54109861-54109880 None:intergenic 40.0%
CACGTCTATAATTTACCGTG+TGG + chr1_1:54109863-54109882 None:intergenic 40.0%
! CAATGTTCCATTGTGTTGAC+TGG + chr1_1:54110821-54110840 None:intergenic 40.0%
GGAGTAAGTGATGTAGTTGA+TGG + chr1_1:54110856-54110875 None:intergenic 40.0%
!! GATGTATTTGAGGAGGCATT+GGG + chr1_1:54110958-54110977 None:intergenic 40.0%
TGAAGAGGATGTATTTGAGG+AGG + chr1_1:54110965-54110984 None:intergenic 40.0%
CTGTGAAGAGGATGTATTTG+AGG + chr1_1:54110968-54110987 None:intergenic 40.0%
!!! TTTCGTCATGGTTTTTGGTG+TGG + chr1_1:54111001-54111020 None:intergenic 40.0%
! TTGTCCATTTTCGTCACGAA+TGG + chr1_1:54111179-54111198 None:intergenic 40.0%
GTTGTTCAGTCTCTATCTGA+CGG + chr1_1:54111277-54111296 None:intergenic 40.0%
! TAGAAGTGGTGTAACGGTTT+TGG - chr1_1:54111301-54111320 Msa0028990:intron 40.0%
! CTCACCTTTTTCTTCTCTGT+TGG + chr1_1:54111332-54111351 None:intergenic 40.0%
CAACAGAGAAGAAAAAGGTG+AGG - chr1_1:54111330-54111349 Msa0028990:intron 40.0%
GTGAGGATTGTTGAAGAATG+TGG - chr1_1:54111347-54111366 Msa0028990:intron 40.0%
GAGTTGAGGATTGAGGTTAT+TGG - chr1_1:54111506-54111525 Msa0028990:CDS 40.0%
GTTCAGTCTTCGCTCAATAA+TGG - chr1_1:54111530-54111549 Msa0028990:CDS 40.0%
!! TGTTTTTGTTGCGGAGTTGA+GGG - chr1_1:54111553-54111572 Msa0028990:CDS 40.0%
! GTGAAGGAAAATGGTGGAAA+TGG - chr1_1:54111581-54111600 Msa0028990:CDS 40.0%
TCGAAAGACAGTGCAACCAA+TGG - chr1_1:54104309-54104328 Msa0028990:CDS 45.0%
AAAGACAGTGCAACCAATGG+AGG - chr1_1:54104312-54104331 Msa0028990:CDS 45.0%
!! AGTTGGTGGATTTGTCTCTC+CGG + chr1_1:54104404-54104423 None:intergenic 45.0%
TCAGATTCTGTTAGGTCCTC+AGG + chr1_1:54104451-54104470 None:intergenic 45.0%
! GTCTCTTTCTCTTTTCCTCC+TGG - chr1_1:54104490-54104509 Msa0028990:CDS 45.0%
! TTCTCTTTTCCTCCTGGTGT+AGG - chr1_1:54104496-54104515 Msa0028990:CDS 45.0%
! TCTCTTTTCCTCCTGGTGTA+GGG - chr1_1:54104497-54104516 Msa0028990:CDS 45.0%
TGAGTTACTTACCCTACACC+AGG + chr1_1:54104511-54104530 None:intergenic 45.0%
ATGGTTTCTCTCCATGAGAG+AGG - chr1_1:54105254-54105273 Msa0028990:intron 45.0%
! CCCCGGTTAGATATGCATTT+TGG - chr1_1:54105480-54105499 Msa0028990:intron 45.0%
AGCATTTAAGCAACACTCGC+GGG + chr1_1:54105533-54105552 None:intergenic 45.0%
GATGACACTTCACGTAAACC+CGG - chr1_1:54105903-54105922 Msa0028990:intron 45.0%
CCGCATCTCCAAGAAACAAA+TGG - chr1_1:54105938-54105957 Msa0028990:intron 45.0%
! GGATGTTAGTATTTTGCCGG+TGG + chr1_1:54107441-54107460 None:intergenic 45.0%
TATATTAGCACTCTAGCCGG+TGG + chr1_1:54108054-54108073 None:intergenic 45.0%
! CGGCTAGAGTGCTAATATAC+AGG - chr1_1:54108055-54108074 Msa0028990:CDS 45.0%
TGAGTTTGGCACAACGGATA+AGG - chr1_1:54108530-54108549 Msa0028990:intron 45.0%
! CGTGTAGTAATTTGGTGGGT+TGG - chr1_1:54108683-54108702 Msa0028990:intron 45.0%
TGTGATCGGTTGAGGAAGTT+GGG + chr1_1:54109029-54109048 None:intergenic 45.0%
ATGTGATCGGTTGAGGAAGT+TGG + chr1_1:54109030-54109049 None:intergenic 45.0%
TCCTACCATCATGTACACCA+TGG - chr1_1:54109050-54109069 Msa0028990:intron 45.0%
GATTGGGATTTGTAGAGGGT+GGG + chr1_1:54109080-54109099 None:intergenic 45.0%
TGATTGGGATTTGTAGAGGG+TGG + chr1_1:54109081-54109100 None:intergenic 45.0%
GAATCTGAAGACGAAACAGG+AGG - chr1_1:54109162-54109181 Msa0028990:intron 45.0%
AGTAATCAAGGAAACCCGTC+AGG - chr1_1:54109327-54109346 Msa0028990:intron 45.0%
GTTCCAATTGAAGAACCCGT+GGG - chr1_1:54109390-54109409 Msa0028990:intron 45.0%
TTACCCACGGGTTCTTCAAT+TGG + chr1_1:54109396-54109415 None:intergenic 45.0%
ACTTGTAGCGAATTACCCAC+GGG + chr1_1:54109408-54109427 None:intergenic 45.0%
! TAAGATTAGGCACGGTTTGG+GGG - chr1_1:54109648-54109667 Msa0028990:intron 45.0%
CGCAAAAATGGGGTAGACAA+TGG + chr1_1:54109771-54109790 None:intergenic 45.0%
GGCTCCACTTCTATGCAAAA+TGG - chr1_1:54109791-54109810 Msa0028990:intron 45.0%
ATATATTGCATGGGGGAGCA+TGG + chr1_1:54109887-54109906 None:intergenic 45.0%
AGTGGCATGCATGTTTGCAT+TGG - chr1_1:54110492-54110511 Msa0028990:intron 45.0%
!! CCAGTTGGTGAAAGAGGATT+GGG + chr1_1:54110880-54110899 None:intergenic 45.0%
!! TCCAGTTGGTGAAAGAGGAT+TGG + chr1_1:54110881-54110900 None:intergenic 45.0%
! GGATGTATTTGAGGAGGCAT+TGG + chr1_1:54110959-54110978 None:intergenic 45.0%
!!! GGTTTTTGGTGTGGAGGTAT+GGG + chr1_1:54110992-54111011 None:intergenic 45.0%
!!! TGGTTTTTGGTGTGGAGGTA+TGG + chr1_1:54110993-54111012 None:intergenic 45.0%
! GGAGGTTTCGTCATGGTTTT+TGG + chr1_1:54111006-54111025 None:intergenic 45.0%
GAAGAGAGAAACTCAACGAG+AGG - chr1_1:54111129-54111148 Msa0028990:intron 45.0%
GGTTCCATTCGTGACGAAAA+TGG - chr1_1:54111172-54111191 Msa0028990:intron 45.0%
!! AAGTGGTGTAACGGTTTTGG+TGG - chr1_1:54111304-54111323 Msa0028990:intron 45.0%
!! AGTGGTGTAACGGTTTTGGT+GGG - chr1_1:54111305-54111324 Msa0028990:intron 45.0%
GGGTCCAACAGAGAAGAAAA+AGG - chr1_1:54111325-54111344 Msa0028990:intron 45.0%
! TGGTAATGTTGAGGGAGTTG+AGG - chr1_1:54111492-54111511 Msa0028990:CDS 45.0%
!! GTGTTTTTGTTGCGGAGTTG+AGG - chr1_1:54111552-54111571 Msa0028990:CDS 45.0%
AGGGCTAAGGTGAAGGAAAA+TGG - chr1_1:54111572-54111591 Msa0028990:CDS 45.0%
GCTAAGGTGAAGGAAAATGG+TGG - chr1_1:54111575-54111594 Msa0028990:CDS 45.0%
ACCAATGGAGGTTAGTGCAG+AGG - chr1_1:54104324-54104343 Msa0028990:CDS 50.0%
TCCTCTGCACTAACCTCCAT+TGG + chr1_1:54104328-54104347 None:intergenic 50.0%
! TCAGGTGACAAGGAAGCACA+TGG + chr1_1:54104433-54104452 None:intergenic 50.0%
ATGTGCTTCCTTGTCACCTG+AGG - chr1_1:54104432-54104451 Msa0028990:CDS 50.0%
TGTTAGGTCCTCAGGTGACA+AGG + chr1_1:54104443-54104462 None:intergenic 50.0%
GTTACTTACCCTACACCAGG+AGG + chr1_1:54104508-54104527 None:intergenic 50.0%
CAACAGGCTTTCCTCTCTCA+TGG + chr1_1:54105268-54105287 None:intergenic 50.0%
CATTTAAGCAACACTCGCGG+GGG + chr1_1:54105531-54105550 None:intergenic 50.0%
GCATTTAAGCAACACTCGCG+GGG + chr1_1:54105532-54105551 None:intergenic 50.0%
TGGAGATGCGGCAATGATGT+GGG + chr1_1:54105929-54105948 None:intergenic 50.0%
TTGGAGATGCGGCAATGATG+TGG + chr1_1:54105930-54105949 None:intergenic 50.0%
AAGAGGACGGCAGCTATAGA+GGG - chr1_1:54106378-54106397 Msa0028990:intron 50.0%
CTCTTTGTGTATGCCCTTCC+TGG + chr1_1:54107798-54107817 None:intergenic 50.0%
GAGACAGCATGTATGGCTCA+CGG - chr1_1:54107815-54107834 Msa0028990:intron 50.0%
AGACAGCATGTATGGCTCAC+GGG - chr1_1:54107816-54107835 Msa0028990:intron 50.0%
TCAACGACGCCATCCAATAC+AGG + chr1_1:54108513-54108532 None:intergenic 50.0%
TTGGATGGCGTCGTTGAGTT+TGG - chr1_1:54108516-54108535 Msa0028990:intron 50.0%
CGTCGTTGAGTTTGGCACAA+CGG - chr1_1:54108524-54108543 Msa0028990:intron 50.0%
!! TGTTCTGAGAGTGCTGGCTT+TGG + chr1_1:54108994-54109013 None:intergenic 50.0%
!! GTTGAGTGTTCTGAGAGTGC+TGG + chr1_1:54109000-54109019 None:intergenic 50.0%
! GGTTGAGGAAGTTGGGTTAG+AGG + chr1_1:54109022-54109041 None:intergenic 50.0%
GGTAGGAATGTGATCGGTTG+AGG + chr1_1:54109037-54109056 None:intergenic 50.0%
GCCATGGTGTACATGATGGT+AGG + chr1_1:54109054-54109073 None:intergenic 50.0%
GTCTGCCATGGTGTACATGA+TGG + chr1_1:54109058-54109077 None:intergenic 50.0%
AGACGACATGGATGAAGACG+AGG - chr1_1:54109101-54109120 Msa0028990:intron 50.0%
CTGTCATTGAGGTTGCACGT+CGG + chr1_1:54109194-54109213 None:intergenic 50.0%
GGTTCCAATTGAAGAACCCG+TGG - chr1_1:54109389-54109408 Msa0028990:intron 50.0%
! AAGATTAGGCACGGTTTGGG+GGG - chr1_1:54109649-54109668 Msa0028990:intron 50.0%
AAGTGGAGCCCGCAAAAATG+GGG + chr1_1:54109781-54109800 None:intergenic 50.0%
GAAGTGGAGCCCGCAAAAAT+GGG + chr1_1:54109782-54109801 None:intergenic 50.0%
AGAAGTGGAGCCCGCAAAAA+TGG + chr1_1:54109783-54109802 None:intergenic 50.0%
! GTTGGTGAAAGAGGATTGGG+AGG + chr1_1:54110877-54110896 None:intergenic 50.0%
CCCAATCCTCTTTCACCAAC+TGG - chr1_1:54110877-54110896 Msa0028990:intron 50.0%
!! GTTGGTCCAGTTGGTGAAAG+AGG + chr1_1:54110886-54110905 None:intergenic 50.0%
!! GTATTTGAGGAGGCATTGGG+AGG + chr1_1:54110955-54110974 None:intergenic 50.0%
!!! CGTCATGGTTTTTGGTGTGG+AGG + chr1_1:54110998-54111017 None:intergenic 50.0%
TTTGAGGGGAGGTTTCGTCA+TGG + chr1_1:54111013-54111032 None:intergenic 50.0%
TCCTGCATCATGGGTTTGAG+GGG + chr1_1:54111027-54111046 None:intergenic 50.0%
CTCCTGCATCATGGGTTTGA+GGG + chr1_1:54111028-54111047 None:intergenic 50.0%
GAGAGCGAAAGCAGTTGAGA+CGG - chr1_1:54111376-54111395 Msa0028990:CDS 50.0%
GTTGAGGGAGTTGAGGATTG+AGG - chr1_1:54111499-54111518 Msa0028990:CDS 50.0%
GAAGCACATGGACGACGAGT+TGG + chr1_1:54104421-54104440 None:intergenic 55.0%
AGGCATGCAGACTGTTGCAG+AGG - chr1_1:54105505-54105524 Msa0028990:intron 55.0%
GAAGAGGACGGCAGCTATAG+AGG - chr1_1:54106377-54106396 Msa0028990:intron 55.0%
ATGGCTCACGGGTGCAAATG+AGG - chr1_1:54107827-54107846 Msa0028990:intron 55.0%
GCTTTGGCGGCAAAGAGTGA+TGG + chr1_1:54108978-54108997 None:intergenic 55.0%
!! TCTGAGAGTGCTGGCTTTGG+CGG + chr1_1:54108991-54109010 None:intergenic 55.0%
TACGAGTCCACGTGTCCTGA+CGG + chr1_1:54109345-54109364 None:intergenic 55.0%
! AGATTAGGCACGGTTTGGGG+GGG - chr1_1:54109650-54109669 Msa0028990:intron 55.0%
!! GAGGTGGTGGAGGTTGTTTC+CGG + chr1_1:54110936-54110955 None:intergenic 55.0%
!! TTTGAGGAGGCATTGGGAGG+TGG + chr1_1:54110952-54110971 None:intergenic 55.0%
! GGAGGTATGGGACTGTGAAG+AGG + chr1_1:54110980-54110999 None:intergenic 55.0%
TGCATCATGGGTTTGAGGGG+AGG + chr1_1:54111024-54111043 None:intergenic 55.0%
TCCCCTCAAACCCATGATGC+AGG - chr1_1:54111023-54111042 Msa0028990:intron 55.0%
CCTCCTGCATCATGGGTTTG+AGG + chr1_1:54111029-54111048 None:intergenic 55.0%
CCTCAAACCCATGATGCAGG+AGG - chr1_1:54111026-54111045 Msa0028990:intron 55.0%
TGTTCCCTTGCCGCGTAACT+TGG + chr1_1:54111063-54111082 None:intergenic 55.0%
CTCAACTGCTTTCGCTCTCG+TGG + chr1_1:54111375-54111394 None:intergenic 55.0%
AGCGAAAGCAGTTGAGACGG+AGG - chr1_1:54111379-54111398 Msa0028990:CDS 55.0%
! TGAGACGGAGGTTGCTGCTT+CGG - chr1_1:54111391-54111410 Msa0028990:CDS 55.0%
TGTTGCGGAGTTGAGGGCTA+AGG - chr1_1:54111559-54111578 Msa0028990:CDS 55.0%
GGAGTTGAGGGCTAAGGTGA+AGG - chr1_1:54111565-54111584 Msa0028990:CDS 55.0%
! GCACATGGACGACGAGTTGG+TGG + chr1_1:54104418-54104437 None:intergenic 60.0%
ATGCGGCAATGATGTGGGCC+GGG + chr1_1:54105924-54105943 None:intergenic 60.0%
GATGCGGCAATGATGTGGGC+CGG + chr1_1:54105925-54105944 None:intergenic 60.0%
GCTCACGGGTGCAAATGAGG+TGG - chr1_1:54107830-54107849 Msa0028990:intron 60.0%
TGTAGAGGGTGGGTCTGCCA+TGG + chr1_1:54109070-54109089 None:intergenic 60.0%
AGGAAACCCGTCAGGACACG+TGG - chr1_1:54109335-54109354 Msa0028990:intron 60.0%
ACGAGTCCACGTGTCCTGAC+GGG + chr1_1:54109344-54109363 None:intergenic 60.0%
! GATTAGGCACGGTTTGGGGG+GGG - chr1_1:54109651-54109670 Msa0028990:intron 60.0%
! ATTAGGCACGGTTTGGGGGG+GGG - chr1_1:54109652-54109671 Msa0028990:intron 60.0%
!! GTGGTGGTGGTTGGTCCAGT+TGG + chr1_1:54110895-54110914 None:intergenic 60.0%
! GTGGAGGTTGTTTCCGGTGG+TGG + chr1_1:54110930-54110949 None:intergenic 60.0%
! GTGGTGGAGGTTGTTTCCGG+TGG + chr1_1:54110933-54110952 None:intergenic 60.0%
GGGGTCACCTCCTGCATCAT+GGG + chr1_1:54111036-54111055 None:intergenic 60.0%
AGGGGTCACCTCCTGCATCA+TGG + chr1_1:54111037-54111056 None:intergenic 60.0%
TTGCCGCGTAACTTGGCGGA+GGG + chr1_1:54111056-54111075 None:intergenic 60.0%
TCCGCCAAGTTACGCGGCAA+GGG - chr1_1:54111056-54111075 Msa0028990:intron 60.0%
TCCCTTGCCGCGTAACTTGG+CGG + chr1_1:54111060-54111079 None:intergenic 60.0%
TTGGCGCTCAGCTCGTCTTG+CGG + chr1_1:54111086-54111105 None:intergenic 60.0%
! GGAGGTTGCTGCTTCGGTTC+AGG - chr1_1:54111397-54111416 Msa0028990:CDS 60.0%
GGGTTGGGTCCCCAAACGAC+GGG - chr1_1:54109265-54109284 Msa0028990:intron 65.0%
! TTAGGCACGGTTTGGGGGGG+GGG - chr1_1:54109653-54109672 Msa0028990:intron 65.0%
!! CGCGTGGAAGTGGTGGTGGT+TGG + chr1_1:54110904-54110923 None:intergenic 65.0%
!! GAGGCATTGGGAGGTGGTGG+AGG + chr1_1:54110946-54110965 None:intergenic 65.0%
!! GAGGAGGCATTGGGAGGTGG+TGG + chr1_1:54110949-54110968 None:intergenic 65.0%
GACCCCTCCGCCAAGTTACG+CGG - chr1_1:54111050-54111069 Msa0028990:intron 65.0%
TGCCGCGTAACTTGGCGGAG+GGG + chr1_1:54111055-54111074 None:intergenic 65.0%
CTTGCCGCGTAACTTGGCGG+AGG + chr1_1:54111057-54111076 None:intergenic 65.0%
CTCCGCCAAGTTACGCGGCA+AGG - chr1_1:54111055-54111074 Msa0028990:intron 65.0%
GAGCGCCAACCATGTCCTCG+CGG - chr1_1:54111097-54111116 Msa0028990:intron 65.0%
TCGCTCCGCGAGGACATGGT+TGG + chr1_1:54111105-54111124 None:intergenic 65.0%
TTCGTCGCTCCGCGAGGACA+TGG + chr1_1:54111109-54111128 None:intergenic 65.0%
CTCTTCTTCGTCGCTCCGCG+AGG + chr1_1:54111115-54111134 None:intergenic 65.0%
! TAGGCACGGTTTGGGGGGGG+GGG - chr1_1:54109654-54109673 Msa0028990:intron 70.0%
GCAGCGCGTGGAAGTGGTGG+TGG + chr1_1:54110908-54110927 None:intergenic 70.0%
GTGGCAGCGCGTGGAAGTGG+TGG + chr1_1:54110911-54110930 None:intergenic 70.0%
GTGGTGGCAGCGCGTGGAAG+TGG + chr1_1:54110914-54110933 None:intergenic 70.0%
CTTCCACGCGCTGCCACCAC+CGG - chr1_1:54110914-54110933 Msa0028990:intron 70.0%
! TTTCCGGTGGTGGCAGCGCG+TGG + chr1_1:54110920-54110939 None:intergenic 70.0%
! AGGCACGGTTTGGGGGGGGG+GGG - chr1_1:54109655-54109674 Msa0028990:intron 75.0%
!! GGCACGGTTTGGGGGGGGGG+GGG - chr1_1:54109656-54109675 Msa0028990:intron 80.0%
!! GCACGGTTTGGGGGGGGGGG+GGG - chr1_1:54109657-54109676 Msa0028990:intron 80.0%
!! CACGGTTTGGGGGGGGGGGG+GGG - chr1_1:54109658-54109677 Msa0028990:intron 80.0%
!! ACGGTTTGGGGGGGGGGGGG+GGG - chr1_1:54109659-54109678 Msa0028990:intron 80.0%
!! CGGTTTGGGGGGGGGGGGGG+GGG - chr1_1:54109660-54109679 Msa0028990:intron 85.0%
! GGTTTGGGGGGGGGGGGGGG+GGG - chr1_1:54109661-54109680 Msa0028990:intron 85.0%
! GTTTGGGGGGGGGGGGGGGG+GGG - chr1_1:54109662-54109681 Msa0028990:intron 85.0%
! TTTGGGGGGGGGGGGGGGGG+GGG - chr1_1:54109663-54109682 Msa0028990:intron 85.0%
!! GGGGGGGGGGGGGGGCTGGC+TGG - chr1_1:54109671-54109690 Msa0028990:intron 95.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 54104265 54111610 54104265 ID=Msa0028990;Name=Msa0028990
chr1_1 mRNA 54104265 54111610 54104265 ID=Msa0028990-mRNA-1;Parent=Msa0028990;Name=Msa0028990-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.66|0.25|1|1|1|4|0|580
chr1_1 exon 54111357 54111610 54111357 ID=Msa0028990-mRNA-1:exon:16019;Parent=Msa0028990-mRNA-1
chr1_1 exon 54107988 54108084 54107988 ID=Msa0028990-mRNA-1:exon:16018;Parent=Msa0028990-mRNA-1
chr1_1 exon 54106431 54106950 54106431 ID=Msa0028990-mRNA-1:exon:16017;Parent=Msa0028990-mRNA-1
chr1_1 exon 54104265 54105133 54104265 ID=Msa0028990-mRNA-1:exon:16016;Parent=Msa0028990-mRNA-1
chr1_1 CDS 54111357 54111610 54111357 ID=Msa0028990-mRNA-1:cds;Parent=Msa0028990-mRNA-1
chr1_1 CDS 54107988 54108084 54107988 ID=Msa0028990-mRNA-1:cds;Parent=Msa0028990-mRNA-1
chr1_1 CDS 54106431 54106950 54106431 ID=Msa0028990-mRNA-1:cds;Parent=Msa0028990-mRNA-1
chr1_1 CDS 54104265 54105133 54104265 ID=Msa0028990-mRNA-1:cds;Parent=Msa0028990-mRNA-1
Gene Sequence

>Msa0028990

ATTCTGGTATGGGGTGATGGATATTATAATGGATCAATTAAGACTCGAAAGACAGTGCAACCAATGGAGGTTAGTGCAGAGGAAGCATCTCTACAAAGAAGCCAGCAACTAAGAGAACTCTATGAATCATTGTCTGCCGGAGAGACAAATCCACCAACTCGTCGTCCATGTGCTTCCTTGTCACCTGAGGACCTAACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCTTTCTCTTTTCCTCCTGGTGTAGGGTTGCCAGGAAGGGCATACACAAAGAGACAGCATGTATGGCTCACGGGTGCAAATGAGGTGGATAGCAAAACATTTTCAAGAGCTATTCTAGCTAAGATTCAAGAAGACCTTAATTTCATCAAACACGTGAAGAGCTTCTTCTTAGACCATCACTCTTTGCCGCCAAAGCCAGCACTCTCAGAACACTCAACCTCTAACCCAACTTCCTCAACCGATCACATTCCTACCATCATGTACACCATGGCAGACCCACCCTCTACAAATCCCAATCAAGACGACATGGATGAAGACGAGGAAGACGAAGAAGATGAAGAAGACGATGAAGTCGAATCAGAATCTGAAGACGAAACAGGAGGTCGTTACCGACGTGCAACCTCAATGACAGCTATTGTAGAGCCAAGTGAGTTGATGCAGATTGAAATGCCCGATGATATTCGGGTTGGGTCCCCAAACGACGGGTCAAATAATTTAGACTCGGATTTTCATTTACTAGTTGTGAGTAATCAAGGAAACCCGTCAGGACACGTGGACTCGTACAAAACCGATTCAACACAAAGATGGGTTCCAATTGAAGAACCCGTGGGTAATTCGCTACAAGTTCAACTACCATCTTCAGTACTTCATCATCAACTAGAAGACTTAACACAAGAAGACACACATTACTCTCAAACAGTATCAACCATCATTCAAAACCAGTCAACACAATGGAACATTGATTTTTCACCTTCCATCAACTACATCACTTACTCCTCCCAATCCTCTTTCACCAACTGGACCAACCACCACCACTTCCACGCGCTGCCACCACCGGAAACAACCTCCACCACCTCCCAATGCCTCCTCAAATACATCCTCTTCACAGTCCCATACCTCCACACCAAAAACCATGACGAAACCTCCCCTCAAACCCATGATGCAGGAGGTGACCCCTCCGCCAAGTTACGCGGCAAGGGAACACCGCAAGACGAGCTGAGCGCCAACCATGTCCTCGCGGAGCGACGAAGAAGAGAGAAACTCAACGAGAGGTTCATTATTTTAAGATCATTGGTTCCATTCGTGACGAAAATGGACAAAGCTTCTATATTAGGTGACACTATTGAGTACTTGAAACAGCTAAGAAGAAAGATACAAGATCTTGAAACACGTAACCGTCAGATAGAGACTGAACAACAAAGTAGAAGTGGTGTAACGGTTTTGGTGGGTCCAACAGAGAAGAAAAAGGTGAGGATTGTTGAAGAATGTGGAGCCACGAGAGCGAAAGCAGTTGAGACGGAGGTTGCTGCTTCGGTTCAGGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATTGAGTGTTTGCATAGAGAAGGATTGTTGCTTGATGTTATGGTAATGTTGAGGGAGTTGAGGATTGAGGTTATTGGAGTTCAGTCTTCGCTCAATAATGGTGTTTTTGTTGCGGAGTTGAGGGCTAAGGTGAAGGAAAATGGTGGAAATGGGAAGAAA
Protein sequence

>Msa0028990

ILVWGDGYYNGSIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGRAYTKRQHVWLTGANEVDSKTFSRAILAKIQEDLNFIKHVKSFFLDHHSLPPKPALSEHSTSNPTSSTDHIPTIMYTMADPPSTNPNQDDMDEDEEDEEDEEDDEVESESEDETGGRYRRATSMTAIVEPSELMQIEMPDDIRVGSPNDGSNNLDSDFHLLVVSNQGNPSGHVDSYKTDSTQRWVPIEEPVGNSLQVQLPSSVLHHQLEDLTQEDTHYSQTVSTIIQNQSTQWNIDFSPSINYITYSSQSSFTNWTNHHHFHALPPPETTSTTSQCLLKYILFTVPYLHTKNHDETSPQTHDAGGDPSAKLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIETEQQSRSGVTVLVGPTEKKKVRIVEECGATRAKAVETEVAASVQVSIIESDALLEIECLHREGLLLDVMVMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGGNGKK