AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0029750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029750 MtrunA17_Chr1g0186561 96.359 357 13 0 1 357 1 357 0.0 702
Msa0029750 MtrunA17_Chr1g0186601 86.842 342 44 1 1 342 1 341 0.0 613
Msa0029750 MtrunA17_Chr1g0186571 79.552 357 69 2 1 357 1 353 0.0 585
Msa0029750 MtrunA17_Chr1g0186611 79.487 351 71 1 1 351 1 350 0.0 579
Msa0029750 MtrunA17_Chr1g0186641 81.214 346 61 2 1 346 1 342 0.0 575
Msa0029750 MtrunA17_Chr1g0171301 75.140 358 85 2 1 357 1 355 0.0 547
Msa0029750 MtrunA17_Chr1g0184221 52.890 346 143 4 11 342 11 350 5.52e-128 371
Msa0029750 MtrunA17_Chr7g0255561 44.277 332 175 4 12 336 10 338 1.36e-93 285
Msa0029750 MtrunA17_Chr7g0255581 44.277 332 175 4 12 336 10 338 1.36e-93 285
Msa0029750 MtrunA17_Chr7g0263101 44.545 330 174 5 12 336 9 334 3.15e-92 280
Msa0029750 MtrunA17_Chr1g0182291 42.547 322 184 1 13 334 12 332 2.07e-90 275
Msa0029750 MtrunA17_Chr1g0160171 43.505 331 169 3 13 334 13 334 7.52e-89 272
Msa0029750 MtrunA17_Chr3g0114691 38.372 344 200 3 13 349 17 355 9.14e-85 262
Msa0029750 MtrunA17_Chr1g0160181 40.854 328 191 1 12 336 14 341 1.30e-84 261
Msa0029750 MtrunA17_Chr3g0114731 40.356 337 196 4 16 351 18 350 2.85e-83 258
Msa0029750 MtrunA17_Chr3g0081421 42.202 327 178 5 16 334 17 340 7.34e-82 254
Msa0029750 MtrunA17_Chr3g0081511 39.886 351 201 4 12 353 13 362 8.70e-81 251
Msa0029750 MtrunA17_Chr3g0142131 39.941 338 188 3 13 336 17 353 4.73e-80 249
Msa0029750 MtrunA17_Chr8g0354121 39.276 359 195 8 12 354 9 360 1.13e-79 249
Msa0029750 MtrunA17_Chr3g0114711 34.530 362 201 3 16 341 14 375 2.39e-76 240
Msa0029750 MtrunA17_Chr6g0483401 39.877 326 176 5 25 338 19 336 1.35e-75 237
Msa0029750 MtrunA17_Chr1g0155761 36.494 348 191 5 13 336 18 359 1.69e-75 238
Msa0029750 MtrunA17_Chr3g0114701 39.077 325 195 1 13 334 6 330 2.05e-72 230
Msa0029750 MtrunA17_Chr6g0463971 37.037 351 205 7 1 340 1 346 1.02e-70 224
Msa0029750 MtrunA17_Chr8g0334761 38.462 338 200 4 15 345 9 345 1.62e-69 222
Msa0029750 MtrunA17_Chr2g0278541 38.485 330 191 6 15 334 11 338 6.62e-68 218
Msa0029750 MtrunA17_Chr2g0290611 38.416 341 202 7 10 345 6 343 9.20e-68 217
Msa0029750 MtrunA17_Chr3g0129601 35.562 329 207 2 11 335 24 351 1.43e-66 214
Msa0029750 MtrunA17_Chr1g0164831 33.913 345 218 6 15 357 2 338 2.05e-65 210
Msa0029750 MtrunA17_Chr2g0278551 35.277 343 212 7 11 346 7 346 2.37e-63 207
Msa0029750 MtrunA17_Chr2g0278561 34.412 340 212 4 10 343 9 343 2.96e-63 206
Msa0029750 MtrunA17_Chr8g0334771 37.322 351 211 6 15 357 9 358 9.67e-63 204
Msa0029750 MtrunA17_Chr2g0332001 35.061 328 207 3 7 331 29 353 4.11e-62 203
Msa0029750 MtrunA17_Chr2g0284261 33.540 322 212 2 13 334 5 324 5.44e-62 202
Msa0029750 MtrunA17_Chr3g0126101 35.312 320 204 3 17 336 7 323 1.48e-61 201
Msa0029750 MtrunA17_Chr4g0050891 33.639 327 202 5 13 329 10 331 1.58e-61 201
Msa0029750 MtrunA17_Chr4g0059311 33.623 345 220 6 15 356 13 351 3.24e-61 200
Msa0029750 MtrunA17_Chr2g0310441 34.431 334 215 3 15 346 9 340 3.36e-61 200
Msa0029750 MtrunA17_Chr8g0383731 35.455 330 205 3 13 335 2 330 2.36e-59 195
Msa0029750 MtrunA17_Chr1g0177221 36.000 250 160 0 13 262 15 264 5.98e-59 191
Msa0029750 MtrunA17_Chr7g0271561 33.333 330 209 4 17 338 8 334 7.91e-58 192
Msa0029750 MtrunA17_Chr3g0129571 34.756 328 206 4 14 334 5 331 2.03e-57 190
Msa0029750 MtrunA17_Chr4g0050881 34.808 339 203 8 13 340 6 337 1.06e-56 188
Msa0029750 MtrunA17_Chr4g0073241 33.626 342 213 6 17 351 9 343 1.06e-56 189
Msa0029750 MtrunA17_Chr4g0050941 34.943 352 206 8 13 346 9 355 2.43e-56 188
Msa0029750 MtrunA17_Chr8g0334751 34.188 351 213 5 15 356 10 351 3.04e-55 184
Msa0029750 MtrunA17_Chr3g0129591 33.537 328 210 4 14 334 3 329 5.99e-54 181
Msa0029750 MtrunA17_Chr5g0413961 33.025 324 210 4 15 338 16 332 1.17e-53 180
Msa0029750 MtrunA17_Chr4g0051021 31.686 344 224 5 16 355 14 350 2.63e-53 180
Msa0029750 MtrunA17_Chr1g0160111 30.745 322 211 4 25 338 16 333 8.18e-53 179
Msa0029750 MtrunA17_Chr5g0408001 31.765 340 214 5 13 336 7 344 1.70e-47 165
Msa0029750 MtrunA17_Chr5g0407991 31.858 339 211 5 15 336 8 343 4.24e-47 164
Msa0029750 MtrunA17_Chr5g0407971 31.965 341 212 6 13 336 8 345 4.55e-47 164
Msa0029750 MtrunA17_Chr1g0150151 33.828 337 210 7 10 338 5 336 5.40e-47 163
Msa0029750 MtrunA17_Chr4g0050931 31.471 340 181 7 13 343 9 305 7.71e-47 161
Msa0029750 MtrunA17_Chr5g0408031 30.836 347 220 5 13 341 7 351 2.46e-46 162
Msa0029750 MtrunA17_Chr3g0126091 31.098 328 220 4 14 336 9 335 1.10e-45 159
Msa0029750 MtrunA17_Chr5g0408041 30.321 343 219 6 16 340 11 351 1.45e-44 157
Msa0029750 MtrunA17_Chr3g0129581 33.232 328 211 4 14 334 3 329 1.55e-44 156
Msa0029750 MtrunA17_Chr5g0428881 27.976 336 237 3 3 334 5 339 3.78e-44 156
Msa0029750 MtrunA17_Chr6g0451171 32.857 350 224 7 12 357 8 350 6.89e-44 155
Msa0029750 MtrunA17_Chr5g0413941 30.719 306 202 5 36 336 27 327 9.26e-44 154
Msa0029750 MtrunA17_Chr5g0413921 29.524 315 206 6 36 342 27 333 1.36e-42 151
Msa0029750 MtrunA17_Chr5g0413931 31.935 310 203 5 36 339 26 333 2.98e-42 150
Msa0029750 MtrunA17_Chr7g0227921 30.000 330 228 3 10 338 5 332 8.16e-42 149
Msa0029750 MtrunA17_Chr6g0451211 33.030 330 209 7 12 335 8 331 9.16e-42 149
Msa0029750 MtrunA17_Chr5g0441761 26.994 326 233 2 21 346 19 339 3.24e-41 147
Msa0029750 MtrunA17_Chr4g0051001 30.820 305 204 3 13 312 28 330 3.43e-40 144
Msa0029750 MtrunA17_Chr5g0404811 37.674 215 128 3 126 336 3 215 1.23e-39 140
Msa0029750 MtrunA17_Chr5g0413951 29.193 322 216 6 21 336 12 327 2.15e-39 142
Msa0029750 MtrunA17_Chr6g0451201 31.902 326 213 6 12 335 8 326 2.38e-38 140
Msa0029750 MtrunA17_Chr8g0369841 28.994 338 222 5 15 336 8 343 4.91e-38 140
Msa0029750 MtrunA17_Chr3g0084091 29.545 264 165 3 91 343 5 258 3.69e-36 133
Msa0029750 MtrunA17_Chr6g0451251 33.667 300 187 8 41 335 37 329 1.21e-35 133
Msa0029750 MtrunA17_Chr6g0451261 30.503 318 213 7 12 325 7 320 1.14e-34 135
Msa0029750 MtrunA17_Chr1g0211801 30.233 258 171 4 9 262 4 256 2.85e-34 127
Msa0029750 MtrunA17_Chr5g0429001 27.839 273 190 2 68 334 3 274 2.06e-31 120
Msa0029750 MtrunA17_Chr5g0399281 29.129 333 209 8 26 340 14 337 6.07e-30 117
Msa0029750 MtrunA17_Chr6g0451191 34.222 225 138 5 130 350 1 219 2.36e-29 113
Msa0029750 MtrunA17_Chr2g0278021 33.333 213 133 3 130 334 1 212 9.05e-29 112
Msa0029750 MtrunA17_Chr4g0056081 27.187 320 214 7 42 349 40 352 2.00e-28 113
Msa0029750 MtrunA17_Chr1g0172881 36.552 145 79 4 122 261 12 148 3.08e-25 99.8
Msa0029750 MtrunA17_Chr8g0334721 43.697 119 65 2 225 343 1 117 8.49e-25 99.0
Msa0029750 MtrunA17_Chr8g0334711 33.673 196 127 3 15 208 9 203 2.95e-23 96.3
Msa0029750 MtrunA17_Chr1g0182261 34.591 159 95 3 200 356 74 225 3.35e-22 93.6
Msa0029750 MtrunA17_Chr1g0211811 47.368 76 38 1 264 337 1 76 2.41e-18 79.0
Msa0029750 MtrunA17_Chr5g0404801 34.454 119 78 0 11 129 2 120 3.29e-17 77.0
Msa0029750 MtrunA17_Chr4g0050921 37.864 103 63 1 213 315 3 104 6.32e-17 76.6
Msa0029750 MtrunA17_Chr2g0278031 34.483 116 76 0 13 128 11 126 1.36e-16 75.5
Msa0029750 MtrunA17_Chr8g0334731 35.135 148 92 3 65 208 40 187 1.91e-16 77.0
Msa0029750 MtrunA17_Chr1g0177231 46.753 77 41 0 260 336 26 102 3.12e-15 71.6
Msa0029750 MtrunA17_Chr1g0172891 42.857 77 44 0 272 348 16 92 2.58e-14 68.6
Msa0029750 MtrunA17_Chr4g0050911 28.244 131 80 3 92 210 7 135 7.83e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0029750 AT5G07050.1 43.373 332 176 4 16 337 17 346 4.94e-89 273
Msa0029750 AT2G39510.1 40.299 335 199 1 13 346 4 338 4.56e-87 267
Msa0029750 AT2G37460.1 40.062 322 192 1 13 334 11 331 1.36e-86 266
Msa0029750 AT4G08300.1 38.757 338 202 3 13 346 7 343 1.78e-82 256
Msa0029750 AT1G44800.1 40.237 338 196 4 13 346 7 342 2.28e-81 253
Msa0029750 AT2G40900.1 37.805 328 199 2 9 336 3 325 5.32e-80 250
Msa0029750 AT1G75500.1 37.151 358 209 4 11 357 14 366 2.17e-79 248
Msa0029750 AT1G75500.2 37.151 358 209 4 11 357 14 366 2.17e-79 248
Msa0029750 AT3G18200.2 38.235 340 206 3 2 340 20 356 1.32e-76 241
Msa0029750 AT5G13670.1 37.048 332 196 4 12 335 3 329 3.93e-76 239
Msa0029750 AT1G21890.1 36.119 335 203 2 13 337 7 340 1.95e-75 238
Msa0029750 AT4G08290.1 37.500 328 201 3 14 338 10 336 5.65e-75 237
Msa0029750 AT3G56620.1 38.650 326 194 3 9 333 3 323 1.53e-74 235
Msa0029750 AT2G37450.2 37.654 324 180 2 13 336 5 306 4.15e-70 223
Msa0029750 AT1G43650.1 36.615 325 203 2 14 338 4 325 3.93e-69 220
Msa0029750 AT4G30420.2 35.393 356 208 5 13 352 5 354 6.31e-67 216
Msa0029750 AT1G21890.2 35.161 310 190 2 13 312 7 315 8.78e-65 209
Msa0029750 AT4G30420.1 35.143 350 205 5 19 352 1 344 3.57e-64 208
Msa0029750 AT5G64700.1 34.211 342 216 3 16 349 7 347 1.17e-63 207
Msa0029750 AT3G30340.1 34.146 328 213 2 13 338 7 333 8.51e-63 204
Msa0029750 AT3G53210.1 34.848 330 198 5 16 336 9 330 1.46e-62 204
Msa0029750 AT1G09380.1 32.308 325 214 2 13 332 4 327 1.74e-60 199
Msa0029750 AT2G37450.3 40.426 235 139 1 102 336 1 234 5.48e-55 181
Msa0029750 AT3G18200.1 40.870 230 130 4 113 340 1 226 5.21e-53 176
Msa0029750 AT4G01440.1 29.154 319 224 2 14 331 7 324 1.18e-51 176
Msa0029750 AT1G11450.3 29.825 342 238 2 11 351 10 350 8.38e-49 168
Msa0029750 AT5G40210.1 31.579 304 190 5 36 338 32 318 5.93e-48 165
Msa0029750 AT1G68170.2 30.422 332 224 4 10 336 6 335 1.35e-47 165
Msa0029750 AT1G01070.1 29.885 348 230 6 9 349 8 348 2.04e-47 164
Msa0029750 AT4G08290.2 34.661 251 160 3 14 261 10 259 1.92e-46 160
Msa0029750 AT1G68170.1 30.841 321 215 4 21 336 7 325 6.88e-46 160
Msa0029750 AT1G11450.5 31.457 302 205 2 51 351 6 306 1.74e-45 158
Msa0029750 AT2G37450.1 39.904 208 124 1 129 336 61 267 9.21e-45 155
Msa0029750 AT4G01440.3 27.667 300 215 2 14 312 7 305 1.77e-44 155
Msa0029750 AT3G53210.2 34.118 255 151 5 91 336 27 273 6.02e-44 154
Msa0029750 AT1G11450.2 31.208 298 203 2 55 351 3 299 6.98e-44 154
Msa0029750 AT1G70260.1 27.119 354 226 4 13 346 8 349 8.40e-44 155
Msa0029750 AT3G28050.1 30.814 344 220 10 19 356 17 348 1.39e-43 154
Msa0029750 AT4G01430.1 27.920 351 244 7 13 356 5 353 2.55e-43 154
Msa0029750 AT1G11460.1 29.394 330 230 3 9 336 8 336 3.56e-43 152
Msa0029750 AT4G28040.1 27.193 342 235 5 13 351 4 334 1.25e-42 152
Msa0029750 AT4G28040.5 27.193 342 235 5 13 351 4 334 1.25e-42 152
Msa0029750 AT4G28040.3 27.193 342 235 5 13 351 4 334 1.25e-42 152
Msa0029750 AT4G28040.4 27.193 342 235 5 13 351 4 334 1.25e-42 152
Msa0029750 AT4G28040.2 27.193 342 235 5 13 351 4 334 1.25e-42 152
Msa0029750 AT1G43650.2 33.871 248 161 2 14 261 4 248 1.28e-42 149
Msa0029750 AT1G25270.1 29.448 326 224 3 15 336 1 324 2.40e-42 151
Msa0029750 AT5G64700.2 33.071 254 161 3 16 261 7 259 2.18e-41 146
Msa0029750 AT5G40230.1 31.579 304 199 6 41 338 45 345 1.15e-40 147
Msa0029750 AT1G60050.1 27.429 350 236 6 17 351 13 359 2.15e-40 146
Msa0029750 AT3G28130.2 29.755 326 217 6 21 339 17 337 3.10e-40 145
Msa0029750 AT3G53210.3 32.411 253 153 4 16 263 9 248 7.11e-40 142
Msa0029750 AT5G40240.1 29.605 304 205 5 41 338 44 344 5.71e-39 142
Msa0029750 AT5G40240.3 29.605 304 205 5 41 338 44 344 5.71e-39 142
Msa0029750 AT5G40240.2 29.605 304 205 5 41 338 58 358 9.37e-39 142
Msa0029750 AT5G45370.2 28.358 335 222 5 18 336 21 353 1.90e-38 141
Msa0029750 AT5G45370.4 28.358 335 222 5 18 336 21 353 1.90e-38 141
Msa0029750 AT5G45370.1 28.483 323 213 4 18 336 21 329 1.95e-38 140
Msa0029750 AT3G28130.5 32.245 245 160 3 99 339 9 251 1.48e-37 136
Msa0029750 AT3G28130.1 32.245 245 160 3 99 339 9 251 1.48e-37 136
Msa0029750 AT1G01070.2 30.952 294 189 6 63 349 15 301 3.05e-37 136
Msa0029750 AT1G11450.4 28.713 303 214 2 11 312 10 311 3.05e-37 136
Msa0029750 AT3G28100.1 29.114 316 213 7 26 336 26 335 1.13e-36 136
Msa0029750 AT4G24980.1 28.146 302 151 6 34 335 4 239 4.82e-36 132
Msa0029750 AT4G01440.5 30.841 214 146 2 119 331 4 216 9.47e-36 131
Msa0029750 AT4G01440.2 30.841 214 146 2 119 331 4 216 9.47e-36 131
Msa0029750 AT3G28070.2 30.677 251 168 4 99 344 7 256 5.53e-35 129
Msa0029750 AT4G15540.1 28.824 340 224 6 1 336 1 326 5.65e-35 131
Msa0029750 AT4G15540.2 28.824 340 224 6 1 336 1 326 5.65e-35 131
Msa0029750 AT3G30340.2 30.556 252 172 2 13 262 7 257 8.58e-35 129
Msa0029750 AT3G28070.1 30.677 251 168 4 99 344 99 348 4.63e-34 129
Msa0029750 AT3G28080.1 28.819 288 194 7 65 344 62 346 8.43e-34 128
Msa0029750 AT3G28080.5 29.200 250 168 5 102 344 10 257 9.76e-34 126
Msa0029750 AT3G28080.7 29.200 250 168 5 102 344 10 257 9.76e-34 126
Msa0029750 AT3G28080.8 29.200 250 168 5 102 344 10 257 9.76e-34 126
Msa0029750 AT3G28080.6 29.200 250 168 5 102 344 10 257 9.76e-34 126
Msa0029750 AT4G01430.2 26.885 305 217 5 13 312 5 308 1.86e-33 126
Msa0029750 AT1G11450.1 30.588 255 175 2 98 351 5 258 2.17e-33 125
Msa0029750 AT3G28080.2 29.200 250 168 5 102 344 91 338 5.11e-33 126
Msa0029750 AT3G45870.1 28.916 332 216 6 13 329 8 334 8.32e-32 123
Msa0029750 AT4G01450.2 27.864 323 221 3 14 332 7 321 1.50e-31 122
Msa0029750 AT4G19185.1 27.515 338 221 6 18 336 22 354 1.67e-31 123
Msa0029750 AT4G01440.4 27.344 256 172 4 14 262 7 255 1.03e-30 118
Msa0029750 AT4G01450.1 26.733 303 210 3 14 312 7 301 1.19e-30 119
Msa0029750 AT5G47470.2 27.723 303 206 5 42 338 83 378 1.38e-29 117
Msa0029750 AT5G47470.1 27.723 303 206 5 42 338 55 350 1.45e-29 117
Msa0029750 AT5G47470.3 27.723 303 206 5 42 338 83 378 1.57e-29 117
Msa0029750 AT3G28130.3 31.776 214 140 3 130 339 1 212 2.31e-29 113
Msa0029750 AT3G28070.5 30.455 220 147 4 130 344 1 219 5.78e-27 107
Msa0029750 AT3G45870.8 27.937 315 207 6 13 312 8 317 2.74e-26 107
Msa0029750 AT3G28070.3 30.841 214 144 3 102 312 102 314 3.84e-26 107
Msa0029750 AT3G28080.9 28.378 222 150 5 130 344 1 220 1.23e-25 103
Msa0029750 AT4G01450.4 27.801 241 162 3 14 250 7 239 9.58e-25 101
Msa0029750 AT5G45370.6 27.888 251 163 5 102 336 3 251 8.69e-24 99.8
Msa0029750 AT5G45370.5 27.888 251 163 5 102 336 3 251 8.69e-24 99.8
Msa0029750 AT4G19185.2 27.413 259 164 6 97 336 23 276 1.02e-23 100
Msa0029750 AT4G16620.1 25.915 328 220 6 24 338 19 336 2.68e-23 99.8
Msa0029750 AT4G01450.3 27.928 222 149 2 14 231 7 221 5.92e-23 96.7
Msa0029750 AT3G28100.3 29.583 240 159 6 26 260 26 260 1.40e-20 90.5
Msa0029750 AT4G01430.3 28.899 218 147 6 145 356 1 216 1.76e-20 89.4
Msa0029750 AT3G28130.4 28.112 249 168 5 21 262 17 261 5.56e-20 88.6
Msa0029750 AT3G45870.9 28.821 229 151 3 13 229 8 236 1.10e-17 82.4
Msa0029750 AT3G45870.5 29.279 222 137 6 123 329 43 259 2.21e-17 82.0
Msa0029750 AT5G45370.3 26.577 222 145 5 131 336 74 293 7.51e-17 80.9
Msa0029750 AT4G16620.4 26.877 253 155 6 102 338 1 239 4.89e-16 77.4
Msa0029750 AT4G16620.2 26.877 253 155 6 102 338 1 239 4.89e-16 77.4
Msa0029750 AT3G45870.2 30.769 143 91 3 190 329 46 183 1.89e-14 72.4
Msa0029750 AT3G28060.1 32.432 111 74 1 202 312 45 154 1.78e-13 67.8
Msa0029750 AT3G28100.2 32.374 139 89 3 26 163 26 160 1.23e-12 67.4
Msa0029750 AT3G45870.6 27.805 205 128 6 123 312 43 242 2.52e-12 66.6
Msa0029750 AT3G45870.7 27.805 205 128 6 123 312 43 242 2.52e-12 66.6
Msa0029750 AT3G28130.6 28.767 146 98 3 21 163 17 159 1.24e-11 63.9

Find 88 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACATGGATGTGCTTTAT+TGG 0.204661 1_1:+55166076 Msa0029750:CDS
GACTTGTGGTCCATAATATA+TGG 0.217089 1_1:+55166175 Msa0029750:CDS
TGTTGATCTACATTCAATTA+TGG 0.230717 1_1:+55166313 Msa0029750:CDS
ATATTTGTGCTTTCTTTGTT+AGG 0.235092 1_1:+55165201 Msa0029750:CDS
TAACTTTAGTTGGAAATTAA+AGG 0.242618 1_1:+55166749 Msa0029750:three_prime_UTR
TAGCATTGCTCTTGTCTAAA+TGG 0.261140 1_1:-55166952 None:intergenic
TATCAACGAGAGTGGATTAA+AGG 0.268996 1_1:+55165877 Msa0029750:CDS
TGGGATTTGTAGGTTTATTC+TGG 0.273990 1_1:+55166819 Msa0029750:three_prime_UTR
AAACCTAACCCCATATATTA+TGG 0.288350 1_1:-55166185 None:intergenic
TTCAGAGATAAAATATAAAA+AGG 0.306735 1_1:-55164399 None:intergenic
TCGTAATTCTTTAGCATCAT+AGG 0.313102 1_1:+55166589 Msa0029750:intron
CCACATAGGTTATAAAATTC+TGG 0.321381 1_1:-55166929 None:intergenic
ATTTCAAGACCAAAGTTAAA+AGG 0.321589 1_1:+55166677 Msa0029750:CDS
CCCTCTTTGTACTATATTTG+TGG 0.328346 1_1:+55166377 Msa0029750:CDS
AACCCTTCAGCATGGATTAT+AGG 0.328579 1_1:+55166142 Msa0029750:CDS
AAACATCATCACTAAACTTA+TGG 0.354829 1_1:+55164295 Msa0029750:exon
GAATAAAATTTGCACATCAA+TGG 0.367395 1_1:+55166799 Msa0029750:three_prime_UTR
ATATAGCATGTAACTTTAGT+TGG 0.372611 1_1:+55166739 Msa0029750:three_prime_UTR
TGCCACAAGTTTCTCATAAC+AGG 0.377701 1_1:-55165818 None:intergenic
TGCACATCAATGGGATTTGT+AGG 0.379576 1_1:+55166809 Msa0029750:three_prime_UTR
AATAAAATTTGCACATCAAT+GGG 0.381793 1_1:+55166800 Msa0029750:three_prime_UTR
GATATATCCTCTATCGTATT+GGG 0.386467 1_1:+55164208 None:intergenic
CGATATATCCTCTATCGTAT+TGG 0.389164 1_1:+55164207 None:intergenic
AGGTGCATTTATTGTGATCA+TGG 0.389621 1_1:+55166609 Msa0029750:CDS
ACTTGTGGTCCATAATATAT+GGG 0.400807 1_1:+55166176 Msa0029750:CDS
GGTTGAATAATATGGATTAG+AGG 0.401678 1_1:-55165842 None:intergenic
TATTAATGACAGGGAATTGT+TGG 0.403386 1_1:+55166282 Msa0029750:intron
GGGTTTGTATCTGTTGCTGT+GGG 0.425250 1_1:+55166630 Msa0029750:CDS
TATTTGTGCTTTCTTTGTTA+GGG 0.426849 1_1:+55165202 Msa0029750:CDS
ACCTATCGGCATGTTCTCGC+CGG 0.429528 1_1:+55164461 Msa0029750:CDS
CCTATCGGCATGTTCTCGCC+GGG 0.430648 1_1:+55164462 Msa0029750:CDS
TTCTATATGGTACATTATGC+AGG 0.432883 1_1:+55165934 Msa0029750:CDS
CTCAATTATCACTCACTACA+TGG 0.439857 1_1:+55166062 Msa0029750:CDS
ATCAACGAGAGTGGATTAAA+GGG 0.446252 1_1:+55165878 Msa0029750:CDS
AAAAGAACAAGTGTCAGCTT+TGG 0.474816 1_1:-55165171 None:intergenic
CTTTAGACAAATCAGTTACA+TGG 0.475563 1_1:+55167166 Msa0029750:intron
TCTGAATCTTCCTTCAATCA+TGG 0.477623 1_1:+55164416 Msa0029750:CDS
TGGGTTTGTATCTGTTGCTG+TGG 0.482889 1_1:+55166629 Msa0029750:CDS
GTTCAAGCCACACCTTATCA+TGG 0.485715 1_1:+55164355 Msa0029750:CDS
GGGACCTTGATATCCTTAGC+TGG 0.486715 1_1:+55165767 Msa0029750:CDS
CTCTCAAGAAAGTATGCAAA+AGG 0.494726 1_1:-55164497 None:intergenic
AACACCAGCTAAGGATATCA+AGG 0.497528 1_1:-55165771 None:intergenic
GTTTGTATCTGTTGCTGTGG+GGG 0.500052 1_1:+55166632 Msa0029750:CDS
AACATGGAAGCAAGAAATGT+TGG 0.500297 1_1:-55165354 None:intergenic
GTAGTGAGTGATAATTGAGC+AGG 0.509226 1_1:-55166058 None:intergenic
CTTATGTTTATGTTACCTAT+CGG 0.512879 1_1:+55164447 Msa0029750:CDS
GGTGCATTTATTGTGATCAT+GGG 0.513185 1_1:+55166610 Msa0029750:CDS
TTGGAAATTAAAGGTAGTAG+AGG 0.515463 1_1:+55166758 Msa0029750:three_prime_UTR
TGACAGGGAATTGTTGGTGG+TGG 0.516639 1_1:+55166288 Msa0029750:intron
ATACTAGCATACTTCGTCCT+TGG 0.517108 1_1:+55166402 Msa0029750:CDS
TTGACTTGAATGCAGGATTG+AGG 0.518118 1_1:+55165703 Msa0029750:intron
TTTCACCATGACACTATACA+AGG 0.524518 1_1:+55165793 Msa0029750:CDS
TCTTGTCTAAATGGCCACAT+AGG 0.534906 1_1:-55166943 None:intergenic
ACTAGAACCCAATACGATAG+AGG 0.535019 1_1:-55164215 None:intergenic
TCATTATTGCAGTGGCACTC+AGG 0.535841 1_1:+55165400 Msa0029750:CDS
ATATAAGAAATTCGAATCGA+TGG 0.540403 1_1:-55167246 None:intergenic
CTTGGGCTAAAACCATGATA+AGG 0.551206 1_1:-55164367 None:intergenic
CACTGCAATAATGAAGGTAA+TGG 0.555306 1_1:-55165391 None:intergenic
AACTCTTTGTATACATGTAG+AGG 0.556101 1_1:-55164335 None:intergenic
AGTCCTATAATCCATGCTGA+AGG 0.557310 1_1:-55166145 None:intergenic
CATTACCTTCATTATTGCAG+TGG 0.559816 1_1:+55165392 Msa0029750:CDS
AGTTCTTCTATCAACGAGAG+TGG 0.559959 1_1:+55165869 Msa0029750:CDS
CGATAGGTAACATAAACATA+AGG 0.561067 1_1:-55164446 None:intergenic
TTATATATATAGTGGGAATG+TGG 0.561311 1_1:+55164246 Msa0029750:five_prime_UTR
CATGGTGAAAACACCAGCTA+AGG 0.566514 1_1:-55165780 None:intergenic
GAGTGCCACTGCAATAATGA+AGG 0.571106 1_1:-55165397 None:intergenic
AGGACTCATTCCATGATTGA+AGG 0.576140 1_1:-55164426 None:intergenic
GGTTTGTATCTGTTGCTGTG+GGG 0.597926 1_1:+55166631 Msa0029750:CDS
TAATGACAGGGAATTGTTGG+TGG 0.600813 1_1:+55166285 Msa0029750:intron
GCCACAAATATAGTACAAAG+AGG 0.605176 1_1:-55166378 None:intergenic
AGGTCCCTTGTATAGTGTCA+TGG 0.606603 1_1:-55165798 None:intergenic
CCACAAATATAGTACAAAGA+GGG 0.611746 1_1:-55166377 None:intergenic
GTCCTATAATCCATGCTGAA+GGG 0.614393 1_1:-55166144 None:intergenic
AACATAATAACCCTTCAGCA+TGG 0.615122 1_1:+55166134 Msa0029750:CDS
CTTGTGGTCCATAATATATG+GGG 0.619780 1_1:+55166177 Msa0029750:CDS
GGGGAAAGAAGGTGACAAAG+AGG 0.625341 1_1:+55166651 Msa0029750:CDS
GGAAGCTATAGTGTTGAACA+TGG 0.625781 1_1:-55165370 None:intergenic
TAGGACTCAACATTGACTTG+TGG 0.640232 1_1:+55166161 Msa0029750:CDS
CCCGGCGAGAACATGCCGAT+AGG 0.651355 1_1:-55164462 None:intergenic
TAGTGAGTGATAATTGAGCA+GGG 0.654187 1_1:-55166057 None:intergenic
AAAATATGGCAGGATCACCA+TGG 0.660749 1_1:+55165293 Msa0029750:intron
CTATCGGCATGTTCTCGCCG+GGG 0.671878 1_1:+55164463 Msa0029750:CDS
GCTAAAACCATGATAAGGTG+TGG 0.672505 1_1:-55164362 None:intergenic
AAAAGGAAACATCACAACCC+CGG 0.676563 1_1:-55164480 None:intergenic
TTCACCATGACACTATACAA+GGG 0.685500 1_1:+55165794 Msa0029750:CDS
AAAGTACAAATTGAGTGCCA+TGG 0.689345 1_1:-55165310 None:intergenic
AATGTACCATATAGAAAACG+TGG 0.726303 1_1:-55165927 None:intergenic
GACCTGTTATGAGAAACTTG+TGG 0.744585 1_1:+55165816 Msa0029750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAAAATAGAAATTTTATA+AGG - chr1_1:55165470-55165489 None:intergenic 10.0%
!!! AAATTTCTATTTTTTGTTTT+TGG + chr1_1:55165474-55165493 Msa0029750:intron 10.0%
!! TAATGTTAGAAATTTATATT+TGG - chr1_1:55166246-55166265 None:intergenic 10.0%
!!! ACTTTTTCTTATATATATAG+TGG + chr1_1:55164238-55164257 Msa0029750:five_prime_UTR 15.0%
!!! CTTTTTCTTATATATATAGT+GGG + chr1_1:55164239-55164258 Msa0029750:five_prime_UTR 15.0%
!! TTCAGAGATAAAATATAAAA+AGG - chr1_1:55164402-55164421 None:intergenic 15.0%
!!! ATGTTTTTAGTTTTGTAATT+TGG - chr1_1:55165525-55165544 None:intergenic 15.0%
!!! AAAATTTAACCTATTGATTT+CGG + chr1_1:55165645-55165664 Msa0029750:intron 15.0%
!!! CAAATTTTATTCTAAATACT+TGG - chr1_1:55166791-55166810 None:intergenic 15.0%
!! ATGTATGTTATTACATTGTA+TGG + chr1_1:55165241-55165260 Msa0029750:intron 20.0%
!!! GTATAATTTTAAAATATGGC+AGG + chr1_1:55165283-55165302 Msa0029750:intron 20.0%
!!! TTTTAGTTTTGTAATTTGGA+AGG - chr1_1:55165521-55165540 None:intergenic 20.0%
!!! AACTTTTTGGTTGAATAATA+TGG - chr1_1:55165853-55165872 None:intergenic 20.0%
!! TAAAAACTAGTTATGAGTTA+AGG - chr1_1:55165966-55165985 None:intergenic 20.0%
!! AACTCTAATATCTTTGTAAT+TGG + chr1_1:55166006-55166025 Msa0029750:intron 20.0%
!! AATCATTCAATATTAATGAC+AGG + chr1_1:55166272-55166291 Msa0029750:intron 20.0%
!! ATCATTCAATATTAATGACA+GGG + chr1_1:55166273-55166292 Msa0029750:intron 20.0%
!! TAACTTTAGTTGGAAATTAA+AGG + chr1_1:55166749-55166768 Msa0029750:three_prime_UTR 20.0%
!! AATAAAATTTGCACATCAAT+GGG + chr1_1:55166800-55166819 Msa0029750:three_prime_UTR 20.0%
!! TTATATATATAGTGGGAATG+TGG + chr1_1:55164246-55164265 Msa0029750:five_prime_UTR 25.0%
! AAACATCATCACTAAACTTA+TGG + chr1_1:55164295-55164314 Msa0029750:exon 25.0%
! CTTATGTTTATGTTACCTAT+CGG + chr1_1:55164447-55164466 Msa0029750:CDS 25.0%
! ATATTTGTGCTTTCTTTGTT+AGG + chr1_1:55165201-55165220 Msa0029750:CDS 25.0%
! TATTTGTGCTTTCTTTGTTA+GGG + chr1_1:55165202-55165221 Msa0029750:CDS 25.0%
! TATTACATTGTATGGAAGTT+TGG + chr1_1:55165249-55165268 Msa0029750:intron 25.0%
! ATCTTTGTAATTGGAAATTC+AGG + chr1_1:55166015-55166034 Msa0029750:intron 25.0%
! TGTTGATCTACATTCAATTA+TGG + chr1_1:55166313-55166332 Msa0029750:CDS 25.0%
! TTAAATACAGTGACAAAAAC+AGG - chr1_1:55166357-55166376 None:intergenic 25.0%
! TACTATGAATATGTAGTAAG+TGG + chr1_1:55166499-55166518 Msa0029750:intron 25.0%
! ATTTCAAGACCAAAGTTAAA+AGG + chr1_1:55166677-55166696 Msa0029750:CDS 25.0%
! ATATAGCATGTAACTTTAGT+TGG + chr1_1:55166739-55166758 Msa0029750:three_prime_UTR 25.0%
! GAATAAAATTTGCACATCAA+TGG + chr1_1:55166799-55166818 Msa0029750:three_prime_UTR 25.0%
!!! ATTCGTTTTTGTGTAAAACA+AGG + chr1_1:55166851-55166870 Msa0029750:three_prime_UTR 25.0%
!!! TCATCACGATTAGTTTTTAT+TGG - chr1_1:55167109-55167128 None:intergenic 25.0%
! ATATAAGAAATTCGAATCGA+TGG - chr1_1:55167249-55167268 None:intergenic 25.0%
AACTCTTTGTATACATGTAG+AGG - chr1_1:55164338-55164357 None:intergenic 30.0%
! TAAAAAGGTATAGCCAACTT+GGG - chr1_1:55164387-55164406 None:intergenic 30.0%
! ATAAAAAGGTATAGCCAACT+TGG - chr1_1:55164388-55164407 None:intergenic 30.0%
CGATAGGTAACATAAACATA+AGG - chr1_1:55164449-55164468 None:intergenic 30.0%
! CAAAGTTCATAGTTTGTGTT+TGG + chr1_1:55164549-55164568 Msa0029750:intron 30.0%
!! TTAATCTTCTAGCTTAACCA+AGG - chr1_1:55164736-55164755 None:intergenic 30.0%
!! TTAATCTTCTAGCTTAACCA+AGG - chr1_1:55164736-55164755 None:intergenic 30.0%
GTTCGCAATTCTTGATATAA+TGG + chr1_1:55165422-55165441 Msa0029750:intron 30.0%
ATAAATGCTCCGAAATCAAT+AGG - chr1_1:55165657-55165676 None:intergenic 30.0%
GTAGCATAGCAAAAATTCTT+GGG + chr1_1:55165747-55165766 Msa0029750:CDS 30.0%
!! GGTTGAATAATATGGATTAG+AGG - chr1_1:55165845-55165864 None:intergenic 30.0%
!! TCGTTGATAGAAGAACTTTT+TGG - chr1_1:55165866-55165885 None:intergenic 30.0%
AATGTACCATATAGAAAACG+TGG - chr1_1:55165930-55165949 None:intergenic 30.0%
TTCTATATGGTACATTATGC+AGG + chr1_1:55165934-55165953 Msa0029750:CDS 30.0%
ACTTGTGGTCCATAATATAT+GGG + chr1_1:55166176-55166195 Msa0029750:CDS 30.0%
AAACCTAACCCCATATATTA+TGG - chr1_1:55166188-55166207 None:intergenic 30.0%
TATTAATGACAGGGAATTGT+TGG + chr1_1:55166282-55166301 Msa0029750:intron 30.0%
CCACAAATATAGTACAAAGA+GGG - chr1_1:55166380-55166399 None:intergenic 30.0%
CTTGGTGAAAAACTTTATCT+GGG + chr1_1:55166420-55166439 Msa0029750:CDS 30.0%
TCGTAATTCTTTAGCATCAT+AGG + chr1_1:55166589-55166608 Msa0029750:intron 30.0%
!!! TTTGTACTGCCTTTTAACTT+TGG - chr1_1:55166689-55166708 None:intergenic 30.0%
GTTAAAAGGCAGTACAAAAA+TGG + chr1_1:55166691-55166710 Msa0029750:CDS 30.0%
TTGGAAATTAAAGGTAGTAG+AGG + chr1_1:55166758-55166777 Msa0029750:three_prime_UTR 30.0%
CCACATAGGTTATAAAATTC+TGG - chr1_1:55166932-55166951 None:intergenic 30.0%
! CCAGAATTTTATAACCTATG+TGG + chr1_1:55166929-55166948 Msa0029750:three_prime_UTR 30.0%
TCGTGGAATTTCAAGAATAA+AGG - chr1_1:55166990-55167009 None:intergenic 30.0%
CACTAATAAAACAAAGTTCG+TGG - chr1_1:55167007-55167026 None:intergenic 30.0%
!! CTGATTTGGTAATATAATCC+CGG + chr1_1:55167046-55167065 Msa0029750:intron 30.0%
TAATATAATCCCGGATTTCA+TGG + chr1_1:55167055-55167074 Msa0029750:intron 30.0%
GAAAATGATAGATAAAGCGA+AGG - chr1_1:55167146-55167165 None:intergenic 30.0%
!! CATGTAACTGATTTGTCTAA+AGG - chr1_1:55167168-55167187 None:intergenic 30.0%
CTTTAGACAAATCAGTTACA+TGG + chr1_1:55167166-55167185 Msa0029750:intron 30.0%
TCTGAATCTTCCTTCAATCA+TGG + chr1_1:55164416-55164435 Msa0029750:CDS 35.0%
! CTCTCAAGAAAGTATGCAAA+AGG - chr1_1:55164500-55164519 None:intergenic 35.0%
! CTTTTGCATACTTTCTTGAG+AGG + chr1_1:55164498-55164517 Msa0029750:CDS 35.0%
! AATCATGATTGTAAGGCACT+CGG - chr1_1:55164575-55164594 None:intergenic 35.0%
TGCCTTACAATCATGATTCT+TGG + chr1_1:55164577-55164596 Msa0029750:intron 35.0%
CACCAAGAATCATGATTGTA+AGG - chr1_1:55164582-55164601 None:intergenic 35.0%
AAAAGAACAAGTGTCAGCTT+TGG - chr1_1:55165174-55165193 None:intergenic 35.0%
! GCTGACACTTGTTCTTTTTA+TGG + chr1_1:55165176-55165195 Msa0029750:CDS 35.0%
AAAGTACAAATTGAGTGCCA+TGG - chr1_1:55165313-55165332 None:intergenic 35.0%
AACATGGAAGCAAGAAATGT+TGG - chr1_1:55165357-55165376 None:intergenic 35.0%
CACTGCAATAATGAAGGTAA+TGG - chr1_1:55165394-55165413 None:intergenic 35.0%
CATTACCTTCATTATTGCAG+TGG + chr1_1:55165392-55165411 Msa0029750:CDS 35.0%
AATTTGGAAGGACACAAAAG+TGG - chr1_1:55165509-55165528 None:intergenic 35.0%
CTAGATTCTTCAACGGATAT+TGG + chr1_1:55165581-55165600 Msa0029750:intron 35.0%
!! AGAATTTTTGCTATGCTACG+TGG - chr1_1:55165746-55165765 None:intergenic 35.0%
CGTAGCATAGCAAAAATTCT+TGG + chr1_1:55165746-55165765 Msa0029750:CDS 35.0%
TTTCACCATGACACTATACA+AGG + chr1_1:55165793-55165812 Msa0029750:CDS 35.0%
TTCACCATGACACTATACAA+GGG + chr1_1:55165794-55165813 Msa0029750:CDS 35.0%
!! TATCAACGAGAGTGGATTAA+AGG + chr1_1:55165877-55165896 Msa0029750:CDS 35.0%
!! ATCAACGAGAGTGGATTAAA+GGG + chr1_1:55165878-55165897 Msa0029750:CDS 35.0%
TAGTGAGTGATAATTGAGCA+GGG - chr1_1:55166060-55166079 None:intergenic 35.0%
CTCAATTATCACTCACTACA+TGG + chr1_1:55166062-55166081 Msa0029750:CDS 35.0%
ACTACATGGATGTGCTTTAT+TGG + chr1_1:55166076-55166095 Msa0029750:CDS 35.0%
AACATAATAACCCTTCAGCA+TGG + chr1_1:55166134-55166153 Msa0029750:CDS 35.0%
GACTTGTGGTCCATAATATA+TGG + chr1_1:55166175-55166194 Msa0029750:CDS 35.0%
CTTGTGGTCCATAATATATG+GGG + chr1_1:55166177-55166196 Msa0029750:CDS 35.0%
TTATGGTGCACTGAGAAAAA+AGG + chr1_1:55166330-55166349 Msa0029750:CDS 35.0%
CCCTCTTTGTACTATATTTG+TGG + chr1_1:55166377-55166396 Msa0029750:CDS 35.0%
GCCACAAATATAGTACAAAG+AGG - chr1_1:55166381-55166400 None:intergenic 35.0%
! CCAGATAAAGTTTTTCACCA+AGG - chr1_1:55166422-55166441 None:intergenic 35.0%
CCTTGGTGAAAAACTTTATC+TGG + chr1_1:55166419-55166438 Msa0029750:CDS 35.0%
AGGTGCATTTATTGTGATCA+TGG + chr1_1:55166609-55166628 Msa0029750:CDS 35.0%
GGTGCATTTATTGTGATCAT+GGG + chr1_1:55166610-55166629 Msa0029750:CDS 35.0%
TGGGATTTGTAGGTTTATTC+TGG + chr1_1:55166819-55166838 Msa0029750:three_prime_UTR 35.0%
TAGCATTGCTCTTGTCTAAA+TGG - chr1_1:55166955-55166974 None:intergenic 35.0%
CGTGATTGCTAAAACTGATT+TGG + chr1_1:55167032-55167051 Msa0029750:intron 35.0%
GCTAAAACCATGATAAGGTG+TGG - chr1_1:55164365-55164384 None:intergenic 40.0%
CTTGGGCTAAAACCATGATA+AGG - chr1_1:55164370-55164389 None:intergenic 40.0%
!!! ATCATGGTTTTAGCCCAAGT+TGG + chr1_1:55164371-55164390 Msa0029750:CDS 40.0%
AGGACTCATTCCATGATTGA+AGG - chr1_1:55164429-55164448 None:intergenic 40.0%
AAAAGGAAACATCACAACCC+CGG - chr1_1:55164483-55164502 None:intergenic 40.0%
TCTTGTGAGATCCAAATGGA+CGG + chr1_1:55164650-55164669 Msa0029750:intron 40.0%
CAGCAGCATTAAGACTCTTA+GGG - chr1_1:55164684-55164703 None:intergenic 40.0%
! TCTAGCTTAACCAAGGTTCT+GGG - chr1_1:55164729-55164748 None:intergenic 40.0%
!! TTCTAGCTTAACCAAGGTTC+TGG - chr1_1:55164730-55164749 None:intergenic 40.0%
TCTTGTGAGATCCAAATGGA+CGG + chr1_1:55164650-55164669 Msa0029750:intron 40.0%
CAGCAGCATTAAGACTCTTA+GGG - chr1_1:55164684-55164703 None:intergenic 40.0%
! TCTAGCTTAACCAAGGTTCT+GGG - chr1_1:55164729-55164748 None:intergenic 40.0%
!! TTCTAGCTTAACCAAGGTTC+TGG - chr1_1:55164730-55164749 None:intergenic 40.0%
AAAATATGGCAGGATCACCA+TGG + chr1_1:55165293-55165312 Msa0029750:intron 40.0%
! GGAAGCTATAGTGTTGAACA+TGG - chr1_1:55165373-55165392 None:intergenic 40.0%
GTGAGTGCTAGATTCTTCAA+CGG + chr1_1:55165574-55165593 Msa0029750:intron 40.0%
!! AAGAGAGTTGACTTGAATGC+AGG + chr1_1:55165696-55165715 Msa0029750:intron 40.0%
! TTGACTTGAATGCAGGATTG+AGG + chr1_1:55165703-55165722 Msa0029750:intron 40.0%
AACACCAGCTAAGGATATCA+AGG - chr1_1:55165774-55165793 None:intergenic 40.0%
GACCTGTTATGAGAAACTTG+TGG + chr1_1:55165816-55165835 Msa0029750:CDS 40.0%
TGCCACAAGTTTCTCATAAC+AGG - chr1_1:55165821-55165840 None:intergenic 40.0%
AGTTCTTCTATCAACGAGAG+TGG + chr1_1:55165869-55165888 Msa0029750:CDS 40.0%
! GTTGTGCCACGTTTTCTATA+TGG + chr1_1:55165921-55165940 Msa0029750:CDS 40.0%
GTAGTGAGTGATAATTGAGC+AGG - chr1_1:55166061-55166080 None:intergenic 40.0%
! AACCCTTCAGCATGGATTAT+AGG + chr1_1:55166142-55166161 Msa0029750:CDS 40.0%
GTCCTATAATCCATGCTGAA+GGG - chr1_1:55166147-55166166 None:intergenic 40.0%
AGTCCTATAATCCATGCTGA+AGG - chr1_1:55166148-55166167 None:intergenic 40.0%
!! TAGGACTCAACATTGACTTG+TGG + chr1_1:55166161-55166180 Msa0029750:CDS 40.0%
GGTCCATAATATATGGGGTT+AGG + chr1_1:55166182-55166201 Msa0029750:intron 40.0%
TAATGACAGGGAATTGTTGG+TGG + chr1_1:55166285-55166304 Msa0029750:intron 40.0%
ATACTAGCATACTTCGTCCT+TGG + chr1_1:55166402-55166421 Msa0029750:CDS 40.0%
GTGAAAAACTTTATCTGGGC+AGG + chr1_1:55166424-55166443 Msa0029750:CDS 40.0%
AGGCAGTACAAAAATGGAGA+AGG + chr1_1:55166697-55166716 Msa0029750:CDS 40.0%
CAGTACAAAAATGGAGAAGG+AGG + chr1_1:55166700-55166719 Msa0029750:CDS 40.0%
TGCACATCAATGGGATTTGT+AGG + chr1_1:55166809-55166828 Msa0029750:three_prime_UTR 40.0%
TCTTGTCTAAATGGCCACAT+AGG - chr1_1:55166946-55166965 None:intergenic 40.0%
!! TGGCTGTTTTCCATGAAATC+CGG - chr1_1:55167068-55167087 None:intergenic 40.0%
GTTCAAGCCACACCTTATCA+TGG + chr1_1:55164355-55164374 Msa0029750:CDS 45.0%
TTGGATCTCACAAGACTCGA+GGG - chr1_1:55164645-55164664 None:intergenic 45.0%
TTTGGATCTCACAAGACTCG+AGG - chr1_1:55164646-55164665 None:intergenic 45.0%
! CGAGTCTTGTGAGATCCAAA+TGG + chr1_1:55164646-55164665 Msa0029750:intron 45.0%
GCAGCAGCATTAAGACTCTT+AGG - chr1_1:55164685-55164704 None:intergenic 45.0%
TTGGATCTCACAAGACTCGA+GGG - chr1_1:55164645-55164664 None:intergenic 45.0%
TTTGGATCTCACAAGACTCG+AGG - chr1_1:55164646-55164665 None:intergenic 45.0%
! CGAGTCTTGTGAGATCCAAA+TGG + chr1_1:55164646-55164665 Msa0029750:intron 45.0%
GCAGCAGCATTAAGACTCTT+AGG - chr1_1:55164685-55164704 None:intergenic 45.0%
! GAGTGCCACTGCAATAATGA+AGG - chr1_1:55165400-55165419 None:intergenic 45.0%
TCATTATTGCAGTGGCACTC+AGG + chr1_1:55165400-55165419 Msa0029750:CDS 45.0%
CATGGTGAAAACACCAGCTA+AGG - chr1_1:55165783-55165802 None:intergenic 45.0%
AGGTCCCTTGTATAGTGTCA+TGG - chr1_1:55165801-55165820 None:intergenic 45.0%
TGGGTTTGTATCTGTTGCTG+TGG + chr1_1:55166629-55166648 Msa0029750:CDS 45.0%
GGGTTTGTATCTGTTGCTGT+GGG + chr1_1:55166630-55166649 Msa0029750:CDS 45.0%
GGTTTGTATCTGTTGCTGTG+GGG + chr1_1:55166631-55166650 Msa0029750:CDS 45.0%
GTTTGTATCTGTTGCTGTGG+GGG + chr1_1:55166632-55166651 Msa0029750:CDS 45.0%
!! GGCTGTTTTCCATGAAATCC+GGG - chr1_1:55167067-55167086 None:intergenic 45.0%
TCATGGAAAACAGCCAGATG+TGG + chr1_1:55167072-55167091 Msa0029750:intron 45.0%
CATGGAAAACAGCCAGATGT+GGG + chr1_1:55167073-55167092 Msa0029750:intron 45.0%
ATGGAAAACAGCCAGATGTG+GGG + chr1_1:55167074-55167093 Msa0029750:intron 45.0%
GGTTATTTACACCCCACATC+TGG - chr1_1:55167088-55167107 None:intergenic 45.0%
!!! ATTTGTATAATTTTAAAATA+TGG + chr1_1:55165279-55165298 Msa0029750:intron 5.0%
!! TAGTTTTGCAGTTGCGCACG+TGG - chr1_1:55164620-55164639 None:intergenic 50.0%
TCTGGGTTCGAATCCAGCAT+TGG - chr1_1:55164712-55164731 None:intergenic 50.0%
TGGATTCGAACCCAGAACCT+TGG + chr1_1:55164716-55164735 Msa0029750:intron 50.0%
TCTGGGTTCGAATCCAGCAT+TGG - chr1_1:55164712-55164731 None:intergenic 50.0%
TGGATTCGAACCCAGAACCT+TGG + chr1_1:55164716-55164735 Msa0029750:intron 50.0%
GGGACCTTGATATCCTTAGC+TGG + chr1_1:55165767-55165786 Msa0029750:CDS 50.0%
! TGACAGGGAATTGTTGGTGG+TGG + chr1_1:55166288-55166307 Msa0029750:intron 50.0%
GGGGAAAGAAGGTGACAAAG+AGG + chr1_1:55166651-55166670 Msa0029750:CDS 50.0%
ACCTATCGGCATGTTCTCGC+CGG + chr1_1:55164461-55164480 Msa0029750:CDS 55.0%
TTGCGCACGTGGAGGATACT+CGG - chr1_1:55164609-55164628 None:intergenic 55.0%
! TTTTGCAGTTGCGCACGTGG+AGG - chr1_1:55164617-55164636 None:intergenic 55.0%
GGGAGAGTTTGCCGTCCATT+TGG - chr1_1:55164664-55164683 None:intergenic 55.0%
TGCTGCTGCATGTCCAATGC+TGG + chr1_1:55164696-55164715 Msa0029750:intron 55.0%
GGGAGAGTTTGCCGTCCATT+TGG - chr1_1:55164664-55164683 None:intergenic 55.0%
TGCTGCTGCATGTCCAATGC+TGG + chr1_1:55164696-55164715 Msa0029750:intron 55.0%
CTGTTGCTGTGGGGGAAAGA+AGG + chr1_1:55166640-55166659 Msa0029750:CDS 55.0%
CCTATCGGCATGTTCTCGCC+GGG + chr1_1:55164462-55164481 Msa0029750:CDS 60.0%
CTATCGGCATGTTCTCGCCG+GGG + chr1_1:55164463-55164482 Msa0029750:CDS 60.0%
CCCGGCGAGAACATGCCGAT+AGG - chr1_1:55164465-55164484 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 55164216 55167363 55164216 ID=Msa0029750;Name=Msa0029750
chr1_1 mRNA 55164216 55167363 55164216 ID=Msa0029750-mRNA-1;Parent=Msa0029750;Name=Msa0029750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=98|1|1|1|0.75|0.66|9|365|357
chr1_1 exon 55164216 55164519 55164216 ID=Msa0029750-mRNA-1:exon:16500;Parent=Msa0029750-mRNA-1
chr1_1 exon 55165161 55165223 55165161 ID=Msa0029750-mRNA-1:exon:16501;Parent=Msa0029750-mRNA-1
chr1_1 exon 55165305 55165421 55165305 ID=Msa0029750-mRNA-1:exon:16502;Parent=Msa0029750-mRNA-1
chr1_1 exon 55165718 55165955 55165718 ID=Msa0029750-mRNA-1:exon:16503;Parent=Msa0029750-mRNA-1
chr1_1 exon 55166037 55166198 55166037 ID=Msa0029750-mRNA-1:exon:16504;Parent=Msa0029750-mRNA-1
chr1_1 exon 55166294 55166445 55166294 ID=Msa0029750-mRNA-1:exon:16505;Parent=Msa0029750-mRNA-1
chr1_1 exon 55166603 55166959 55166603 ID=Msa0029750-mRNA-1:exon:16506;Parent=Msa0029750-mRNA-1
chr1_1 exon 55167172 55167274 55167172 ID=Msa0029750-mRNA-1:exon:16507;Parent=Msa0029750-mRNA-1
chr1_1 exon 55167323 55167363 55167323 ID=Msa0029750-mRNA-1:exon:16508;Parent=Msa0029750-mRNA-1
chr1_1 five_prime_UTR 55164216 55164313 55164216 ID=Msa0029750-mRNA-1:five_prime_utr;Parent=Msa0029750-mRNA-1
chr1_1 CDS 55164314 55164519 55164314 ID=Msa0029750-mRNA-1:cds;Parent=Msa0029750-mRNA-1
chr1_1 CDS 55165161 55165223 55165161 ID=Msa0029750-mRNA-1:cds;Parent=Msa0029750-mRNA-1
chr1_1 CDS 55165305 55165421 55165305 ID=Msa0029750-mRNA-1:cds;Parent=Msa0029750-mRNA-1
chr1_1 CDS 55165718 55165955 55165718 ID=Msa0029750-mRNA-1:cds;Parent=Msa0029750-mRNA-1
chr1_1 CDS 55166037 55166198 55166037 ID=Msa0029750-mRNA-1:cds;Parent=Msa0029750-mRNA-1
chr1_1 CDS 55166294 55166445 55166294 ID=Msa0029750-mRNA-1:cds;Parent=Msa0029750-mRNA-1
chr1_1 CDS 55166603 55166738 55166603 ID=Msa0029750-mRNA-1:cds;Parent=Msa0029750-mRNA-1
chr1_1 three_prime_UTR 55166739 55166959 55166739 ID=Msa0029750-mRNA-1:three_prime_utr;Parent=Msa0029750-mRNA-1
chr1_1 three_prime_UTR 55167172 55167274 55167172 ID=Msa0029750-mRNA-1:three_prime_utr;Parent=Msa0029750-mRNA-1
chr1_1 three_prime_UTR 55167323 55167363 55167323 ID=Msa0029750-mRNA-1:three_prime_utr;Parent=Msa0029750-mRNA-1
Gene Sequence

>Msa0029750

ATGGAGAAAAAAGTACTTTCTCCTCTACATGTATACAAAGAGTTCAAGCCACACCTTATCATGGTTTTAGCCCAAGTTGGCTATACCTTTTTATATTTTATCTCTGAATCTTCCTTCAATCATGGAATGAGTCCTTATGTTTATGTTACCTATCGGCATGTTCTCGCCGGGGTTGTGATGTTTCCTTTTGCATACTTTCTTGAGAGAAGTTTAAGACCAAAGCTGACACTTGTTCTTTTTATGGAAATATTTGTGCTTTCTTTGTTAGGGATCACCATGGCACTCAATTTGTACTTTGCAAGCTTAAAGTATACTTCTCCAACATTTCTTGCTTCCATGTTCAACACTATAGCTTCCATTACCTTCATTATTGCAGTGGCACTCAGGATTGAGGTTATTGATCTTAGAAATCCACGTAGCATAGCAAAAATTCTTGGGACCTTGATATCCTTAGCTGGTGTTTTCACCATGACACTATACAAGGGACCTGTTATGAGAAACTTGTGGCATCCTCTAATCCATATTATTCAACCAAAAAGTTCTTCTATCAACGAGAGTGGATTAAAGGGTTCAATTCTTACTGTCTCATGTTGTGCCACGTTTTCTATATGGTACATTATGCAGGCATCAACTCTAAAAAGATACCCTGCTCAATTATCACTCACTACATGGATGTGCTTTATTGGAGCAGCACAATCAGCTATTTTCACAGTAATAGTAGAACATAATAACCCTTCAGCATGGATTATAGGACTCAACATTGACTTGTGGTCCATAATATATGGGGGAATTGTTGGTGGTGGTTTGTTGATCTACATTCAATTATGGTGCACTGAGAAAAAAGGTCCTGTTTTTGTCACTGTATTTAACCCTCTTTGTACTATATTTGTGGCAATACTAGCATACTTCGTCCTTGGTGAAAAACTTTATCTGGGCAGCATCATAGGTGCATTTATTGTGATCATGGGTTTGTATCTGTTGCTGTGGGGGAAAGAAGGTGACAAAGAGGTTGATTTCAAGACCAAAGTTAAAAGGCAGTACAAAAATGGAGAAGGAGGCTTAGAAGAATGCTGA
Protein sequence

>Msa0029750

MEKKVLSPLHVYKEFKPHLIMVLAQVGYTFLYFISESSFNHGMSPYVYVTYRHVLAGVVMFPFAYFLERSLRPKLTLVLFMEIFVLSLLGITMALNLYFASLKYTSPTFLASMFNTIASITFIIAVALRIEVIDLRNPRSIAKILGTLISLAGVFTMTLYKGPVMRNLWHPLIHIIQPKSSSINESGLKGSILTVSCCATFSIWYIMQASTLKRYPAQLSLTTWMCFIGAAQSAIFTVIVEHNNPSAWIIGLNIDLWSIIYGGIVGGGLLIYIQLWCTEKKGPVFVTVFNPLCTIFVAILAYFVLGEKLYLGSIIGAFIVIMGLYLLLWGKEGDKEVDFKTKVKRQYKNGEGGLEEC*