AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127160 MtrunA17_Chr1g0185621 95.144 659 25 2 5 656 3 661 0.0 1290
Msa0127160 MtrunA17_Chr8g0386921 53.125 192 81 3 14 196 4 195 1.99e-60 213
Msa0127160 MtrunA17_Chr8g0386921 31.802 283 152 7 354 615 307 569 2.17e-26 114
Msa0127160 MtrunA17_Chr5g0411331 36.216 185 101 6 13 187 28 205 8.96e-24 101
Msa0127160 MtrunA17_Chr5g0411341 35.294 187 100 7 13 187 45 222 4.34e-23 104
Msa0127160 MtrunA17_Chr5g0411341 30.675 163 110 1 470 629 493 655 5.72e-17 85.1
Msa0127160 MtrunA17_Chr3g0131691 35.204 196 114 5 456 648 289 474 2.49e-20 94.7
Msa0127160 MtrunA17_Chr8g0366751 32.124 193 104 7 13 190 54 234 9.82e-20 93.6
Msa0127160 MtrunA17_Chr8g0366751 33.974 156 100 1 470 622 462 617 3.92e-18 88.6
Msa0127160 MtrunA17_Chr2g0280161 35.032 157 92 3 470 625 177 324 2.10e-19 90.5
Msa0127160 MtrunA17_Chr8g0346151 33.880 183 93 5 457 629 271 435 1.19e-18 89.4
Msa0127160 MtrunA17_Chr2g0307141 31.720 186 106 6 470 650 183 352 2.57e-18 87.0
Msa0127160 MtrunA17_Chr8g0346161 32.948 173 104 3 457 629 283 443 4.45e-18 87.4
Msa0127160 MtrunA17_Chr8g0346161 27.638 199 94 7 6 190 19 181 5.08e-17 84.3
Msa0127160 MtrunA17_Chr4g0033391 31.313 198 104 6 470 656 147 323 8.67e-18 85.1
Msa0127160 MtrunA17_Chr5g0400621 32.258 155 96 2 458 611 144 290 9.81e-18 85.1
Msa0127160 MtrunA17_Chr2g0307131 34.028 144 83 3 470 611 179 312 1.28e-17 85.1
Msa0127160 MtrunA17_Chr7g0225901 29.448 163 99 4 451 611 73 221 2.15e-17 82.4
Msa0127160 MtrunA17_Chr4g0054581 32.886 149 91 3 470 616 198 339 2.38e-17 84.7
Msa0127160 MtrunA17_Chr4g0033291 26.459 257 160 7 365 611 48 285 4.53e-17 82.8
Msa0127160 MtrunA17_Chr5g0400641 28.931 159 100 2 473 626 1 151 4.79e-17 79.0
Msa0127160 MtrunA17_Chr5g0400671 34.532 139 80 2 471 609 155 282 1.37e-16 81.6
Msa0127160 MtrunA17_Chr7g0252041 32.000 175 107 4 467 633 283 453 2.38e-16 82.4
Msa0127160 MtrunA17_Chr4g0049331 29.310 174 113 3 436 609 103 266 4.03e-16 79.7
Msa0127160 MtrunA17_Chr6g0468491 27.136 199 113 5 429 611 88 270 1.71e-15 78.2
Msa0127160 MtrunA17_Chr4g0002801 25.758 198 133 5 458 652 143 329 2.19e-15 77.8
Msa0127160 MtrunA17_Chr5g0400661 29.139 151 90 2 470 609 149 293 2.95e-15 77.4
Msa0127160 MtrunA17_Chr1g0211081 28.061 196 110 5 459 631 311 498 7.80e-15 77.8
Msa0127160 MtrunA17_Chr4g0002781 27.389 157 100 3 458 611 165 310 2.58e-14 75.1
Msa0127160 MtrunA17_Chr7g0260841 42.268 97 53 2 438 534 326 419 2.99e-14 75.9
Msa0127160 MtrunA17_Chr7g0275821 50.704 71 34 1 470 540 252 321 4.77e-14 74.7
Msa0127160 MtrunA17_Chr2g0333621 27.545 167 103 4 452 611 117 272 1.10e-13 72.4
Msa0127160 MtrunA17_Chr4g0054621 27.174 184 106 5 470 648 172 332 1.29e-13 72.8
Msa0127160 MtrunA17_Chr4g0054551 61.111 54 21 0 470 523 155 208 1.38e-13 72.4
Msa0127160 MtrunA17_Chr6g0468461 28.497 193 108 5 427 611 122 292 2.53e-13 72.0
Msa0127160 MtrunA17_Chr4g0054571 47.541 61 32 0 470 530 150 210 2.97e-13 71.6
Msa0127160 MtrunA17_Chr4g0054561 55.556 54 24 0 470 523 155 208 7.72e-13 70.1
Msa0127160 MtrunA17_Chr4g0033281 31.944 144 82 3 470 611 153 282 9.16e-13 70.1
Msa0127160 MtrunA17_Chr2g0333641 24.510 204 138 5 452 652 116 306 1.46e-12 69.3
Msa0127160 MtrunA17_Chr4g0052821 30.723 166 84 5 458 609 283 431 1.80e-12 70.1
Msa0127160 MtrunA17_Chr0c01g0489461 28.387 155 96 4 471 610 197 351 4.98e-12 68.2
Msa0127160 MtrunA17_Chr5g0411541 31.500 200 109 5 451 648 141 314 5.21e-12 67.8
Msa0127160 MtrunA17_Chr5g0426851 25.641 195 123 8 471 651 102 288 8.22e-12 66.6
Msa0127160 MtrunA17_Chr4g0052841 30.435 161 92 5 459 609 283 433 8.55e-12 68.2
Msa0127160 MtrunA17_Chr3g0141091 32.544 169 84 6 444 609 149 290 9.88e-12 67.0
Msa0127160 MtrunA17_Chr2g0333611 29.577 142 84 4 471 609 46 174 1.12e-11 65.1
Msa0127160 MtrunA17_Chr8g0336681 26.543 162 95 4 457 609 148 294 2.11e-11 65.9
Msa0127160 MtrunA17_Chr1g0153241 51.786 56 27 0 471 526 96 151 3.13e-11 64.3
Msa0127160 MtrunA17_Chr2g0298751 49.091 55 28 0 461 515 43 97 9.88e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127160 AT4G09820.1 68.396 212 58 3 4 207 8 218 9.06e-99 312
Msa0127160 AT4G09820.1 39.355 310 118 8 351 655 271 515 1.83e-53 192
Msa0127160 AT5G41315.3 32.263 685 353 20 13 651 19 638 1.22e-90 295
Msa0127160 AT5G41315.1 32.263 685 353 20 13 651 14 633 1.27e-90 295
Msa0127160 AT5G41315.2 32.263 685 353 20 13 651 22 641 1.98e-90 294
Msa0127160 AT1G63650.3 42.248 258 129 6 1 242 1 254 4.09e-54 195
Msa0127160 AT1G63650.3 29.930 284 152 8 360 630 326 575 1.10e-29 124
Msa0127160 AT1G63650.1 42.248 258 129 6 1 242 1 254 4.09e-54 195
Msa0127160 AT1G63650.1 29.930 284 152 8 360 630 326 575 1.10e-29 124
Msa0127160 AT1G63650.2 42.248 258 129 6 1 242 1 254 4.09e-54 195
Msa0127160 AT1G63650.2 29.930 284 152 8 360 630 326 575 1.10e-29 124
Msa0127160 AT4G00480.3 37.915 211 108 5 2 192 12 219 4.94e-37 145
Msa0127160 AT4G00480.3 28.082 292 167 11 352 629 241 503 3.50e-17 85.5
Msa0127160 AT4G00480.1 37.915 211 108 5 2 192 12 219 8.22e-37 145
Msa0127160 AT4G00480.1 27.302 315 182 12 352 652 241 522 9.60e-18 87.4
Msa0127160 AT4G00480.2 37.915 211 108 5 2 192 12 219 3.27e-36 144
Msa0127160 AT4G00480.2 27.302 315 182 12 352 652 241 522 1.99e-17 86.7
Msa0127160 AT1G32640.1 32.124 193 108 6 13 190 68 252 8.98e-24 106
Msa0127160 AT1G32640.1 33.951 162 96 3 470 629 452 604 1.29e-17 87.4
Msa0127160 AT4G17880.1 30.256 195 112 5 13 190 63 250 4.46e-23 104
Msa0127160 AT4G17880.1 35.000 160 96 2 470 629 416 567 2.72e-19 92.4
Msa0127160 AT1G12860.2 37.195 164 99 2 467 629 264 424 4.96e-22 99.8
Msa0127160 AT5G46760.1 31.959 194 98 6 13 186 52 231 1.89e-21 99.4
Msa0127160 AT5G46760.1 33.750 160 102 2 470 629 415 570 2.46e-18 89.4
Msa0127160 AT1G12860.1 36.810 163 99 2 467 628 264 423 2.73e-21 97.8
Msa0127160 AT1G01260.1 33.178 214 116 9 9 203 42 247 1.49e-19 93.2
Msa0127160 AT1G01260.1 44.578 83 45 1 448 529 410 492 8.64e-14 75.1
Msa0127160 AT1G01260.2 33.178 214 116 9 9 203 42 247 1.49e-19 93.2
Msa0127160 AT1G01260.2 44.578 83 45 1 448 529 410 492 8.64e-14 75.1
Msa0127160 AT1G01260.3 33.178 214 116 9 9 203 42 247 1.49e-19 93.2
Msa0127160 AT1G01260.3 44.578 83 45 1 448 529 410 492 8.64e-14 75.1
Msa0127160 AT3G26744.6 36.145 166 102 3 467 629 304 468 1.66e-18 89.4
Msa0127160 AT3G26744.1 35.294 170 106 3 467 633 304 472 4.28e-18 88.2
Msa0127160 AT3G26744.4 35.294 170 106 3 467 633 304 472 4.28e-18 88.2
Msa0127160 AT3G26744.2 35.294 170 106 3 467 633 304 472 4.28e-18 88.2
Msa0127160 AT5G46830.1 27.670 206 125 6 4 190 25 225 1.87e-17 86.3
Msa0127160 AT5G46830.1 33.742 163 92 6 470 629 343 492 1.79e-12 70.9
Msa0127160 AT2G46510.1 28.796 191 115 5 22 197 62 246 5.40e-17 85.1
Msa0127160 AT2G46510.1 62.963 54 20 0 470 523 395 448 1.21e-14 77.8
Msa0127160 AT4G37850.2 33.133 166 91 5 458 619 145 294 6.84e-17 82.8
Msa0127160 AT4G37850.1 33.133 166 91 5 458 619 145 294 6.84e-17 82.8
Msa0127160 AT2G22760.2 33.533 167 89 5 456 608 96 254 1.12e-14 75.5
Msa0127160 AT2G22760.1 33.533 167 89 5 456 608 96 254 2.61e-14 74.7
Msa0127160 AT4G16430.1 41.748 103 56 3 433 535 286 384 2.37e-13 73.2
Msa0127160 AT4G16430.1 29.381 194 114 6 8 190 45 226 2.32e-11 67.0
Msa0127160 AT4G00870.1 52.459 61 29 0 470 530 249 309 4.67e-13 72.0
Msa0127160 AT2G16910.1 43.902 82 40 1 448 523 286 367 4.80e-13 72.8
Msa0127160 AT4G38070.1 30.405 148 86 4 439 569 54 201 5.81e-13 69.7
Msa0127160 AT2G22770.1 29.299 157 104 2 461 610 123 279 7.26e-13 70.5
Msa0127160 AT1G72210.1 26.842 190 125 5 471 652 127 310 1.19e-12 70.1
Msa0127160 AT5G57150.3 35.714 98 58 1 468 560 53 150 5.81e-12 66.2
Msa0127160 AT5G57150.5 35.714 98 58 1 468 560 52 149 7.03e-12 65.9
Msa0127160 AT2G22750.4 38.384 99 48 3 434 519 105 203 7.28e-12 67.8
Msa0127160 AT2G22750.3 38.384 99 48 3 434 519 105 203 7.34e-12 67.8
Msa0127160 AT2G22750.5 38.384 99 48 3 434 519 101 199 7.57e-12 67.4
Msa0127160 AT5G57150.2 35.714 98 58 1 468 560 53 150 7.85e-12 65.9
Msa0127160 AT2G22750.1 38.384 99 48 3 434 519 77 175 8.04e-12 67.4
Msa0127160 AT5G57150.1 35.714 98 58 1 468 560 52 149 8.04e-12 66.2
Msa0127160 AT2G22750.2 38.384 99 48 3 434 519 77 175 8.65e-12 67.0
Msa0127160 AT4G29930.4 33.588 131 70 5 468 590 52 173 1.19e-11 64.3
Msa0127160 AT4G29930.2 40.845 71 42 0 461 531 45 115 1.45e-11 65.1
Msa0127160 AT4G29930.6 40.845 71 42 0 461 531 45 115 1.66e-11 65.1
Msa0127160 AT4G29930.5 40.845 71 42 0 461 531 45 115 2.45e-11 64.7
Msa0127160 AT4G29930.1 37.895 95 53 2 461 555 45 133 2.49e-11 65.1
Msa0127160 AT5G57150.4 35.714 98 58 1 468 560 53 150 2.67e-11 65.1
Msa0127160 AT4G29930.3 40.845 71 42 0 461 531 45 115 4.31e-11 64.3
Msa0127160 AT4G29930.7 40.845 71 42 0 461 531 45 115 4.31e-11 64.3
Msa0127160 AT3G61950.6 29.333 150 86 4 470 612 128 264 7.87e-11 63.9

Find 181 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGTTGTGAGGTATAATT+TGG 0.209014 1_3:+56358724 None:intergenic
CTCTTTGTGTATGCCCTTCC+TGG 0.213816 1_3:+56362308 None:intergenic
TCACGTGTTTGATGAAATTA+AGG 0.245342 1_3:+56361454 None:intergenic
GAGGTGGTGGAGGTTGTTTC+CGG 0.247905 1_3:+56359434 None:intergenic
ATGGACAAAGCTTCTATATT+AGG 0.273239 1_3:-56359176 Msa0127160:CDS
GGTTCCATTCGTGACGAAAA+TGG 0.283595 1_3:-56359195 Msa0127160:CDS
TTCATCCATGTCGTCTTGAT+TGG 0.294810 1_3:+56361296 None:intergenic
TTGAAATGCCCGATGATATT+CGG 0.302845 1_3:-56361146 Msa0127160:CDS
CATAGAGTTCTCTTAGTTGC+TGG 0.317996 1_3:+56365732 None:intergenic
GAGTTGAGGATTGAGGTTAT+TGG 0.318064 1_3:-56358861 Msa0127160:CDS
TAGAAGTGGTGTAACGGTTT+TGG 0.322614 1_3:-56359066 Msa0127160:CDS
AGGATTGTTGCTTGATGTTA+TGG 0.331605 1_3:-56358895 Msa0127160:CDS
GTGAAGGAAAATGGTGGAAA+TGG 0.337697 1_3:-56358786 Msa0127160:CDS
GTGGAGGTTGTTTCCGGTGG+TGG 0.345072 1_3:+56359440 None:intergenic
TGATTTGACATACAGGATTC+TGG 0.346846 1_3:-56365849 Msa0127160:intron
TTACCCACGGGTTCTTCAAT+TGG 0.352267 1_3:+56360997 None:intergenic
AAATTATTTGACCCGTCGTT+TGG 0.354952 1_3:+56361114 None:intergenic
GGAGGTTGCTGCTTCGGTTC+AGG 0.361607 1_3:-56358970 Msa0127160:CDS
GGTTGAGGAAGTTGGATTAG+AGG 0.367769 1_3:+56361371 None:intergenic
GAGGCATTGGGAGGTGGTGG+AGG 0.370793 1_3:+56359424 None:intergenic
CCCAATCCTCTTTCACCAAC+TGG 0.373009 1_3:-56359490 Msa0127160:CDS
TGAAATGCCCGATGATATTC+GGG 0.373074 1_3:-56361145 Msa0127160:CDS
CCTCCTGCATCATGGGTTTG+AGG 0.379106 1_3:+56359341 None:intergenic
TGAGACGGAGGTTGCTGCTT+CGG 0.382360 1_3:-56358976 Msa0127160:CDS
TTTGAGGAGGCATTGGGAGG+TGG 0.387314 1_3:+56359418 None:intergenic
AGAACCATTCAGATTCTGTT+AGG 0.392300 1_3:+56365642 None:intergenic
TGTTCCCTTGCCGCGTAACT+TGG 0.394010 1_3:+56359307 None:intergenic
AGGGCTAAGGTGAAGGAAAA+TGG 0.395483 1_3:-56358795 Msa0127160:CDS
TCATCCATGTCGTCTTGATT+GGG 0.400362 1_3:+56361297 None:intergenic
ATGTGATCGGTTGAGGAAGT+TGG 0.404252 1_3:+56361363 None:intergenic
GGAGTAAGTGATGTAGTTGA+TGG 0.405895 1_3:+56359514 None:intergenic
TAAGCTTCAAAACATGTTGC+AGG 0.406229 1_3:-56366788 Msa0127160:CDS
TTACTAGTTGTGAGTAATCA+AGG 0.407904 1_3:-56361075 Msa0127160:CDS
CTCCTGCATCATGGGTTTGA+GGG 0.412275 1_3:+56359342 None:intergenic
CAAGTTCAACTACCATCTTC+AGG 0.412992 1_3:-56360967 Msa0127160:intron
TCAGATTCTGTTAGGTCCTC+AGG 0.415594 1_3:+56365650 None:intergenic
GTGGTGGCAGCGCGTGGAAG+TGG 0.418946 1_3:+56359456 None:intergenic
GGATGTATTTGAGGAGGCAT+TGG 0.421906 1_3:+56359411 None:intergenic
GTTGAGGGAGTTGAGGATTG+AGG 0.424843 1_3:-56358868 Msa0127160:CDS
TGTTCTGAGAGTGCTGGCTT+TGG 0.425999 1_3:+56361399 None:intergenic
GTTCAGTCTTCGCTCAATAA+TGG 0.426434 1_3:-56358837 Msa0127160:CDS
TATTGAGAGTGATGCTTTGT+TGG 0.427384 1_3:-56358940 Msa0127160:CDS
AACCCATCTTTGTGTTGAAT+CGG 0.430063 1_3:+56361020 None:intergenic
AGGGGTCACCTCCTGCATCA+TGG 0.433115 1_3:+56359333 None:intergenic
TGAGTTTGGCACAACGGATA+AGG 0.438119 1_3:-56361859 Msa0127160:intron
TTGGATGGCGTAGTTGAGTT+TGG 0.438891 1_3:-56361873 Msa0127160:CDS
TCCTCTGCACTAACCTCCAT+TGG 0.444642 1_3:+56365773 None:intergenic
GAGGAGGCATTGGGAGGTGG+TGG 0.453489 1_3:+56359421 None:intergenic
AGTGGACTTATAGCCTCTTC+TGG 0.455737 1_3:-56366747 Msa0127160:CDS
ACTATTAATTTACCTGAAGA+TGG 0.457762 1_3:+56360955 None:intergenic
CCAGTTGGTGAAAGAGGATT+GGG 0.458813 1_3:+56359490 None:intergenic
GCAGCGCGTGGAAGTGGTGG+TGG 0.460378 1_3:+56359462 None:intergenic
TCTGAGAGTGCTGGCTTTGG+CGG 0.460852 1_3:+56361402 None:intergenic
TGACATACAGGATTCTGGTA+TGG 0.463484 1_3:-56365844 Msa0127160:intron
TCAGAATCTGAAGACGAAAC+AGG 0.465408 1_3:-56361231 Msa0127160:CDS
TGGTAATGTTGAGGGAGTTG+AGG 0.465496 1_3:-56358875 Msa0127160:CDS
GGGTCCAACAGAGAAGAAAA+AGG 0.466081 1_3:-56359042 Msa0127160:CDS
TCCAGTTGGTGAAAGAGGAT+TGG 0.466348 1_3:+56359489 None:intergenic
CTGTGAAGAGGATGTATTTG+AGG 0.466470 1_3:+56359402 None:intergenic
GTGGTGGTGGTTGGTCCAGT+TGG 0.466928 1_3:+56359475 None:intergenic
GATTGGGATTTGTAGAGGGT+GGG 0.467067 1_3:+56361313 None:intergenic
TCCCTTGCCGCGTAACTTGG+CGG 0.467265 1_3:+56359310 None:intergenic
TGAAGGAAAATGGTGGAAAT+GGG 0.468007 1_3:-56358785 Msa0127160:CDS
GTTGGTCCAGTTGGTGAAAG+AGG 0.468465 1_3:+56359484 None:intergenic
GACATACAGGATTCTGGTAT+GGG 0.470639 1_3:-56365843 Msa0127160:intron
TTCAAGAGCTATTCTAGCTA+AGG 0.470826 1_3:-56362237 Msa0127160:intron
ATTGAGTGTTTGCATAGAGA+AGG 0.471413 1_3:-56358915 Msa0127160:CDS
GATGTATTTGAGGAGGCATT+GGG 0.472065 1_3:+56359412 None:intergenic
TGTGGTATGCATTCCTGTAT+TGG 0.472277 1_3:-56361892 Msa0127160:CDS
CAATGTTCCATTGTGTTGAC+TGG 0.472479 1_3:+56359549 None:intergenic
TGCATCATGGGTTTGAGGGG+AGG 0.472863 1_3:+56359346 None:intergenic
ACACAAAGAGACAGCATGTA+TGG 0.473379 1_3:-56362295 Msa0127160:CDS
CTCCGCCAAGTTACGCGGCA+AGG 0.483118 1_3:-56359312 Msa0127160:CDS
TGATTGGGATTTGTAGAGGG+TGG 0.486223 1_3:+56361312 None:intergenic
AAACCGATTCAACACAAAGA+TGG 0.487993 1_3:-56361023 Msa0127160:CDS
TTGCCGCGTAACTTGGCGGA+GGG 0.490478 1_3:+56359314 None:intergenic
TTCGTCGCTCCGCGAGGACA+TGG 0.493393 1_3:+56359261 None:intergenic
GGGGTCACCTCCTGCATCAT+GGG 0.493705 1_3:+56359334 None:intergenic
AGCTTACTGCCTAGTGGAGA+TGG 0.494225 1_3:+56366805 None:intergenic
TGCCCGATGATATTCGGGTT+GGG 0.496241 1_3:-56361140 Msa0127160:CDS
GTGGCAGCGCGTGGAAGTGG+TGG 0.496583 1_3:+56359459 None:intergenic
TCAACTACGCCATCCAATAC+AGG 0.497764 1_3:+56361879 None:intergenic
CTTCCACGCGCTGCCACCAC+CGG 0.497913 1_3:-56359453 Msa0127160:CDS
TATATATAAGGTTGCCAGGA+AGG 0.500355 1_3:-56362322 Msa0127160:intron
TCCCCTCAAACCCATGATGC+AGG 0.500911 1_3:-56359344 Msa0127160:CDS
CTCTATGAATCATTGTCTGC+CGG 0.501432 1_3:-56365716 Msa0127160:CDS
AGGATTCTGGTATGGGGTGA+TGG 0.503669 1_3:-56365836 Msa0127160:CDS
TTTCCGGTGGTGGCAGCGCG+TGG 0.505786 1_3:+56359450 None:intergenic
GCACTATATATAAGGTTGCC+AGG 0.507294 1_3:-56362326 Msa0127160:intron
GGTAGGAATGTGATCGGTTG+AGG 0.510024 1_3:+56361356 None:intergenic
CTCAACTGCTTTCGCTCTCG+TGG 0.513238 1_3:+56358995 None:intergenic
TCCTGCATCATGGGTTTGAG+GGG 0.521239 1_3:+56359343 None:intergenic
TGTTGCGGAGTTGAGGGCTA+AGG 0.522771 1_3:-56358808 Msa0127160:CDS
GTTGTTCAGTCTCTATCTGA+CGG 0.523038 1_3:+56359093 None:intergenic
CGCGTGGAAGTGGTGGTGGT+TGG 0.524425 1_3:+56359466 None:intergenic
GTTGAGTGTTCTGAGAGTGC+TGG 0.525057 1_3:+56361393 None:intergenic
CTGCCTAGTGGAGATGGAGC+AGG 0.530196 1_3:+56366811 None:intergenic
TGATGTTATGGTAATGTTGA+GGG 0.530343 1_3:-56358883 Msa0127160:CDS
AGTTGGTGGATTTGTCTCTC+CGG 0.531556 1_3:+56365697 None:intergenic
CTTGCCGCGTAACTTGGCGG+AGG 0.532091 1_3:+56359313 None:intergenic
GTGGTGGAGGTTGTTTCCGG+TGG 0.532605 1_3:+56359437 None:intergenic
TACGAGTCCACGTGTCCTGA+CGG 0.533941 1_3:+56361048 None:intergenic
TCCGCCAAGTTACGCGGCAA+GGG 0.540559 1_3:-56359311 Msa0127160:CDS
CGGGTTGGGTCGCCAAACGA+CGG 0.541893 1_3:-56361126 Msa0127160:CDS
TCAATCTGCATCAACTCACT+TGG 0.542441 1_3:+56361165 None:intergenic
GCACATGGACGACGAGTTGG+TGG 0.545968 1_3:+56365683 None:intergenic
GACCCAACCCGAATATCATC+GGG 0.547947 1_3:+56361138 None:intergenic
AGTAATCAAGGAAACCCGTC+AGG 0.550819 1_3:-56361063 Msa0127160:CDS
AACCGATTCAACACAAAGAT+GGG 0.550895 1_3:-56361022 Msa0127160:CDS
GCTTTGGCGGTAAAGAGTGT+TGG 0.551248 1_3:+56361415 None:intergenic
GCTCCTGCTCCATCTCCACT+AGG 0.555748 1_3:-56366814 Msa0127160:CDS
TCTTGATTGGGATTTGTAGA+GGG 0.555864 1_3:+56361309 None:intergenic
GAGAGCGAAAGCAGTTGAGA+CGG 0.556085 1_3:-56358991 Msa0127160:CDS
ATGCCCGATGATATTCGGGT+TGG 0.557418 1_3:-56361141 Msa0127160:CDS
ACGAGTCCACGTGTCCTGAC+GGG 0.558448 1_3:+56361049 None:intergenic
AGCGAAAGCAGTTGAGACGG+AGG 0.558576 1_3:-56358988 Msa0127160:CDS
CGACCCAACCCGAATATCAT+CGG 0.559441 1_3:+56361137 None:intergenic
AGGACCTAACAGAATCTGAA+TGG 0.560680 1_3:-56365646 Msa0127160:CDS
ACTGAACAACAAAGTAGAAG+TGG 0.562802 1_3:-56359080 Msa0127160:CDS
GAAGCACATGGACGACGAGT+TGG 0.564910 1_3:+56365680 None:intergenic
AGACAGCATGTATGGCTCAC+GGG 0.565294 1_3:-56362287 Msa0127160:CDS
GGGTTGGGTCGCCAAACGAC+GGG 0.566932 1_3:-56361125 Msa0127160:CDS
ATATATAAGGTTGCCAGGAA+GGG 0.568067 1_3:-56362321 Msa0127160:intron
TTTGAGGGGAGGTTTCGTCA+TGG 0.570500 1_3:+56359357 None:intergenic
TCGCTCCGCGAGGACATGGT+TGG 0.570780 1_3:+56359265 None:intergenic
GTGAGGATTGTTGAAGAATG+TGG 0.571926 1_3:-56359020 Msa0127160:CDS
AACTTGTAGCGAATTACCCA+CGG 0.574291 1_3:+56360984 None:intergenic
ATGTGCTTCCTTGTCACCTG+AGG 0.574896 1_3:-56365666 Msa0127160:CDS
GTATTTGAGGAGGCATTGGG+AGG 0.574965 1_3:+56359415 None:intergenic
TTGATGTTATGGTAATGTTG+AGG 0.575487 1_3:-56358884 Msa0127160:CDS
GTCTTGATTGGGATTTGTAG+AGG 0.577629 1_3:+56361308 None:intergenic
TGGGAAGAAAGTTAGTATTG+TGG 0.581181 1_3:-56358766 Msa0127160:CDS
GGAGTTGAGGGCTAAGGTGA+AGG 0.582755 1_3:-56358802 Msa0127160:CDS
TGTAGAGGGTGGGTCTGCCA+TGG 0.583492 1_3:+56361323 None:intergenic
TGCCGCGTAACTTGGCGGAG+GGG 0.583617 1_3:+56359315 None:intergenic
CTCTACAATAGCTGTCATTG+AGG 0.583824 1_3:+56361188 None:intergenic
CGGGTCAAATAATTTAGACT+CGG 0.585244 1_3:-56361106 Msa0127160:CDS
ATGATGACGTACAGTTGTTG+TGG 0.586185 1_3:+56366715 None:intergenic
GTCTGCCATGGTGTACATGA+TGG 0.591460 1_3:+56361335 None:intergenic
GACCCCTCCGCCAAGTTACG+CGG 0.591527 1_3:-56359317 Msa0127160:CDS
GAGACAGCATGTATGGCTCA+CGG 0.591616 1_3:-56362288 Msa0127160:CDS
CTGCAGTGCAATCTGTTCAG+TGG 0.594326 1_3:-56366765 Msa0127160:CDS
TGATGACGTACAGTTGTTGT+GGG 0.599654 1_3:+56366716 None:intergenic
CGTAGTTGAGTTTGGCACAA+CGG 0.601213 1_3:-56361865 Msa0127160:CDS
TGTTAGGTCCTCAGGTGACA+AGG 0.602958 1_3:+56365658 None:intergenic
GTGGGCAAAGTTGCCAGAAG+AGG 0.606474 1_3:+56366734 None:intergenic
TTGGCGCTCAGCTCGTCTTG+CGG 0.606797 1_3:+56359284 None:intergenic
ACAAAGTAGAAGTGGTGTAA+CGG 0.607690 1_3:-56359072 Msa0127160:CDS
GGTTCCAATTGAAGAACCCG+TGG 0.613679 1_3:-56361001 Msa0127160:CDS
AGGAAACCCGTCAGGACACG+TGG 0.614112 1_3:-56361055 Msa0127160:CDS
TCGAAAGACAGTGCAACCAA+TGG 0.615013 1_3:-56365789 Msa0127160:CDS
TAAGTGATGTAGTTGATGGA+AGG 0.615344 1_3:+56359518 None:intergenic
ACCAATGGAGGTTAGTGCAG+AGG 0.616075 1_3:-56365774 Msa0127160:CDS
AAAGACAGTGCAACCAATGG+AGG 0.619772 1_3:-56365786 Msa0127160:CDS
ATGGCTCACGGGTGCAAATG+AGG 0.624999 1_3:-56362276 Msa0127160:CDS
AAAATGCACTAAATGTTGTG+AGG 0.625427 1_3:+56358714 None:intergenic
GTATGCATTCCTGTATTGGA+TGG 0.632942 1_3:-56361888 Msa0127160:CDS
TGAGTTACTTACCCTACACC+AGG 0.633728 1_3:+56365590 None:intergenic
TGGGGTGATGGATATTACAA+TGG 0.635135 1_3:-56365824 Msa0127160:CDS
CTCTTCTTCGTCGCTCCGCG+AGG 0.637033 1_3:+56359255 None:intergenic
GAAGAGAGAAACTCAACGAG+AGG 0.637311 1_3:-56359238 Msa0127160:CDS
TTCAAAACCAGTCAACACAA+TGG 0.637914 1_3:-56359556 Msa0127160:CDS
AAATCCCAATCAAGACGACA+TGG 0.638757 1_3:-56361301 Msa0127160:CDS
GCCATGGTGTACATGATGGT+AGG 0.641072 1_3:+56361339 None:intergenic
GCTAAGGTGAAGGAAAATGG+TGG 0.644258 1_3:-56358792 Msa0127160:CDS
TCAGGTGACAAGGAAGCACA+TGG 0.644950 1_3:+56365668 None:intergenic
GGAGGTATGGGACTGTGAAG+AGG 0.648050 1_3:+56359390 None:intergenic
CCTCAAACCCATGATGCAGG+AGG 0.651461 1_3:-56359341 Msa0127160:CDS
TGAAGAGGATGTATTTGAGG+AGG 0.655583 1_3:+56359405 None:intergenic
ACATACAGGATTCTGGTATG+GGG 0.662130 1_3:-56365842 Msa0127160:intron
GCTCACGGGTGCAAATGAGG+TGG 0.662470 1_3:-56362273 Msa0127160:CDS
GTTGGTGAAAGAGGATTGGG+AGG 0.663743 1_3:+56359493 None:intergenic
ACTTGTAGCGAATTACCCAC+GGG 0.667266 1_3:+56360985 None:intergenic
CATGATGGTAGGAATGTGAT+CGG 0.682068 1_3:+56361350 None:intergenic
AGACGACATGGATGAAGACG+AGG 0.694697 1_3:-56361289 Msa0127160:CDS
GAGCGCCAACCATGTCCTCG+CGG 0.700534 1_3:-56359270 Msa0127160:CDS
GTTCCAATTGAAGAACCCGT+GGG 0.703614 1_3:-56361000 Msa0127160:CDS
GAATCTGAAGACGAAACAGG+AGG 0.710791 1_3:-56361228 Msa0127160:CDS
TCCTACCATCATGTACACCA+TGG 0.714693 1_3:-56361340 Msa0127160:CDS
CTGTCATTGAGGTTGCACGT+CGG 0.747028 1_3:+56361199 None:intergenic
GTTACTTACCCTACACCAGG+AGG 0.750268 1_3:+56365593 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTAATTTAAATTAT+AGG - chr1_3:56359200-56359219 Msa0127160:CDS 0.0%
!! AATTAAAATCTAAAAAAATG+TGG + chr1_3:56360092-56360111 None:intergenic 10.0%
!! TAATAATATTGAAATAACTT+TGG - chr1_3:56360564-56360583 Msa0127160:intron 10.0%
!!! AAAATTATTTTTTGTGTTAA+AGG + chr1_3:56360835-56360854 None:intergenic 10.0%
!!! ATTTTATTTTTGGAAAAAAT+TGG - chr1_3:56361416-56361435 Msa0127160:CDS 10.0%
!!! TTTTATTTTTGGAAAAAATT+GGG - chr1_3:56361417-56361436 Msa0127160:CDS 10.0%
!! AATAAAGATATAATATTTGA+CGG + chr1_3:56361541-56361560 None:intergenic 10.0%
!! AAATTAAAATTAGATAAAAC+GGG + chr1_3:56363535-56363554 None:intergenic 10.0%
!! CAAATTAAAATTAGATAAAA+CGG + chr1_3:56363536-56363555 None:intergenic 10.0%
!! AAAAAAAAAACATAAGTATA+AGG + chr1_3:56364016-56364035 None:intergenic 10.0%
!!! TTAATTAATTTCTAGATTTT+GGG + chr1_3:56364748-56364767 None:intergenic 10.0%
!!! TTGCATTTTTATTTGTTTTT+CGG + chr1_3:56359306-56359325 None:intergenic 15.0%
!! TAAAATTAATAACCATTCTA+CGG - chr1_3:56359532-56359551 Msa0127160:CDS 15.0%
!!! TATATTATATGACTTTTGAT+TGG + chr1_3:56360387-56360406 None:intergenic 15.0%
!!! TATTTTTACATAGACAAAAT+AGG - chr1_3:56361083-56361102 Msa0127160:CDS 15.0%
!!! GATTTTCTATTAGATTAATT+TGG + chr1_3:56361462-56361481 None:intergenic 15.0%
!! TATATTACATAACAAATAGA+AGG + chr1_3:56362259-56362278 None:intergenic 15.0%
!!! TTCTATTTGTTATGTAATAT+AGG - chr1_3:56362258-56362277 Msa0127160:CDS 15.0%
!! TATGAAATTATTACTACTTT+AGG - chr1_3:56362446-56362465 Msa0127160:intron 15.0%
!!! GTATTATTTTAATCTTATGT+AGG + chr1_3:56362681-56362700 None:intergenic 15.0%
!! ACATAGTATTTAGTTATATA+TGG - chr1_3:56362705-56362724 Msa0127160:intron 15.0%
!!! TTTTAATATTCTACTCTAAT+AGG - chr1_3:56362743-56362762 Msa0127160:intron 15.0%
!! ATTATATTGCACTATATATA+AGG - chr1_3:56363208-56363227 Msa0127160:intron 15.0%
!!! TAGATAAAAAGTACTATTTT+GGG + chr1_3:56363597-56363616 None:intergenic 15.0%
!!! TTAGATAAAAAGTACTATTT+TGG + chr1_3:56363598-56363617 None:intergenic 15.0%
!!! AAATAGTACTTTTTATCTAA+TGG - chr1_3:56363598-56363617 Msa0127160:intron 15.0%
!!! CTTAATTAATTTCTAGATTT+TGG + chr1_3:56364749-56364768 None:intergenic 15.0%
!! AGTAAAACATTTATATAAAG+AGG - chr1_3:56365401-56365420 Msa0127160:intron 15.0%
!!! GTTTGAGTTTTTTTTTTTTT+TGG + chr1_3:56365477-56365496 None:intergenic 15.0%
!! TTGTTATAGTGTCAAAATTT+AGG - chr1_3:56359038-56359057 Msa0127160:CDS 20.0%
!! AAATTGCAAAATGCATATAA+TGG + chr1_3:56359112-56359131 None:intergenic 20.0%
!!! TTATATGCATTTTGCAATTT+TGG - chr1_3:56359112-56359131 Msa0127160:CDS 20.0%
!!! ATCATTGATGTTTGAATTTT+TGG - chr1_3:56359144-56359163 Msa0127160:CDS 20.0%
!! TATACACACTCTTAATTATT+TGG + chr1_3:56359176-56359195 None:intergenic 20.0%
!! AGTATTAACAAGATTCAATA+TGG + chr1_3:56360279-56360298 None:intergenic 20.0%
!!! TAATTTTGTTACATTTTGAG+TGG - chr1_3:56360339-56360358 Msa0127160:intron 20.0%
!! TTCAATATTATTATGCTTCA+TGG + chr1_3:56360557-56360576 None:intergenic 20.0%
!! AATATTGAAATAACTTTGGT+AGG - chr1_3:56360568-56360587 Msa0127160:intron 20.0%
!! TTAGGAGAATAAAGAAATTA+TGG - chr1_3:56360681-56360700 Msa0127160:intron 20.0%
!!! GTTTTTATGTTGAAAAATAG+AGG - chr1_3:56361122-56361141 Msa0127160:CDS 20.0%
!!! TTGCTAGTTTGTAAAAATTA+AGG + chr1_3:56361222-56361241 None:intergenic 20.0%
!!! TTAGATTAATTTGGCAAATT+TGG + chr1_3:56361453-56361472 None:intergenic 20.0%
!!! ATATCATTGCTATCTTTTAA+GGG + chr1_3:56361513-56361532 None:intergenic 20.0%
!!! TATATCATTGCTATCTTTTA+AGG + chr1_3:56361514-56361533 None:intergenic 20.0%
!!! AGTTAATTTGAATTCTGAAA+AGG + chr1_3:56361886-56361905 None:intergenic 20.0%
!!! AATTACTACCATTCTATTTT+TGG - chr1_3:56361933-56361952 Msa0127160:intron 20.0%
!!! ATATGTGAAAAGTTTGAAAT+TGG + chr1_3:56361997-56362016 None:intergenic 20.0%
!!! TTTTTTTTATAGCTTCACAT+AGG - chr1_3:56362047-56362066 Msa0127160:intron 20.0%
!! AGACTAATCTACATTATTTA+TGG + chr1_3:56362184-56362203 None:intergenic 20.0%
!! AAAAGAACCAACAATTAATT+TGG + chr1_3:56362419-56362438 None:intergenic 20.0%
!!! ATTAATTGTTGGTTCTTTTT+AGG - chr1_3:56362420-56362439 Msa0127160:intron 20.0%
!!! TTAATTGTTGGTTCTTTTTA+GGG - chr1_3:56362421-56362440 Msa0127160:intron 20.0%
!! TTAAAATGATTCATTAAGAG+TGG + chr1_3:56362568-56362587 None:intergenic 20.0%
!! AAGAGTAGTGTTTAATAATA+AGG - chr1_3:56362630-56362649 Msa0127160:intron 20.0%
!! GTATTTAGTTATATATGGTA+CGG - chr1_3:56362710-56362729 Msa0127160:intron 20.0%
!!! TATAGTACCTAAATTTGTTT+AGG + chr1_3:56362840-56362859 None:intergenic 20.0%
!! CAATAATCTTATGTACTAAT+CGG + chr1_3:56363337-56363356 None:intergenic 20.0%
!! TACTTCCTATTAGAATTAAA+TGG + chr1_3:56363563-56363582 None:intergenic 20.0%
!! ATTAATTAAGCACATATTGA+TGG - chr1_3:56364759-56364778 Msa0127160:intron 20.0%
!!! ATCTTGATAATATATTGCAT+GGG + chr1_3:56365072-56365091 None:intergenic 20.0%
!!! TATCTTGATAATATATTGCA+TGG + chr1_3:56365073-56365092 None:intergenic 20.0%
!!! TTAGTAGAAACTATTTTTGA+AGG + chr1_3:56365180-56365199 None:intergenic 20.0%
!! CTAATTTATTATGAGTAAAC+AGG - chr1_3:56365196-56365215 Msa0127160:intron 20.0%
!! AAAGTATAAAATCATTTCGT+TGG - chr1_3:56365241-56365260 Msa0127160:intron 20.0%
!! AGAAGTTAAAGTTAAATGAT+CGG - chr1_3:56365311-56365330 Msa0127160:intron 20.0%
!!! GAGTTTTTTTTTTTTTTGGA+AGG + chr1_3:56365473-56365492 None:intergenic 20.0%
!!! TTTGTTTTAACATTAGCAAA+TGG + chr1_3:56365499-56365518 None:intergenic 20.0%
!! TTCATTCAAAATTTATGTGT+TGG + chr1_3:56365617-56365636 None:intergenic 20.0%
!!! GTTCATTATTTTAAGATCAT+TGG - chr1_3:56366326-56366345 Msa0127160:intron 20.0%
! ATAACAAAGTTCTTAGTGTT+AGG + chr1_3:56359025-56359044 None:intergenic 25.0%
!! TAGTATTAGCTTATGTGATA+TGG - chr1_3:56359645-56359664 Msa0127160:intron 25.0%
!! AGATAAGAAATAATGGAAGA+AGG + chr1_3:56359978-56359997 None:intergenic 25.0%
!!! GTTCTTTTGAAGATAAGTAA+AGG - chr1_3:56360453-56360472 Msa0127160:intron 25.0%
! TAAAGACAGAAGAATTATGT+TGG + chr1_3:56360518-56360537 None:intergenic 25.0%
! AATATTATTATGCTTCATGG+AGG + chr1_3:56360554-56360573 None:intergenic 25.0%
! TATTTATATGTCCTCTAGTT+AGG - chr1_3:56360663-56360682 Msa0127160:intron 25.0%
! AAAAGCTAACTTAGCATAAT+TGG + chr1_3:56360801-56360820 None:intergenic 25.0%
! GGAATATATATCCACAAATA+TGG - chr1_3:56361041-56361060 Msa0127160:CDS 25.0%
! ATAATAGATGTCCATATTTG+TGG + chr1_3:56361055-56361074 None:intergenic 25.0%
!! ATCGATGTGTTACAATTTTA+CGG + chr1_3:56361251-56361270 None:intergenic 25.0%
! AACGAGTAAACTTAATATAG+TGG + chr1_3:56361289-56361308 None:intergenic 25.0%
!!! GCGTCTTTTGATTTTATTTT+TGG - chr1_3:56361406-56361425 Msa0127160:CDS 25.0%
! AGAATGGTAGTAATTAAGTA+GGG + chr1_3:56361928-56361947 None:intergenic 25.0%
! TAGAATGGTAGTAATTAAGT+AGG + chr1_3:56361929-56361948 None:intergenic 25.0%
! GAAAACTTCCAAAAATAGAA+TGG + chr1_3:56361944-56361963 None:intergenic 25.0%
!!! AATAAGATGTAGCTTTAGAT+AGG - chr1_3:56362158-56362177 Msa0127160:intron 25.0%
! TTGATGTCATTGTAATCTAT+AGG - chr1_3:56362387-56362406 Msa0127160:intron 25.0%
! TCAAGTAGGATAAAATAAGT+TGG - chr1_3:56362779-56362798 Msa0127160:intron 25.0%
!!! AAGTTGGTAGTATTAAATAC+AGG - chr1_3:56362795-56362814 Msa0127160:intron 25.0%
!!! AGTTGGTAGTATTAAATACA+GGG - chr1_3:56362796-56362815 Msa0127160:intron 25.0%
!! TTAGGTTGTCATATAGTATA+AGG + chr1_3:56362822-56362841 None:intergenic 25.0%
! ATGACAACCTAAACAAATTT+AGG - chr1_3:56362830-56362849 Msa0127160:intron 25.0%
! TATTATTATTGATGTACCAC+CGG - chr1_3:56362861-56362880 Msa0127160:intron 25.0%
! GTCATTAATAATTGTGTGAT+AGG - chr1_3:56362952-56362971 Msa0127160:intron 25.0%
! CGATATTATTAATAAGTGTG+TGG - chr1_3:56363030-56363049 Msa0127160:intron 25.0%
!! ATTAATAAGTGTGTGGATTA+TGG - chr1_3:56363037-56363056 Msa0127160:intron 25.0%
! AACATGATTGATGTTATGAT+CGG + chr1_3:56363113-56363132 None:intergenic 25.0%
! TAAAATTAGATAAAACGGGT+TGG + chr1_3:56363531-56363550 None:intergenic 25.0%
! GTTCTCCATTTAATTCTAAT+AGG - chr1_3:56363555-56363574 Msa0127160:intron 25.0%
! ATAATGTTCGTGTAGTAATT+TGG - chr1_3:56363826-56363845 Msa0127160:intron 25.0%
! ACTATTAATTTACCTGAAGA+TGG + chr1_3:56364590-56364609 None:intergenic 25.0%
! ACATATAATAAGATTAGGCA+CGG - chr1_3:56364796-56364815 Msa0127160:intron 25.0%
!! TCTTGATAATATATTGCATG+GGG + chr1_3:56365071-56365090 None:intergenic 25.0%
!!! TCAACTTTGTTTTGAGTTAA+TGG - chr1_3:56365281-56365300 Msa0127160:intron 25.0%
! GAAGTTAAAGTTAAATGATC+GGG - chr1_3:56365312-56365331 Msa0127160:intron 25.0%
! AAGTTAAAGTTAAATGATCG+GGG - chr1_3:56365313-56365332 Msa0127160:intron 25.0%
! TTACAATCAACATATAGAGT+TGG + chr1_3:56365356-56365375 None:intergenic 25.0%
! ACTTCTAACAAACAACAATT+TGG - chr1_3:56365562-56365581 Msa0127160:intron 25.0%
!! ATTTTGAATGAATGAGATCT+AGG - chr1_3:56365625-56365644 Msa0127160:CDS 25.0%
!! TTTTGAATGAATGAGATCTA+GGG - chr1_3:56365626-56365645 Msa0127160:CDS 25.0%
! TTATGTTGACATCAATTCAT+TGG - chr1_3:56365761-56365780 Msa0127160:CDS 25.0%
! AAATGTTGTGAGGTATAATT+TGG + chr1_3:56366821-56366840 None:intergenic 25.0%
GTAAATAATACCGCAATTTG+AGG - chr1_3:56359060-56359079 Msa0127160:CDS 30.0%
! AGTCACAATTTTATCTGCAT+CGG + chr1_3:56359329-56359348 None:intergenic 30.0%
!! ACTGTTTTAAATTGCAGCTT+CGG + chr1_3:56359387-56359406 None:intergenic 30.0%
AACACAATGATTTGACATAC+AGG - chr1_3:56359686-56359705 Msa0127160:intron 30.0%
! GCTTGCTAGATAAGAAATAA+TGG + chr1_3:56359985-56360004 None:intergenic 30.0%
TGTAAAGAGAAAGCTAGTAT+AGG + chr1_3:56360049-56360068 None:intergenic 30.0%
TTCTTTATTCTCCTAACTAG+AGG + chr1_3:56360677-56360696 None:intergenic 30.0%
TATTCCTAAAATGTTGCTGA+CGG + chr1_3:56361027-56361046 None:intergenic 30.0%
GAGTAAACTTAATATAGTGG+CGG + chr1_3:56361286-56361305 None:intergenic 30.0%
TTTACTCGTTGTAGAGATTA+TGG - chr1_3:56361299-56361318 Msa0127160:CDS 30.0%
! AAAGATCGTTTGTTAACGTT+AGG + chr1_3:56361595-56361614 None:intergenic 30.0%
GTGTATTAGAATGTATTCAG+AGG - chr1_3:56361741-56361760 Msa0127160:intron 30.0%
CATAGGAACATAACATCAAT+TGG - chr1_3:56362064-56362083 Msa0127160:intron 30.0%
AACATAACATCAATTGGTCA+CGG - chr1_3:56362070-56362089 Msa0127160:intron 30.0%
ATCAGACTCATTGCAATATT+TGG + chr1_3:56362122-56362141 None:intergenic 30.0%
! GTCTGATTAGTTCTTGATTA+TGG - chr1_3:56362135-56362154 Msa0127160:intron 30.0%
ATAATAGAGTTGAGAGAAGT+AGG - chr1_3:56362323-56362342 Msa0127160:intron 30.0%
TAAAAAGCAACGAATTCGAA+TGG + chr1_3:56362489-56362508 None:intergenic 30.0%
GATTCATTATTCTCTCAAGT+AGG - chr1_3:56362765-56362784 Msa0127160:intron 30.0%
! TATGGATGTTAGTATTTTGC+CGG + chr1_3:56362883-56362902 None:intergenic 30.0%
! TGAAAGTGTACTTGAATCTA+TGG + chr1_3:56362901-56362920 None:intergenic 30.0%
ATCATTGGCAAAATTTCCAT+TGG - chr1_3:56363474-56363493 Msa0127160:intron 30.0%
ATTAGGTTTAGATTGTCTAG+TGG - chr1_3:56363728-56363747 Msa0127160:intron 30.0%
! CACGAACATTATTTTCATCA+CGG + chr1_3:56363818-56363837 None:intergenic 30.0%
TCACGTGTTTGATGAAATTA+AGG + chr1_3:56364091-56364110 None:intergenic 30.0%
TTACTAGTTGTGAGTAATCA+AGG - chr1_3:56364467-56364486 Msa0127160:intron 30.0%
AAAGATTAACGTTGTATGCT+TGG + chr1_3:56364686-56364705 None:intergenic 30.0%
AATTAAGCACATATTGATGG+AGG - chr1_3:56364762-56364781 Msa0127160:intron 30.0%
GGACCACATATAATAAGATT+AGG - chr1_3:56364791-56364810 Msa0127160:intron 30.0%
GTGCCTAATCTTATTATATG+TGG + chr1_3:56364797-56364816 None:intergenic 30.0%
ATATATGTATAGATCTCTGC+TGG + chr1_3:56364868-56364887 None:intergenic 30.0%
GACAATGGAATTAATTAGGA+TGG + chr1_3:56364932-56364951 None:intergenic 30.0%
GGTAGACAATGGAATTAATT+AGG + chr1_3:56364936-56364955 None:intergenic 30.0%
!!! TGATTATTTTTGGACTTTGG+TGG + chr1_3:56365012-56365031 None:intergenic 30.0%
!!! GTGTGATTATTTTTGGACTT+TGG + chr1_3:56365015-56365034 None:intergenic 30.0%
! CTTGATAATATATTGCATGG+GGG + chr1_3:56365070-56365089 None:intergenic 30.0%
AGAAACACATTAATTGCATG+CGG - chr1_3:56365430-56365449 Msa0127160:intron 30.0%
! TTGTTTGTTAGAAGTGAAGT+TGG + chr1_3:56365557-56365576 None:intergenic 30.0%
TCTAACAAACAACAATTTGG+AGG - chr1_3:56365565-56365584 Msa0127160:intron 30.0%
CTAACAAACAACAATTTGGA+GGG - chr1_3:56365566-56365585 Msa0127160:intron 30.0%
ATGGACAAAGCTTCTATATT+AGG - chr1_3:56366366-56366385 Msa0127160:intron 30.0%
! TTGATGTTATGGTAATGTTG+AGG - chr1_3:56366658-56366677 Msa0127160:intron 30.0%
! TGATGTTATGGTAATGTTGA+GGG - chr1_3:56366659-56366678 Msa0127160:intron 30.0%
!! CAATAATGGTGTTTTTGTTG+CGG - chr1_3:56366719-56366738 Msa0127160:intron 30.0%
TAAGCTTCAAAACATGTTGC+AGG - chr1_3:56358754-56358773 Msa0127160:CDS 35.0%
AACATCACAACCTCAAATTG+CGG + chr1_3:56359073-56359092 None:intergenic 35.0%
GGATTCTCAAGTCAAATCAA+CGG + chr1_3:56359358-56359377 None:intergenic 35.0%
AAATTGCAGCTTCGGTATAA+AGG + chr1_3:56359379-56359398 None:intergenic 35.0%
AAACAGTCATGTATAAACGC+AGG - chr1_3:56359400-56359419 Msa0127160:CDS 35.0%
GGTGTAACTTTAACAAAAGG+AGG + chr1_3:56359578-56359597 None:intergenic 35.0%
GACGGTGTAACTTTAACAAA+AGG + chr1_3:56359581-56359600 None:intergenic 35.0%
TGAGTTTGGTAAGAGTTTGA+CGG + chr1_3:56359599-56359618 None:intergenic 35.0%
ATGTTCATGAAGTCTGAGTT+TGG + chr1_3:56359613-56359632 None:intergenic 35.0%
TGATTTGACATACAGGATTC+TGG - chr1_3:56359693-56359712 Msa0127160:intron 35.0%
AGAACCATTCAGATTCTGTT+AGG + chr1_3:56359903-56359922 None:intergenic 35.0%
GCTCACATGTATTTAACAAC+AGG + chr1_3:56360730-56360749 None:intergenic 35.0%
ACCAAAATGCATATCTATCC+GGG + chr1_3:56360930-56360949 None:intergenic 35.0%
CACCAAAATGCATATCTATC+CGG + chr1_3:56360931-56360950 None:intergenic 35.0%
!! GATAGATATGCATTTTGGTG+AGG - chr1_3:56360931-56360950 Msa0127160:intron 35.0%
! AAAAGACGCCATTTGTTTCT+TGG + chr1_3:56361395-56361414 None:intergenic 35.0%
GACATGTCATTACAAGTTTG+TGG - chr1_3:56361678-56361697 Msa0127160:intron 35.0%
TGAGCATTATATGCTTGAAG+AGG - chr1_3:56361807-56361826 Msa0127160:intron 35.0%
CATTATATGCTTGAAGAGGA+CGG - chr1_3:56361811-56361830 Msa0127160:intron 35.0%
GAAGTAGGATTCGATTAGAA+TGG - chr1_3:56362338-56362357 Msa0127160:intron 35.0%
GAAGCAGCCAAATTAATTGT+TGG - chr1_3:56362409-56362428 Msa0127160:intron 35.0%
TAGTTATATATGGTACGGAG+TGG - chr1_3:56362715-56362734 Msa0127160:intron 35.0%
AGTTATATATGGTACGGAGT+GGG - chr1_3:56362716-56362735 Msa0127160:intron 35.0%
CTCAAAACACACAAAATCAC+AGG + chr1_3:56363179-56363198 None:intergenic 35.0%
TATATATAAGGTTGCCAGGA+AGG - chr1_3:56363220-56363239 Msa0127160:intron 35.0%
ATATATAAGGTTGCCAGGAA+GGG - chr1_3:56363221-56363240 Msa0127160:intron 35.0%
! TTCAAGAGCTATTCTAGCTA+AGG - chr1_3:56363305-56363324 Msa0127160:intron 35.0%
! TCCTCTTGTTTCTCAATCAT+TGG - chr1_3:56363459-56363478 Msa0127160:intron 35.0%
TATATTAGCACTCTAGCCAA+TGG + chr1_3:56363493-56363512 None:intergenic 35.0%
!! AATTAGATAAAACGGGTTGG+AGG + chr1_3:56363528-56363547 None:intergenic 35.0%
CATGTACAATTTACAGACTG+TGG - chr1_3:56363632-56363651 Msa0127160:intron 35.0%
GTTTAGATTGTCTAGTGGTA+TGG - chr1_3:56363733-56363752 Msa0127160:intron 35.0%
ATGTTCGTGTAGTAATTTGG+TGG - chr1_3:56363829-56363848 Msa0127160:intron 35.0%
TGTTCGTGTAGTAATTTGGT+GGG - chr1_3:56363830-56363849 Msa0127160:intron 35.0%
TCTTGATTGGGATTTGTAGA+GGG + chr1_3:56364236-56364255 None:intergenic 35.0%
TTGAAATGCCCGATGATATT+CGG - chr1_3:56364396-56364415 Msa0127160:intron 35.0%
AAATTATTTGACCCGTCGTT+TGG + chr1_3:56364431-56364450 None:intergenic 35.0%
CGGGTCAAATAATTTAGACT+CGG - chr1_3:56364436-56364455 Msa0127160:intron 35.0%
! AAACCGATTCAACACAAAGA+TGG - chr1_3:56364519-56364538 Msa0127160:intron 35.0%
! AACCGATTCAACACAAAGAT+GGG - chr1_3:56364520-56364539 Msa0127160:intron 35.0%
AACCCATCTTTGTGTTGAAT+CGG + chr1_3:56364525-56364544 None:intergenic 35.0%
TAATAAGATTAGGCACGGTT+TGG - chr1_3:56364801-56364820 Msa0127160:intron 35.0%
AATAAGATTAGGCACGGTTT+GGG - chr1_3:56364802-56364821 Msa0127160:intron 35.0%
AAAAATAATCACACCCCACA+CGG - chr1_3:56365021-56365040 Msa0127160:intron 35.0%
ACGTCTATAATTTACCGTGT+GGG + chr1_3:56365038-56365057 None:intergenic 35.0%
TTGTTAGAAGTGAAGTTGGA+TGG + chr1_3:56365553-56365572 None:intergenic 35.0%
!!! GAGGGTGTCTTTTTATTTCT+TGG - chr1_3:56365584-56365603 Msa0127160:intron 35.0%
AAACCGAATTCCCAAAAAAG+TGG - chr1_3:56365649-56365668 Msa0127160:CDS 35.0%
!!! ATGCCACTTTTTTGGGAATT+CGG + chr1_3:56365655-56365674 None:intergenic 35.0%
!!! AACATGCATGCCACTTTTTT+GGG + chr1_3:56365662-56365681 None:intergenic 35.0%
!!! AAACATGCATGCCACTTTTT+TGG + chr1_3:56365663-56365682 None:intergenic 35.0%
!!! TGTTGACTGGTTTTGAATGA+TGG + chr1_3:56365983-56366002 None:intergenic 35.0%
TTCAAAACCAGTCAACACAA+TGG - chr1_3:56365986-56366005 Msa0127160:intron 35.0%
!! TAAGTGATGTAGTTGATGGA+AGG + chr1_3:56366027-56366046 None:intergenic 35.0%
ACTGAACAACAAAGTAGAAG+TGG - chr1_3:56366462-56366481 Msa0127160:intron 35.0%
ACAAAGTAGAAGTGGTGTAA+CGG - chr1_3:56366470-56366489 Msa0127160:intron 35.0%
TATTGAGAGTGATGCTTTGT+TGG - chr1_3:56366602-56366621 Msa0127160:intron 35.0%
ATTGAGTGTTTGCATAGAGA+AGG - chr1_3:56366627-56366646 Msa0127160:intron 35.0%
! AGGATTGTTGCTTGATGTTA+TGG - chr1_3:56366647-56366666 Msa0127160:intron 35.0%
! TGAAGGAAAATGGTGGAAAT+GGG - chr1_3:56366757-56366776 Msa0127160:CDS 35.0%
TGGGAAGAAAGTTAGTATTG+TGG - chr1_3:56366776-56366795 Msa0127160:CDS 35.0%
!!! TTTTGAAGCTTACTGCCTAG+TGG + chr1_3:56358746-56358765 None:intergenic 40.0%
! TGATGACGTACAGTTGTTGT+GGG + chr1_3:56358829-56358848 None:intergenic 40.0%
! ATGATGACGTACAGTTGTTG+TGG + chr1_3:56358830-56358849 None:intergenic 40.0%
AACGTTTGAGTCAACTTCTC+TGG - chr1_3:56359458-56359477 Msa0127160:CDS 40.0%
ACGTTTGAGTCAACTTCTCT+GGG - chr1_3:56359459-56359478 Msa0127160:CDS 40.0%
CTTCAAGAAAGACCGTAGAA+TGG + chr1_3:56359547-56359566 None:intergenic 40.0%
TGACATACAGGATTCTGGTA+TGG - chr1_3:56359698-56359717 Msa0127160:intron 40.0%
GACATACAGGATTCTGGTAT+GGG - chr1_3:56359699-56359718 Msa0127160:intron 40.0%
ACATACAGGATTCTGGTATG+GGG - chr1_3:56359700-56359719 Msa0127160:intron 40.0%
!! TGGGGTGATGGATATTACAA+TGG - chr1_3:56359718-56359737 Msa0127160:intron 40.0%
CATAGAGTTCTCTTAGTTGC+TGG + chr1_3:56359813-56359832 None:intergenic 40.0%
CTCTATGAATCATTGTCTGC+CGG - chr1_3:56359826-56359845 Msa0127160:intron 40.0%
AGGACCTAACAGAATCTGAA+TGG - chr1_3:56359896-56359915 Msa0127160:intron 40.0%
ATGGTTTCTCTCAATGAGAG+AGG - chr1_3:56360700-56360719 Msa0127160:intron 40.0%
! TATCAATGCAGTTTTTCCCC+CGG - chr1_3:56360909-56360928 Msa0127160:intron 40.0%
CAAAATGCATATCTATCCGG+GGG + chr1_3:56360928-56360947 None:intergenic 40.0%
CCAAAATGCATATCTATCCG+GGG + chr1_3:56360929-56360948 None:intergenic 40.0%
TAGCATTTAAGCAACACTCG+CGG + chr1_3:56360980-56360999 None:intergenic 40.0%
CTGACGGTTCATAAATTCGT+AGG + chr1_3:56361011-56361030 None:intergenic 40.0%
! TGAACCGTCAGCAACATTTT+AGG - chr1_3:56361020-56361039 Msa0127160:CDS 40.0%
! CCATTTGTTTCTTGGAGATG+CGG + chr1_3:56361387-56361406 None:intergenic 40.0%
CGAATAAGAGTTTGCATAGC+TGG - chr1_3:56361771-56361790 Msa0127160:intron 40.0%
TTGGTCACGGTTTATGAAGA+TGG - chr1_3:56362083-56362102 Msa0127160:intron 40.0%
TGGTCACGGTTTATGAAGAT+GGG - chr1_3:56362084-56362103 Msa0127160:intron 40.0%
GCACTATATATAAGGTTGCC+AGG - chr1_3:56363216-56363235 Msa0127160:intron 40.0%
ACACAAAGAGACAGCATGTA+TGG - chr1_3:56363247-56363266 Msa0127160:intron 40.0%
GCCAATGATTGAGAAACAAG+AGG + chr1_3:56363463-56363482 None:intergenic 40.0%
! TGGCTAGAGTGCTAATATAC+AGG - chr1_3:56363494-56363513 Msa0127160:intron 40.0%
TGTGGTATGCATTCCTGTAT+TGG - chr1_3:56363650-56363669 Msa0127160:intron 40.0%
GTATGCATTCCTGTATTGGA+TGG - chr1_3:56363654-56363673 Msa0127160:intron 40.0%
!! GTGTAGTAATTTGGTGGGTT+GGG - chr1_3:56363835-56363854 Msa0127160:intron 40.0%
CATGATGGTAGGAATGTGAT+CGG + chr1_3:56364195-56364214 None:intergenic 40.0%
GTCTTGATTGGGATTTGTAG+AGG + chr1_3:56364237-56364256 None:intergenic 40.0%
AAATCCCAATCAAGACGACA+TGG - chr1_3:56364241-56364260 Msa0127160:intron 40.0%
TCATCCATGTCGTCTTGATT+GGG + chr1_3:56364248-56364267 None:intergenic 40.0%
TTCATCCATGTCGTCTTGAT+TGG + chr1_3:56364249-56364268 None:intergenic 40.0%
TCAGAATCTGAAGACGAAAC+AGG - chr1_3:56364311-56364330 Msa0127160:intron 40.0%
CTCTACAATAGCTGTCATTG+AGG + chr1_3:56364357-56364376 None:intergenic 40.0%
TCAATCTGCATCAACTCACT+TGG + chr1_3:56364380-56364399 None:intergenic 40.0%
TGAAATGCCCGATGATATTC+GGG - chr1_3:56364397-56364416 Msa0127160:intron 40.0%
AACTTGTAGCGAATTACCCA+CGG + chr1_3:56364561-56364580 None:intergenic 40.0%
CAAGTTCAACTACCATCTTC+AGG - chr1_3:56364575-56364594 Msa0127160:intron 40.0%
TAAGCACATATTGATGGAGG+AGG - chr1_3:56364765-56364784 Msa0127160:intron 40.0%
ACATATTGATGGAGGAGGAT+TGG - chr1_3:56364770-56364789 Msa0127160:intron 40.0%
ATAAGATTAGGCACGGTTTG+GGG - chr1_3:56364803-56364822 Msa0127160:intron 40.0%
!! CATTGTCTACCCCATTTTTG+CGG - chr1_3:56364945-56364964 Msa0127160:intron 40.0%
!! ATTGTCTACCCCATTTTTGC+GGG - chr1_3:56364946-56364965 Msa0127160:intron 40.0%
GCTCCACTTCTATGCAAAAT+GGG - chr1_3:56364968-56364987 Msa0127160:intron 40.0%
! AGTCCCATTTTGCATAGAAG+TGG + chr1_3:56364974-56364993 None:intergenic 40.0%
! GTGTGGGGTGTGATTATTTT+TGG + chr1_3:56365022-56365041 None:intergenic 40.0%
CGTCTATAATTTACCGTGTG+GGG + chr1_3:56365037-56365056 None:intergenic 40.0%
CACGTCTATAATTTACCGTG+TGG + chr1_3:56365039-56365058 None:intergenic 40.0%
! CAATGTTCCATTGTGTTGAC+TGG + chr1_3:56365996-56366015 None:intergenic 40.0%
GGAGTAAGTGATGTAGTTGA+TGG + chr1_3:56366031-56366050 None:intergenic 40.0%
!! GATGTATTTGAGGAGGCATT+GGG + chr1_3:56366133-56366152 None:intergenic 40.0%
TGAAGAGGATGTATTTGAGG+AGG + chr1_3:56366140-56366159 None:intergenic 40.0%
CTGTGAAGAGGATGTATTTG+AGG + chr1_3:56366143-56366162 None:intergenic 40.0%
!!! TTTCGTCATGGTTTTTGGTG+TGG + chr1_3:56366176-56366195 None:intergenic 40.0%
! TTGTCCATTTTCGTCACGAA+TGG + chr1_3:56366354-56366373 None:intergenic 40.0%
GTTGTTCAGTCTCTATCTGA+CGG + chr1_3:56366452-56366471 None:intergenic 40.0%
! TAGAAGTGGTGTAACGGTTT+TGG - chr1_3:56366476-56366495 Msa0127160:intron 40.0%
! CTCACCTTTTTCTTCTCTGT+TGG + chr1_3:56366507-56366526 None:intergenic 40.0%
CAACAGAGAAGAAAAAGGTG+AGG - chr1_3:56366505-56366524 Msa0127160:intron 40.0%
GTGAGGATTGTTGAAGAATG+TGG - chr1_3:56366522-56366541 Msa0127160:intron 40.0%
GAGTTGAGGATTGAGGTTAT+TGG - chr1_3:56366681-56366700 Msa0127160:intron 40.0%
GTTCAGTCTTCGCTCAATAA+TGG - chr1_3:56366705-56366724 Msa0127160:intron 40.0%
!! TGTTTTTGTTGCGGAGTTGA+GGG - chr1_3:56366728-56366747 Msa0127160:CDS 40.0%
! GTGAAGGAAAATGGTGGAAA+TGG - chr1_3:56366756-56366775 Msa0127160:CDS 40.0%
! AGTGGACTTATAGCCTCTTC+TGG - chr1_3:56358795-56358814 Msa0127160:CDS 45.0%
TCGAAAGACAGTGCAACCAA+TGG - chr1_3:56359753-56359772 Msa0127160:intron 45.0%
AAAGACAGTGCAACCAATGG+AGG - chr1_3:56359756-56359775 Msa0127160:intron 45.0%
!! AGTTGGTGGATTTGTCTCTC+CGG + chr1_3:56359848-56359867 None:intergenic 45.0%
TCAGATTCTGTTAGGTCCTC+AGG + chr1_3:56359895-56359914 None:intergenic 45.0%
! GTCTCTTTCTCTTTTCCTCC+TGG - chr1_3:56359934-56359953 Msa0127160:intron 45.0%
! TTCTCTTTTCCTCCTGGTGT+AGG - chr1_3:56359940-56359959 Msa0127160:intron 45.0%
! TCTCTTTTCCTCCTGGTGTA+GGG - chr1_3:56359941-56359960 Msa0127160:intron 45.0%
TGAGTTACTTACCCTACACC+AGG + chr1_3:56359955-56359974 None:intergenic 45.0%
! CCCCGGATAGATATGCATTT+TGG - chr1_3:56360926-56360945 Msa0127160:intron 45.0%
AGCATTTAAGCAACACTCGC+GGG + chr1_3:56360979-56360998 None:intergenic 45.0%
GATGACACTTCACGTAAACC+CGG - chr1_3:56361349-56361368 Msa0127160:CDS 45.0%
CCGCATCTCCAAGAAACAAA+TGG - chr1_3:56361384-56361403 Msa0127160:CDS 45.0%
! GGATGTTAGTATTTTGCCGG+TGG + chr1_3:56362880-56362899 None:intergenic 45.0%
TCAACTACGCCATCCAATAC+AGG + chr1_3:56363666-56363685 None:intergenic 45.0%
TTGGATGGCGTAGTTGAGTT+TGG - chr1_3:56363669-56363688 Msa0127160:intron 45.0%
CGTAGTTGAGTTTGGCACAA+CGG - chr1_3:56363677-56363696 Msa0127160:intron 45.0%
TGAGTTTGGCACAACGGATA+AGG - chr1_3:56363683-56363702 Msa0127160:intron 45.0%
! CGTGTAGTAATTTGGTGGGT+TGG - chr1_3:56363834-56363853 Msa0127160:intron 45.0%
! GGTTGAGGAAGTTGGATTAG+AGG + chr1_3:56364174-56364193 None:intergenic 45.0%
ATGTGATCGGTTGAGGAAGT+TGG + chr1_3:56364182-56364201 None:intergenic 45.0%
TCCTACCATCATGTACACCA+TGG - chr1_3:56364202-56364221 Msa0127160:intron 45.0%
GATTGGGATTTGTAGAGGGT+GGG + chr1_3:56364232-56364251 None:intergenic 45.0%
TGATTGGGATTTGTAGAGGG+TGG + chr1_3:56364233-56364252 None:intergenic 45.0%
GAATCTGAAGACGAAACAGG+AGG - chr1_3:56364314-56364333 Msa0127160:intron 45.0%
AGTAATCAAGGAAACCCGTC+AGG - chr1_3:56364479-56364498 Msa0127160:intron 45.0%
GTTCCAATTGAAGAACCCGT+GGG - chr1_3:56364542-56364561 Msa0127160:intron 45.0%
TTACCCACGGGTTCTTCAAT+TGG + chr1_3:56364548-56364567 None:intergenic 45.0%
ACTTGTAGCGAATTACCCAC+GGG + chr1_3:56364560-56364579 None:intergenic 45.0%
! TAAGATTAGGCACGGTTTGG+GGG - chr1_3:56364804-56364823 Msa0127160:intron 45.0%
AGATCTCTGCTGGAGAAAAC+AGG + chr1_3:56364858-56364877 None:intergenic 45.0%
CGCAAAAATGGGGTAGACAA+TGG + chr1_3:56364947-56364966 None:intergenic 45.0%
GGCTCCACTTCTATGCAAAA+TGG - chr1_3:56364967-56364986 Msa0127160:intron 45.0%
ATATATTGCATGGGGGAGCA+TGG + chr1_3:56365063-56365082 None:intergenic 45.0%
AGTGGCATGCATGTTTGCAT+TGG - chr1_3:56365667-56365686 Msa0127160:CDS 45.0%
!! CCAGTTGGTGAAAGAGGATT+GGG + chr1_3:56366055-56366074 None:intergenic 45.0%
!! TCCAGTTGGTGAAAGAGGAT+TGG + chr1_3:56366056-56366075 None:intergenic 45.0%
! GGATGTATTTGAGGAGGCAT+TGG + chr1_3:56366134-56366153 None:intergenic 45.0%
!!! GGTTTTTGGTGTGGAGGTAT+GGG + chr1_3:56366167-56366186 None:intergenic 45.0%
!!! TGGTTTTTGGTGTGGAGGTA+TGG + chr1_3:56366168-56366187 None:intergenic 45.0%
! GGAGGTTTCGTCATGGTTTT+TGG + chr1_3:56366181-56366200 None:intergenic 45.0%
GAAGAGAGAAACTCAACGAG+AGG - chr1_3:56366304-56366323 Msa0127160:intron 45.0%
GGTTCCATTCGTGACGAAAA+TGG - chr1_3:56366347-56366366 Msa0127160:intron 45.0%
!! AAGTGGTGTAACGGTTTTGG+TGG - chr1_3:56366479-56366498 Msa0127160:intron 45.0%
!! AGTGGTGTAACGGTTTTGGT+GGG - chr1_3:56366480-56366499 Msa0127160:intron 45.0%
GGGTCCAACAGAGAAGAAAA+AGG - chr1_3:56366500-56366519 Msa0127160:intron 45.0%
! TGGTAATGTTGAGGGAGTTG+AGG - chr1_3:56366667-56366686 Msa0127160:intron 45.0%
!! GTGTTTTTGTTGCGGAGTTG+AGG - chr1_3:56366727-56366746 Msa0127160:CDS 45.0%
AGGGCTAAGGTGAAGGAAAA+TGG - chr1_3:56366747-56366766 Msa0127160:CDS 45.0%
GCTAAGGTGAAGGAAAATGG+TGG - chr1_3:56366750-56366769 Msa0127160:CDS 45.0%
!! TATATATATATATATATATG+TGG - chr1_3:56364905-56364924 Msa0127160:intron 5.0%
AGCTTACTGCCTAGTGGAGA+TGG + chr1_3:56358740-56358759 None:intergenic 50.0%
CTGCAGTGCAATCTGTTCAG+TGG - chr1_3:56358777-56358796 Msa0127160:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_3:56358859-56358878 None:intergenic 50.0%
AGGATTCTGGTATGGGGTGA+TGG - chr1_3:56359706-56359725 Msa0127160:intron 50.0%
ACCAATGGAGGTTAGTGCAG+AGG - chr1_3:56359768-56359787 Msa0127160:intron 50.0%
TCCTCTGCACTAACCTCCAT+TGG + chr1_3:56359772-56359791 None:intergenic 50.0%
! TCAGGTGACAAGGAAGCACA+TGG + chr1_3:56359877-56359896 None:intergenic 50.0%
ATGTGCTTCCTTGTCACCTG+AGG - chr1_3:56359876-56359895 Msa0127160:intron 50.0%
TGTTAGGTCCTCAGGTGACA+AGG + chr1_3:56359887-56359906 None:intergenic 50.0%
GTTACTTACCCTACACCAGG+AGG + chr1_3:56359952-56359971 None:intergenic 50.0%
CATTTAAGCAACACTCGCGG+GGG + chr1_3:56360977-56360996 None:intergenic 50.0%
GCATTTAAGCAACACTCGCG+GGG + chr1_3:56360978-56360997 None:intergenic 50.0%
TGGAGATGCGGCAATGATGT+GGG + chr1_3:56361375-56361394 None:intergenic 50.0%
TTGGAGATGCGGCAATGATG+TGG + chr1_3:56361376-56361395 None:intergenic 50.0%
AAGAGGACGGCAGCTATAGA+GGG - chr1_3:56361824-56361843 Msa0127160:intron 50.0%
CTCTTTGTGTATGCCCTTCC+TGG + chr1_3:56363237-56363256 None:intergenic 50.0%
GAGACAGCATGTATGGCTCA+CGG - chr1_3:56363254-56363273 Msa0127160:intron 50.0%
AGACAGCATGTATGGCTCAC+GGG - chr1_3:56363255-56363274 Msa0127160:intron 50.0%
! GCTTTGGCGGTAAAGAGTGT+TGG + chr1_3:56364130-56364149 None:intergenic 50.0%
!! TGTTCTGAGAGTGCTGGCTT+TGG + chr1_3:56364146-56364165 None:intergenic 50.0%
!! GTTGAGTGTTCTGAGAGTGC+TGG + chr1_3:56364152-56364171 None:intergenic 50.0%
GGTAGGAATGTGATCGGTTG+AGG + chr1_3:56364189-56364208 None:intergenic 50.0%
GCCATGGTGTACATGATGGT+AGG + chr1_3:56364206-56364225 None:intergenic 50.0%
GTCTGCCATGGTGTACATGA+TGG + chr1_3:56364210-56364229 None:intergenic 50.0%
AGACGACATGGATGAAGACG+AGG - chr1_3:56364253-56364272 Msa0127160:intron 50.0%
CTGTCATTGAGGTTGCACGT+CGG + chr1_3:56364346-56364365 None:intergenic 50.0%
ATGCCCGATGATATTCGGGT+TGG - chr1_3:56364401-56364420 Msa0127160:intron 50.0%
! TGCCCGATGATATTCGGGTT+GGG - chr1_3:56364402-56364421 Msa0127160:intron 50.0%
GACCCAACCCGAATATCATC+GGG + chr1_3:56364407-56364426 None:intergenic 50.0%
CGACCCAACCCGAATATCAT+CGG + chr1_3:56364408-56364427 None:intergenic 50.0%
GGTTCCAATTGAAGAACCCG+TGG - chr1_3:56364541-56364560 Msa0127160:intron 50.0%
! AAGATTAGGCACGGTTTGGG+GGG - chr1_3:56364805-56364824 Msa0127160:intron 50.0%
AAGTGGAGCCCGCAAAAATG+GGG + chr1_3:56364957-56364976 None:intergenic 50.0%
GAAGTGGAGCCCGCAAAAAT+GGG + chr1_3:56364958-56364977 None:intergenic 50.0%
AGAAGTGGAGCCCGCAAAAA+TGG + chr1_3:56364959-56364978 None:intergenic 50.0%
! GTTGGTGAAAGAGGATTGGG+AGG + chr1_3:56366052-56366071 None:intergenic 50.0%
CCCAATCCTCTTTCACCAAC+TGG - chr1_3:56366052-56366071 Msa0127160:intron 50.0%
!! GTTGGTCCAGTTGGTGAAAG+AGG + chr1_3:56366061-56366080 None:intergenic 50.0%
!! GTATTTGAGGAGGCATTGGG+AGG + chr1_3:56366130-56366149 None:intergenic 50.0%
!!! CGTCATGGTTTTTGGTGTGG+AGG + chr1_3:56366173-56366192 None:intergenic 50.0%
TTTGAGGGGAGGTTTCGTCA+TGG + chr1_3:56366188-56366207 None:intergenic 50.0%
TCCTGCATCATGGGTTTGAG+GGG + chr1_3:56366202-56366221 None:intergenic 50.0%
CTCCTGCATCATGGGTTTGA+GGG + chr1_3:56366203-56366222 None:intergenic 50.0%
GAGAGCGAAAGCAGTTGAGA+CGG - chr1_3:56366551-56366570 Msa0127160:intron 50.0%
GTTGAGGGAGTTGAGGATTG+AGG - chr1_3:56366674-56366693 Msa0127160:intron 50.0%
GTGGGCAAAGTTGCCAGAAG+AGG + chr1_3:56358811-56358830 None:intergenic 55.0%
GAAGCACATGGACGACGAGT+TGG + chr1_3:56359865-56359884 None:intergenic 55.0%
AGGCATGCAGACTGTTGCAG+AGG - chr1_3:56360951-56360970 Msa0127160:intron 55.0%
GAAGAGGACGGCAGCTATAG+AGG - chr1_3:56361823-56361842 Msa0127160:intron 55.0%
ATGGCTCACGGGTGCAAATG+AGG - chr1_3:56363266-56363285 Msa0127160:intron 55.0%
!! TCTGAGAGTGCTGGCTTTGG+CGG + chr1_3:56364143-56364162 None:intergenic 55.0%
TACGAGTCCACGTGTCCTGA+CGG + chr1_3:56364497-56364516 None:intergenic 55.0%
! AGATTAGGCACGGTTTGGGG+GGG - chr1_3:56364806-56364825 Msa0127160:intron 55.0%
!! GAGGTGGTGGAGGTTGTTTC+CGG + chr1_3:56366111-56366130 None:intergenic 55.0%
!! TTTGAGGAGGCATTGGGAGG+TGG + chr1_3:56366127-56366146 None:intergenic 55.0%
! GGAGGTATGGGACTGTGAAG+AGG + chr1_3:56366155-56366174 None:intergenic 55.0%
TGCATCATGGGTTTGAGGGG+AGG + chr1_3:56366199-56366218 None:intergenic 55.0%
TCCCCTCAAACCCATGATGC+AGG - chr1_3:56366198-56366217 Msa0127160:intron 55.0%
CCTCCTGCATCATGGGTTTG+AGG + chr1_3:56366204-56366223 None:intergenic 55.0%
CCTCAAACCCATGATGCAGG+AGG - chr1_3:56366201-56366220 Msa0127160:intron 55.0%
TGTTCCCTTGCCGCGTAACT+TGG + chr1_3:56366238-56366257 None:intergenic 55.0%
CTCAACTGCTTTCGCTCTCG+TGG + chr1_3:56366550-56366569 None:intergenic 55.0%
AGCGAAAGCAGTTGAGACGG+AGG - chr1_3:56366554-56366573 Msa0127160:intron 55.0%
! TGAGACGGAGGTTGCTGCTT+CGG - chr1_3:56366566-56366585 Msa0127160:intron 55.0%
TGTTGCGGAGTTGAGGGCTA+AGG - chr1_3:56366734-56366753 Msa0127160:CDS 55.0%
GGAGTTGAGGGCTAAGGTGA+AGG - chr1_3:56366740-56366759 Msa0127160:CDS 55.0%
GCTCCTGCTCCATCTCCACT+AGG - chr1_3:56358728-56358747 Msa0127160:CDS 60.0%
CTGCCTAGTGGAGATGGAGC+AGG + chr1_3:56358734-56358753 None:intergenic 60.0%
! GCACATGGACGACGAGTTGG+TGG + chr1_3:56359862-56359881 None:intergenic 60.0%
ATGCGGCAATGATGTGGGCC+GGG + chr1_3:56361370-56361389 None:intergenic 60.0%
GATGCGGCAATGATGTGGGC+CGG + chr1_3:56361371-56361390 None:intergenic 60.0%
GCTCACGGGTGCAAATGAGG+TGG - chr1_3:56363269-56363288 Msa0127160:intron 60.0%
TGTAGAGGGTGGGTCTGCCA+TGG + chr1_3:56364222-56364241 None:intergenic 60.0%
AGGAAACCCGTCAGGACACG+TGG - chr1_3:56364487-56364506 Msa0127160:intron 60.0%
ACGAGTCCACGTGTCCTGAC+GGG + chr1_3:56364496-56364515 None:intergenic 60.0%
! GATTAGGCACGGTTTGGGGG+GGG - chr1_3:56364807-56364826 Msa0127160:intron 60.0%
! ATTAGGCACGGTTTGGGGGG+GGG - chr1_3:56364808-56364827 Msa0127160:intron 60.0%
!! GTGGTGGTGGTTGGTCCAGT+TGG + chr1_3:56366070-56366089 None:intergenic 60.0%
! GTGGAGGTTGTTTCCGGTGG+TGG + chr1_3:56366105-56366124 None:intergenic 60.0%
! GTGGTGGAGGTTGTTTCCGG+TGG + chr1_3:56366108-56366127 None:intergenic 60.0%
GGGGTCACCTCCTGCATCAT+GGG + chr1_3:56366211-56366230 None:intergenic 60.0%
AGGGGTCACCTCCTGCATCA+TGG + chr1_3:56366212-56366231 None:intergenic 60.0%
TTGCCGCGTAACTTGGCGGA+GGG + chr1_3:56366231-56366250 None:intergenic 60.0%
TCCGCCAAGTTACGCGGCAA+GGG - chr1_3:56366231-56366250 Msa0127160:intron 60.0%
TCCCTTGCCGCGTAACTTGG+CGG + chr1_3:56366235-56366254 None:intergenic 60.0%
TTGGCGCTCAGCTCGTCTTG+CGG + chr1_3:56366261-56366280 None:intergenic 60.0%
! GGAGGTTGCTGCTTCGGTTC+AGG - chr1_3:56366572-56366591 Msa0127160:intron 60.0%
! CGGGTTGGGTCGCCAAACGA+CGG - chr1_3:56364416-56364435 Msa0127160:intron 65.0%
GGGTTGGGTCGCCAAACGAC+GGG - chr1_3:56364417-56364436 Msa0127160:intron 65.0%
!! CGCGTGGAAGTGGTGGTGGT+TGG + chr1_3:56366079-56366098 None:intergenic 65.0%
!! GAGGCATTGGGAGGTGGTGG+AGG + chr1_3:56366121-56366140 None:intergenic 65.0%
!! GAGGAGGCATTGGGAGGTGG+TGG + chr1_3:56366124-56366143 None:intergenic 65.0%
GACCCCTCCGCCAAGTTACG+CGG - chr1_3:56366225-56366244 Msa0127160:intron 65.0%
TGCCGCGTAACTTGGCGGAG+GGG + chr1_3:56366230-56366249 None:intergenic 65.0%
CTTGCCGCGTAACTTGGCGG+AGG + chr1_3:56366232-56366251 None:intergenic 65.0%
CTCCGCCAAGTTACGCGGCA+AGG - chr1_3:56366230-56366249 Msa0127160:intron 65.0%
GAGCGCCAACCATGTCCTCG+CGG - chr1_3:56366272-56366291 Msa0127160:intron 65.0%
TCGCTCCGCGAGGACATGGT+TGG + chr1_3:56366280-56366299 None:intergenic 65.0%
TTCGTCGCTCCGCGAGGACA+TGG + chr1_3:56366284-56366303 None:intergenic 65.0%
CTCTTCTTCGTCGCTCCGCG+AGG + chr1_3:56366290-56366309 None:intergenic 65.0%
GCAGCGCGTGGAAGTGGTGG+TGG + chr1_3:56366083-56366102 None:intergenic 70.0%
GTGGCAGCGCGTGGAAGTGG+TGG + chr1_3:56366086-56366105 None:intergenic 70.0%
GTGGTGGCAGCGCGTGGAAG+TGG + chr1_3:56366089-56366108 None:intergenic 70.0%
CTTCCACGCGCTGCCACCAC+CGG - chr1_3:56366089-56366108 Msa0127160:intron 70.0%
! TTTCCGGTGGTGGCAGCGCG+TGG + chr1_3:56366095-56366114 None:intergenic 70.0%
!! GGCACGGTTTGGGGGGGGGC+TGG - chr1_3:56364812-56364831 Msa0127160:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56358722 56366842 56358722 ID=Msa0127160;Name=Msa0127160
chr1_3 mRNA 56358722 56366842 56358722 ID=Msa0127160-mRNA-1;Parent=Msa0127160;Name=Msa0127160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.4|0.16|1|1|1|6|0|656
chr1_3 exon 56366727 56366842 56366727 ID=Msa0127160-mRNA-1:exon:17744;Parent=Msa0127160-mRNA-1
chr1_3 exon 56365602 56365856 56365602 ID=Msa0127160-mRNA-1:exon:17743;Parent=Msa0127160-mRNA-1
chr1_3 exon 56362238 56362334 56362238 ID=Msa0127160-mRNA-1:exon:17742;Parent=Msa0127160-mRNA-1
chr1_3 exon 56361860 56361916 56361860 ID=Msa0127160-mRNA-1:exon:17741;Parent=Msa0127160-mRNA-1
chr1_3 exon 56360968 56361487 56360968 ID=Msa0127160-mRNA-1:exon:17740;Parent=Msa0127160-mRNA-1
chr1_3 exon 56358722 56359647 56358722 ID=Msa0127160-mRNA-1:exon:17739;Parent=Msa0127160-mRNA-1
chr1_3 CDS 56366727 56366842 56366727 ID=Msa0127160-mRNA-1:cds;Parent=Msa0127160-mRNA-1
chr1_3 CDS 56365602 56365856 56365602 ID=Msa0127160-mRNA-1:cds;Parent=Msa0127160-mRNA-1
chr1_3 CDS 56362238 56362334 56362238 ID=Msa0127160-mRNA-1:cds;Parent=Msa0127160-mRNA-1
chr1_3 CDS 56361860 56361916 56361860 ID=Msa0127160-mRNA-1:cds;Parent=Msa0127160-mRNA-1
chr1_3 CDS 56360968 56361487 56360968 ID=Msa0127160-mRNA-1:cds;Parent=Msa0127160-mRNA-1
chr1_3 CDS 56358722 56359647 56358722 ID=Msa0127160-mRNA-1:cds;Parent=Msa0127160-mRNA-1
Gene Sequence

>Msa0127160

ATGGCTGCTCCTGCTCCATCTCCACTAGGCAGTAAGCTTCAAAACATGTTGCAGGCTGCAGTGCAATCTGTTCAGTGGACTTATAGCCTCTTCTGGCAACTTTGCCCACAACAACTGATTCTGGTATGGGGTGATGGATATTACAATGGATCAATTAAGACTCGAAAGACAGTGCAACCAATGGAGGTTAGTGCAGAGGAAGCATCTCTACAAAGAAGCCAGCAACTAAGAGAACTCTATGAATCATTGTCTGCCGGAGAGACAAATCCACCAACTCGTCGTCCATGTGCTTCCTTGTCACCTGAGGACCTAACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCTTTCTCTTTTCCTCCTGGTGTAGGGTTGCCAGGAAGGGCATACACAAAGAGACAGCATGTATGGCTCACGGGTGCAAATGAGGTGGATAGCAAAACATTTTCAAGAGCTATTCTAGCTAAGACTGTGGTATGCATTCCTGTATTGGATGGCGTAGTTGAGTTTGGCACAACGGATAAGATTCAAGAAGACCTTAATTTCATCAAACACGTGAAGAGCTTCTTTCTCGACCAACACTCTTTACCGCCAAAGCCAGCACTCTCAGAACACTCAACCTCTAATCCAACTTCCTCAACCGATCACATTCCTACCATCATGTACACCATGGCAGACCCACCCTCTACAAATCCCAATCAAGACGACATGGATGAAGACGAGGAAGACGAAGAAGATGAAGAAGACGATGAAGTCGAATCAGAATCTGAAGACGAAACAGGAGGTCGTTACCGACGTGCAACCTCAATGACAGCTATTGTAGAGCCAAGTGAGTTGATGCAGATTGAAATGCCCGATGATATTCGGGTTGGGTCGCCAAACGACGGGTCAAATAATTTAGACTCGGATTTTCATTTACTAGTTGTGAGTAATCAAGGAAACCCGTCAGGACACGTGGACTCGTACAAAACCGATTCAACACAAAGATGGGTTCCAATTGAAGAACCCGTGGGTAATTCGCTACAAGTTCAACTACCATCTTCAGTACTTCATCATCAACTAGAAGACTTAACACAAGAAGACACACATTACTCTCAAACAGTATCAACCATCATTCAAAACCAGTCAACACAATGGAACATTGATTTTTCACCTTCCATCAACTACATCACTTACTCCTCCCAATCCTCTTTCACCAACTGGACCAACCACCACCACTTCCACGCGCTGCCACCACCGGAAACAACCTCCACCACCTCCCAATGCCTCCTCAAATACATCCTCTTCACAGTCCCATACCTCCACACCAAAAACCATGACGAAACCTCCCCTCAAACCCATGATGCAGGAGGTGACCCCTCCGCCAAGTTACGCGGCAAGGGAACACCGCAAGACGAGCTGAGCGCCAACCATGTCCTCGCGGAGCGACGAAGAAGAGAGAAACTCAACGAGAGGTTCATTATTTTAAGATCATTGGTTCCATTCGTGACGAAAATGGACAAAGCTTCTATATTAGGTGACACTATTGAGTACTTGAAACAGCTAAGAAGAAAGATACAAGATCTTGAAACACGTAACCGTCAGATAGAGACTGAACAACAAAGTAGAAGTGGTGTAACGGTTTTGGTGGGTCCAACAGAGAAGAAAAAGGTGAGGATTGTTGAAGAATGTGGAGCCACGAGAGCGAAAGCAGTTGAGACGGAGGTTGCTGCTTCGGTTCAGGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATTGAGTGTTTGCATAGAGAAGGATTGTTGCTTGATGTTATGGTAATGTTGAGGGAGTTGAGGATTGAGGTTATTGGAGTTCAGTCTTCGCTCAATAATGGTGTTTTTGTTGCGGAGTTGAGGGCTAAGGTGAAGGAAAATGGTGGAAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCACTTAACCAAATTATACCTCACAACATTTAG
Protein sequence

>Msa0127160

MAAPAPSPLGSKLQNMLQAAVQSVQWTYSLFWQLCPQQLILVWGDGYYNGSIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGRAYTKRQHVWLTGANEVDSKTFSRAILAKTVVCIPVLDGVVEFGTTDKIQEDLNFIKHVKSFFLDQHSLPPKPALSEHSTSNPTSSTDHIPTIMYTMADPPSTNPNQDDMDEDEEDEEDEEDDEVESESEDETGGRYRRATSMTAIVEPSELMQIEMPDDIRVGSPNDGSNNLDSDFHLLVVSNQGNPSGHVDSYKTDSTQRWVPIEEPVGNSLQVQLPSSVLHHQLEDLTQEDTHYSQTVSTIIQNQSTQWNIDFSPSINYITYSSQSSFTNWTNHHHFHALPPPETTSTTSQCLLKYILFTVPYLHTKNHDETSPQTHDAGGDPSAKLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIETEQQSRSGVTVLVGPTEKKKVRIVEECGATRAKAVETEVAASVQVSIIESDALLEIECLHREGLLLDVMVMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGGNGKKVSIVEVKRALNQIIPHNI*