AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0082530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0082530 MtrunA17_Chr1g0185621 92.991 585 34 2 1 578 59 643 0.0 1055
Msa0082530 MtrunA17_Chr8g0386921 52.482 141 62 1 1 136 55 195 6.89e-42 159
Msa0082530 MtrunA17_Chr8g0386921 32.155 283 151 8 294 555 307 569 2.34e-26 113
Msa0082530 MtrunA17_Chr3g0131691 36.313 179 105 4 396 571 289 461 2.91e-20 94.0
Msa0082530 MtrunA17_Chr2g0280161 35.032 157 92 3 410 565 177 324 2.32e-19 90.1
Msa0082530 MtrunA17_Chr8g0346151 33.880 183 93 5 397 569 271 435 8.61e-19 89.4
Msa0082530 MtrunA17_Chr8g0366751 33.544 158 102 1 410 564 462 619 3.03e-18 88.6
Msa0082530 MtrunA17_Chr8g0346161 32.948 173 104 3 397 569 283 443 5.89e-18 87.0
Msa0082530 MtrunA17_Chr8g0346161 31.915 94 55 2 46 130 88 181 2.74e-11 65.9
Msa0082530 MtrunA17_Chr2g0307141 33.333 144 84 3 410 551 183 316 6.25e-18 85.9
Msa0082530 MtrunA17_Chr2g0307131 34.028 144 83 3 410 551 179 312 9.65e-18 85.1
Msa0082530 MtrunA17_Chr5g0400621 32.468 154 95 2 398 550 144 289 1.09e-17 84.7
Msa0082530 MtrunA17_Chr7g0225901 29.448 163 99 4 391 551 73 221 2.29e-17 82.0
Msa0082530 MtrunA17_Chr4g0054581 32.886 149 91 3 410 556 198 339 2.32e-17 84.3
Msa0082530 MtrunA17_Chr5g0400641 28.931 159 100 2 413 566 1 151 4.56e-17 79.0
Msa0082530 MtrunA17_Chr4g0033291 26.459 257 160 7 305 551 48 285 4.65e-17 82.8
Msa0082530 MtrunA17_Chr5g0411341 30.675 163 110 1 410 569 493 655 4.71e-17 84.7
Msa0082530 MtrunA17_Chr5g0411341 37.398 123 62 4 12 127 108 222 8.68e-14 74.3
Msa0082530 MtrunA17_Chr5g0400671 34.532 139 80 2 411 549 155 282 1.14e-16 81.6
Msa0082530 MtrunA17_Chr4g0033391 32.639 144 82 3 410 551 147 277 1.69e-16 80.9
Msa0082530 MtrunA17_Chr7g0252041 32.000 175 107 4 407 573 283 453 2.09e-16 82.0
Msa0082530 MtrunA17_Chr4g0049331 29.310 174 113 3 376 549 103 266 4.06e-16 79.7
Msa0082530 MtrunA17_Chr6g0468491 27.136 199 113 5 369 551 88 270 1.27e-15 78.2
Msa0082530 MtrunA17_Chr4g0002801 28.025 157 102 3 398 551 143 291 2.91e-15 77.4
Msa0082530 MtrunA17_Chr5g0400661 29.139 151 90 2 410 549 149 293 3.38e-15 77.0
Msa0082530 MtrunA17_Chr1g0211081 28.061 196 110 5 399 571 311 498 7.86e-15 77.4
Msa0082530 MtrunA17_Chr4g0002781 27.389 157 100 3 398 551 165 310 2.57e-14 74.7
Msa0082530 MtrunA17_Chr7g0260841 52.308 65 31 0 410 474 355 419 2.73e-14 75.5
Msa0082530 MtrunA17_Chr7g0275821 50.704 71 34 1 410 480 252 321 3.75e-14 74.7
Msa0082530 MtrunA17_Chr4g0054551 61.111 54 21 0 410 463 155 208 1.33e-13 72.4
Msa0082530 MtrunA17_Chr2g0333621 27.879 165 101 4 392 549 117 270 1.34e-13 72.0
Msa0082530 MtrunA17_Chr6g0468461 27.461 193 110 4 367 551 122 292 1.74e-13 72.0
Msa0082530 MtrunA17_Chr4g0054571 47.541 61 32 0 410 470 150 210 2.46e-13 71.6
Msa0082530 MtrunA17_Chr5g0411331 35.659 129 71 4 12 135 91 212 2.85e-13 70.1
Msa0082530 MtrunA17_Chr4g0033281 31.944 144 82 3 410 551 153 282 5.09e-13 70.5
Msa0082530 MtrunA17_Chr4g0054621 29.577 142 85 3 410 551 172 298 5.33e-13 70.5
Msa0082530 MtrunA17_Chr4g0054561 55.556 54 24 0 410 463 155 208 7.28e-13 70.1
Msa0082530 MtrunA17_Chr4g0052821 30.723 166 84 5 398 549 283 431 1.55e-12 70.1
Msa0082530 MtrunA17_Chr0c01g0489461 28.387 155 96 4 411 550 197 351 3.60e-12 68.6
Msa0082530 MtrunA17_Chr3g0141091 32.544 169 84 6 384 549 149 290 8.28e-12 67.0
Msa0082530 MtrunA17_Chr4g0052841 30.435 161 92 5 399 549 283 433 9.18e-12 67.8
Msa0082530 MtrunA17_Chr2g0333611 29.577 142 84 4 411 549 46 174 1.10e-11 64.7
Msa0082530 MtrunA17_Chr2g0333641 26.087 161 106 3 392 549 116 266 1.25e-11 66.2
Msa0082530 MtrunA17_Chr8g0336681 26.543 162 95 4 397 549 148 294 1.90e-11 65.9
Msa0082530 MtrunA17_Chr1g0153241 51.786 56 27 0 411 466 96 151 2.48e-11 64.7
Msa0082530 MtrunA17_Chr5g0426851 25.862 174 112 6 411 571 102 271 4.53e-11 64.3
Msa0082530 MtrunA17_Chr5g0411541 32.500 160 85 3 391 549 141 278 4.98e-11 64.3
Msa0082530 MtrunA17_Chr2g0298751 49.091 55 28 0 401 455 43 97 8.02e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0082530 AT5G41315.3 31.485 613 316 18 2 570 69 621 3.85e-70 238
Msa0082530 AT5G41315.1 31.485 613 316 18 2 570 64 616 5.61e-70 238
Msa0082530 AT5G41315.2 31.485 613 316 18 2 570 72 624 5.80e-70 238
Msa0082530 AT1G63650.3 30.718 599 299 20 2 570 63 575 5.31e-68 231
Msa0082530 AT1G63650.1 30.718 599 299 20 2 570 63 575 5.31e-68 231
Msa0082530 AT1G63650.2 30.718 599 299 20 2 570 63 575 5.31e-68 231
Msa0082530 AT4G09820.1 70.861 151 38 2 2 147 69 218 3.15e-67 227
Msa0082530 AT4G09820.1 38.225 293 111 8 291 578 271 498 3.18e-46 170
Msa0082530 AT4G00480.3 38.028 142 69 3 10 132 78 219 3.04e-24 107
Msa0082530 AT4G00480.3 28.082 292 167 11 292 569 241 503 5.27e-17 84.7
Msa0082530 AT4G00480.1 38.028 142 69 3 10 132 78 219 4.49e-24 106
Msa0082530 AT4G00480.1 27.645 293 169 11 292 570 241 504 1.60e-16 83.2
Msa0082530 AT4G00480.2 38.028 142 69 3 10 132 78 219 9.66e-24 105
Msa0082530 AT4G00480.2 27.645 293 169 11 292 570 241 504 3.31e-16 82.4
Msa0082530 AT1G12860.2 37.195 164 99 2 407 569 264 424 3.06e-22 100
Msa0082530 AT1G12860.1 36.810 163 99 2 407 568 264 423 2.02e-21 97.8
Msa0082530 AT4G17880.1 35.000 160 96 2 410 569 416 567 1.84e-19 92.8
Msa0082530 AT4G17880.1 34.043 94 57 1 42 130 157 250 2.34e-14 76.6
Msa0082530 AT3G26744.6 36.145 166 102 3 407 569 304 468 1.10e-18 89.7
Msa0082530 AT5G46760.1 33.750 160 102 2 410 569 415 570 1.83e-18 89.4
Msa0082530 AT5G46760.1 31.200 125 65 3 12 126 118 231 6.65e-12 68.9
Msa0082530 AT3G26744.1 35.294 170 106 3 407 573 304 472 3.05e-18 88.2
Msa0082530 AT3G26744.4 35.294 170 106 3 407 573 304 472 3.05e-18 88.2
Msa0082530 AT3G26744.2 35.294 170 106 3 407 573 304 472 3.05e-18 88.2
Msa0082530 AT1G32640.1 33.951 162 96 3 410 569 452 604 9.53e-18 87.4
Msa0082530 AT1G32640.1 32.258 124 73 2 12 130 135 252 1.66e-14 77.0
Msa0082530 AT4G37850.2 33.133 166 91 5 398 559 145 294 6.76e-17 82.4
Msa0082530 AT4G37850.1 33.133 166 91 5 398 559 145 294 6.76e-17 82.4
Msa0082530 AT2G46510.1 62.963 54 20 0 410 463 395 448 9.18e-15 77.8
Msa0082530 AT2G46510.1 34.286 105 64 1 38 137 142 246 1.52e-12 70.9
Msa0082530 AT2G22760.2 33.533 167 89 5 396 548 96 254 1.12e-14 75.1
Msa0082530 AT2G22760.1 33.533 167 89 5 396 548 96 254 2.26e-14 74.3
Msa0082530 AT1G01260.1 44.578 83 45 1 388 469 410 492 8.19e-14 74.7
Msa0082530 AT1G01260.1 37.168 113 63 3 36 143 138 247 7.64e-11 65.5
Msa0082530 AT1G01260.2 44.578 83 45 1 388 469 410 492 8.19e-14 74.7
Msa0082530 AT1G01260.2 37.168 113 63 3 36 143 138 247 7.64e-11 65.5
Msa0082530 AT1G01260.3 44.578 83 45 1 388 469 410 492 8.19e-14 74.7
Msa0082530 AT1G01260.3 37.168 113 63 3 36 143 138 247 7.64e-11 65.5
Msa0082530 AT4G16430.1 41.748 103 56 3 373 475 286 384 1.87e-13 73.2
Msa0082530 AT4G00870.1 52.459 61 29 0 410 470 249 309 4.10e-13 72.0
Msa0082530 AT2G16910.1 43.902 82 40 1 388 463 286 367 4.47e-13 72.4
Msa0082530 AT4G38070.1 30.405 148 86 4 379 509 54 201 6.45e-13 69.7
Msa0082530 AT2G22770.1 29.299 157 104 2 401 550 123 279 6.92e-13 70.5
Msa0082530 AT5G46830.1 33.742 163 92 6 410 569 343 492 2.02e-12 70.1
Msa0082530 AT5G57150.3 35.714 98 58 1 408 500 53 150 4.96e-12 66.2
Msa0082530 AT5G57150.5 35.714 98 58 1 408 500 52 149 5.57e-12 66.2
Msa0082530 AT5G57150.2 35.714 98 58 1 408 500 53 150 5.93e-12 66.2
Msa0082530 AT5G57150.1 35.714 98 58 1 408 500 52 149 6.39e-12 66.2
Msa0082530 AT2G22750.4 38.384 99 48 3 374 459 105 203 6.63e-12 67.4
Msa0082530 AT2G22750.3 38.384 99 48 3 374 459 105 203 6.80e-12 67.4
Msa0082530 AT2G22750.5 38.384 99 48 3 374 459 101 199 6.96e-12 67.4
Msa0082530 AT2G22750.2 38.384 99 48 3 374 459 77 175 7.44e-12 67.0
Msa0082530 AT2G22750.1 38.384 99 48 3 374 459 77 175 7.57e-12 67.0
Msa0082530 AT4G29930.4 32.609 138 76 5 401 530 45 173 1.17e-11 64.3
Msa0082530 AT4G29930.6 29.333 150 93 3 401 550 45 181 1.20e-11 65.1
Msa0082530 AT4G29930.2 29.333 150 90 3 401 550 45 178 1.24e-11 65.1
Msa0082530 AT4G29930.1 41.176 85 44 2 401 485 45 123 2.13e-11 65.1
Msa0082530 AT5G57150.4 32.031 128 66 3 378 500 39 150 2.26e-11 65.1
Msa0082530 AT4G29930.5 40.845 71 42 0 401 471 45 115 2.29e-11 64.7
Msa0082530 AT4G29930.3 40.845 71 42 0 401 471 45 115 3.65e-11 64.3
Msa0082530 AT4G29930.7 40.845 71 42 0 401 471 45 115 3.65e-11 64.3
Msa0082530 AT3G61950.6 29.730 148 84 4 410 550 128 262 5.21e-11 64.3
Msa0082530 AT3G61950.3 29.730 148 84 4 410 550 179 313 6.95e-11 64.7
Msa0082530 AT3G61950.2 29.730 148 84 4 410 550 128 262 7.83e-11 63.9
Msa0082530 AT1G72210.1 26.190 168 115 3 411 571 127 292 8.38e-11 63.9

Find 165 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTGTGTATGCCCTTCC+TGG 0.213816 1_2:+61373408 None:intergenic
TCACGTGTTTGATGAAATTA+AGG 0.245342 1_2:+61372544 None:intergenic
GAGGTGGTGGAGGTTGTTTC+CGG 0.247905 1_2:+61370529 None:intergenic
ATGGACAAAGCTTCTATATT+AGG 0.273239 1_2:-61370271 Msa0082530:CDS
GGTTCCATTCGTGACGAAAA+TGG 0.283595 1_2:-61370290 Msa0082530:CDS
TTCATCCATGTCGTCTTGAT+TGG 0.294810 1_2:+61372386 None:intergenic
TTGAAATGCCCGATGATATT+CGG 0.302845 1_2:-61372236 Msa0082530:CDS
CATAGAGTTCTCTTAGTTGC+TGG 0.317996 1_2:+61376838 None:intergenic
GAGTTGAGGATTGAGGTTAT+TGG 0.318064 1_2:-61369956 Msa0082530:CDS
GGTTGAGGAAGTTGGGTTAG+AGG 0.318388 1_2:+61372461 None:intergenic
TAGAAGTGGTGTAACGGTTT+TGG 0.322614 1_2:-61370161 Msa0082530:CDS
AGGATTGTTGCTTGATGTTA+TGG 0.331605 1_2:-61369990 Msa0082530:CDS
GTGAAGGAAAATGGTGGAAA+TGG 0.337697 1_2:-61369881 Msa0082530:CDS
GTGGAGGTTGTTTCCGGTGG+TGG 0.345072 1_2:+61370535 None:intergenic
GGAGGTTGCTGCTTCGGTTC+AGG 0.361607 1_2:-61370065 Msa0082530:CDS
CAATGTTCCATTGTGTTGAT+TGG 0.366315 1_2:+61370644 None:intergenic
GAGGCATTGGGAGGTGGTGG+AGG 0.370793 1_2:+61370519 None:intergenic
CCCAATCCTCTTTCACCAAC+TGG 0.373009 1_2:-61370585 Msa0082530:CDS
TGAAATGCCCGATGATATTC+GGG 0.373074 1_2:-61372235 Msa0082530:CDS
AAATTATTTGACCCGTCGTT+TGG 0.375273 1_2:+61372204 None:intergenic
ATGTGATCGGTTGAGGAAGT+TGG 0.376648 1_2:+61372453 None:intergenic
CCTCCTGCATCATGGGTTTG+AGG 0.379106 1_2:+61370436 None:intergenic
TGAGACGGAGGTTGCTGCTT+CGG 0.382360 1_2:-61370071 Msa0082530:CDS
TTTGAGGAGGCATTGGGAGG+TGG 0.387314 1_2:+61370513 None:intergenic
AGAACCATTCAGATTCTGTT+AGG 0.392300 1_2:+61376748 None:intergenic
TGTTCCCTTGCCGCGTAACT+TGG 0.394010 1_2:+61370402 None:intergenic
TTACCCACAGGTTCTTCAAT+TGG 0.394970 1_2:+61372087 None:intergenic
AGGGCTAAGGTGAAGGAAAA+TGG 0.395483 1_2:-61369890 Msa0082530:CDS
TCATCCATGTCGTCTTGATT+GGG 0.400362 1_2:+61372387 None:intergenic
GGAGTAAGTGATGTAGTTGA+TGG 0.405895 1_2:+61370609 None:intergenic
TTACTAGTTGTGAGTAATCA+AGG 0.407904 1_2:-61372165 Msa0082530:CDS
CTCCTGCATCATGGGTTTGA+GGG 0.412275 1_2:+61370437 None:intergenic
CAAGTTCAACTACCATCTTC+AGG 0.412992 1_2:-61372057 Msa0082530:intron
TCAGATTCTGTTAGGTCCTC+AGG 0.415594 1_2:+61376756 None:intergenic
GTGGTGGCAGCGCGTGGAAG+TGG 0.418946 1_2:+61370551 None:intergenic
TGTGATCGGTTGAGGAAGTT+GGG 0.421244 1_2:+61372454 None:intergenic
GGATGTATTTGAGGAGGCAT+TGG 0.421906 1_2:+61370506 None:intergenic
GTTGAGGGAGTTGAGGATTG+AGG 0.424843 1_2:-61369963 Msa0082530:CDS
TTGGATGGCGTCGTTGAGTT+TGG 0.426026 1_2:-61372964 Msa0082530:CDS
GTTCAGTCTTCGCTCAATAA+TGG 0.426434 1_2:-61369932 Msa0082530:CDS
TATTGAGAGTGATGCTTTGT+TGG 0.427384 1_2:-61370035 Msa0082530:CDS
AACCCATCTTTGTGTTGAAT+CGG 0.430063 1_2:+61372110 None:intergenic
TGTTCTGAAAGTGCTGGCTT+TGG 0.430911 1_2:+61372489 None:intergenic
TGAGTTTGGCACAACGGATA+AGG 0.432226 1_2:-61372950 Msa0082530:intron
AGGGGTCACCTCCTGCATCA+TGG 0.433115 1_2:+61370428 None:intergenic
TCCTCTGCACTAACCTCCAT+TGG 0.444642 1_2:+61376879 None:intergenic
TCAATCTGCATCAGCTCACT+TGG 0.446831 1_2:+61372255 None:intergenic
GAGGAGGCATTGGGAGGTGG+TGG 0.453489 1_2:+61370516 None:intergenic
ACTATTAATTTACCTGAAGA+TGG 0.457762 1_2:+61372045 None:intergenic
CCAGTTGGTGAAAGAGGATT+GGG 0.458813 1_2:+61370585 None:intergenic
GCAGCGCGTGGAAGTGGTGG+TGG 0.460378 1_2:+61370557 None:intergenic
TCAGAATCTGAAGACGAAAC+AGG 0.465408 1_2:-61372321 Msa0082530:CDS
TGGTAATGTTGAGGGAGTTG+AGG 0.465496 1_2:-61369970 Msa0082530:CDS
GGGTCCAACAGAGAAGAAAA+AGG 0.466081 1_2:-61370137 Msa0082530:CDS
TCCAGTTGGTGAAAGAGGAT+TGG 0.466348 1_2:+61370584 None:intergenic
CTGTGAAGAGGATGTATTTG+AGG 0.466470 1_2:+61370497 None:intergenic
GTGGTGGTGGTTGGTCCAGT+TGG 0.466928 1_2:+61370570 None:intergenic
GATTGGGATTTGTAGAGGGT+GGG 0.467067 1_2:+61372403 None:intergenic
TCCCTTGCCGCGTAACTTGG+CGG 0.467265 1_2:+61370405 None:intergenic
TGAAGGAAAATGGTGGAAAT+GGG 0.468007 1_2:-61369880 Msa0082530:CDS
GTTGGTCCAGTTGGTGAAAG+AGG 0.468465 1_2:+61370579 None:intergenic
TTCAAGAGCTATTCTAGCTA+AGG 0.470826 1_2:-61373337 Msa0082530:intron
ATTGAGTGTTTGCATAGAGA+AGG 0.471413 1_2:-61370010 Msa0082530:CDS
GATGTATTTGAGGAGGCATT+GGG 0.472065 1_2:+61370507 None:intergenic
TGTGGTATGCATTCCTGTAT+TGG 0.472277 1_2:-61372983 Msa0082530:CDS
TGCATCATGGGTTTGAGGGG+AGG 0.472863 1_2:+61370441 None:intergenic
ACACAAAGAGACAGCATGTA+TGG 0.473379 1_2:-61373395 Msa0082530:CDS
CTCCGCCAAGTTACGCGGCA+AGG 0.483118 1_2:-61370407 Msa0082530:CDS
TGATTGGGATTTGTAGAGGG+TGG 0.486223 1_2:+61372402 None:intergenic
AAACCGATTCAACACAAAGA+TGG 0.487993 1_2:-61372113 Msa0082530:CDS
TTGCCGCGTAACTTGGCGGA+GGG 0.490478 1_2:+61370409 None:intergenic
TCTGAAAGTGCTGGCTTTGG+CGG 0.493095 1_2:+61372492 None:intergenic
TTCGTCGCTCCGCGAGGACA+TGG 0.493393 1_2:+61370356 None:intergenic
GGGGTCACCTCCTGCATCAT+GGG 0.493705 1_2:+61370429 None:intergenic
TGCCCGATGATATTCGGGTT+GGG 0.493884 1_2:-61372230 Msa0082530:CDS
GTGGCAGCGCGTGGAAGTGG+TGG 0.496583 1_2:+61370554 None:intergenic
CTTCCACGCGCTGCCACCAC+CGG 0.497913 1_2:-61370548 Msa0082530:CDS
TATATATAAGGTTGCCAGGA+AGG 0.500355 1_2:-61373422 Msa0082530:intron
TCCCCTCAAACCCATGATGC+AGG 0.500911 1_2:-61370439 Msa0082530:CDS
CTCTATGAATCATTGTCTGC+CGG 0.501432 1_2:-61376822 Msa0082530:CDS
TTTCCGGTGGTGGCAGCGCG+TGG 0.505786 1_2:+61370545 None:intergenic
GCACTATATATAAGGTTGCC+AGG 0.507294 1_2:-61373426 Msa0082530:intron
TCAACGACGCCATCCAATAC+AGG 0.508599 1_2:+61372970 None:intergenic
GGTAGGAATGTGATCGGTTG+AGG 0.510024 1_2:+61372446 None:intergenic
CTCAACTGCTTTCGCTCTCG+TGG 0.513238 1_2:+61370090 None:intergenic
TCCTGCATCATGGGTTTGAG+GGG 0.521239 1_2:+61370438 None:intergenic
TGTTGCGGAGTTGAGGGCTA+AGG 0.522771 1_2:-61369903 Msa0082530:CDS
GTTGTTCAGTCTCTATCTGA+CGG 0.523038 1_2:+61370188 None:intergenic
CGCGTGGAAGTGGTGGTGGT+TGG 0.524425 1_2:+61370561 None:intergenic
CTCTACAATAGCTGCCATTG+AGG 0.529319 1_2:+61372278 None:intergenic
TGATGTTATGGTAATGTTGA+GGG 0.530343 1_2:-61369978 Msa0082530:CDS
AGTTGGTGGATTTGTCTCTC+CGG 0.531556 1_2:+61376803 None:intergenic
CTTGCCGCGTAACTTGGCGG+AGG 0.532091 1_2:+61370408 None:intergenic
GTGGTGGAGGTTGTTTCCGG+TGG 0.532605 1_2:+61370532 None:intergenic
TACGAGTCCACGTGTCCTGA+CGG 0.533941 1_2:+61372138 None:intergenic
GACCCAACCCGAATATCATC+GGG 0.540240 1_2:+61372228 None:intergenic
TCCGCCAAGTTACGCGGCAA+GGG 0.540559 1_2:-61370406 Msa0082530:CDS
GCACATGGACGACGAGTTGG+TGG 0.545968 1_2:+61376789 None:intergenic
GTTGAGTGTTCTGAAAGTGC+TGG 0.548282 1_2:+61372483 None:intergenic
AGTAATCAAGGAAACCCGTC+AGG 0.550819 1_2:-61372153 Msa0082530:CDS
AACCGATTCAACACAAAGAT+GGG 0.550895 1_2:-61372112 Msa0082530:CDS
GCTTTGGCGGCAAAGAGTGA+TGG 0.555266 1_2:+61372505 None:intergenic
TCTTGATTGGGATTTGTAGA+GGG 0.555864 1_2:+61372399 None:intergenic
GAGAGCGAAAGCAGTTGAGA+CGG 0.556085 1_2:-61370086 Msa0082530:CDS
ATGCCCGATGATATTCGGGT+TGG 0.557418 1_2:-61372231 Msa0082530:CDS
AGACCCAACCCGAATATCAT+CGG 0.558175 1_2:+61372227 None:intergenic
ACGAGTCCACGTGTCCTGAC+GGG 0.558448 1_2:+61372139 None:intergenic
AGCGAAAGCAGTTGAGACGG+AGG 0.558576 1_2:-61370083 Msa0082530:CDS
AGGACCTAACAGAATCTGAA+TGG 0.560680 1_2:-61376752 Msa0082530:CDS
ACTGAACAACAAAGTAGAAG+TGG 0.562802 1_2:-61370175 Msa0082530:CDS
GAAGCACATGGACGACGAGT+TGG 0.564910 1_2:+61376786 None:intergenic
AGACAGCATGTATGGCTCAC+GGG 0.565294 1_2:-61373387 Msa0082530:CDS
ATATATAAGGTTGCCAGGAA+GGG 0.568067 1_2:-61373421 Msa0082530:intron
TTACCGACGTGCAACCTCAA+TGG 0.568943 1_2:-61372292 Msa0082530:CDS
TTTGAGGGGAGGTTTCGTCA+TGG 0.570500 1_2:+61370452 None:intergenic
TCGCTCCGCGAGGACATGGT+TGG 0.570780 1_2:+61370360 None:intergenic
GTGAGGATTGTTGAAGAATG+TGG 0.571926 1_2:-61370115 Msa0082530:CDS
ATGTGCTTCCTTGTCACCTG+AGG 0.574896 1_2:-61376772 Msa0082530:CDS
GTATTTGAGGAGGCATTGGG+AGG 0.574965 1_2:+61370510 None:intergenic
TTGATGTTATGGTAATGTTG+AGG 0.575487 1_2:-61369979 Msa0082530:CDS
GTCTTGATTGGGATTTGTAG+AGG 0.577629 1_2:+61372398 None:intergenic
GGAGTTGAGGGCTAAGGTGA+AGG 0.582755 1_2:-61369897 Msa0082530:CDS
TGTAGAGGGTGGGTCTGCCA+TGG 0.583492 1_2:+61372413 None:intergenic
TGCCGCGTAACTTGGCGGAG+GGG 0.583617 1_2:+61370410 None:intergenic
CGGGTCAAATAATTTAGACT+CGG 0.585244 1_2:-61372196 Msa0082530:CDS
GTCTGCCATGGTGTACATGA+TGG 0.591460 1_2:+61372425 None:intergenic
GACCCCTCCGCCAAGTTACG+CGG 0.591527 1_2:-61370412 Msa0082530:CDS
GAGACAGCATGTATGGCTCA+CGG 0.591616 1_2:-61373388 Msa0082530:CDS
TTCAAAACCAATCAACACAA+TGG 0.597027 1_2:-61370651 Msa0082530:CDS
TGTTAGGTCCTCAGGTGACA+AGG 0.602958 1_2:+61376764 None:intergenic
GGTTCCAATTGAAGAACCTG+TGG 0.606596 1_2:-61372091 Msa0082530:CDS
TTGGCGCTCAGCTCGTCTTG+CGG 0.606797 1_2:+61370379 None:intergenic
ACAAAGTAGAAGTGGTGTAA+CGG 0.607690 1_2:-61370167 Msa0082530:CDS
GGGTTGGGTCTCCAAACGAC+GGG 0.610298 1_2:-61372215 Msa0082530:CDS
AGGAAACCCGTCAGGACACG+TGG 0.614112 1_2:-61372145 Msa0082530:CDS
CGTCGTTGAGTTTGGCACAA+CGG 0.614890 1_2:-61372956 Msa0082530:CDS
TCGAAAGACAGTGCAACCAA+TGG 0.615013 1_2:-61376895 Msa0082530:exon
TAAGTGATGTAGTTGATGGA+AGG 0.615344 1_2:+61370613 None:intergenic
ACCAATGGAGGTTAGTGCAG+AGG 0.616075 1_2:-61376880 Msa0082530:exon
AAAGACAGTGCAACCAATGG+AGG 0.619772 1_2:-61376892 Msa0082530:exon
ATGGCTCACGGGTGCAAATG+AGG 0.624999 1_2:-61373376 Msa0082530:CDS
CGGGTTGGGTCTCCAAACGA+CGG 0.625009 1_2:-61372216 Msa0082530:CDS
ACTTGTAGCGAATTACCCAC+AGG 0.629882 1_2:+61372075 None:intergenic
GTATGCATTCCTGTATTGGA+TGG 0.632942 1_2:-61372979 Msa0082530:CDS
TGAGTTACTTACCCTACACC+AGG 0.633728 1_2:+61376696 None:intergenic
TGGGGTGATGGATATTACAA+TGG 0.635135 1_2:-61376930 None:intergenic
CTCTTCTTCGTCGCTCCGCG+AGG 0.637033 1_2:+61370350 None:intergenic
GAAGAGAGAAACTCAACGAG+AGG 0.637311 1_2:-61370333 Msa0082530:CDS
AAATCCCAATCAAGACGACA+TGG 0.638757 1_2:-61372391 Msa0082530:CDS
GCCATGGTGTACATGATGGT+AGG 0.641072 1_2:+61372429 None:intergenic
GCTAAGGTGAAGGAAAATGG+TGG 0.644258 1_2:-61369887 Msa0082530:CDS
TCAGGTGACAAGGAAGCACA+TGG 0.644950 1_2:+61376774 None:intergenic
GGAGGTATGGGACTGTGAAG+AGG 0.648050 1_2:+61370485 None:intergenic
CCTCAAACCCATGATGCAGG+AGG 0.651461 1_2:-61370436 Msa0082530:CDS
TGAAGAGGATGTATTTGAGG+AGG 0.655583 1_2:+61370500 None:intergenic
GCTCACGGGTGCAAATGAGG+TGG 0.662470 1_2:-61373373 Msa0082530:CDS
GTTGGTGAAAGAGGATTGGG+AGG 0.663743 1_2:+61370588 None:intergenic
GTTCCAATTGAAGAACCTGT+GGG 0.680082 1_2:-61372090 Msa0082530:CDS
CATGATGGTAGGAATGTGAT+CGG 0.682068 1_2:+61372440 None:intergenic
AGACGACATGGATGAAGACG+AGG 0.694697 1_2:-61372379 Msa0082530:CDS
GAGCGCCAACCATGTCCTCG+CGG 0.700534 1_2:-61370365 Msa0082530:CDS
GAATCTGAAGACGAAACAGG+AGG 0.710791 1_2:-61372318 Msa0082530:CDS
TCCTACCATCATGTACACCA+TGG 0.714693 1_2:-61372430 Msa0082530:CDS
GTTACTTACCCTACACCAGG+AGG 0.750268 1_2:+61376699 None:intergenic
CTGCCATTGAGGTTGCACGT+CGG 0.759083 1_2:+61372289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATATTGAAATAACTT+TGG - chr1_2:61370713-61370732 Msa0082530:CDS 10.0%
!!! AAAATTATTTTTTGTGTTAA+AGG + chr1_2:61370984-61371003 None:intergenic 10.0%
!!! ATTTTATTTTTGGAAAAAAT+TGG - chr1_2:61371565-61371584 Msa0082530:intron 10.0%
!!! TTTTATTTTTGGAAAAAATT+GGG - chr1_2:61371566-61371585 Msa0082530:intron 10.0%
!! AATAAAGATATAATATTTGA+CGG + chr1_2:61371690-61371709 None:intergenic 10.0%
!! AAATTAAAATTAGATAAAAC+GGG + chr1_2:61373691-61373710 None:intergenic 10.0%
!! CAAATTAAAATTAGATAAAA+CGG + chr1_2:61373692-61373711 None:intergenic 10.0%
!! ATTTAAAAAACATAAGTATA+AGG + chr1_2:61374183-61374202 None:intergenic 10.0%
!!! TTAATTAATTTCTAGATTTT+GGG + chr1_2:61374914-61374933 None:intergenic 10.0%
!! TACATATATATATATATATG+TGG - chr1_2:61375065-61375084 Msa0082530:intron 10.0%
!!! TTTGAGTTTTTTTTTTTTTT+TGG + chr1_2:61375637-61375656 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_2:61374988-61375007 Msa0082530:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_2:61374988-61375007 Msa0082530:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr1_2:61374988-61375007 Msa0082530:intron 100.0%
! GGGGGGGGGGGGGGGGGGGC+TGG - chr1_2:61374994-61375013 Msa0082530:intron 100.0%
!! AATTAAAATCTAAAAAAACG+TGG + chr1_2:61370242-61370261 None:intergenic 15.0%
!!! TATATTATATGACTTTTGAT+TGG + chr1_2:61370536-61370555 None:intergenic 15.0%
!!! TATTTTTACATAGACAAAAT+AGG - chr1_2:61371232-61371251 Msa0082530:intron 15.0%
!!! GATTTTCTATTAGATTAATT+TGG + chr1_2:61371611-61371630 None:intergenic 15.0%
!! TATATTACATAACAAATAGA+AGG + chr1_2:61372412-61372431 None:intergenic 15.0%
!!! TTCTATTTGTTATGTAATAT+AGG - chr1_2:61372411-61372430 Msa0082530:CDS 15.0%
!! TATGAAATTATTACTACTTT+AGG - chr1_2:61372599-61372618 Msa0082530:intron 15.0%
!!! GTATTATTTTAATCTTATGT+AGG + chr1_2:61372834-61372853 None:intergenic 15.0%
!! ACATAGTATTTAGTTATATA+TGG - chr1_2:61372858-61372877 Msa0082530:intron 15.0%
!!! TTTTAATATTCTACTCTAAT+AGG - chr1_2:61372896-61372915 Msa0082530:intron 15.0%
!! ATTATATTGCACTATATATA+AGG - chr1_2:61373364-61373383 Msa0082530:CDS 15.0%
!!! TAGATAAAAAGTACTATTTT+GGG + chr1_2:61373762-61373781 None:intergenic 15.0%
!!! TTAGATAAAAAGTACTATTT+TGG + chr1_2:61373763-61373782 None:intergenic 15.0%
!!! AAATAGTACTTTTTATCTAA+TGG - chr1_2:61373763-61373782 Msa0082530:intron 15.0%
!!! CTTAATTAATTTCTAGATTT+TGG + chr1_2:61374915-61374934 None:intergenic 15.0%
!! AGTAAAACATTTATATAAAG+AGG - chr1_2:61375561-61375580 Msa0082530:intron 15.0%
!!! AGTTTTTTTTTTTTTTTGGA+AGG + chr1_2:61375633-61375652 None:intergenic 15.0%
!! AGTATTAACAAGATTCAATA+TGG + chr1_2:61370429-61370448 None:intergenic 20.0%
!!! TAATTTTGTTACATTTTGAG+TGG - chr1_2:61370489-61370508 Msa0082530:CDS 20.0%
!! TTCAATATTATTATGCTTCA+TGG + chr1_2:61370706-61370725 None:intergenic 20.0%
!! AATATTGAAATAACTTTGGT+AGG - chr1_2:61370717-61370736 Msa0082530:CDS 20.0%
!! TTAGGAGAATAAAGAAATTA+TGG - chr1_2:61370830-61370849 Msa0082530:intron 20.0%
!!! GTTTTTATGTTGAAAAATAG+AGG - chr1_2:61371271-61371290 Msa0082530:intron 20.0%
!!! TTGCTAGTTTGTAAAAATTA+AGG + chr1_2:61371371-61371390 None:intergenic 20.0%
!!! GCATCTTTTGATTTTATTTT+TGG - chr1_2:61371555-61371574 Msa0082530:intron 20.0%
!!! TTAGATTAATTTGGCAAATT+TGG + chr1_2:61371602-61371621 None:intergenic 20.0%
!!! ATATCATTGCTATCTTTTAA+GGG + chr1_2:61371662-61371681 None:intergenic 20.0%
!!! TATATCATTGCTATCTTTTA+AGG + chr1_2:61371663-61371682 None:intergenic 20.0%
!!! AATTACTACCATTCTATTTT+TGG - chr1_2:61372082-61372101 Msa0082530:CDS 20.0%
!!! ATATGTGAAAAGTTTGAAAT+TGG + chr1_2:61372146-61372165 None:intergenic 20.0%
!!! TTTTTTTTATAGCTTCACAT+AGG - chr1_2:61372200-61372219 Msa0082530:CDS 20.0%
!! AGACTAATCTACATTATTTA+TGG + chr1_2:61372337-61372356 None:intergenic 20.0%
!! AAAAGAACCAACAATTAATT+TGG + chr1_2:61372572-61372591 None:intergenic 20.0%
!!! ATTAATTGTTGGTTCTTTTT+AGG - chr1_2:61372573-61372592 Msa0082530:intron 20.0%
!!! TTAATTGTTGGTTCTTTTTA+GGG - chr1_2:61372574-61372593 Msa0082530:intron 20.0%
!! TTAAAATGATTCATTAAGAG+TGG + chr1_2:61372721-61372740 None:intergenic 20.0%
!! AAGAGTAGTGTTTAATAATA+AGG - chr1_2:61372783-61372802 Msa0082530:intron 20.0%
!! GTATTTAGTTATATATGGTA+CGG - chr1_2:61372863-61372882 Msa0082530:intron 20.0%
!! TACTTCCTATTAGAATTAAA+TGG + chr1_2:61373719-61373738 None:intergenic 20.0%
!!! AGATAAAAAGTACTATTTTG+GGG + chr1_2:61373761-61373780 None:intergenic 20.0%
!! TTTCATCTATATCTCATATT+AGG - chr1_2:61373878-61373897 Msa0082530:intron 20.0%
!! ATTAATTAAGCACATATTGA+TGG - chr1_2:61374925-61374944 Msa0082530:intron 20.0%
!!! ATCTTGATAATATATTGCAT+GGG + chr1_2:61375232-61375251 None:intergenic 20.0%
!!! TATCTTGATAATATATTGCA+TGG + chr1_2:61375233-61375252 None:intergenic 20.0%
!!! TTAGTAGAAACTATTTTTGA+AGG + chr1_2:61375340-61375359 None:intergenic 20.0%
!! CTAATTTATTATGAGTAAAC+AGG - chr1_2:61375356-61375375 Msa0082530:intron 20.0%
!! AAAGTATAAAATCATTTCGT+TGG - chr1_2:61375401-61375420 Msa0082530:intron 20.0%
!! AGAAGTTAAAGTTAAATGAT+CGG - chr1_2:61375471-61375490 Msa0082530:intron 20.0%
!!! TTTGTTTTAACATTAGCAAA+TGG + chr1_2:61375660-61375679 None:intergenic 20.0%
!! TTCATTCAAAATTTATGTGT+TGG + chr1_2:61375778-61375797 None:intergenic 20.0%
!!! GTTCATTATTTTAAGATCAT+TGG - chr1_2:61376487-61376506 Msa0082530:intron 20.0%
!! AGATAAGAAATAATGGAAGA+AGG + chr1_2:61370128-61370147 None:intergenic 25.0%
!!! GTTCTTTTGAAGATAAGTAA+AGG - chr1_2:61370602-61370621 Msa0082530:CDS 25.0%
! TAAAGACAGAAGAATTATGT+TGG + chr1_2:61370667-61370686 None:intergenic 25.0%
! AATATTATTATGCTTCATGG+AGG + chr1_2:61370703-61370722 None:intergenic 25.0%
! TATTTATATGTCCTCTAGTT+AGG - chr1_2:61370812-61370831 Msa0082530:intron 25.0%
! AAAAGCTAACTTAGCATAAT+TGG + chr1_2:61370950-61370969 None:intergenic 25.0%
! GGAATATATATCCACAAATA+TGG - chr1_2:61371190-61371209 Msa0082530:intron 25.0%
! ATAATAGATGTCCATATTTG+TGG + chr1_2:61371204-61371223 None:intergenic 25.0%
!! ATCGATGTGTTACAATTTTA+CGG + chr1_2:61371400-61371419 None:intergenic 25.0%
! AGAATGGTAGTAATTAAGTA+GGG + chr1_2:61372077-61372096 None:intergenic 25.0%
! TAGAATGGTAGTAATTAAGT+AGG + chr1_2:61372078-61372097 None:intergenic 25.0%
! GAAAACTTCCAAAAATAGAA+TGG + chr1_2:61372093-61372112 None:intergenic 25.0%
!!! AATAAGATGTAGCTTTAGAT+AGG - chr1_2:61372311-61372330 Msa0082530:CDS 25.0%
! TTGATGTCATTGTAATCTAT+AGG - chr1_2:61372540-61372559 Msa0082530:CDS 25.0%
! TCAAGTAGGATAAAATAAGT+TGG - chr1_2:61372932-61372951 Msa0082530:intron 25.0%
!!! AAGTTGGTAGTATTAAATAC+AGG - chr1_2:61372948-61372967 Msa0082530:intron 25.0%
!!! AGTTGGTAGTATTAAATACA+GGG - chr1_2:61372949-61372968 Msa0082530:intron 25.0%
!! TTAGGTTGTCATATAGTATA+AGG + chr1_2:61372975-61372994 None:intergenic 25.0%
! ATGACAACCTAAACAAATTT+AGG - chr1_2:61372983-61373002 Msa0082530:CDS 25.0%
!! ACTAGTACCTAAATTTGTTT+AGG + chr1_2:61372993-61373012 None:intergenic 25.0%
! TATTATTATTGATGTACCAC+CGG - chr1_2:61373017-61373036 Msa0082530:intron 25.0%
! GTCATTAATAATTGTGTGAT+AGG - chr1_2:61373108-61373127 Msa0082530:intron 25.0%
! CGATATTATTAATAAGTGTG+TGG - chr1_2:61373186-61373205 Msa0082530:intron 25.0%
!! ATTAATAAGTGTGTGGATTA+TGG - chr1_2:61373193-61373212 Msa0082530:intron 25.0%
! AACATGATTGATGTTATGAT+CGG + chr1_2:61373269-61373288 None:intergenic 25.0%
! TAAAATTAGATAAAACGGGT+TGG + chr1_2:61373687-61373706 None:intergenic 25.0%
! GTTCTCCATTTAATTCTAAT+AGG - chr1_2:61373711-61373730 Msa0082530:intron 25.0%
! ATTAGGTTTAGATTGTCTAA+TGG - chr1_2:61373895-61373914 Msa0082530:intron 25.0%
! ATAATGTTCGTGTAGTAATT+TGG - chr1_2:61373993-61374012 Msa0082530:intron 25.0%
! ACTATTAATTTACCTGAAGA+TGG + chr1_2:61374756-61374775 None:intergenic 25.0%
! ACATATAATAAGATTAGGCA+CGG - chr1_2:61374962-61374981 Msa0082530:intron 25.0%
!! TCTTGATAATATATTGCATG+GGG + chr1_2:61375231-61375250 None:intergenic 25.0%
!!! TCAACTTTGTTTTGAGTTAA+TGG - chr1_2:61375441-61375460 Msa0082530:intron 25.0%
! GAAGTTAAAGTTAAATGATC+GGG - chr1_2:61375472-61375491 Msa0082530:intron 25.0%
! AAGTTAAAGTTAAATGATCG+GGG - chr1_2:61375473-61375492 Msa0082530:intron 25.0%
! TTACAATCAACATATAGAGT+TGG + chr1_2:61375516-61375535 None:intergenic 25.0%
! ACTTCTAACAAACAACAATT+TGG - chr1_2:61375723-61375742 Msa0082530:intron 25.0%
!! ATTTTGAATGAATGAGATCT+AGG - chr1_2:61375786-61375805 Msa0082530:intron 25.0%
!! TTTTGAATGAATGAGATCTA+GGG - chr1_2:61375787-61375806 Msa0082530:intron 25.0%
! TTATGTTGACATCAATTCAT+TGG - chr1_2:61375922-61375941 Msa0082530:intron 25.0%
! GCTTGCTAGATAAGAAATAA+TGG + chr1_2:61370135-61370154 None:intergenic 30.0%
TGTAAAGAGAAAGCTAGTAT+AGG + chr1_2:61370199-61370218 None:intergenic 30.0%
TTCTTTATTCTCCTAACTAG+AGG + chr1_2:61370826-61370845 None:intergenic 30.0%
TATTCCTAAAATGTTGCTGA+CGG + chr1_2:61371176-61371195 None:intergenic 30.0%
AACGGCTAAACTTAATATAG+TGG + chr1_2:61371438-61371457 None:intergenic 30.0%
! AAAAGATGCCATTTGTTTCT+TGG + chr1_2:61371544-61371563 None:intergenic 30.0%
! AAAGATCGTTTGTTAACGTT+AGG + chr1_2:61371744-61371763 None:intergenic 30.0%
GTGTATTAGAATGTATTCTG+AGG - chr1_2:61371890-61371909 Msa0082530:intron 30.0%
CATAGGAACATAACATCAAT+TGG - chr1_2:61372217-61372236 Msa0082530:CDS 30.0%
AACATAACATCAATTGGTCA+CGG - chr1_2:61372223-61372242 Msa0082530:CDS 30.0%
! GTCTGATTAGTTCTTGATTA+TGG - chr1_2:61372288-61372307 Msa0082530:CDS 30.0%
ATAATAGAGTTGAGAGAAGT+AGG - chr1_2:61372476-61372495 Msa0082530:CDS 30.0%
TAAAAAGCAACGAATTCGAA+TGG + chr1_2:61372642-61372661 None:intergenic 30.0%
GATTCATTATTCTCTCAAGT+AGG - chr1_2:61372918-61372937 Msa0082530:intron 30.0%
! TATGGATGTTAGTATTTTGC+CGG + chr1_2:61373039-61373058 None:intergenic 30.0%
! TGAAAGTGTACTTGAATCTA+TGG + chr1_2:61373057-61373076 None:intergenic 30.0%
GTTTAGATTGTCTAATGGTA+TGG - chr1_2:61373900-61373919 Msa0082530:intron 30.0%
! CACGAACATTATTTTCATCA+CGG + chr1_2:61373985-61374004 None:intergenic 30.0%
TCACGTGTTTGATGAAATTA+AGG + chr1_2:61374257-61374276 None:intergenic 30.0%
TTACTAGTTGTGAGTAATCA+AGG - chr1_2:61374633-61374652 Msa0082530:intron 30.0%
AAAGATTAACGTTGTATGCT+TGG + chr1_2:61374852-61374871 None:intergenic 30.0%
AATTAAGCACATATTGATGG+AGG - chr1_2:61374928-61374947 Msa0082530:intron 30.0%
GGACCACATATAATAAGATT+AGG - chr1_2:61374957-61374976 Msa0082530:intron 30.0%
GTGCCTAATCTTATTATATG+TGG + chr1_2:61374963-61374982 None:intergenic 30.0%
ATATATGTATAGATCTCTGC+TGG + chr1_2:61375054-61375073 None:intergenic 30.0%
GACAATGGAATTAATTAGGA+TGG + chr1_2:61375092-61375111 None:intergenic 30.0%
GGTAGACAATGGAATTAATT+AGG + chr1_2:61375096-61375115 None:intergenic 30.0%
!!! TGATTATTTTTGGACTTTGG+TGG + chr1_2:61375172-61375191 None:intergenic 30.0%
!!! GTGTGATTATTTTTGGACTT+TGG + chr1_2:61375175-61375194 None:intergenic 30.0%
! CTTGATAATATATTGCATGG+GGG + chr1_2:61375230-61375249 None:intergenic 30.0%
AGAAACACATTAATTGCATG+CGG - chr1_2:61375590-61375609 Msa0082530:intron 30.0%
! TTGTTTGTTAGAAGTGAAGT+TGG + chr1_2:61375718-61375737 None:intergenic 30.0%
TCTAACAAACAACAATTTGG+AGG - chr1_2:61375726-61375745 Msa0082530:intron 30.0%
CTAACAAACAACAATTTGGA+GGG - chr1_2:61375727-61375746 Msa0082530:intron 30.0%
!!! TGTTGATTGGTTTTGAATGA+TGG + chr1_2:61376144-61376163 None:intergenic 30.0%
TTCAAAACCAATCAACACAA+TGG - chr1_2:61376147-61376166 Msa0082530:intron 30.0%
ATGGACAAAGCTTCTATATT+AGG - chr1_2:61376527-61376546 Msa0082530:intron 30.0%
! TTGATGTTATGGTAATGTTG+AGG - chr1_2:61376819-61376838 Msa0082530:CDS 30.0%
! TGATGTTATGGTAATGTTGA+GGG - chr1_2:61376820-61376839 Msa0082530:CDS 30.0%
!! CAATAATGGTGTTTTTGTTG+CGG - chr1_2:61376880-61376899 Msa0082530:exon 30.0%
AGAACCATTCAGATTCTGTT+AGG + chr1_2:61370053-61370072 None:intergenic 35.0%
GCTCACATGTATTTAACAAC+AGG + chr1_2:61370879-61370898 None:intergenic 35.0%
ACCAAAATGCATATCTAACC+GGG + chr1_2:61371079-61371098 None:intergenic 35.0%
CACCAAAATGCATATCTAAC+CGG + chr1_2:61371080-61371099 None:intergenic 35.0%
!! GTTAGATATGCATTTTGGTG+AGG - chr1_2:61371080-61371099 Msa0082530:intron 35.0%
GGCTAAACTTAATATAGTGG+CGG + chr1_2:61371435-61371454 None:intergenic 35.0%
TTTAGCCGTTGTAGAGATTA+TGG - chr1_2:61371448-61371467 Msa0082530:intron 35.0%
TCATGCCATAATCTCTACAA+CGG + chr1_2:61371456-61371475 None:intergenic 35.0%
GACATGTCATTACAAGTTTG+TGG - chr1_2:61371827-61371846 Msa0082530:intron 35.0%
TGAGCATTATATGCTTGAAG+AGG - chr1_2:61371956-61371975 Msa0082530:intron 35.0%
CATTATATGCTTGAAGAGGA+CGG - chr1_2:61371960-61371979 Msa0082530:intron 35.0%
ATCAGACTCATTGCAATATC+TGG + chr1_2:61372275-61372294 None:intergenic 35.0%
GAAGTAGGATTCGATTAGAA+TGG - chr1_2:61372491-61372510 Msa0082530:CDS 35.0%
GAAGCAGCCAAATTAATTGT+TGG - chr1_2:61372562-61372581 Msa0082530:intron 35.0%
TAGTTATATATGGTACGGAG+TGG - chr1_2:61372868-61372887 Msa0082530:intron 35.0%
AGTTATATATGGTACGGAGT+GGG - chr1_2:61372869-61372888 Msa0082530:intron 35.0%
CTCAAAACACACAAAATCAC+AGG + chr1_2:61373335-61373354 None:intergenic 35.0%
TATATATAAGGTTGCCAGGA+AGG - chr1_2:61373376-61373395 Msa0082530:CDS 35.0%
ATATATAAGGTTGCCAGGAA+GGG - chr1_2:61373377-61373396 Msa0082530:CDS 35.0%
! TTCAAGAGCTATTCTAGCTA+AGG - chr1_2:61373461-61373480 Msa0082530:intron 35.0%
! TATTCTAGCTAAGGTGATCA+CGG - chr1_2:61373470-61373489 Msa0082530:intron 35.0%
! TCCTCTTGTTTCTCAATCAT+TGG - chr1_2:61373615-61373634 Msa0082530:intron 35.0%
ATCATTGGCAAAATTTCCAC+CGG - chr1_2:61373630-61373649 Msa0082530:intron 35.0%
!! AATTAGATAAAACGGGTTGG+AGG + chr1_2:61373684-61373703 None:intergenic 35.0%
CATGTACAATTTACAGACTG+TGG - chr1_2:61373797-61373816 Msa0082530:intron 35.0%
ATGTTCGTGTAGTAATTTGG+TGG - chr1_2:61373996-61374015 Msa0082530:intron 35.0%
TGTTCGTGTAGTAATTTGGT+GGG - chr1_2:61373997-61374016 Msa0082530:intron 35.0%
TCTTGATTGGGATTTGTAGA+GGG + chr1_2:61374402-61374421 None:intergenic 35.0%
TTGAAATGCCCGATGATATT+CGG - chr1_2:61374562-61374581 Msa0082530:intron 35.0%
AAATTATTTGACCCGTCGTT+TGG + chr1_2:61374597-61374616 None:intergenic 35.0%
CGGGTCAAATAATTTAGACT+CGG - chr1_2:61374602-61374621 Msa0082530:intron 35.0%
! AAACCGATTCAACACAAAGA+TGG - chr1_2:61374685-61374704 Msa0082530:intron 35.0%
! AACCGATTCAACACAAAGAT+GGG - chr1_2:61374686-61374705 Msa0082530:intron 35.0%
AACCCATCTTTGTGTTGAAT+CGG + chr1_2:61374691-61374710 None:intergenic 35.0%
TAATAAGATTAGGCACGGTT+TGG - chr1_2:61374967-61374986 Msa0082530:intron 35.0%
AATAAGATTAGGCACGGTTT+GGG - chr1_2:61374968-61374987 Msa0082530:intron 35.0%
AAAAATAATCACACCCCACA+CGG - chr1_2:61375181-61375200 Msa0082530:intron 35.0%
ACGTCTATAATTTACCGTGT+GGG + chr1_2:61375198-61375217 None:intergenic 35.0%
TTGTTAGAAGTGAAGTTGGA+TGG + chr1_2:61375714-61375733 None:intergenic 35.0%
!!! GAGGGTGTCTTTTTATTTCT+TGG - chr1_2:61375745-61375764 Msa0082530:intron 35.0%
AAACCGAATTCCCAAAAAAG+TGG - chr1_2:61375810-61375829 Msa0082530:intron 35.0%
!!! ATGCCACTTTTTTGGGAATT+CGG + chr1_2:61375816-61375835 None:intergenic 35.0%
!!! AACATGCATGCCACTTTTTT+GGG + chr1_2:61375823-61375842 None:intergenic 35.0%
!!! AAACATGCATGCCACTTTTT+TGG + chr1_2:61375824-61375843 None:intergenic 35.0%
! CAATGTTCCATTGTGTTGAT+TGG + chr1_2:61376157-61376176 None:intergenic 35.0%
!! TAAGTGATGTAGTTGATGGA+AGG + chr1_2:61376188-61376207 None:intergenic 35.0%
ACTGAACAACAAAGTAGAAG+TGG - chr1_2:61376623-61376642 Msa0082530:intron 35.0%
ACAAAGTAGAAGTGGTGTAA+CGG - chr1_2:61376631-61376650 Msa0082530:intron 35.0%
TATTGAGAGTGATGCTTTGT+TGG - chr1_2:61376763-61376782 Msa0082530:CDS 35.0%
ATTGAGTGTTTGCATAGAGA+AGG - chr1_2:61376788-61376807 Msa0082530:CDS 35.0%
! AGGATTGTTGCTTGATGTTA+TGG - chr1_2:61376808-61376827 Msa0082530:CDS 35.0%
! TGAAGGAAAATGGTGGAAAT+GGG - chr1_2:61376918-61376937 Msa0082530:five_prime_UTR 35.0%
CATAGAGTTCTCTTAGTTGC+TGG + chr1_2:61369963-61369982 None:intergenic 40.0%
CTCTATGAATCATTGTCTGC+CGG - chr1_2:61369976-61369995 Msa0082530:CDS 40.0%
AGGACCTAACAGAATCTGAA+TGG - chr1_2:61370046-61370065 Msa0082530:CDS 40.0%
ATGGTTTCTCTCAATGAGAG+AGG - chr1_2:61370849-61370868 Msa0082530:intron 40.0%
! TATCAATGCAGTTTTTCCCC+CGG - chr1_2:61371058-61371077 Msa0082530:intron 40.0%
CAAAATGCATATCTAACCGG+GGG + chr1_2:61371077-61371096 None:intergenic 40.0%
CCAAAATGCATATCTAACCG+GGG + chr1_2:61371078-61371097 None:intergenic 40.0%
TAGCATTTAAGCAACACTCG+CGG + chr1_2:61371129-61371148 None:intergenic 40.0%
CTGACGGTTCATAAATTCGT+AGG + chr1_2:61371160-61371179 None:intergenic 40.0%
! TGAACCGTCAGCAACATTTT+AGG - chr1_2:61371169-61371188 Msa0082530:intron 40.0%
! CCATTTGTTTCTTGGAGATG+CGG + chr1_2:61371536-61371555 None:intergenic 40.0%
CGAATAAGAGTTTGCATAGC+TGG - chr1_2:61371920-61371939 Msa0082530:intron 40.0%
TTGGTCACGGTTTATGAAGA+TGG - chr1_2:61372236-61372255 Msa0082530:CDS 40.0%
TGGTCACGGTTTATGAAGAT+GGG - chr1_2:61372237-61372256 Msa0082530:CDS 40.0%
GCACTATATATAAGGTTGCC+AGG - chr1_2:61373372-61373391 Msa0082530:CDS 40.0%
ACACAAAGAGACAGCATGTA+TGG - chr1_2:61373403-61373422 Msa0082530:CDS 40.0%
GCCAATGATTGAGAAACAAG+AGG + chr1_2:61373619-61373638 None:intergenic 40.0%
CTGTATATTAGCACTCTAGC+CGG + chr1_2:61373652-61373671 None:intergenic 40.0%
TGTGGTATGCATTCCTGTAT+TGG - chr1_2:61373815-61373834 Msa0082530:intron 40.0%
GTATGCATTCCTGTATTGGA+TGG - chr1_2:61373819-61373838 Msa0082530:intron 40.0%
!! GTGTAGTAATTTGGTGGGTT+GGG - chr1_2:61374002-61374021 Msa0082530:intron 40.0%
CATGATGGTAGGAATGTGAT+CGG + chr1_2:61374361-61374380 None:intergenic 40.0%
GTCTTGATTGGGATTTGTAG+AGG + chr1_2:61374403-61374422 None:intergenic 40.0%
AAATCCCAATCAAGACGACA+TGG - chr1_2:61374407-61374426 Msa0082530:intron 40.0%
TCATCCATGTCGTCTTGATT+GGG + chr1_2:61374414-61374433 None:intergenic 40.0%
TTCATCCATGTCGTCTTGAT+TGG + chr1_2:61374415-61374434 None:intergenic 40.0%
TCAGAATCTGAAGACGAAAC+AGG - chr1_2:61374477-61374496 Msa0082530:intron 40.0%
TGAAATGCCCGATGATATTC+GGG - chr1_2:61374563-61374582 Msa0082530:intron 40.0%
GTTCCAATTGAAGAACCTGT+GGG - chr1_2:61374708-61374727 Msa0082530:intron 40.0%
TTACCCACAGGTTCTTCAAT+TGG + chr1_2:61374714-61374733 None:intergenic 40.0%
CAAGTTCAACTACCATCTTC+AGG - chr1_2:61374741-61374760 Msa0082530:intron 40.0%
TAAGCACATATTGATGGAGG+AGG - chr1_2:61374931-61374950 Msa0082530:intron 40.0%
ACATATTGATGGAGGAGGAT+TGG - chr1_2:61374936-61374955 Msa0082530:intron 40.0%
ATAAGATTAGGCACGGTTTG+GGG - chr1_2:61374969-61374988 Msa0082530:intron 40.0%
!! CATTGTCTACCCCATTTTTG+CGG - chr1_2:61375105-61375124 Msa0082530:intron 40.0%
!! ATTGTCTACCCCATTTTTGC+GGG - chr1_2:61375106-61375125 Msa0082530:intron 40.0%
GCTCCACTTCTATGCAAAAT+GGG - chr1_2:61375128-61375147 Msa0082530:intron 40.0%
! AGTCCCATTTTGCATAGAAG+TGG + chr1_2:61375134-61375153 None:intergenic 40.0%
! GTGTGGGGTGTGATTATTTT+TGG + chr1_2:61375182-61375201 None:intergenic 40.0%
CGTCTATAATTTACCGTGTG+GGG + chr1_2:61375197-61375216 None:intergenic 40.0%
CACGTCTATAATTTACCGTG+TGG + chr1_2:61375199-61375218 None:intergenic 40.0%
GGAGTAAGTGATGTAGTTGA+TGG + chr1_2:61376192-61376211 None:intergenic 40.0%
!! GATGTATTTGAGGAGGCATT+GGG + chr1_2:61376294-61376313 None:intergenic 40.0%
TGAAGAGGATGTATTTGAGG+AGG + chr1_2:61376301-61376320 None:intergenic 40.0%
CTGTGAAGAGGATGTATTTG+AGG + chr1_2:61376304-61376323 None:intergenic 40.0%
!!! TTTCGTCATGGTTTTTGGTG+TGG + chr1_2:61376337-61376356 None:intergenic 40.0%
! TTGTCCATTTTCGTCACGAA+TGG + chr1_2:61376515-61376534 None:intergenic 40.0%
GTTGTTCAGTCTCTATCTGA+CGG + chr1_2:61376613-61376632 None:intergenic 40.0%
! TAGAAGTGGTGTAACGGTTT+TGG - chr1_2:61376637-61376656 Msa0082530:intron 40.0%
! CTCACCTTTTTCTTCTCTGT+TGG + chr1_2:61376668-61376687 None:intergenic 40.0%
CAACAGAGAAGAAAAAGGTG+AGG - chr1_2:61376666-61376685 Msa0082530:intron 40.0%
GTGAGGATTGTTGAAGAATG+TGG - chr1_2:61376683-61376702 Msa0082530:intron 40.0%
GAGTTGAGGATTGAGGTTAT+TGG - chr1_2:61376842-61376861 Msa0082530:CDS 40.0%
GTTCAGTCTTCGCTCAATAA+TGG - chr1_2:61376866-61376885 Msa0082530:CDS 40.0%
!! TGTTTTTGTTGCGGAGTTGA+GGG - chr1_2:61376889-61376908 Msa0082530:exon 40.0%
! GTGAAGGAAAATGGTGGAAA+TGG - chr1_2:61376917-61376936 Msa0082530:five_prime_UTR 40.0%
TCGAAAGACAGTGCAACCAA+TGG - chr1_2:61369903-61369922 Msa0082530:CDS 45.0%
AAAGACAGTGCAACCAATGG+AGG - chr1_2:61369906-61369925 Msa0082530:CDS 45.0%
!! AGTTGGTGGATTTGTCTCTC+CGG + chr1_2:61369998-61370017 None:intergenic 45.0%
TCAGATTCTGTTAGGTCCTC+AGG + chr1_2:61370045-61370064 None:intergenic 45.0%
! GTCTCTTTCTCTTTTCCTCC+TGG - chr1_2:61370084-61370103 Msa0082530:CDS 45.0%
! TTCTCTTTTCCTCCTGGTGT+AGG - chr1_2:61370090-61370109 Msa0082530:CDS 45.0%
! TCTCTTTTCCTCCTGGTGTA+GGG - chr1_2:61370091-61370110 Msa0082530:CDS 45.0%
TGAGTTACTTACCCTACACC+AGG + chr1_2:61370105-61370124 None:intergenic 45.0%
! CCCCGGTTAGATATGCATTT+TGG - chr1_2:61371075-61371094 Msa0082530:intron 45.0%
AGCATTTAAGCAACACTCGC+GGG + chr1_2:61371128-61371147 None:intergenic 45.0%
GATGACACTTCACGTAAACC+CGG - chr1_2:61371498-61371517 Msa0082530:intron 45.0%
CCGCATCTCCAAGAAACAAA+TGG - chr1_2:61371533-61371552 Msa0082530:intron 45.0%
! GGATGTTAGTATTTTGCCGG+TGG + chr1_2:61373036-61373055 None:intergenic 45.0%
TATATTAGCACTCTAGCCGG+TGG + chr1_2:61373649-61373668 None:intergenic 45.0%
! CGGCTAGAGTGCTAATATAC+AGG - chr1_2:61373650-61373669 Msa0082530:intron 45.0%
TGAGTTTGGCACAACGGATA+AGG - chr1_2:61373848-61373867 Msa0082530:intron 45.0%
! CGTGTAGTAATTTGGTGGGT+TGG - chr1_2:61374001-61374020 Msa0082530:intron 45.0%
!! TGTTCTGAAAGTGCTGGCTT+TGG + chr1_2:61374312-61374331 None:intergenic 45.0%
!! GTTGAGTGTTCTGAAAGTGC+TGG + chr1_2:61374318-61374337 None:intergenic 45.0%
TGTGATCGGTTGAGGAAGTT+GGG + chr1_2:61374347-61374366 None:intergenic 45.0%
ATGTGATCGGTTGAGGAAGT+TGG + chr1_2:61374348-61374367 None:intergenic 45.0%
TCCTACCATCATGTACACCA+TGG - chr1_2:61374368-61374387 Msa0082530:intron 45.0%
GATTGGGATTTGTAGAGGGT+GGG + chr1_2:61374398-61374417 None:intergenic 45.0%
TGATTGGGATTTGTAGAGGG+TGG + chr1_2:61374399-61374418 None:intergenic 45.0%
GAATCTGAAGACGAAACAGG+AGG - chr1_2:61374480-61374499 Msa0082530:intron 45.0%
CTCTACAATAGCTGCCATTG+AGG + chr1_2:61374523-61374542 None:intergenic 45.0%
TCAATCTGCATCAGCTCACT+TGG + chr1_2:61374546-61374565 None:intergenic 45.0%
AGACCCAACCCGAATATCAT+CGG + chr1_2:61374574-61374593 None:intergenic 45.0%
AGTAATCAAGGAAACCCGTC+AGG - chr1_2:61374645-61374664 Msa0082530:intron 45.0%
GGTTCCAATTGAAGAACCTG+TGG - chr1_2:61374707-61374726 Msa0082530:intron 45.0%
ACTTGTAGCGAATTACCCAC+AGG + chr1_2:61374726-61374745 None:intergenic 45.0%
! TAAGATTAGGCACGGTTTGG+GGG - chr1_2:61374970-61374989 Msa0082530:intron 45.0%
AGATCTCTGCTGGAGAAAAC+AGG + chr1_2:61375044-61375063 None:intergenic 45.0%
CGCAAAAATGGGGTAGACAA+TGG + chr1_2:61375107-61375126 None:intergenic 45.0%
GGCTCCACTTCTATGCAAAA+TGG - chr1_2:61375127-61375146 Msa0082530:intron 45.0%
ATATATTGCATGGGGGAGCA+TGG + chr1_2:61375223-61375242 None:intergenic 45.0%
AGTGGCATGCATGTTTGCAT+TGG - chr1_2:61375828-61375847 Msa0082530:intron 45.0%
!! CCAGTTGGTGAAAGAGGATT+GGG + chr1_2:61376216-61376235 None:intergenic 45.0%
!! TCCAGTTGGTGAAAGAGGAT+TGG + chr1_2:61376217-61376236 None:intergenic 45.0%
! GGATGTATTTGAGGAGGCAT+TGG + chr1_2:61376295-61376314 None:intergenic 45.0%
!!! GGTTTTTGGTGTGGAGGTAT+GGG + chr1_2:61376328-61376347 None:intergenic 45.0%
!!! TGGTTTTTGGTGTGGAGGTA+TGG + chr1_2:61376329-61376348 None:intergenic 45.0%
! GGAGGTTTCGTCATGGTTTT+TGG + chr1_2:61376342-61376361 None:intergenic 45.0%
GAAGAGAGAAACTCAACGAG+AGG - chr1_2:61376465-61376484 Msa0082530:intron 45.0%
GGTTCCATTCGTGACGAAAA+TGG - chr1_2:61376508-61376527 Msa0082530:intron 45.0%
!! AAGTGGTGTAACGGTTTTGG+TGG - chr1_2:61376640-61376659 Msa0082530:intron 45.0%
!! AGTGGTGTAACGGTTTTGGT+GGG - chr1_2:61376641-61376660 Msa0082530:intron 45.0%
GGGTCCAACAGAGAAGAAAA+AGG - chr1_2:61376661-61376680 Msa0082530:intron 45.0%
! TGGTAATGTTGAGGGAGTTG+AGG - chr1_2:61376828-61376847 Msa0082530:CDS 45.0%
!! GTGTTTTTGTTGCGGAGTTG+AGG - chr1_2:61376888-61376907 Msa0082530:exon 45.0%
AGGGCTAAGGTGAAGGAAAA+TGG - chr1_2:61376908-61376927 Msa0082530:five_prime_UTR 45.0%
GCTAAGGTGAAGGAAAATGG+TGG - chr1_2:61376911-61376930 Msa0082530:five_prime_UTR 45.0%
ACCAATGGAGGTTAGTGCAG+AGG - chr1_2:61369918-61369937 Msa0082530:CDS 50.0%
TCCTCTGCACTAACCTCCAT+TGG + chr1_2:61369922-61369941 None:intergenic 50.0%
! TCAGGTGACAAGGAAGCACA+TGG + chr1_2:61370027-61370046 None:intergenic 50.0%
ATGTGCTTCCTTGTCACCTG+AGG - chr1_2:61370026-61370045 Msa0082530:CDS 50.0%
TGTTAGGTCCTCAGGTGACA+AGG + chr1_2:61370037-61370056 None:intergenic 50.0%
GTTACTTACCCTACACCAGG+AGG + chr1_2:61370102-61370121 None:intergenic 50.0%
CATTTAAGCAACACTCGCGG+GGG + chr1_2:61371126-61371145 None:intergenic 50.0%
GCATTTAAGCAACACTCGCG+GGG + chr1_2:61371127-61371146 None:intergenic 50.0%
TGGAGATGCGGCAATGATGT+GGG + chr1_2:61371524-61371543 None:intergenic 50.0%
TTGGAGATGCGGCAATGATG+TGG + chr1_2:61371525-61371544 None:intergenic 50.0%
AAGAGGACGGCAGCTATAGA+GGG - chr1_2:61371973-61371992 Msa0082530:intron 50.0%
CTCTTTGTGTATGCCCTTCC+TGG + chr1_2:61373393-61373412 None:intergenic 50.0%
GAGACAGCATGTATGGCTCA+CGG - chr1_2:61373410-61373429 Msa0082530:CDS 50.0%
AGACAGCATGTATGGCTCAC+GGG - chr1_2:61373411-61373430 Msa0082530:CDS 50.0%
TCAACGACGCCATCCAATAC+AGG + chr1_2:61373831-61373850 None:intergenic 50.0%
TTGGATGGCGTCGTTGAGTT+TGG - chr1_2:61373834-61373853 Msa0082530:intron 50.0%
CGTCGTTGAGTTTGGCACAA+CGG - chr1_2:61373842-61373861 Msa0082530:intron 50.0%
!! TCTGAAAGTGCTGGCTTTGG+CGG + chr1_2:61374309-61374328 None:intergenic 50.0%
! GGTTGAGGAAGTTGGGTTAG+AGG + chr1_2:61374340-61374359 None:intergenic 50.0%
GGTAGGAATGTGATCGGTTG+AGG + chr1_2:61374355-61374374 None:intergenic 50.0%
GCCATGGTGTACATGATGGT+AGG + chr1_2:61374372-61374391 None:intergenic 50.0%
GTCTGCCATGGTGTACATGA+TGG + chr1_2:61374376-61374395 None:intergenic 50.0%
AGACGACATGGATGAAGACG+AGG - chr1_2:61374419-61374438 Msa0082530:intron 50.0%
TTACCGACGTGCAACCTCAA+TGG - chr1_2:61374506-61374525 Msa0082530:intron 50.0%
ATGCCCGATGATATTCGGGT+TGG - chr1_2:61374567-61374586 Msa0082530:intron 50.0%
! TGCCCGATGATATTCGGGTT+GGG - chr1_2:61374568-61374587 Msa0082530:intron 50.0%
GACCCAACCCGAATATCATC+GGG + chr1_2:61374573-61374592 None:intergenic 50.0%
! AAGATTAGGCACGGTTTGGG+GGG - chr1_2:61374971-61374990 Msa0082530:intron 50.0%
AAGTGGAGCCCGCAAAAATG+GGG + chr1_2:61375117-61375136 None:intergenic 50.0%
GAAGTGGAGCCCGCAAAAAT+GGG + chr1_2:61375118-61375137 None:intergenic 50.0%
AGAAGTGGAGCCCGCAAAAA+TGG + chr1_2:61375119-61375138 None:intergenic 50.0%
! GTTGGTGAAAGAGGATTGGG+AGG + chr1_2:61376213-61376232 None:intergenic 50.0%
CCCAATCCTCTTTCACCAAC+TGG - chr1_2:61376213-61376232 Msa0082530:intron 50.0%
!! GTTGGTCCAGTTGGTGAAAG+AGG + chr1_2:61376222-61376241 None:intergenic 50.0%
!! GTATTTGAGGAGGCATTGGG+AGG + chr1_2:61376291-61376310 None:intergenic 50.0%
!!! CGTCATGGTTTTTGGTGTGG+AGG + chr1_2:61376334-61376353 None:intergenic 50.0%
TTTGAGGGGAGGTTTCGTCA+TGG + chr1_2:61376349-61376368 None:intergenic 50.0%
TCCTGCATCATGGGTTTGAG+GGG + chr1_2:61376363-61376382 None:intergenic 50.0%
CTCCTGCATCATGGGTTTGA+GGG + chr1_2:61376364-61376383 None:intergenic 50.0%
GAGAGCGAAAGCAGTTGAGA+CGG - chr1_2:61376712-61376731 Msa0082530:CDS 50.0%
GTTGAGGGAGTTGAGGATTG+AGG - chr1_2:61376835-61376854 Msa0082530:CDS 50.0%
GAAGCACATGGACGACGAGT+TGG + chr1_2:61370015-61370034 None:intergenic 55.0%
AGGCATGCAGACTGTTGCAG+AGG - chr1_2:61371100-61371119 Msa0082530:intron 55.0%
GAAGAGGACGGCAGCTATAG+AGG - chr1_2:61371972-61371991 Msa0082530:intron 55.0%
ATGGCTCACGGGTGCAAATG+AGG - chr1_2:61373422-61373441 Msa0082530:intron 55.0%
GCTTTGGCGGCAAAGAGTGA+TGG + chr1_2:61374296-61374315 None:intergenic 55.0%
CTGCCATTGAGGTTGCACGT+CGG + chr1_2:61374512-61374531 None:intergenic 55.0%
TACGAGTCCACGTGTCCTGA+CGG + chr1_2:61374663-61374682 None:intergenic 55.0%
! AGATTAGGCACGGTTTGGGG+GGG - chr1_2:61374972-61374991 Msa0082530:intron 55.0%
!! GAGGTGGTGGAGGTTGTTTC+CGG + chr1_2:61376272-61376291 None:intergenic 55.0%
!! TTTGAGGAGGCATTGGGAGG+TGG + chr1_2:61376288-61376307 None:intergenic 55.0%
! GGAGGTATGGGACTGTGAAG+AGG + chr1_2:61376316-61376335 None:intergenic 55.0%
TGCATCATGGGTTTGAGGGG+AGG + chr1_2:61376360-61376379 None:intergenic 55.0%
TCCCCTCAAACCCATGATGC+AGG - chr1_2:61376359-61376378 Msa0082530:intron 55.0%
CCTCCTGCATCATGGGTTTG+AGG + chr1_2:61376365-61376384 None:intergenic 55.0%
CCTCAAACCCATGATGCAGG+AGG - chr1_2:61376362-61376381 Msa0082530:intron 55.0%
TGTTCCCTTGCCGCGTAACT+TGG + chr1_2:61376399-61376418 None:intergenic 55.0%
CTCAACTGCTTTCGCTCTCG+TGG + chr1_2:61376711-61376730 None:intergenic 55.0%
AGCGAAAGCAGTTGAGACGG+AGG - chr1_2:61376715-61376734 Msa0082530:CDS 55.0%
! TGAGACGGAGGTTGCTGCTT+CGG - chr1_2:61376727-61376746 Msa0082530:CDS 55.0%
TGTTGCGGAGTTGAGGGCTA+AGG - chr1_2:61376895-61376914 Msa0082530:exon 55.0%
GGAGTTGAGGGCTAAGGTGA+AGG - chr1_2:61376901-61376920 Msa0082530:five_prime_UTR 55.0%
! GCACATGGACGACGAGTTGG+TGG + chr1_2:61370012-61370031 None:intergenic 60.0%
ATGCGGCAATGATGTGGGCC+GGG + chr1_2:61371519-61371538 None:intergenic 60.0%
GATGCGGCAATGATGTGGGC+CGG + chr1_2:61371520-61371539 None:intergenic 60.0%
GCTCACGGGTGCAAATGAGG+TGG - chr1_2:61373425-61373444 Msa0082530:intron 60.0%
TGTAGAGGGTGGGTCTGCCA+TGG + chr1_2:61374388-61374407 None:intergenic 60.0%
! CGGGTTGGGTCTCCAAACGA+CGG - chr1_2:61374582-61374601 Msa0082530:intron 60.0%
GGGTTGGGTCTCCAAACGAC+GGG - chr1_2:61374583-61374602 Msa0082530:intron 60.0%
AGGAAACCCGTCAGGACACG+TGG - chr1_2:61374653-61374672 Msa0082530:intron 60.0%
ACGAGTCCACGTGTCCTGAC+GGG + chr1_2:61374662-61374681 None:intergenic 60.0%
! GATTAGGCACGGTTTGGGGG+GGG - chr1_2:61374973-61374992 Msa0082530:intron 60.0%
! ATTAGGCACGGTTTGGGGGG+GGG - chr1_2:61374974-61374993 Msa0082530:intron 60.0%
!! GTGGTGGTGGTTGGTCCAGT+TGG + chr1_2:61376231-61376250 None:intergenic 60.0%
! GTGGAGGTTGTTTCCGGTGG+TGG + chr1_2:61376266-61376285 None:intergenic 60.0%
! GTGGTGGAGGTTGTTTCCGG+TGG + chr1_2:61376269-61376288 None:intergenic 60.0%
GGGGTCACCTCCTGCATCAT+GGG + chr1_2:61376372-61376391 None:intergenic 60.0%
AGGGGTCACCTCCTGCATCA+TGG + chr1_2:61376373-61376392 None:intergenic 60.0%
TTGCCGCGTAACTTGGCGGA+GGG + chr1_2:61376392-61376411 None:intergenic 60.0%
TCCGCCAAGTTACGCGGCAA+GGG - chr1_2:61376392-61376411 Msa0082530:intron 60.0%
TCCCTTGCCGCGTAACTTGG+CGG + chr1_2:61376396-61376415 None:intergenic 60.0%
TTGGCGCTCAGCTCGTCTTG+CGG + chr1_2:61376422-61376441 None:intergenic 60.0%
! GGAGGTTGCTGCTTCGGTTC+AGG - chr1_2:61376733-61376752 Msa0082530:CDS 60.0%
! TTAGGCACGGTTTGGGGGGG+GGG - chr1_2:61374975-61374994 Msa0082530:intron 65.0%
!! CGCGTGGAAGTGGTGGTGGT+TGG + chr1_2:61376240-61376259 None:intergenic 65.0%
!! GAGGCATTGGGAGGTGGTGG+AGG + chr1_2:61376282-61376301 None:intergenic 65.0%
!! GAGGAGGCATTGGGAGGTGG+TGG + chr1_2:61376285-61376304 None:intergenic 65.0%
GACCCCTCCGCCAAGTTACG+CGG - chr1_2:61376386-61376405 Msa0082530:intron 65.0%
TGCCGCGTAACTTGGCGGAG+GGG + chr1_2:61376391-61376410 None:intergenic 65.0%
CTTGCCGCGTAACTTGGCGG+AGG + chr1_2:61376393-61376412 None:intergenic 65.0%
CTCCGCCAAGTTACGCGGCA+AGG - chr1_2:61376391-61376410 Msa0082530:intron 65.0%
GAGCGCCAACCATGTCCTCG+CGG - chr1_2:61376433-61376452 Msa0082530:intron 65.0%
TCGCTCCGCGAGGACATGGT+TGG + chr1_2:61376441-61376460 None:intergenic 65.0%
TTCGTCGCTCCGCGAGGACA+TGG + chr1_2:61376445-61376464 None:intergenic 65.0%
CTCTTCTTCGTCGCTCCGCG+AGG + chr1_2:61376451-61376470 None:intergenic 65.0%
! TAGGCACGGTTTGGGGGGGG+GGG - chr1_2:61374976-61374995 Msa0082530:intron 70.0%
GCAGCGCGTGGAAGTGGTGG+TGG + chr1_2:61376244-61376263 None:intergenic 70.0%
GTGGCAGCGCGTGGAAGTGG+TGG + chr1_2:61376247-61376266 None:intergenic 70.0%
GTGGTGGCAGCGCGTGGAAG+TGG + chr1_2:61376250-61376269 None:intergenic 70.0%
CTTCCACGCGCTGCCACCAC+CGG - chr1_2:61376250-61376269 Msa0082530:intron 70.0%
! TTTCCGGTGGTGGCAGCGCG+TGG + chr1_2:61376256-61376275 None:intergenic 70.0%
! AGGCACGGTTTGGGGGGGGG+GGG - chr1_2:61374977-61374996 Msa0082530:intron 75.0%
!! GGCACGGTTTGGGGGGGGGG+GGG - chr1_2:61374978-61374997 Msa0082530:intron 80.0%
!! GCACGGTTTGGGGGGGGGGG+GGG - chr1_2:61374979-61374998 Msa0082530:intron 80.0%
!! CACGGTTTGGGGGGGGGGGG+GGG - chr1_2:61374980-61374999 Msa0082530:intron 80.0%
!! ACGGTTTGGGGGGGGGGGGG+GGG - chr1_2:61374981-61375000 Msa0082530:intron 80.0%
!! CGGTTTGGGGGGGGGGGGGG+GGG - chr1_2:61374982-61375001 Msa0082530:intron 85.0%
! GGTTTGGGGGGGGGGGGGGG+GGG - chr1_2:61374983-61375002 Msa0082530:intron 85.0%
! GTTTGGGGGGGGGGGGGGGG+GGG - chr1_2:61374984-61375003 Msa0082530:intron 85.0%
! TTTGGGGGGGGGGGGGGGGG+GGG - chr1_2:61374985-61375004 Msa0082530:intron 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr1_2:61374986-61375005 Msa0082530:intron 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr1_2:61374987-61375006 Msa0082530:intron 95.0%
!! GGGGGGGGGGGGGGGCTGGC+TGG - chr1_2:61374998-61375017 Msa0082530:intron 95.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 61369874 61376946 61369874 ID=Msa0082530;Name=Msa0082530
chr1_2 mRNA 61369874 61376946 61369874 ID=Msa0082530-mRNA-1;Parent=Msa0082530;Name=Msa0082530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=48|0.5|0.4|1|1|0.8|5|0|578
chr1_2 exon 61369874 61370742 61369874 ID=Msa0082530-mRNA-1:exon:20307;Parent=Msa0082530-mRNA-1
chr1_2 exon 61372058 61372577 61372058 ID=Msa0082530-mRNA-1:exon:20306;Parent=Msa0082530-mRNA-1
chr1_2 exon 61372951 61373007 61372951 ID=Msa0082530-mRNA-1:exon:20305;Parent=Msa0082530-mRNA-1
chr1_2 exon 61373338 61373434 61373338 ID=Msa0082530-mRNA-1:exon:20304;Parent=Msa0082530-mRNA-1
chr1_2 exon 61376708 61376946 61376708 ID=Msa0082530-mRNA-1:exon:20303;Parent=Msa0082530-mRNA-1
chr1_2 five_prime_UTR 61376899 61376946 61376899 ID=Msa0082530-mRNA-1:five_prime_utr;Parent=Msa0082530-mRNA-1
chr1_2 CDS 61376708 61376898 61376708 ID=Msa0082530-mRNA-1:cds;Parent=Msa0082530-mRNA-1
chr1_2 CDS 61373338 61373434 61373338 ID=Msa0082530-mRNA-1:cds;Parent=Msa0082530-mRNA-1
chr1_2 CDS 61372951 61373007 61372951 ID=Msa0082530-mRNA-1:cds;Parent=Msa0082530-mRNA-1
chr1_2 CDS 61372058 61372577 61372058 ID=Msa0082530-mRNA-1:cds;Parent=Msa0082530-mRNA-1
chr1_2 CDS 61369874 61370742 61369874 ID=Msa0082530-mRNA-1:cds;Parent=Msa0082530-mRNA-1
Gene Sequence

>Msa0082530

ATGGAGGTTAGTGCAGAGGAAGCATCTCTACAAAGAAGCCAGCAACTAAGAGAACTCTATGAATCATTGTCTGCCGGAGAGACAAATCCACCAACTCGTCGTCCATGTGCTTCCTTGTCACCTGAGGACCTAACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCTTTCTCTTTTCCTCCTGGTGTAGGGTTGCCAGGAAGGGCATACACAAAGAGACAGCATGTATGGCTCACGGGTGCAAATGAGGTGGATAGCAAAACATTTTCAAGAGCTATTCTAGCTAAGACTGTGGTATGCATTCCTGTATTGGATGGCGTCGTTGAGTTTGGCACAACGGATAAGATTCAAGAAGACCTTAATTTCATCAAACACGTGAAGAGCTTCTTCTTAGACCATCACTCTTTGCCGCCAAAGCCAGCACTTTCAGAACACTCAACCTCTAACCCAACTTCCTCAACCGATCACATTCCTACCATCATGTACACCATGGCAGACCCACCCTCTACAAATCCCAATCAAGACGACATGGATGAAGACGAGGAAGACGAAGAAGATGAAGAAGACGATGAAGTCGAATCAGAATCTGAAGACGAAACAGGAGGTCGTTACCGACGTGCAACCTCAATGGCAGCTATTGTAGAGCCAAGTGAGCTGATGCAGATTGAAATGCCCGATGATATTCGGGTTGGGTCTCCAAACGACGGGTCAAATAATTTAGACTCGGATTTTCATTTACTAGTTGTGAGTAATCAAGGAAACCCGTCAGGACACGTGGACTCGTACAAAACCGATTCAACACAAAGATGGGTTCCAATTGAAGAACCTGTGGGTAATTCGCTACAAGTTCAACTACCATCTTCAGTACTTCATCATCAACTAGAAGACTTAACACAAGAAGACACACATTACTCTCAAACAGTATCAACCATCATTCAAAACCAATCAACACAATGGAACATTGATTTTTCACCTTCCATCAACTACATCACTTACTCCTCCCAATCCTCTTTCACCAACTGGACCAACCACCACCACTTCCACGCGCTGCCACCACCGGAAACAACCTCCACCACCTCCCAATGCCTCCTCAAATACATCCTCTTCACAGTCCCATACCTCCACACCAAAAACCATGACGAAACCTCCCCTCAAACCCATGATGCAGGAGGTGACCCCTCCGCCAAGTTACGCGGCAAGGGAACACCGCAAGACGAGCTGAGCGCCAACCATGTCCTCGCGGAGCGACGAAGAAGAGAGAAACTCAACGAGAGGTTCATTATTTTAAGATCATTGGTTCCATTCGTGACGAAAATGGACAAAGCTTCTATATTAGGTGACACTATTGAGTACTTGAAACAGCTAAGAAGAAAGATACAAGATCTTGAAACACGTAACCGTCAGATAGAGACTGAACAACAAAGTAGAAGTGGTGTAACGGTTTTGGTGGGTCCAACAGAGAAGAAAAAGGTGAGGATTGTTGAAGAATGTGGAGCCACGAGAGCGAAAGCAGTTGAGACGGAGGTTGCTGCTTCGGTTCAGGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATTGAGTGTTTGCATAGAGAAGGATTGTTGCTTGATGTTATGGTAATGTTGAGGGAGTTGAGGATTGAGGTTATTGGAGTTCAGTCTTCGCTCAATAATGGTGTTTTTGTTGCGGAGTTGAGGGCTAAGGTGAAGGAAAATGGTGGAAATGGGAAGAAA
Protein sequence

>Msa0082530

MEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGRAYTKRQHVWLTGANEVDSKTFSRAILAKTVVCIPVLDGVVEFGTTDKIQEDLNFIKHVKSFFLDHHSLPPKPALSEHSTSNPTSSTDHIPTIMYTMADPPSTNPNQDDMDEDEEDEEDEEDDEVESESEDETGGRYRRATSMAAIVEPSELMQIEMPDDIRVGSPNDGSNNLDSDFHLLVVSNQGNPSGHVDSYKTDSTQRWVPIEEPVGNSLQVQLPSSVLHHQLEDLTQEDTHYSQTVSTIIQNQSTQWNIDFSPSINYITYSSQSSFTNWTNHHHFHALPPPETTSTTSQCLLKYILFTVPYLHTKNHDETSPQTHDAGGDPSAKLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIETEQQSRSGVTVLVGPTEKKKVRIVEECGATRAKAVETEVAASVQVSIIESDALLEIECLHREGLLLDVMVMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGGNGKK