Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030210 | XP_003617509.1 | 85.780 | 436 | 13 | 3 | 33 | 419 | 1 | 436 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030210 | sp|Q9LJU7|PPA18_ARATH | 63.073 | 436 | 110 | 4 | 33 | 419 | 1 | 434 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030210 | Msa0077760 | 0.817990 | 2.476058e-52 | -8.615850e-47 |
| Msa0030210 | Msa1454850 | 0.883607 | 3.887560e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030210 | MtrunA17_Chr5g0443881 | 85.780 | 436 | 13 | 3 | 33 | 419 | 1 | 436 | 0.0 | 754 |
| Msa0030210 | MtrunA17_Chr3g0098721 | 69.302 | 430 | 81 | 4 | 39 | 419 | 3 | 430 | 0.0 | 607 |
| Msa0030210 | MtrunA17_Chr1g0178831 | 56.316 | 380 | 116 | 5 | 76 | 405 | 41 | 420 | 4.33e-145 | 421 |
| Msa0030210 | MtrunA17_Chr7g0266131 | 51.084 | 415 | 151 | 6 | 38 | 402 | 13 | 425 | 6.77e-141 | 410 |
| Msa0030210 | MtrunA17_Chr7g0266151 | 49.645 | 423 | 150 | 8 | 35 | 405 | 11 | 422 | 4.35e-133 | 390 |
| Msa0030210 | MtrunA17_Chr4g0064541 | 37.280 | 397 | 173 | 8 | 76 | 397 | 50 | 445 | 4.01e-72 | 235 |
| Msa0030210 | MtrunA17_Chr4g0019091 | 35.696 | 395 | 177 | 9 | 81 | 399 | 55 | 448 | 2.91e-68 | 224 |
| Msa0030210 | MtrunA17_Chr1g0211041 | 36.364 | 396 | 174 | 10 | 81 | 399 | 56 | 450 | 6.07e-68 | 224 |
| Msa0030210 | MtrunA17_Chr4g0019071 | 38.966 | 290 | 128 | 4 | 159 | 399 | 36 | 325 | 2.14e-61 | 203 |
| Msa0030210 | MtrunA17_Chr6g0453731 | 33.017 | 421 | 176 | 11 | 30 | 353 | 5 | 416 | 6.98e-57 | 197 |
| Msa0030210 | MtrunA17_Chr3g0121411 | 36.888 | 347 | 144 | 7 | 81 | 353 | 71 | 416 | 1.63e-54 | 190 |
| Msa0030210 | MtrunA17_Chr7g0236041 | 36.023 | 347 | 147 | 7 | 81 | 353 | 70 | 415 | 5.20e-54 | 189 |
| Msa0030210 | MtrunA17_Chr3g0121431 | 36.023 | 347 | 147 | 7 | 81 | 353 | 126 | 471 | 1.54e-52 | 186 |
| Msa0030210 | MtrunA17_Chr4g0022251 | 29.595 | 321 | 158 | 10 | 94 | 351 | 231 | 546 | 1.22e-27 | 115 |
| Msa0030210 | MtrunA17_Chr1g0173511 | 29.514 | 288 | 153 | 10 | 104 | 351 | 144 | 421 | 5.60e-25 | 107 |
| Msa0030210 | MtrunA17_Chr4g0043021 | 36.957 | 184 | 89 | 6 | 189 | 346 | 304 | 486 | 1.84e-20 | 94.4 |
| Msa0030210 | MtrunA17_Chr4g0043001 | 34.973 | 183 | 94 | 5 | 189 | 346 | 304 | 486 | 5.97e-19 | 89.7 |
| Msa0030210 | MtrunA17_Chr8g0364481 | 29.032 | 186 | 112 | 6 | 183 | 351 | 328 | 510 | 5.38e-14 | 74.3 |
| Msa0030210 | MtrunA17_Chr3g0116051 | 24.126 | 286 | 158 | 9 | 178 | 407 | 334 | 616 | 9.12e-13 | 70.5 |
| Msa0030210 | MtrunA17_Chr4g0057551 | 27.354 | 223 | 128 | 9 | 160 | 351 | 306 | 525 | 9.83e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030210 | AT3G20500.1 | 63.073 | 436 | 110 | 4 | 33 | 419 | 1 | 434 | 0.0 | 567 |
| Msa0030210 | AT3G52820.1 | 54.354 | 379 | 123 | 4 | 74 | 402 | 40 | 418 | 2.74e-139 | 407 |
| Msa0030210 | AT3G52780.1 | 50.235 | 426 | 152 | 11 | 38 | 407 | 4 | 425 | 1.25e-135 | 397 |
| Msa0030210 | AT3G52810.1 | 49.428 | 437 | 160 | 8 | 34 | 414 | 3 | 434 | 5.77e-133 | 390 |
| Msa0030210 | AT3G52780.2 | 52.647 | 340 | 128 | 8 | 35 | 346 | 2 | 336 | 3.53e-114 | 340 |
| Msa0030210 | AT5G34850.1 | 33.262 | 469 | 227 | 11 | 31 | 419 | 7 | 469 | 5.18e-70 | 230 |
| Msa0030210 | AT2G18130.1 | 37.500 | 376 | 178 | 9 | 81 | 399 | 54 | 429 | 1.88e-67 | 222 |
| Msa0030210 | AT1G56360.1 | 32.889 | 450 | 214 | 13 | 34 | 399 | 3 | 448 | 5.44e-66 | 219 |
| Msa0030210 | AT4G36350.1 | 32.816 | 451 | 216 | 12 | 33 | 399 | 1 | 448 | 2.71e-64 | 214 |
| Msa0030210 | AT2G16430.2 | 33.258 | 442 | 213 | 12 | 38 | 399 | 13 | 452 | 4.56e-64 | 214 |
| Msa0030210 | AT2G27190.1 | 33.503 | 394 | 187 | 7 | 81 | 399 | 60 | 453 | 4.79e-60 | 203 |
| Msa0030210 | AT4G13700.1 | 34.963 | 409 | 174 | 13 | 35 | 353 | 4 | 410 | 8.44e-57 | 194 |
| Msa0030210 | AT2G16430.1 | 36.923 | 325 | 150 | 8 | 127 | 399 | 11 | 332 | 1.41e-56 | 191 |
| Msa0030210 | AT3G07130.1 | 44.628 | 242 | 106 | 4 | 138 | 353 | 170 | 409 | 2.69e-54 | 190 |
| Msa0030210 | AT4G13700.2 | 34.005 | 397 | 170 | 13 | 35 | 341 | 4 | 398 | 7.44e-51 | 177 |
| Msa0030210 | AT3G07130.2 | 39.273 | 275 | 106 | 5 | 138 | 353 | 170 | 442 | 1.23e-47 | 172 |
| Msa0030210 | AT3G46120.1 | 28.953 | 449 | 191 | 14 | 28 | 416 | 3 | 383 | 8.04e-42 | 153 |
| Msa0030210 | AT2G32770.2 | 34.247 | 292 | 128 | 4 | 126 | 353 | 57 | 348 | 4.54e-40 | 149 |
| Msa0030210 | AT2G32770.3 | 34.247 | 292 | 128 | 4 | 126 | 353 | 138 | 429 | 2.30e-39 | 149 |
| Msa0030210 | AT2G32770.1 | 28.425 | 292 | 116 | 5 | 126 | 353 | 138 | 400 | 1.04e-23 | 103 |
| Msa0030210 | AT2G03450.1 | 27.812 | 320 | 155 | 9 | 189 | 441 | 304 | 614 | 7.94e-22 | 99.0 |
| Msa0030210 | AT1G52940.1 | 35.088 | 228 | 108 | 11 | 81 | 269 | 15 | 241 | 1.09e-21 | 94.4 |
| Msa0030210 | AT1G13900.1 | 27.500 | 320 | 164 | 9 | 189 | 441 | 305 | 623 | 2.74e-21 | 97.4 |
| Msa0030210 | AT5G50400.2 | 24.514 | 257 | 140 | 7 | 183 | 388 | 255 | 508 | 1.57e-13 | 73.2 |
| Msa0030210 | AT1G13750.1 | 24.096 | 332 | 161 | 12 | 135 | 388 | 264 | 582 | 1.85e-13 | 72.8 |
| Msa0030210 | AT5G50400.1 | 24.514 | 257 | 140 | 7 | 183 | 388 | 327 | 580 | 1.96e-13 | 72.8 |
Find 122 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAGACCTCATTCTTAAA+TGG | 0.120682 | 1_1:+56309212 | Msa0030210:three_prime_UTR |
| CCTCTAACAAAAGGTTTAAT+TGG | 0.127193 | 1_1:-56309317 | None:intergenic |
| CTCATCTTTGAGGTCTTAAA+TGG | 0.132134 | 1_1:-56309418 | None:intergenic |
| TCACCTTCATTTGTAGAATA+TGG | 0.176309 | 1_1:+56307367 | Msa0030210:CDS |
| AGACATGACATGAATCTATT+AGG | 0.226505 | 1_1:-56309470 | None:intergenic |
| GACTTGGAATTGTTTGTAAA+TGG | 0.231133 | 1_1:+56309583 | Msa0030210:three_prime_UTR |
| AGTAAAGCTAGTAATTTCTT+TGG | 0.259237 | 1_1:+56309613 | Msa0030210:three_prime_UTR |
| CTGATTGTATGCAACATCTT+TGG | 0.275554 | 1_1:+56307692 | Msa0030210:CDS |
| CAGCTCACCATGACCAAAAC+TGG | 0.283751 | 1_1:-56308940 | None:intergenic |
| ATATGATGTTTACCTTCTTC+CGG | 0.295930 | 1_1:+56307654 | Msa0030210:CDS |
| CCAGCCACAGCAAAAGTAAT+TGG | 0.296149 | 1_1:-56307574 | None:intergenic |
| TTTAAGACTTGGTACCTAAT+AGG | 0.297802 | 1_1:+56309137 | Msa0030210:CDS |
| CAATTAAGGCCGATGATATC+TGG | 0.304317 | 1_1:+56309021 | Msa0030210:CDS |
| TAAACTCAAGTCATGCCTTC+TGG | 0.322543 | 1_1:+56308970 | Msa0030210:CDS |
| TTTGCTGTGGCTGGCGATCT+TGG | 0.323641 | 1_1:+56307583 | Msa0030210:CDS |
| ATTAGGTACCAAGTCTTAAA+TGG | 0.326920 | 1_1:-56309134 | None:intergenic |
| TATGATGTTTACCTTCTTCC+GGG | 0.355153 | 1_1:+56307655 | Msa0030210:CDS |
| GAATTCCGTGAAGCCAGTTT+TGG | 0.358064 | 1_1:+56308927 | Msa0030210:CDS |
| AAAGTAATTGGAAATTTAGA+TGG | 0.363207 | 1_1:-56307562 | None:intergenic |
| TTGTATCGTATAATTCTAGA+TGG | 0.365272 | 1_1:+56307818 | Msa0030210:CDS |
| TGATAATGACGAGTCAATTA+AGG | 0.376333 | 1_1:+56309007 | Msa0030210:CDS |
| GGAGTGATTGAGTACCTATT+AGG | 0.376374 | 1_1:+56309349 | Msa0030210:three_prime_UTR |
| TGATATCTGGATAACCTCTT+TGG | 0.380204 | 1_1:+56309034 | Msa0030210:CDS |
| TGATTGTATGCAACATCTTT+GGG | 0.398477 | 1_1:+56307693 | Msa0030210:CDS |
| TTAAGACCTCATTCTTAAAT+GGG | 0.400436 | 1_1:+56309213 | Msa0030210:three_prime_UTR |
| CTCTAACAAAAGGTTTAATT+GGG | 0.402853 | 1_1:-56309316 | None:intergenic |
| GACATGACATGAATCTATTA+GGG | 0.411709 | 1_1:-56309469 | None:intergenic |
| AGCGTTGATTTAGTTCTTGC+TGG | 0.416104 | 1_1:+56308534 | Msa0030210:CDS |
| CATGGTGATGTTGTCAAAGT+TGG | 0.417007 | 1_1:-56303849 | None:intergenic |
| AATTCTGACCACTTTGGTTG+TGG | 0.430371 | 1_1:-56308909 | None:intergenic |
| GGTGTTCATGTTATCATGCT+AGG | 0.430528 | 1_1:+56307901 | Msa0030210:CDS |
| ATCCCAACCTTACCCTCAAC+AGG | 0.435642 | 1_1:+56304000 | Msa0030210:CDS |
| AGTTTGACCTGTTGAGGGTA+AGG | 0.448971 | 1_1:-56304007 | None:intergenic |
| CATGACCAAAACTGGCTTCA+CGG | 0.449213 | 1_1:-56308932 | None:intergenic |
| TGTCAAAGGTGGACAGGAAA+AGG | 0.453174 | 1_1:+56308400 | Msa0030210:CDS |
| GCTGGCGATCTTGGTCAAAC+TGG | 0.454476 | 1_1:+56307592 | Msa0030210:CDS |
| GTATATATACTCTAAGGACT+TGG | 0.459869 | 1_1:+56309567 | Msa0030210:three_prime_UTR |
| ATGTTTGTCATCAGTTATCC+AGG | 0.471536 | 1_1:-56307344 | None:intergenic |
| CAAGTCATGCCTTCTGGAGT+TGG | 0.472571 | 1_1:+56308976 | Msa0030210:CDS |
| AACAAGGCTCACCAAGGCGC+AGG | 0.474464 | 1_1:+56308468 | Msa0030210:CDS |
| GACCTGTTGAGGGTAAGGTT+GGG | 0.475250 | 1_1:-56304002 | None:intergenic |
| AATAGAGATCCTCTAACAAA+AGG | 0.475698 | 1_1:-56309326 | None:intergenic |
| TGACCTGTTGAGGGTAAGGT+TGG | 0.482503 | 1_1:-56304003 | None:intergenic |
| AATGGAGACTCTCATCTTTG+AGG | 0.485625 | 1_1:-56309428 | None:intergenic |
| AAAGAGAGTTTGACCTGTTG+AGG | 0.487017 | 1_1:-56304013 | None:intergenic |
| AAGAATGAATTTGAGTTCCA+TGG | 0.488430 | 1_1:-56303867 | None:intergenic |
| GTTGATCCACTTTCCTCAAA+CGG | 0.490751 | 1_1:-56307847 | None:intergenic |
| ACTTAAACATTCCATGGCCA+TGG | 0.491149 | 1_1:+56303969 | Msa0030210:CDS |
| TAGATGGAAAATGCCGTTTG+AGG | 0.495189 | 1_1:+56307834 | Msa0030210:CDS |
| ATATAAAATATAATTATAAG+AGG | 0.502258 | 1_1:-56307434 | None:intergenic |
| ATTCATGTCATGTCTGCTAC+AGG | 0.504002 | 1_1:+56309478 | Msa0030210:three_prime_UTR |
| GTTCCATATTCTACAAATGA+AGG | 0.509529 | 1_1:-56307370 | None:intergenic |
| TCATATCATCCCCTGCGCCT+TGG | 0.511346 | 1_1:-56308479 | None:intergenic |
| AAGAGAGTTTGACCTGTTGA+GGG | 0.512663 | 1_1:-56304012 | None:intergenic |
| GTATTAAATAAATAATATTG+TGG | 0.516877 | 1_1:+56309291 | Msa0030210:three_prime_UTR |
| AAGATCTGTCAAAGGTGGAC+AGG | 0.518140 | 1_1:+56308394 | Msa0030210:CDS |
| ATGAAAGATCACCCGGAAGA+AGG | 0.520658 | 1_1:-56307666 | None:intergenic |
| GGTCTTCACCATTTAAGACT+TGG | 0.525012 | 1_1:+56309126 | Msa0030210:CDS |
| GGACTCGTTTGGTAGGCTTG+TGG | 0.525474 | 1_1:+56307714 | Msa0030210:intron |
| CAGGTACATATATCTCTGGC+AGG | 0.528508 | 1_1:+56307301 | Msa0030210:intron |
| GCGATCTTGGTCAAACTGGT+TGG | 0.528945 | 1_1:+56307596 | Msa0030210:CDS |
| CACGGCCTTGCACTAGCAAA+CGG | 0.529732 | 1_1:-56307739 | None:intergenic |
| TTTCCTTCTGTTACCATCCA+CGG | 0.529767 | 1_1:-56307757 | None:intergenic |
| ATGGTGATGTTGTCAAAGTT+GGG | 0.531195 | 1_1:-56303848 | None:intergenic |
| TATTAAATAAATAATATTGT+GGG | 0.535219 | 1_1:+56309292 | Msa0030210:three_prime_UTR |
| TCATCTTTGAGGTCTTAAAT+GGG | 0.535398 | 1_1:-56309417 | None:intergenic |
| TCACGGAATTCTGACCACTT+TGG | 0.536302 | 1_1:-56308915 | None:intergenic |
| ATAAGAACAAACATGAGCTC+AGG | 0.537422 | 1_1:+56309075 | Msa0030210:CDS |
| GTAATTGGAAATTTAGATGG+AGG | 0.539372 | 1_1:-56307559 | None:intergenic |
| GTGTTCATGTTATCATGCTA+GGG | 0.541956 | 1_1:+56307902 | Msa0030210:CDS |
| CTTAAACATTCCATGGCCAT+GGG | 0.543217 | 1_1:+56303970 | Msa0030210:CDS |
| ATAACCTCTTTGGTAAGCTC+AGG | 0.544896 | 1_1:+56309044 | Msa0030210:CDS |
| TGCTAGTGCAAGGCCGTGGA+TGG | 0.546368 | 1_1:+56307744 | Msa0030210:CDS |
| TGGAGCCGTTTGCTAGTGCA+AGG | 0.547738 | 1_1:+56307734 | Msa0030210:CDS |
| ATGCCTTCTGGAGTTGGCAT+AGG | 0.549272 | 1_1:+56308982 | Msa0030210:CDS |
| GATTTAGAATCCCATGGCCA+TGG | 0.551935 | 1_1:-56303980 | None:intergenic |
| TACAGTAACTAGTGGAAGGA+AGG | 0.556578 | 1_1:-56303822 | None:intergenic |
| ATTATACGATACAAATTCAT+CGG | 0.559189 | 1_1:-56307809 | None:intergenic |
| TGAAATAACACAAGCAGCCA+AGG | 0.561724 | 1_1:-56308426 | None:intergenic |
| AGAGCAATACAGATGGCTAA+AGG | 0.563220 | 1_1:+56307951 | Msa0030210:CDS |
| ACAAGGCTCACCAAGGCGCA+GGG | 0.565155 | 1_1:+56308469 | Msa0030210:CDS |
| TAAAATATAATTATAAGAGG+TGG | 0.567180 | 1_1:-56307431 | None:intergenic |
| ATAAAACATAAGATCAGAAG+TGG | 0.571378 | 1_1:+56303776 | Msa0030210:CDS |
| CGTTTGCTAGTGCAAGGCCG+TGG | 0.571538 | 1_1:+56307740 | Msa0030210:CDS |
| AAAATGCCGTTTGAGGAAAG+TGG | 0.584130 | 1_1:+56307841 | Msa0030210:CDS |
| AACATATTGATCAGCAGTGA+CGG | 0.585626 | 1_1:-56303927 | None:intergenic |
| AACTAGTGGAAGGAAGGAAG+AGG | 0.597308 | 1_1:-56303816 | None:intergenic |
| GGTTGGGATTTAGAATCCCA+TGG | 0.602227 | 1_1:-56303986 | None:intergenic |
| TTGTGTTATTTCACGTGCCG+TGG | 0.602886 | 1_1:+56308436 | Msa0030210:CDS |
| GTAGAATATGGAACATTACC+TGG | 0.603088 | 1_1:+56307379 | Msa0030210:CDS |
| GGATGATATGATGACAGTCA+TGG | 0.603599 | 1_1:+56308491 | Msa0030210:CDS |
| TTGGGTATTACAGTAACTAG+TGG | 0.604113 | 1_1:-56303830 | None:intergenic |
| TGTGGGCCCATTTAAGAATG+AGG | 0.606750 | 1_1:-56309219 | None:intergenic |
| ATTCCTATGCCAACTCCAGA+AGG | 0.608575 | 1_1:-56308985 | None:intergenic |
| GCATCCTGAGCTTACCAAAG+AGG | 0.609678 | 1_1:-56309048 | None:intergenic |
| AGATATGATTCAATATCTGA+AGG | 0.617637 | 1_1:+56307403 | Msa0030210:CDS |
| TGAGGGTCTTAAAAGATGCA+AGG | 0.618500 | 1_1:+56309184 | Msa0030210:CDS |
| AGAGGTTATCCAGATATCAT+CGG | 0.619399 | 1_1:-56309030 | None:intergenic |
| TCAGCATATGAAAGATCACC+CGG | 0.620769 | 1_1:-56307673 | None:intergenic |
| AACAGAAGGAAATCATGAAG+AGG | 0.625469 | 1_1:+56307768 | Msa0030210:CDS |
| TGGACAGGAAAAGGACACCT+TGG | 0.626483 | 1_1:+56308409 | Msa0030210:CDS |
| ACGCTGGCAGCATAAAGCAA+TGG | 0.627780 | 1_1:-56308516 | None:intergenic |
| ACAAATTCATCGGTTAACAA+TGG | 0.636241 | 1_1:-56307799 | None:intergenic |
| TCTACAGGAAGATCTGTCAA+AGG | 0.636721 | 1_1:+56308386 | Msa0030210:intron |
| ACAGACACATGAGAATAACC+TGG | 0.637151 | 1_1:+56307326 | Msa0030210:CDS |
| ACAGGAAGATCTGTCAAAGG+TGG | 0.639546 | 1_1:+56308389 | Msa0030210:intron |
| AGCAAGAACTAAATCAACGC+TGG | 0.641446 | 1_1:-56308532 | None:intergenic |
| TGGTTGGACTAAATCAACAT+TGG | 0.647792 | 1_1:+56307612 | Msa0030210:CDS |
| AAAGATGAGAGTCTCCATTG+TGG | 0.650483 | 1_1:+56309432 | Msa0030210:three_prime_UTR |
| AGGCCGTGGATGGTAACAGA+AGG | 0.651742 | 1_1:+56307754 | Msa0030210:CDS |
| GATATTGAATCATATCTACC+AGG | 0.651988 | 1_1:-56307397 | None:intergenic |
| ACATATATCCACAACCAAAG+TGG | 0.656207 | 1_1:+56308901 | Msa0030210:CDS |
| CAAGGCTCACCAAGGCGCAG+GGG | 0.658372 | 1_1:+56308470 | Msa0030210:CDS |
| CATGCTTAGAGCATCTACAA+TGG | 0.662085 | 1_1:+56309100 | Msa0030210:CDS |
| GTATTACAGTAACTAGTGGA+AGG | 0.664352 | 1_1:-56303826 | None:intergenic |
| CAACTTTGACAACATCACCA+TGG | 0.667387 | 1_1:+56303850 | Msa0030210:CDS |
| TTAGAGCATCTACAATGGTG+AGG | 0.674732 | 1_1:+56309105 | Msa0030210:CDS |
| AGTACTCAGAGCAATACAGA+TGG | 0.679754 | 1_1:+56307944 | Msa0030210:CDS |
| AATAGTAACAAGGCTCACCA+AGG | 0.684934 | 1_1:+56308462 | Msa0030210:CDS |
| TGTCATAAGAGCATCCACAA+TGG | 0.690434 | 1_1:-56309446 | None:intergenic |
| GCCGTGGTATAATAGTAACA+AGG | 0.700336 | 1_1:+56308452 | Msa0030210:CDS |
| GCCTTGTTACTATTATACCA+CGG | 0.702987 | 1_1:-56308453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+AGG | + | chr1_1:56305260-56305279 | Msa0030210:intron | 0.0% |
| !! | ATATATATATATATATATAA+GGG | + | chr1_1:56305303-56305322 | Msa0030210:intron | 0.0% |
| !!! | TAATTATTATTTTAATAAAA+AGG | - | chr1_1:56309248-56309267 | None:intergenic | 0.0% |
| !!! | TATATTTTTTTTTTTGATTC+TGG | + | chr1_1:56304094-56304113 | Msa0030210:intron | 10.0% |
| !!! | TTAAAAAAGTAATTTTCTTA+AGG | - | chr1_1:56304258-56304277 | None:intergenic | 10.0% |
| !!! | AAAAAATCTCATATTTTTTT+TGG | - | chr1_1:56304333-56304352 | None:intergenic | 10.0% |
| !!! | TAAAATTTTCTTACAAAAAA+TGG | + | chr1_1:56304689-56304708 | Msa0030210:intron | 10.0% |
| !! | TTATGTATGTTTATTTATTT+AGG | + | chr1_1:56306923-56306942 | Msa0030210:intron | 10.0% |
| !! | TATGTATGTTTATTTATTTA+GGG | + | chr1_1:56306924-56306943 | Msa0030210:intron | 10.0% |
| !! | GTATTAAATAAATAATATTG+TGG | + | chr1_1:56309291-56309310 | Msa0030210:three_prime_UTR | 10.0% |
| !! | TTTAATTGCTTGTATTATTA+GGG | + | chr1_1:56304159-56304178 | Msa0030210:intron | 15.0% |
| !!! | TATGTTTCTTAATTTGTATT+TGG | - | chr1_1:56304653-56304672 | None:intergenic | 15.0% |
| !! | TAAAATATAATTATAAGAGG+TGG | - | chr1_1:56307434-56307453 | None:intergenic | 15.0% |
| !!! | AATTATATTTTATATAGCTC+AGG | + | chr1_1:56307442-56307461 | Msa0030210:CDS | 15.0% |
| !!! | TTTATTTTAATTTCTAAGCA+CGG | + | chr1_1:56308604-56308623 | Msa0030210:intron | 15.0% |
| !!! | TAAAAATTTGTTATCTGAAT+TGG | + | chr1_1:56308789-56308808 | Msa0030210:intron | 15.0% |
| !!! | TTTTAATAATAGTACCTAAT+AGG | - | chr1_1:56309366-56309385 | None:intergenic | 15.0% |
| !!! | ATAGTAGTTCTATTTCTATA+GGG | - | chr1_1:56304137-56304156 | None:intergenic | 20.0% |
| !!! | AATAGTAGTTCTATTTCTAT+AGG | - | chr1_1:56304138-56304157 | None:intergenic | 20.0% |
| !! | GTTTAATTGCTTGTATTATT+AGG | + | chr1_1:56304158-56304177 | Msa0030210:intron | 20.0% |
| !! | TTAATTGCTTGTATTATTAG+GGG | + | chr1_1:56304160-56304179 | Msa0030210:intron | 20.0% |
| !!! | ATCTTATTTCATTGCTATAT+CGG | - | chr1_1:56304512-56304531 | None:intergenic | 20.0% |
| !!! | TTTTTGACTTATACCATATT+CGG | - | chr1_1:56304731-56304750 | None:intergenic | 20.0% |
| !! | TGTGCAAATGTATAAAAAAA+AGG | - | chr1_1:56304782-56304801 | None:intergenic | 20.0% |
| !!! | ATTTTTTTACAAGTGATGTA+CGG | - | chr1_1:56305161-56305180 | None:intergenic | 20.0% |
| !!! | AGTACAATTTTTAATACATG+TGG | + | chr1_1:56305380-56305399 | Msa0030210:intron | 20.0% |
| !!! | ATATCGTGTTATTATGATAT+AGG | - | chr1_1:56305822-56305841 | None:intergenic | 20.0% |
| !!! | TGAAACAGTGAATTTTAAAA+AGG | + | chr1_1:56305960-56305979 | Msa0030210:intron | 20.0% |
| !! | ATTCAGTTGAATAAAAACTA+TGG | + | chr1_1:56306482-56306501 | Msa0030210:intron | 20.0% |
| !!! | CTAAGAATCTGAAATTTAAT+AGG | - | chr1_1:56306976-56306995 | None:intergenic | 20.0% |
| !!! | GAAATTCATATAACTACTTT+TGG | - | chr1_1:56307050-56307069 | None:intergenic | 20.0% |
| !! | AAAGTAATTGGAAATTTAGA+TGG | - | chr1_1:56307565-56307584 | None:intergenic | 20.0% |
| !! | ATTATACGATACAAATTCAT+CGG | - | chr1_1:56307812-56307831 | None:intergenic | 20.0% |
| !! | ATTACACTTATGGAAATATA+CGG | - | chr1_1:56307988-56308007 | None:intergenic | 20.0% |
| !! | TATATTTCCATAAGTGTAAT+GGG | + | chr1_1:56307988-56308007 | Msa0030210:intron | 20.0% |
| !! | AACTTATATGAAAAACAGTT+TGG | - | chr1_1:56308139-56308158 | None:intergenic | 20.0% |
| !! | AATAAAGGCTAAACTATAAA+AGG | - | chr1_1:56308590-56308609 | None:intergenic | 20.0% |
| !! | GTGCTTAGAAATTAAAATAA+AGG | - | chr1_1:56308605-56308624 | None:intergenic | 20.0% |
| !!! | AAATTTTTATAATGTGTCTC+TGG | - | chr1_1:56308778-56308797 | None:intergenic | 20.0% |
| !! | AAACAACCTTAATAGTTATA+TGG | - | chr1_1:56308833-56308852 | None:intergenic | 20.0% |
| !! | TAACTATTAAGGTTGTTTAT+TGG | + | chr1_1:56308835-56308854 | Msa0030210:intron | 20.0% |
| !!! | TTTTAATAAAAAGGTGATGT+GGG | - | chr1_1:56309239-56309258 | None:intergenic | 20.0% |
| !!! | ATTTTAATAAAAAGGTGATG+TGG | - | chr1_1:56309240-56309259 | None:intergenic | 20.0% |
| !!! | CTTTTTGTATATATACTCTA+AGG | + | chr1_1:56309561-56309580 | Msa0030210:three_prime_UTR | 20.0% |
| ! | ATAAAACATAAGATCAGAAG+TGG | + | chr1_1:56303776-56303795 | Msa0030210:CDS | 25.0% |
| !!! | TTAAGTTTTTTCTTGGCAAA+GGG | - | chr1_1:56303955-56303974 | None:intergenic | 25.0% |
| !!! | TTTAAGTTTTTTCTTGGCAA+AGG | - | chr1_1:56303956-56303975 | None:intergenic | 25.0% |
| !!! | GGAATGTTTAAGTTTTTTCT+TGG | - | chr1_1:56303962-56303981 | None:intergenic | 25.0% |
| ! | GAAAAAACTTAAACATTCCA+TGG | + | chr1_1:56303963-56303982 | Msa0030210:CDS | 25.0% |
| ! | ATACTTCCTATAATACCAAA+AGG | - | chr1_1:56304614-56304633 | None:intergenic | 25.0% |
| !!! | GTTTCTTAATTTGTATTTGG+TGG | - | chr1_1:56304650-56304669 | None:intergenic | 25.0% |
| ! | AAATAAAAGACATCCGAATA+TGG | + | chr1_1:56304715-56304734 | Msa0030210:intron | 25.0% |
| !! | CTAAGCACATATATCATTTT+TGG | + | chr1_1:56305025-56305044 | Msa0030210:intron | 25.0% |
| !!! | AATTTTTAATTTGTGCTGCT+TGG | - | chr1_1:56305079-56305098 | None:intergenic | 25.0% |
| !!! | TATATATATATAAGGGCATC+AGG | + | chr1_1:56305310-56305329 | Msa0030210:intron | 25.0% |
| !!! | ATATATATATAAGGGCATCA+GGG | + | chr1_1:56305311-56305330 | Msa0030210:intron | 25.0% |
| ! | TCATTAATTATATTTGCGCA+TGG | + | chr1_1:56305354-56305373 | Msa0030210:intron | 25.0% |
| ! | TAAGTTATGAATTCTTCCAA+TGG | - | chr1_1:56305620-56305639 | None:intergenic | 25.0% |
| !!! | AGTGAAGAGAATATTTTAAG+TGG | - | chr1_1:56305636-56305655 | None:intergenic | 25.0% |
| !! | AATATTTGAAGTGGAAAACA+TGG | - | chr1_1:56305734-56305753 | None:intergenic | 25.0% |
| ! | TGAAACAGTGAATCTTAAAA+AGG | + | chr1_1:56306005-56306024 | Msa0030210:intron | 25.0% |
| ! | AAGATTTGATATCAAGTGAA+TGG | - | chr1_1:56306046-56306065 | None:intergenic | 25.0% |
| !!! | CAGATTTTATGTCTTTGTTT+TGG | - | chr1_1:56306136-56306155 | None:intergenic | 25.0% |
| ! | TCATTCAAAAATTGATCTGA+TGG | - | chr1_1:56306600-56306619 | None:intergenic | 25.0% |
| !! | CAGATCAATTTTTGAATGAA+TGG | + | chr1_1:56306601-56306620 | Msa0030210:intron | 25.0% |
| ! | TCAAATCCATGTATAAATAG+AGG | - | chr1_1:56306660-56306679 | None:intergenic | 25.0% |
| ! | TCTATTTATACATGGATTTG+AGG | + | chr1_1:56306659-56306678 | Msa0030210:intron | 25.0% |
| ! | AGTTGAAGCATGAATTTAAT+TGG | + | chr1_1:56306707-56306726 | Msa0030210:intron | 25.0% |
| ! | GTTGAAGCATGAATTTAATT+GGG | + | chr1_1:56306708-56306727 | Msa0030210:intron | 25.0% |
| ! | TTGAAGCATGAATTTAATTG+GGG | + | chr1_1:56306709-56306728 | Msa0030210:intron | 25.0% |
| !!! | AAGTCTGGCTTTAATAATAA+AGG | + | chr1_1:56306889-56306908 | Msa0030210:intron | 25.0% |
| ! | ACCTATTAAATTTCAGATTC+TGG | + | chr1_1:56306948-56306967 | Msa0030210:intron | 25.0% |
| !! | ACCAGAATCTGAAATTTAAT+AGG | - | chr1_1:56306952-56306971 | None:intergenic | 25.0% |
| ! | AGATATGATTCAATATCTGA+AGG | + | chr1_1:56307403-56307422 | Msa0030210:CDS | 25.0% |
| ! | AAGATACACCATAGTATAAT+TGG | + | chr1_1:56307466-56307485 | Msa0030210:intron | 25.0% |
| ! | TACATGGTATTATATTCCAA+AGG | - | chr1_1:56307493-56307512 | None:intergenic | 25.0% |
| ! | TTGTATCGTATAATTCTAGA+TGG | + | chr1_1:56307818-56307837 | Msa0030210:CDS | 25.0% |
| !!! | TATTATTCTTTTGAAGTTGC+AGG | + | chr1_1:56307880-56307899 | Msa0030210:CDS | 25.0% |
| ! | GTATATTTCCATAAGTGTAA+TGG | + | chr1_1:56307987-56308006 | Msa0030210:intron | 25.0% |
| !! | TTGTAAACGTTTCTAAAGAA+CGG | - | chr1_1:56308349-56308368 | None:intergenic | 25.0% |
| ! | ATCTGTCCATATAACTATTA+AGG | + | chr1_1:56308824-56308843 | Msa0030210:intron | 25.0% |
| ! | ATTAAGACCTCATTCTTAAA+TGG | + | chr1_1:56309212-56309231 | Msa0030210:three_prime_UTR | 25.0% |
| ! | TTAAGACCTCATTCTTAAAT+GGG | + | chr1_1:56309213-56309232 | Msa0030210:three_prime_UTR | 25.0% |
| ! | CTCTAACAAAAGGTTTAATT+GGG | - | chr1_1:56309319-56309338 | None:intergenic | 25.0% |
| ! | AAGAATGAATTTGAGTTCCA+TGG | - | chr1_1:56303870-56303889 | None:intergenic | 30.0% |
| ! | CTAGATCCTTTTGGTATTAT+AGG | + | chr1_1:56304605-56304624 | Msa0030210:intron | 30.0% |
| !! | TTGTATTTGGTGGAGATTTT+AGG | - | chr1_1:56304640-56304659 | None:intergenic | 30.0% |
| ACATTTGCACATTGAAAGTT+TGG | + | chr1_1:56304791-56304810 | Msa0030210:intron | 30.0% | |
| AAAGTTTGGACATCAAAAGT+TGG | + | chr1_1:56304805-56304824 | Msa0030210:intron | 30.0% | |
| CATATGTTGCTAATCAATCA+AGG | - | chr1_1:56304964-56304983 | None:intergenic | 30.0% | |
| TATGAATTCTTCCAATGGAA+TGG | - | chr1_1:56305615-56305634 | None:intergenic | 30.0% | |
| AGTGAAGAGAATATTTGAAG+TGG | - | chr1_1:56305743-56305762 | None:intergenic | 30.0% | |
| TAACACGATATACACTAACA+TGG | + | chr1_1:56305831-56305850 | Msa0030210:intron | 30.0% | |
| TAAATACCATAAACCATGCT+TGG | - | chr1_1:56305904-56305923 | None:intergenic | 30.0% | |
| !!! | AAACGTGACTGCATTTTTTT+TGG | + | chr1_1:56305923-56305942 | Msa0030210:intron | 30.0% |
| !!! | TTTTGAAGTCTTCTTTCAAG+TGG | - | chr1_1:56306078-56306097 | None:intergenic | 30.0% |
| !!! | GTTTTGAAGCATTTAGACAT+TGG | - | chr1_1:56306162-56306181 | None:intergenic | 30.0% |
| TCTAAATGCTTCAAAACAGA+TGG | + | chr1_1:56306165-56306184 | Msa0030210:intron | 30.0% | |
| CTAAATGCTTCAAAACAGAT+GGG | + | chr1_1:56306166-56306185 | Msa0030210:intron | 30.0% | |
| TTCTTTCTCAACTTAATGCA+GGG | - | chr1_1:56306258-56306277 | None:intergenic | 30.0% | |
| TTTCTTTCTCAACTTAATGC+AGG | - | chr1_1:56306259-56306278 | None:intergenic | 30.0% | |
| GTGAGTGACTTTAAACAAAT+AGG | + | chr1_1:56306296-56306315 | Msa0030210:intron | 30.0% | |
| CACAAAAAGTTCTGTATCTA+AGG | + | chr1_1:56306368-56306387 | Msa0030210:intron | 30.0% | |
| GGAATTTCGGATTGAAATTA+GGG | + | chr1_1:56306848-56306867 | Msa0030210:intron | 30.0% | |
| TTAGACTACAAAATTCTGAG+TGG | + | chr1_1:56306992-56307011 | Msa0030210:intron | 30.0% | |
| TGAAATGCTGGAATTATGTT+TGG | - | chr1_1:56307167-56307186 | None:intergenic | 30.0% | |
| ! | AGTGTCTATATTTGAAATGC+TGG | - | chr1_1:56307179-56307198 | None:intergenic | 30.0% |
| AAATCCAAACACGAACAAAT+AGG | + | chr1_1:56307204-56307223 | Msa0030210:intron | 30.0% | |
| !!! | TGACAGAGTTTTGATTTTTC+AGG | + | chr1_1:56307282-56307301 | Msa0030210:intron | 30.0% |
| !!! | TTTTCAGGTACATATATCTC+TGG | + | chr1_1:56307297-56307316 | Msa0030210:intron | 30.0% |
| TCACCTTCATTTGTAGAATA+TGG | + | chr1_1:56307367-56307386 | Msa0030210:CDS | 30.0% | |
| GTTCCATATTCTACAAATGA+AGG | - | chr1_1:56307373-56307392 | None:intergenic | 30.0% | |
| GATATTGAATCATATCTACC+AGG | - | chr1_1:56307400-56307419 | None:intergenic | 30.0% | |
| !! | ACCATGTATTTTTATCGATG+TGG | + | chr1_1:56307505-56307524 | Msa0030210:intron | 30.0% |
| !! | ATGTATTTTTATCGATGTGG+CGG | + | chr1_1:56307508-56307527 | Msa0030210:intron | 30.0% |
| GTAATTGGAAATTTAGATGG+AGG | - | chr1_1:56307562-56307581 | None:intergenic | 30.0% | |
| !! | ATTTCCAATTACTTTTGCTG+TGG | + | chr1_1:56307570-56307589 | Msa0030210:CDS | 30.0% |
| ATATGATGTTTACCTTCTTC+CGG | + | chr1_1:56307654-56307673 | Msa0030210:CDS | 30.0% | |
| TGATTGTATGCAACATCTTT+GGG | + | chr1_1:56307693-56307712 | Msa0030210:CDS | 30.0% | |
| ! | ACAAATTCATCGGTTAACAA+TGG | - | chr1_1:56307802-56307821 | None:intergenic | 30.0% |
| TCATATAAGTGCTTATGTGT+GGG | + | chr1_1:56308091-56308110 | Msa0030210:intron | 30.0% | |
| TTTCTTCATTTCTCATCTAC+AGG | + | chr1_1:56308371-56308390 | Msa0030210:intron | 30.0% | |
| !! | AATGGAAATTTGGTCTTAAG+TGG | + | chr1_1:56308630-56308649 | Msa0030210:intron | 30.0% |
| ATCACCAATAGTTATATGGA+CGG | - | chr1_1:56308712-56308731 | None:intergenic | 30.0% | |
| CAACAATGATGTAAGAATAC+AGG | - | chr1_1:56308872-56308891 | None:intergenic | 30.0% | |
| !! | CTTACATCATTGTTGTTTAC+AGG | + | chr1_1:56308877-56308896 | Msa0030210:intron | 30.0% |
| ! | TGATAATGACGAGTCAATTA+AGG | + | chr1_1:56309007-56309026 | Msa0030210:CDS | 30.0% |
| ATTAGGTACCAAGTCTTAAA+TGG | - | chr1_1:56309137-56309156 | None:intergenic | 30.0% | |
| ! | TTTAAGACTTGGTACCTAAT+AGG | + | chr1_1:56309137-56309156 | Msa0030210:CDS | 30.0% |
| !!! | TCACTTTTTTTTCCCACAAT+GGG | - | chr1_1:56309167-56309186 | None:intergenic | 30.0% |
| ATTGTGGGAAAAAAAAGTGA+GGG | + | chr1_1:56309167-56309186 | Msa0030210:CDS | 30.0% | |
| CCTCTAACAAAAGGTTTAAT+TGG | - | chr1_1:56309320-56309339 | None:intergenic | 30.0% | |
| ! | CCAATTAAACCTTTTGTTAG+AGG | + | chr1_1:56309317-56309336 | Msa0030210:three_prime_UTR | 30.0% |
| AATAGAGATCCTCTAACAAA+AGG | - | chr1_1:56309329-56309348 | None:intergenic | 30.0% | |
| ! | TTTTGTTAGAGGATCTCTAT+TGG | + | chr1_1:56309328-56309347 | Msa0030210:three_prime_UTR | 30.0% |
| TAAAAAGTGATGTGTCAATG+TGG | + | chr1_1:56309392-56309411 | Msa0030210:three_prime_UTR | 30.0% | |
| AAAAAGTGATGTGTCAATGT+GGG | + | chr1_1:56309393-56309412 | Msa0030210:three_prime_UTR | 30.0% | |
| !! | TCATCTTTGAGGTCTTAAAT+GGG | - | chr1_1:56309420-56309439 | None:intergenic | 30.0% |
| GACATGACATGAATCTATTA+GGG | - | chr1_1:56309472-56309491 | None:intergenic | 30.0% | |
| AGACATGACATGAATCTATT+AGG | - | chr1_1:56309473-56309492 | None:intergenic | 30.0% | |
| ! | GTATATATACTCTAAGGACT+TGG | + | chr1_1:56309567-56309586 | Msa0030210:three_prime_UTR | 30.0% |
| GACTTGGAATTGTTTGTAAA+TGG | + | chr1_1:56309583-56309602 | Msa0030210:three_prime_UTR | 30.0% | |
| GTATTACAGTAACTAGTGGA+AGG | - | chr1_1:56303829-56303848 | None:intergenic | 35.0% | |
| TTGGGTATTACAGTAACTAG+TGG | - | chr1_1:56303833-56303852 | None:intergenic | 35.0% | |
| ! | ATGGTGATGTTGTCAAAGTT+GGG | - | chr1_1:56303851-56303870 | None:intergenic | 35.0% |
| AACATATTGATCAGCAGTGA+CGG | - | chr1_1:56303930-56303949 | None:intergenic | 35.0% | |
| CATTAAAATGCGTGTTAGCT+GGG | - | chr1_1:56304287-56304306 | None:intergenic | 35.0% | |
| TCATTAAAATGCGTGTTAGC+TGG | - | chr1_1:56304288-56304307 | None:intergenic | 35.0% | |
| TCATATGCTTAGCTTACTCT+CGG | - | chr1_1:56304891-56304910 | None:intergenic | 35.0% | |
| CAATCAAGGAATTTGCAGAA+AGG | - | chr1_1:56304950-56304969 | None:intergenic | 35.0% | |
| !! | TTGTGCTGCTTGGATATAAA+AGG | - | chr1_1:56305069-56305088 | None:intergenic | 35.0% |
| TTGTCAACAGAAGATCTTTC+TGG | + | chr1_1:56305097-56305116 | Msa0030210:intron | 35.0% | |
| ! | TCTGCGTTTTACATTGCTAA+TGG | - | chr1_1:56305497-56305516 | None:intergenic | 35.0% |
| AAGTTTGTCTACCATTCCAT+TGG | + | chr1_1:56305601-56305620 | Msa0030210:intron | 35.0% | |
| CATTACTAACATCCTTAGCA+TGG | + | chr1_1:56306338-56306357 | Msa0030210:intron | 35.0% | |
| !! | ACTTGATAATGTCACCATGT+TGG | - | chr1_1:56306551-56306570 | None:intergenic | 35.0% |
| TCAAAAATTGATCTGATGGC+AGG | - | chr1_1:56306596-56306615 | None:intergenic | 35.0% | |
| AATGAATGGATGATTGATGC+AGG | + | chr1_1:56306615-56306634 | Msa0030210:intron | 35.0% | |
| !! | TGATGCAGGAAAAAAGCATT+AGG | + | chr1_1:56306629-56306648 | Msa0030210:intron | 35.0% |
| !! | GATGCAGGAAAAAAGCATTA+GGG | + | chr1_1:56306630-56306649 | Msa0030210:intron | 35.0% |
| ! | GCGAAATTAATGCAGGTTTT+GGG | + | chr1_1:56306823-56306842 | Msa0030210:intron | 35.0% |
| !!! | AAATTAATGCAGGTTTTGGG+AGG | + | chr1_1:56306826-56306845 | Msa0030210:intron | 35.0% |
| !!! | AATTAATGCAGGTTTTGGGA+GGG | + | chr1_1:56306827-56306846 | Msa0030210:intron | 35.0% |
| GGGAATTTCGGATTGAAATT+AGG | + | chr1_1:56306847-56306866 | Msa0030210:intron | 35.0% | |
| AATGCCTATTTGTTCGTGTT+TGG | - | chr1_1:56307211-56307230 | None:intergenic | 35.0% | |
| ACACGAACAAATAGGCATTA+TGG | + | chr1_1:56307212-56307231 | Msa0030210:intron | 35.0% | |
| CACGAACAAATAGGCATTAT+GGG | + | chr1_1:56307213-56307232 | Msa0030210:intron | 35.0% | |
| TTCTGTACATCTAAGCAGAA+TGG | + | chr1_1:56307241-56307260 | Msa0030210:intron | 35.0% | |
| ATGTTTGTCATCAGTTATCC+AGG | - | chr1_1:56307347-56307366 | None:intergenic | 35.0% | |
| GTAGAATATGGAACATTACC+TGG | + | chr1_1:56307379-56307398 | Msa0030210:CDS | 35.0% | |
| CCAAAGGTCCAATTATACTA+TGG | - | chr1_1:56307477-56307496 | None:intergenic | 35.0% | |
| CCATAGTATAATTGGACCTT+TGG | + | chr1_1:56307474-56307493 | Msa0030210:intron | 35.0% | |
| GCCACATCGATAAAAATACA+TGG | - | chr1_1:56307509-56307528 | None:intergenic | 35.0% | |
| TGGTTGGACTAAATCAACAT+TGG | + | chr1_1:56307612-56307631 | Msa0030210:CDS | 35.0% | |
| TATGATGTTTACCTTCTTCC+GGG | + | chr1_1:56307655-56307674 | Msa0030210:CDS | 35.0% | |
| CTGATTGTATGCAACATCTT+TGG | + | chr1_1:56307692-56307711 | Msa0030210:CDS | 35.0% | |
| AACAGAAGGAAATCATGAAG+AGG | + | chr1_1:56307768-56307787 | Msa0030210:CDS | 35.0% | |
| GTGTTCATGTTATCATGCTA+GGG | + | chr1_1:56307902-56307921 | Msa0030210:CDS | 35.0% | |
| ATCCATCATACATGTGCTAA+AGG | + | chr1_1:56308011-56308030 | Msa0030210:intron | 35.0% | |
| AACCTTTAGCACATGTATGA+TGG | - | chr1_1:56308016-56308035 | None:intergenic | 35.0% | |
| ATGTGCTAAAGGTTTAGACT+AGG | + | chr1_1:56308022-56308041 | Msa0030210:intron | 35.0% | |
| GTTTAGACTAGGATTCTGTT+TGG | + | chr1_1:56308033-56308052 | Msa0030210:intron | 35.0% | |
| CACATAAGCACTTATATGAC+AGG | - | chr1_1:56308090-56308109 | None:intergenic | 35.0% | |
| GTCATATAAGTGCTTATGTG+TGG | + | chr1_1:56308090-56308109 | Msa0030210:intron | 35.0% | |
| AAGCTAACTTGAAGAGCTTA+TGG | + | chr1_1:56308174-56308193 | Msa0030210:intron | 35.0% | |
| AGACTGTTTGGTAGAGTTTA+TGG | - | chr1_1:56308240-56308259 | None:intergenic | 35.0% | |
| TAAACACTAGTGAGACTGTT+TGG | - | chr1_1:56308252-56308271 | None:intergenic | 35.0% | |
| CTCAAATAAGTCAACCCAAA+CGG | + | chr1_1:56308286-56308305 | Msa0030210:intron | 35.0% | |
| TCAAATAAGTCAACCCAAAC+GGG | + | chr1_1:56308287-56308306 | Msa0030210:intron | 35.0% | |
| TTGTTATCAAATGCCCGTTT+GGG | - | chr1_1:56308303-56308322 | None:intergenic | 35.0% | |
| ! | TTTGTTATCAAATGCCCGTT+TGG | - | chr1_1:56308304-56308323 | None:intergenic | 35.0% |
| ! | GCCTTGTTACTATTATACCA+CGG | - | chr1_1:56308456-56308475 | None:intergenic | 35.0% |
| AATTTCTAAGCACGGTTCAA+TGG | + | chr1_1:56308612-56308631 | Msa0030210:intron | 35.0% | |
| GTCCATATAACTATTGGTGA+TGG | + | chr1_1:56308711-56308730 | Msa0030210:intron | 35.0% | |
| CACCATCACCAATAGTTATA+TGG | - | chr1_1:56308716-56308735 | None:intergenic | 35.0% | |
| !! | CATATAACTATTGGTGATGG+TGG | + | chr1_1:56308714-56308733 | Msa0030210:intron | 35.0% |
| ACATATATCCACAACCAAAG+TGG | + | chr1_1:56308901-56308920 | Msa0030210:CDS | 35.0% | |
| AGAGGTTATCCAGATATCAT+CGG | - | chr1_1:56309033-56309052 | None:intergenic | 35.0% | |
| TGATATCTGGATAACCTCTT+TGG | + | chr1_1:56309034-56309053 | Msa0030210:CDS | 35.0% | |
| ATAAGAACAAACATGAGCTC+AGG | + | chr1_1:56309075-56309094 | Msa0030210:CDS | 35.0% | |
| !!! | ACTTTTTTTTCCCACAATGG+GGG | - | chr1_1:56309165-56309184 | None:intergenic | 35.0% |
| !!! | CACTTTTTTTTCCCACAATG+GGG | - | chr1_1:56309166-56309185 | None:intergenic | 35.0% |
| !!! | CTCACTTTTTTTTCCCACAA+TGG | - | chr1_1:56309168-56309187 | None:intergenic | 35.0% |
| CATTGTGGGAAAAAAAAGTG+AGG | + | chr1_1:56309166-56309185 | Msa0030210:CDS | 35.0% | |
| !! | CTCATCTTTGAGGTCTTAAA+TGG | - | chr1_1:56309421-56309440 | None:intergenic | 35.0% |
| TACAGTAACTAGTGGAAGGA+AGG | - | chr1_1:56303825-56303844 | None:intergenic | 40.0% | |
| ! | CATGGTGATGTTGTCAAAGT+TGG | - | chr1_1:56303852-56303871 | None:intergenic | 40.0% |
| CAACTTTGACAACATCACCA+TGG | + | chr1_1:56303850-56303869 | Msa0030210:CDS | 40.0% | |
| ACTTAAACATTCCATGGCCA+TGG | + | chr1_1:56303969-56303988 | Msa0030210:CDS | 40.0% | |
| CTTAAACATTCCATGGCCAT+GGG | + | chr1_1:56303970-56303989 | Msa0030210:CDS | 40.0% | |
| AAGAGAGTTTGACCTGTTGA+GGG | - | chr1_1:56304015-56304034 | None:intergenic | 40.0% | |
| AAAGAGAGTTTGACCTGTTG+AGG | - | chr1_1:56304016-56304035 | None:intergenic | 40.0% | |
| CGATTAATTCTTTGCGGCTT+TGG | - | chr1_1:56304565-56304584 | None:intergenic | 40.0% | |
| AAGCCGCAAAGAATTAATCG+TGG | + | chr1_1:56304565-56304584 | Msa0030210:intron | 40.0% | |
| ACGCCACGATTAATTCTTTG+CGG | - | chr1_1:56304571-56304590 | None:intergenic | 40.0% | |
| ! | ATCTCTGGTCTAGATCCTTT+TGG | + | chr1_1:56304596-56304615 | Msa0030210:intron | 40.0% |
| CTCGGAAATTAGCACATCTA+AGG | - | chr1_1:56304873-56304892 | None:intergenic | 40.0% | |
| GATGCTTGAACAGTGAGTTA+AGG | - | chr1_1:56305555-56305574 | None:intergenic | 40.0% | |
| TCCATATTGATCTCCAAGCA+TGG | + | chr1_1:56305888-56305907 | Msa0030210:intron | 40.0% | |
| ACCATGCTTGGAGATCAATA+TGG | - | chr1_1:56305892-56305911 | None:intergenic | 40.0% | |
| TGATCTCCAAGCATGGTTTA+TGG | + | chr1_1:56305895-56305914 | Msa0030210:intron | 40.0% | |
| !! | ACTGATTTTGGTGCGCAAAT+TGG | - | chr1_1:56306207-56306226 | None:intergenic | 40.0% |
| !!! | GGGCATATTGTCACTGATTT+TGG | - | chr1_1:56306219-56306238 | None:intergenic | 40.0% |
| AAATCAGTGACAATATGCCC+AGG | + | chr1_1:56306219-56306238 | Msa0030210:intron | 40.0% | |
| TTGTGTTGAGTTCCATGCTA+AGG | - | chr1_1:56306353-56306372 | None:intergenic | 40.0% | |
| ! | AAGTTCTGTATCTAAGGCGT+AGG | + | chr1_1:56306374-56306393 | Msa0030210:intron | 40.0% |
| CTTTGTCCATCTCAGTGATT+GGG | + | chr1_1:56306407-56306426 | Msa0030210:intron | 40.0% | |
| TTGGATTTGCATTGCTTGAG+GGG | - | chr1_1:56306532-56306551 | None:intergenic | 40.0% | |
| GTTGGATTTGCATTGCTTGA+GGG | - | chr1_1:56306533-56306552 | None:intergenic | 40.0% | |
| TGTTGGATTTGCATTGCTTG+AGG | - | chr1_1:56306534-56306553 | None:intergenic | 40.0% | |
| CAAGCAATGCAAATCCAACA+TGG | + | chr1_1:56306534-56306553 | Msa0030210:intron | 40.0% | |
| GGCAGACCTCTATTTATACA+TGG | + | chr1_1:56306651-56306670 | Msa0030210:intron | 40.0% | |
| TGCAAAATCACTTGCAGCAT+GGG | + | chr1_1:56306755-56306774 | Msa0030210:intron | 40.0% | |
| TGATAGGGCGAAATTAATGC+AGG | + | chr1_1:56306816-56306835 | Msa0030210:intron | 40.0% | |
| ! | GGCGAAATTAATGCAGGTTT+TGG | + | chr1_1:56306822-56306841 | Msa0030210:intron | 40.0% |
| TCTAAGCAGAATGGTTGTCT+TGG | + | chr1_1:56307250-56307269 | Msa0030210:intron | 40.0% | |
| ! | AGAATGGTTGTCTTGGTTTG+AGG | + | chr1_1:56307257-56307276 | Msa0030210:intron | 40.0% |
| ACAGACACATGAGAATAACC+TGG | + | chr1_1:56307326-56307345 | Msa0030210:CDS | 40.0% | |
| !!! | AGGAGTTTTGAGCTTGAACT+CGG | - | chr1_1:56307542-56307561 | None:intergenic | 40.0% |
| TCAGCATATGAAAGATCACC+CGG | - | chr1_1:56307676-56307695 | None:intergenic | 40.0% | |
| TTTCCTTCTGTTACCATCCA+CGG | - | chr1_1:56307760-56307779 | None:intergenic | 40.0% | |
| ! | TAGATGGAAAATGCCGTTTG+AGG | + | chr1_1:56307834-56307853 | Msa0030210:CDS | 40.0% |
| ! | AAAATGCCGTTTGAGGAAAG+TGG | + | chr1_1:56307841-56307860 | Msa0030210:CDS | 40.0% |
| GTTGATCCACTTTCCTCAAA+CGG | - | chr1_1:56307850-56307869 | None:intergenic | 40.0% | |
| GGTGTTCATGTTATCATGCT+AGG | + | chr1_1:56307901-56307920 | Msa0030210:CDS | 40.0% | |
| AGTACTCAGAGCAATACAGA+TGG | + | chr1_1:56307944-56307963 | Msa0030210:CDS | 40.0% | |
| AGAGCAATACAGATGGCTAA+AGG | + | chr1_1:56307951-56307970 | Msa0030210:CDS | 40.0% | |
| GATGGATCCCATTACACTTA+TGG | - | chr1_1:56307998-56308017 | None:intergenic | 40.0% | |
| ! | CGGGCATTTGATAACAAACA+TGG | + | chr1_1:56308306-56308325 | Msa0030210:intron | 40.0% |
| TCTACAGGAAGATCTGTCAA+AGG | + | chr1_1:56308386-56308405 | Msa0030210:intron | 40.0% | |
| TGAAATAACACAAGCAGCCA+AGG | - | chr1_1:56308429-56308448 | None:intergenic | 40.0% | |
| GCCGTGGTATAATAGTAACA+AGG | + | chr1_1:56308452-56308471 | Msa0030210:CDS | 40.0% | |
| AATAGTAACAAGGCTCACCA+AGG | + | chr1_1:56308462-56308481 | Msa0030210:CDS | 40.0% | |
| GGATGATATGATGACAGTCA+TGG | + | chr1_1:56308491-56308510 | Msa0030210:CDS | 40.0% | |
| AGCAAGAACTAAATCAACGC+TGG | - | chr1_1:56308535-56308554 | None:intergenic | 40.0% | |
| !! | AGCGTTGATTTAGTTCTTGC+TGG | + | chr1_1:56308534-56308553 | Msa0030210:CDS | 40.0% |
| AGCACGGTTCAATGGAAATT+TGG | + | chr1_1:56308620-56308639 | Msa0030210:intron | 40.0% | |
| TGACAGAAACGCGTGTATAA+TGG | + | chr1_1:56308666-56308685 | Msa0030210:intron | 40.0% | |
| ! | ACGCGTGTATAATGGAAGAT+TGG | + | chr1_1:56308674-56308693 | Msa0030210:intron | 40.0% |
| AATGGAAGATTGGATCCTTG+TGG | + | chr1_1:56308684-56308703 | Msa0030210:intron | 40.0% | |
| AATTCTGACCACTTTGGTTG+TGG | - | chr1_1:56308912-56308931 | None:intergenic | 40.0% | |
| TAAACTCAAGTCATGCCTTC+TGG | + | chr1_1:56308970-56308989 | Msa0030210:CDS | 40.0% | |
| CAATTAAGGCCGATGATATC+TGG | + | chr1_1:56309021-56309040 | Msa0030210:CDS | 40.0% | |
| ATAACCTCTTTGGTAAGCTC+AGG | + | chr1_1:56309044-56309063 | Msa0030210:CDS | 40.0% | |
| ! | CATGCTTAGAGCATCTACAA+TGG | + | chr1_1:56309100-56309119 | Msa0030210:CDS | 40.0% |
| ! | TTAGAGCATCTACAATGGTG+AGG | + | chr1_1:56309105-56309124 | Msa0030210:CDS | 40.0% |
| ! | GGTCTTCACCATTTAAGACT+TGG | + | chr1_1:56309126-56309145 | Msa0030210:CDS | 40.0% |
| TGAGGGTCTTAAAAGATGCA+AGG | + | chr1_1:56309184-56309203 | Msa0030210:CDS | 40.0% | |
| GGAGTGATTGAGTACCTATT+AGG | + | chr1_1:56309349-56309368 | Msa0030210:three_prime_UTR | 40.0% | |
| AATGGAGACTCTCATCTTTG+AGG | - | chr1_1:56309431-56309450 | None:intergenic | 40.0% | |
| AAAGATGAGAGTCTCCATTG+TGG | + | chr1_1:56309432-56309451 | Msa0030210:three_prime_UTR | 40.0% | |
| !! | TGTCATAAGAGCATCCACAA+TGG | - | chr1_1:56309449-56309468 | None:intergenic | 40.0% |
| ATTCATGTCATGTCTGCTAC+AGG | + | chr1_1:56309478-56309497 | Msa0030210:three_prime_UTR | 40.0% | |
| AACTAGTGGAAGGAAGGAAG+AGG | - | chr1_1:56303819-56303838 | None:intergenic | 45.0% | |
| ! | GATTTAGAATCCCATGGCCA+TGG | - | chr1_1:56303983-56304002 | None:intergenic | 45.0% |
| ! | GGTTGGGATTTAGAATCCCA+TGG | - | chr1_1:56303989-56304008 | None:intergenic | 45.0% |
| AGTTTGACCTGTTGAGGGTA+AGG | - | chr1_1:56304010-56304029 | None:intergenic | 45.0% | |
| ATCGTGGCGTTAACAATCTC+TGG | + | chr1_1:56304581-56304600 | Msa0030210:intron | 45.0% | |
| GATGTATTTGCACAGCTGAC+AGG | - | chr1_1:56305422-56305441 | None:intergenic | 45.0% | |
| GCTTTGTCCATCTCAGTGAT+TGG | + | chr1_1:56306406-56306425 | Msa0030210:intron | 45.0% | |
| TCCATCTCAGTGATTGGGTT+TGG | + | chr1_1:56306412-56306431 | Msa0030210:intron | 45.0% | |
| TCCAAACCCAATCACTGAGA+TGG | - | chr1_1:56306416-56306435 | None:intergenic | 45.0% | |
| GACTTGAATGAACTGATGGC+AGG | - | chr1_1:56306574-56306593 | None:intergenic | 45.0% | |
| GCAGGACTTGAATGAACTGA+TGG | - | chr1_1:56306578-56306597 | None:intergenic | 45.0% | |
| GGGGAGTTGTAGAGTCATTT+CGG | + | chr1_1:56306728-56306747 | Msa0030210:intron | 45.0% | |
| GGGAGTTGTAGAGTCATTTC+GGG | + | chr1_1:56306729-56306748 | Msa0030210:intron | 45.0% | |
| GGAGTTGTAGAGTCATTTCG+GGG | + | chr1_1:56306730-56306749 | Msa0030210:intron | 45.0% | |
| CTGCAAAATCACTTGCAGCA+TGG | + | chr1_1:56306754-56306773 | Msa0030210:intron | 45.0% | |
| AAAATCACTTGCAGCATGGG+AGG | + | chr1_1:56306758-56306777 | Msa0030210:intron | 45.0% | |
| ! | ATTGAAAGCACGTGTTTCCC+AGG | + | chr1_1:56306784-56306803 | Msa0030210:intron | 45.0% |
| !!! | CAGGTTTTGGGAGGGAATTT+CGG | + | chr1_1:56306835-56306854 | Msa0030210:intron | 45.0% |
| TAAAGCCAGACTTGATGTGC+TGG | - | chr1_1:56306882-56306901 | None:intergenic | 45.0% | |
| CAGGTACATATATCTCTGGC+AGG | + | chr1_1:56307301-56307320 | Msa0030210:intron | 45.0% | |
| !!! | TTTTATCGATGTGGCGGACA+AGG | + | chr1_1:56307514-56307533 | Msa0030210:intron | 45.0% |
| !!! | GGAGTTTTGAGCTTGAACTC+GGG | - | chr1_1:56307541-56307560 | None:intergenic | 45.0% |
| CCAGCCACAGCAAAAGTAAT+TGG | - | chr1_1:56307577-56307596 | None:intergenic | 45.0% | |
| !! | CCAATTACTTTTGCTGTGGC+TGG | + | chr1_1:56307574-56307593 | Msa0030210:CDS | 45.0% |
| ATGAAAGATCACCCGGAAGA+AGG | - | chr1_1:56307669-56307688 | None:intergenic | 45.0% | |
| !! | CAACATCTTTGGGACTCGTT+TGG | + | chr1_1:56307703-56307722 | Msa0030210:intron | 45.0% |
| !! | ATCTTTGGGACTCGTTTGGT+AGG | + | chr1_1:56307707-56307726 | Msa0030210:intron | 45.0% |
| ACAGGAAGATCTGTCAAAGG+TGG | + | chr1_1:56308389-56308408 | Msa0030210:intron | 45.0% | |
| AAGATCTGTCAAAGGTGGAC+AGG | + | chr1_1:56308394-56308413 | Msa0030210:CDS | 45.0% | |
| TGTCAAAGGTGGACAGGAAA+AGG | + | chr1_1:56308400-56308419 | Msa0030210:CDS | 45.0% | |
| !! | TTGTGTTATTTCACGTGCCG+TGG | + | chr1_1:56308436-56308455 | Msa0030210:CDS | 45.0% |
| GGCACCGTCCATATAACTAT+TGG | + | chr1_1:56308705-56308724 | Msa0030210:intron | 45.0% | |
| TCACGGAATTCTGACCACTT+TGG | - | chr1_1:56308918-56308937 | None:intergenic | 45.0% | |
| ! | GAATTCCGTGAAGCCAGTTT+TGG | + | chr1_1:56308927-56308946 | Msa0030210:CDS | 45.0% |
| ! | CATGACCAAAACTGGCTTCA+CGG | - | chr1_1:56308935-56308954 | None:intergenic | 45.0% |
| ATTCCTATGCCAACTCCAGA+AGG | - | chr1_1:56308988-56309007 | None:intergenic | 45.0% | |
| CTAATAGGTACCCCCATTGT+GGG | + | chr1_1:56309152-56309171 | Msa0030210:CDS | 45.0% | |
| TGTGGGCCCATTTAAGAATG+AGG | - | chr1_1:56309222-56309241 | None:intergenic | 45.0% | |
| !! | TTTATTATTTATCTTATTAT+AGG | - | chr1_1:56304375-56304394 | None:intergenic | 5.0% |
| !! | ATATAAAATATAATTATAAG+AGG | - | chr1_1:56307437-56307456 | None:intergenic | 5.0% |
| !! | TATTAAATAAATAATATTGT+GGG | + | chr1_1:56309292-56309311 | Msa0030210:three_prime_UTR | 5.0% |
| ATCCCAACCTTACCCTCAAC+AGG | + | chr1_1:56304000-56304019 | Msa0030210:CDS | 50.0% | |
| GACCTGTTGAGGGTAAGGTT+GGG | - | chr1_1:56304005-56304024 | None:intergenic | 50.0% | |
| TGACCTGTTGAGGGTAAGGT+TGG | - | chr1_1:56304006-56304025 | None:intergenic | 50.0% | |
| ACTATTACCCGTGCGATGCA+CGG | + | chr1_1:56304452-56304471 | Msa0030210:intron | 50.0% | |
| GTGATTGGGTTTGGATCCAG+TGG | + | chr1_1:56306421-56306440 | Msa0030210:intron | 50.0% | |
| CACGTGTTTCCCAGGTAGTT+GGG | + | chr1_1:56306792-56306811 | Msa0030210:intron | 50.0% | |
| TCCCAGGTAGTTGGGATGAT+AGG | + | chr1_1:56306800-56306819 | Msa0030210:intron | 50.0% | |
| CCCTATCATCCCAACTACCT+GGG | - | chr1_1:56306804-56306823 | None:intergenic | 50.0% | |
| CCCAGGTAGTTGGGATGATA+GGG | + | chr1_1:56306801-56306820 | Msa0030210:intron | 50.0% | |
| GCGATCTTGGTCAAACTGGT+TGG | + | chr1_1:56307596-56307615 | Msa0030210:CDS | 50.0% | |
| TGGACAGGAAAAGGACACCT+TGG | + | chr1_1:56308409-56308428 | Msa0030210:CDS | 50.0% | |
| ACGCTGGCAGCATAAAGCAA+TGG | - | chr1_1:56308519-56308538 | None:intergenic | 50.0% | |
| !! | GTTATATGGACGGTGCCACA+AGG | - | chr1_1:56308702-56308721 | None:intergenic | 50.0% |
| ACCGAGAAGGCTTAGCTCAT+AGG | + | chr1_1:56308739-56308758 | Msa0030210:intron | 50.0% | |
| GCCTATGAGCTAAGCCTTCT+CGG | - | chr1_1:56308743-56308762 | None:intergenic | 50.0% | |
| !! | CGTGAAGCCAGTTTTGGTCA+TGG | + | chr1_1:56308933-56308952 | Msa0030210:CDS | 50.0% |
| CAGCTCACCATGACCAAAAC+TGG | - | chr1_1:56308943-56308962 | None:intergenic | 50.0% | |
| !! | CAAGTCATGCCTTCTGGAGT+TGG | + | chr1_1:56308976-56308995 | Msa0030210:CDS | 50.0% |
| !! | ATGCCTTCTGGAGTTGGCAT+AGG | + | chr1_1:56308982-56309001 | Msa0030210:CDS | 50.0% |
| GCATCCTGAGCTTACCAAAG+AGG | - | chr1_1:56309051-56309070 | None:intergenic | 50.0% | |
| !! | CCACAATGGGGGTACCTATT+AGG | - | chr1_1:56309154-56309173 | None:intergenic | 50.0% |
| CCTAATAGGTACCCCCATTG+TGG | + | chr1_1:56309151-56309170 | Msa0030210:CDS | 50.0% | |
| CTATTACCCGTGCGATGCAC+GGG | + | chr1_1:56304453-56304472 | Msa0030210:intron | 55.0% | |
| TGATTGACCCGTGCATCGCA+CGG | - | chr1_1:56304463-56304482 | None:intergenic | 55.0% | |
| TGTGTTGTGTGCAGCTCCAC+TGG | - | chr1_1:56306440-56306459 | None:intergenic | 55.0% | |
| GCACGTGTTTCCCAGGTAGT+TGG | + | chr1_1:56306791-56306810 | Msa0030210:intron | 55.0% | |
| GCCCTATCATCCCAACTACC+TGG | - | chr1_1:56306805-56306824 | None:intergenic | 55.0% | |
| CACTGCCAGCACATCAAGTC+TGG | + | chr1_1:56306874-56306893 | Msa0030210:intron | 55.0% | |
| ! | TTTGCTGTGGCTGGCGATCT+TGG | + | chr1_1:56307583-56307602 | Msa0030210:CDS | 55.0% |
| GCTGGCGATCTTGGTCAAAC+TGG | + | chr1_1:56307592-56307611 | Msa0030210:CDS | 55.0% | |
| GGACTCGTTTGGTAGGCTTG+TGG | + | chr1_1:56307714-56307733 | Msa0030210:intron | 55.0% | |
| ! | TGGAGCCGTTTGCTAGTGCA+AGG | + | chr1_1:56307734-56307753 | Msa0030210:CDS | 55.0% |
| CACGGCCTTGCACTAGCAAA+CGG | - | chr1_1:56307742-56307761 | None:intergenic | 55.0% | |
| AGGCCGTGGATGGTAACAGA+AGG | + | chr1_1:56307754-56307773 | Msa0030210:CDS | 55.0% | |
| TCATATCATCCCCTGCGCCT+TGG | - | chr1_1:56308482-56308501 | None:intergenic | 55.0% | |
| !! | GGTGATGGTGGAAACCGAGA+AGG | + | chr1_1:56308726-56308745 | Msa0030210:intron | 55.0% |
| GATTGACCCGTGCATCGCAC+GGG | - | chr1_1:56304462-56304481 | None:intergenic | 60.0% | |
| AGGGCGCAGTCATGCTTCCT+GGG | - | chr1_1:56306239-56306258 | None:intergenic | 60.0% | |
| ! | CGTTTGCTAGTGCAAGGCCG+TGG | + | chr1_1:56307740-56307759 | Msa0030210:CDS | 60.0% |
| TGCTAGTGCAAGGCCGTGGA+TGG | + | chr1_1:56307744-56307763 | Msa0030210:CDS | 60.0% | |
| AACAAGGCTCACCAAGGCGC+AGG | + | chr1_1:56308468-56308487 | Msa0030210:CDS | 60.0% | |
| ACAAGGCTCACCAAGGCGCA+GGG | + | chr1_1:56308469-56308488 | Msa0030210:CDS | 60.0% | |
| CAGGGCGCAGTCATGCTTCC+TGG | - | chr1_1:56306240-56306259 | None:intergenic | 65.0% | |
| CAAGGCTCACCAAGGCGCAG+GGG | + | chr1_1:56308470-56308489 | Msa0030210:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 56303773 | 56309634 | 56303773 | ID=Msa0030210;Name=Msa0030210 |
| chr1_1 | mRNA | 56303773 | 56309634 | 56303773 | ID=Msa0030210-mRNA-1;Parent=Msa0030210;Name=Msa0030210-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.28|1|0.5|0.42|7|423|453 |
| chr1_1 | exon | 56303773 | 56304021 | 56303773 | ID=Msa0030210-mRNA-1:exon:16805;Parent=Msa0030210-mRNA-1 |
| chr1_1 | exon | 56307304 | 56307478 | 56307304 | ID=Msa0030210-mRNA-1:exon:16806;Parent=Msa0030210-mRNA-1 |
| chr1_1 | exon | 56307536 | 56307719 | 56307536 | ID=Msa0030210-mRNA-1:exon:16807;Parent=Msa0030210-mRNA-1 |
| chr1_1 | exon | 56307729 | 56307972 | 56307729 | ID=Msa0030210-mRNA-1:exon:16808;Parent=Msa0030210-mRNA-1 |
| chr1_1 | exon | 56308393 | 56308581 | 56308393 | ID=Msa0030210-mRNA-1:exon:16809;Parent=Msa0030210-mRNA-1 |
| chr1_1 | exon | 56308672 | 56308679 | 56308672 | ID=Msa0030210-mRNA-1:exon:16810;Parent=Msa0030210-mRNA-1 |
| chr1_1 | exon | 56308899 | 56309634 | 56308899 | ID=Msa0030210-mRNA-1:exon:16811;Parent=Msa0030210-mRNA-1 |
| chr1_1 | CDS | 56303773 | 56304021 | 56303773 | ID=Msa0030210-mRNA-1:cds;Parent=Msa0030210-mRNA-1 |
| chr1_1 | CDS | 56307304 | 56307478 | 56307304 | ID=Msa0030210-mRNA-1:cds;Parent=Msa0030210-mRNA-1 |
| chr1_1 | CDS | 56307536 | 56307719 | 56307536 | ID=Msa0030210-mRNA-1:cds;Parent=Msa0030210-mRNA-1 |
| chr1_1 | CDS | 56307729 | 56307972 | 56307729 | ID=Msa0030210-mRNA-1:cds;Parent=Msa0030210-mRNA-1 |
| chr1_1 | CDS | 56308393 | 56308581 | 56308393 | ID=Msa0030210-mRNA-1:cds;Parent=Msa0030210-mRNA-1 |
| chr1_1 | CDS | 56308672 | 56308679 | 56308672 | ID=Msa0030210-mRNA-1:cds;Parent=Msa0030210-mRNA-1 |
| chr1_1 | CDS | 56308899 | 56309211 | 56308899 | ID=Msa0030210-mRNA-1:cds;Parent=Msa0030210-mRNA-1 |
| chr1_1 | three_prime_UTR | 56309212 | 56309634 | 56309212 | ID=Msa0030210-mRNA-1:three_prime_utr;Parent=Msa0030210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
