Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077760 | sp|Q9LJU7|PPA18_ARATH | 68.571 | 455 | 125 | 2 | 1 | 455 | 1 | 437 | 0.0 | 673 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077760 | G7K8G7 | 93.626 | 455 | 13 | 2 | 1 | 455 | 1 | 439 | 0.0 | 882 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030210 | Msa0077760 | 0.817990 | 2.476058e-52 | -8.615850e-47 |
| Msa0077760 | Msa0170320 | 0.886771 | 2.558597e-72 | -8.615850e-47 |
| Msa0077760 | Msa0260910 | 0.821320 | 4.297743e-53 | -8.615850e-47 |
| Msa0077760 | Msa0276770 | 0.811463 | 6.913674e-51 | -8.615850e-47 |
| Msa0077760 | Msa0543900 | 0.806574 | 7.700883e-50 | -8.615850e-47 |
| Msa0077760 | Msa0599770 | 0.802679 | 5.002453e-49 | -8.615850e-47 |
| Msa0077760 | Msa0640380 | 0.807223 | 5.612717e-50 | -8.615850e-47 |
| Msa0077760 | Msa0678820 | 0.808599 | 2.861748e-50 | -8.615850e-47 |
| Msa0077760 | Msa0722930 | 0.810884 | 9.232920e-51 | -8.615850e-47 |
| Msa0077760 | Msa0723140 | 0.800625 | 1.319839e-48 | -8.615850e-47 |
| Msa0077760 | Msa0843280 | 0.802329 | 5.907076e-49 | -8.615850e-47 |
| Msa0077760 | Msa0934820 | 0.800949 | 1.133579e-48 | -8.615850e-47 |
| Msa0077760 | Msa1252070 | 0.819933 | 8.952540e-53 | -8.615850e-47 |
| Msa0077760 | Msa1292730 | 0.808643 | 2.799972e-50 | -8.615850e-47 |
| Msa0077760 | Msa1345380 | 0.821021 | 5.037804e-53 | -8.615850e-47 |
| Msa0077760 | Msa1393330 | 0.818870 | 1.564447e-52 | -8.615850e-47 |
| Msa0077760 | Msa1454850 | 0.852397 | 4.743137e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077760 | MtrunA17_Chr5g0443881 | 93.626 | 455 | 13 | 2 | 1 | 455 | 1 | 439 | 0.0 | 882 |
| Msa0077760 | MtrunA17_Chr3g0098721 | 76.116 | 448 | 90 | 2 | 8 | 455 | 3 | 433 | 0.0 | 724 |
| Msa0077760 | MtrunA17_Chr1g0178831 | 65.147 | 373 | 129 | 1 | 67 | 438 | 48 | 420 | 0.0 | 523 |
| Msa0077760 | MtrunA17_Chr7g0266131 | 63.784 | 370 | 133 | 1 | 67 | 435 | 56 | 425 | 0.0 | 515 |
| Msa0077760 | MtrunA17_Chr7g0266151 | 57.590 | 415 | 154 | 5 | 27 | 438 | 27 | 422 | 1.51e-167 | 478 |
| Msa0077760 | MtrunA17_Chr4g0064541 | 40.821 | 414 | 216 | 8 | 67 | 454 | 57 | 467 | 2.75e-96 | 298 |
| Msa0077760 | MtrunA17_Chr4g0019091 | 41.985 | 393 | 200 | 8 | 67 | 432 | 57 | 448 | 3.33e-93 | 289 |
| Msa0077760 | MtrunA17_Chr6g0453731 | 36.190 | 525 | 229 | 13 | 6 | 433 | 12 | 527 | 2.29e-91 | 288 |
| Msa0077760 | MtrunA17_Chr1g0211041 | 41.878 | 394 | 200 | 9 | 67 | 432 | 58 | 450 | 2.37e-90 | 282 |
| Msa0077760 | MtrunA17_Chr3g0121411 | 38.816 | 456 | 186 | 10 | 67 | 432 | 73 | 525 | 1.40e-88 | 280 |
| Msa0077760 | MtrunA17_Chr7g0236041 | 37.445 | 454 | 195 | 9 | 67 | 432 | 72 | 524 | 3.52e-86 | 274 |
| Msa0077760 | MtrunA17_Chr3g0121431 | 38.293 | 457 | 189 | 11 | 67 | 433 | 128 | 581 | 5.58e-86 | 275 |
| Msa0077760 | MtrunA17_Chr4g0019071 | 44.079 | 304 | 151 | 5 | 162 | 446 | 36 | 339 | 6.53e-79 | 248 |
| Msa0077760 | MtrunA17_Chr4g0022251 | 30.650 | 323 | 180 | 9 | 78 | 360 | 231 | 549 | 3.25e-34 | 135 |
| Msa0077760 | MtrunA17_Chr1g0173511 | 29.552 | 335 | 180 | 11 | 78 | 360 | 94 | 424 | 3.54e-32 | 128 |
| Msa0077760 | MtrunA17_Chr4g0043001 | 27.211 | 441 | 240 | 14 | 43 | 404 | 117 | 555 | 3.97e-28 | 117 |
| Msa0077760 | MtrunA17_Chr4g0043021 | 28.571 | 441 | 233 | 18 | 43 | 404 | 118 | 555 | 4.69e-27 | 114 |
| Msa0077760 | MtrunA17_Chr5g0419621 | 26.166 | 386 | 220 | 14 | 85 | 419 | 215 | 586 | 4.93e-22 | 99.0 |
| Msa0077760 | MtrunA17_Chr3g0116051 | 24.249 | 466 | 263 | 18 | 57 | 440 | 159 | 616 | 1.20e-21 | 97.8 |
| Msa0077760 | MtrunA17_Chr4g0057551 | 26.034 | 411 | 225 | 18 | 78 | 421 | 198 | 596 | 7.09e-21 | 95.5 |
| Msa0077760 | MtrunA17_Chr8g0364481 | 26.554 | 354 | 201 | 13 | 121 | 423 | 238 | 583 | 1.78e-20 | 94.4 |
| Msa0077760 | MtrunA17_Chr3g0116091 | 24.048 | 420 | 222 | 15 | 78 | 441 | 35 | 413 | 1.91e-19 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077760 | AT3G20500.1 | 68.571 | 455 | 125 | 2 | 1 | 455 | 1 | 437 | 0.0 | 673 |
| Msa0077760 | AT3G52820.1 | 64.324 | 370 | 131 | 1 | 67 | 435 | 49 | 418 | 3.82e-180 | 511 |
| Msa0077760 | AT3G52810.1 | 54.667 | 450 | 182 | 4 | 2 | 447 | 3 | 434 | 6.46e-172 | 490 |
| Msa0077760 | AT3G52780.1 | 55.430 | 442 | 170 | 9 | 6 | 440 | 4 | 425 | 2.20e-169 | 483 |
| Msa0077760 | AT3G52780.2 | 54.958 | 353 | 133 | 8 | 6 | 352 | 4 | 336 | 1.16e-128 | 377 |
| Msa0077760 | AT5G34850.1 | 40.241 | 415 | 218 | 8 | 67 | 452 | 56 | 469 | 3.34e-96 | 298 |
| Msa0077760 | AT1G56360.1 | 41.206 | 398 | 201 | 10 | 67 | 432 | 52 | 448 | 7.21e-91 | 284 |
| Msa0077760 | AT4G36350.1 | 43.678 | 348 | 173 | 6 | 108 | 432 | 101 | 448 | 8.03e-91 | 283 |
| Msa0077760 | AT3G07130.1 | 40.964 | 415 | 172 | 7 | 91 | 433 | 103 | 516 | 1.43e-88 | 280 |
| Msa0077760 | AT2G16430.2 | 38.326 | 454 | 240 | 13 | 6 | 432 | 12 | 452 | 2.74e-85 | 270 |
| Msa0077760 | AT2G18130.1 | 40.103 | 389 | 195 | 8 | 67 | 432 | 56 | 429 | 1.90e-83 | 264 |
| Msa0077760 | AT2G27190.1 | 39.286 | 392 | 212 | 8 | 67 | 432 | 62 | 453 | 3.13e-83 | 264 |
| Msa0077760 | AT3G07130.2 | 37.946 | 448 | 172 | 8 | 91 | 433 | 103 | 549 | 8.13e-82 | 263 |
| Msa0077760 | AT4G13700.1 | 38.710 | 434 | 205 | 12 | 1 | 378 | 1 | 429 | 5.49e-80 | 255 |
| Msa0077760 | AT2G16430.1 | 42.638 | 326 | 163 | 7 | 131 | 432 | 7 | 332 | 2.08e-76 | 243 |
| Msa0077760 | AT2G32770.3 | 36.524 | 397 | 178 | 6 | 110 | 432 | 138 | 534 | 1.62e-67 | 225 |
| Msa0077760 | AT4G13700.2 | 35.802 | 405 | 199 | 12 | 1 | 349 | 1 | 400 | 8.81e-62 | 206 |
| Msa0077760 | AT2G32770.2 | 35.580 | 371 | 165 | 6 | 110 | 406 | 57 | 427 | 3.12e-59 | 200 |
| Msa0077760 | AT3G46120.1 | 34.550 | 411 | 158 | 13 | 67 | 449 | 56 | 383 | 1.73e-57 | 194 |
| Msa0077760 | AT2G32770.1 | 32.242 | 397 | 166 | 7 | 110 | 432 | 138 | 505 | 8.09e-51 | 180 |
| Msa0077760 | AT1G52940.1 | 40.088 | 227 | 116 | 11 | 67 | 275 | 17 | 241 | 4.97e-33 | 125 |
| Msa0077760 | AT2G03450.1 | 26.269 | 453 | 255 | 15 | 67 | 445 | 145 | 592 | 6.80e-29 | 120 |
| Msa0077760 | AT1G13900.1 | 31.507 | 292 | 158 | 8 | 192 | 445 | 305 | 592 | 9.86e-28 | 117 |
| Msa0077760 | AT5G50400.2 | 26.923 | 260 | 160 | 8 | 186 | 421 | 255 | 508 | 5.90e-20 | 92.8 |
| Msa0077760 | AT5G50400.1 | 25.714 | 350 | 205 | 12 | 121 | 421 | 237 | 580 | 7.31e-20 | 92.8 |
| Msa0077760 | AT1G13750.1 | 26.111 | 360 | 191 | 13 | 121 | 421 | 239 | 582 | 1.36e-18 | 89.0 |
| Msa0077760 | AT4G24890.1 | 27.381 | 252 | 149 | 9 | 186 | 412 | 331 | 573 | 2.03e-18 | 88.6 |
Find 127 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACCACTTCTGATCTTTA+TGG | 0.148058 | 1_2:-54800385 | None:intergenic |
| TCACCTTCATTTGTAGAATA+TGG | 0.176309 | 1_2:+54802052 | Msa0077760:CDS |
| AGACATGACATGAATCTATT+AGG | 0.226505 | 1_2:-54803799 | None:intergenic |
| GACTTGGAATTGTTTGTAAA+TGG | 0.231133 | 1_2:+54803912 | Msa0077760:three_prime_UTR |
| CACCATCACCAATAGTTATA+TGG | 0.252632 | 1_2:-54803398 | None:intergenic |
| AGTAAAGCTAGTAATTTCTT+TGG | 0.259237 | 1_2:+54803942 | Msa0077760:three_prime_UTR |
| AAGATACACCATAGTATAAT+TGG | 0.261358 | 1_2:+54802151 | Msa0077760:CDS |
| CTGATTGTATGCAACATCTT+TGG | 0.275554 | 1_2:+54802377 | Msa0077760:CDS |
| CAGCTCACCATGACCAAAAC+TGG | 0.283751 | 1_2:-54803625 | None:intergenic |
| ATATGATGTTTACCTTCTTC+CGG | 0.295930 | 1_2:+54802339 | Msa0077760:CDS |
| CCAGCCACAGCAAAAGTAAT+TGG | 0.296149 | 1_2:-54802259 | None:intergenic |
| CAATTAAGGCCGATGATATC+TGG | 0.304317 | 1_2:+54803706 | Msa0077760:CDS |
| TAAACTCAACTCATGCCTTC+TGG | 0.320354 | 1_2:+54803655 | Msa0077760:CDS |
| GCCTATGAGCTAAGCCTTCT+CGG | 0.323237 | 1_2:-54803425 | None:intergenic |
| TTTGCTGTGGCTGGCGATCT+TGG | 0.323641 | 1_2:+54802268 | Msa0077760:CDS |
| TATGATGTTTACCTTCTTCC+GGG | 0.355153 | 1_2:+54802340 | Msa0077760:CDS |
| GAATTCCGTGAAGCCAGTTT+TGG | 0.358064 | 1_2:+54803612 | Msa0077760:CDS |
| AAAGTAATTGGAAATTTAGA+TGG | 0.363207 | 1_2:-54802247 | None:intergenic |
| CCATAGTATAATTGGACCTT+TGG | 0.363950 | 1_2:+54802159 | Msa0077760:CDS |
| TTGTATCGTATAATTCTAGA+TGG | 0.365272 | 1_2:+54802503 | Msa0077760:CDS |
| AAGAATATGATGACATCATT+AGG | 0.369279 | 1_2:+54800351 | Msa0077760:five_prime_UTR |
| TGATAATGACGAGTCAATTA+AGG | 0.376333 | 1_2:+54803692 | Msa0077760:CDS |
| TGACAGAAACGCGTGTATAA+TGG | 0.379695 | 1_2:+54803351 | Msa0077760:intron |
| TGATATCTGGATAACCTCTT+TGG | 0.380204 | 1_2:+54803719 | Msa0077760:CDS |
| CCAAAGGTCCAATTATACTA+TGG | 0.391194 | 1_2:-54802159 | None:intergenic |
| TGATTGTATGCAACATCTTT+GGG | 0.398477 | 1_2:+54802378 | Msa0077760:CDS |
| GACATGACATGAATCTATTA+GGG | 0.411709 | 1_2:-54803798 | None:intergenic |
| AGCGTTGATTTAGTTCTTGC+TGG | 0.416104 | 1_2:+54803219 | Msa0077760:CDS |
| CATGGTGATGTTGTCAAAGT+TGG | 0.417007 | 1_2:-54800454 | None:intergenic |
| CAACATCTTTGGGACTCGTT+TGG | 0.426824 | 1_2:+54802388 | Msa0077760:CDS |
| AAGTTGGGTATAACAGTAAC+TGG | 0.428741 | 1_2:-54800438 | None:intergenic |
| AATTCTGACCACTTTGGTTG+TGG | 0.430371 | 1_2:-54803594 | None:intergenic |
| GGTGTTCATGTTATCATGCT+AGG | 0.430528 | 1_2:+54802586 | Msa0077760:CDS |
| ATCCCAACCTTACCCTCAAC+AGG | 0.435642 | 1_2:+54800608 | Msa0077760:CDS |
| AGAATGGTTGTCTTGGTTTG+AGG | 0.438797 | 1_2:+54801942 | Msa0077760:intron |
| AGTTTGACCTGTTGAGGGTA+AGG | 0.448971 | 1_2:-54800615 | None:intergenic |
| CATGACCAAAACTGGCTTCA+CGG | 0.449213 | 1_2:-54803617 | None:intergenic |
| TGTCAAAGGTGGACAGGAAA+AGG | 0.453174 | 1_2:+54803085 | Msa0077760:CDS |
| GCTGGCGATCTTGGTCAAAC+TGG | 0.454476 | 1_2:+54802277 | Msa0077760:CDS |
| GTATATATACTCTAAGGACT+TGG | 0.459869 | 1_2:+54803896 | Msa0077760:three_prime_UTR |
| ATGTTTGTCATCAGTTATCC+AGG | 0.471536 | 1_2:-54802029 | None:intergenic |
| GGCACCGTCCATATAACTAT+TGG | 0.473838 | 1_2:+54803390 | Msa0077760:CDS |
| AACAAGGCTCACCAAGGCGC+AGG | 0.474464 | 1_2:+54803153 | Msa0077760:CDS |
| GACCTGTTGAGGGTAAGGTT+GGG | 0.475250 | 1_2:-54800610 | None:intergenic |
| TGACCTGTTGAGGGTAAGGT+TGG | 0.482503 | 1_2:-54800611 | None:intergenic |
| ACCGAGAAGGCTTAGCTCAT+AGG | 0.485264 | 1_2:+54803424 | Msa0077760:CDS |
| ACGCGTGTATAATGGAAGAT+TGG | 0.486289 | 1_2:+54803359 | Msa0077760:CDS |
| AAAGAGAGTTTGACCTGTTG+AGG | 0.487017 | 1_2:-54800621 | None:intergenic |
| CAACTCATGCCTTCTGGAGT+TGG | 0.487313 | 1_2:+54803661 | Msa0077760:CDS |
| AAGAATGAATTTGAGTTCCA+TGG | 0.488430 | 1_2:-54800472 | None:intergenic |
| AATTATATGTTATATAGCTC+AGG | 0.489483 | 1_2:+54802127 | Msa0077760:CDS |
| TCTAAGCAGAATGGTTGTCT+TGG | 0.489919 | 1_2:+54801935 | Msa0077760:intron |
| GTTGATCCACTTTCCTCAAA+CGG | 0.490751 | 1_2:-54802532 | None:intergenic |
| ACTTAAACATTCCATGGCCA+TGG | 0.491149 | 1_2:+54800577 | Msa0077760:CDS |
| TGTTCATGCTTATGAACGTT+CGG | 0.494726 | 1_2:+54803245 | Msa0077760:CDS |
| TAGATGGAAAATGCCGTTTG+AGG | 0.495189 | 1_2:+54802519 | Msa0077760:CDS |
| ATTCATGTCATGTCTGCTAC+AGG | 0.504002 | 1_2:+54803807 | Msa0077760:three_prime_UTR |
| GTTCCATATTCTACAAATGA+AGG | 0.509529 | 1_2:-54802055 | None:intergenic |
| TCATATCATCCCCTGCGCCT+TGG | 0.511346 | 1_2:-54803164 | None:intergenic |
| AAGAGAGTTTGACCTGTTGA+GGG | 0.512663 | 1_2:-54800620 | None:intergenic |
| AAGATCTGTCAAAGGTGGAC+AGG | 0.518140 | 1_2:+54803079 | Msa0077760:CDS |
| ATGAAAGATCACCCGGAAGA+AGG | 0.520658 | 1_2:-54802351 | None:intergenic |
| GGACTCGTTTGGTAGGCTTG+TGG | 0.525474 | 1_2:+54802399 | Msa0077760:CDS |
| CAGGTACATATATCTCTGGC+AGG | 0.528508 | 1_2:+54801986 | Msa0077760:CDS |
| GCGATCTTGGTCAAACTGGT+TGG | 0.528945 | 1_2:+54802281 | Msa0077760:CDS |
| CACGGCCTTGCACTAGCAAA+CGG | 0.529732 | 1_2:-54802424 | None:intergenic |
| TTTCCTTCTGTTACCATCCA+CGG | 0.529767 | 1_2:-54802442 | None:intergenic |
| ATGGTGATGTTGTCAAAGTT+GGG | 0.531195 | 1_2:-54800453 | None:intergenic |
| ATATAACATATAATTATAAG+AGG | 0.532972 | 1_2:-54802119 | None:intergenic |
| ATGCCTTCTGGAGTTGGCAT+AGG | 0.534697 | 1_2:+54803667 | Msa0077760:CDS |
| TCACGGAATTCTGACCACTT+TGG | 0.536302 | 1_2:-54803600 | None:intergenic |
| ATAAGAACAAACATGAGCTC+AGG | 0.537422 | 1_2:+54803760 | Msa0077760:CDS |
| GTAATTGGAAATTTAGATGG+AGG | 0.539372 | 1_2:-54802244 | None:intergenic |
| GTGTTCATGTTATCATGCTA+GGG | 0.541956 | 1_2:+54802587 | Msa0077760:CDS |
| CTTAAACATTCCATGGCCAT+GGG | 0.543217 | 1_2:+54800578 | Msa0077760:CDS |
| CATATAACTATTGGTGATGG+TGG | 0.543864 | 1_2:+54803399 | Msa0077760:CDS |
| ATAACCTCTTTGGTAAGCTC+AGG | 0.544896 | 1_2:+54803729 | Msa0077760:CDS |
| TGCTAGTGCAAGGCCGTGGA+TGG | 0.546368 | 1_2:+54802429 | Msa0077760:CDS |
| TGGAGCCGTTTGCTAGTGCA+AGG | 0.547738 | 1_2:+54802419 | Msa0077760:CDS |
| TGAAATAACACAAGCAGCCA+AGG | 0.549945 | 1_2:-54803111 | None:intergenic |
| GATTTAGAATCCCATGGCCA+TGG | 0.551935 | 1_2:-54800588 | None:intergenic |
| ATTATACGATACAAATTCAT+CGG | 0.559189 | 1_2:-54802494 | None:intergenic |
| AGAGCAATACAGATGGCTAA+AGG | 0.563220 | 1_2:+54802636 | Msa0077760:CDS |
| ACAAGGCTCACCAAGGCGCA+GGG | 0.565155 | 1_2:+54803154 | Msa0077760:CDS |
| AACAGTAACTGGTGGAAGGA+AGG | 0.566231 | 1_2:-54800427 | None:intergenic |
| CGTTTGCTAGTGCAAGGCCG+TGG | 0.571538 | 1_2:+54802425 | Msa0077760:CDS |
| ATCTTTGGGACTCGTTTGGT+AGG | 0.580248 | 1_2:+54802392 | Msa0077760:CDS |
| AAAATGCCGTTTGAGGAAAG+TGG | 0.584130 | 1_2:+54802526 | Msa0077760:CDS |
| AACATATTGATCAGCAGTGA+CGG | 0.585626 | 1_2:-54800535 | None:intergenic |
| TAAACCATAAAGATCAGAAG+TGG | 0.601984 | 1_2:+54800381 | Msa0077760:five_prime_UTR |
| GGTTGGGATTTAGAATCCCA+TGG | 0.602227 | 1_2:-54800594 | None:intergenic |
| GTCCATATAACTATTGGTGA+TGG | 0.602339 | 1_2:+54803396 | Msa0077760:CDS |
| GTAGAATATGGAACATTACC+TGG | 0.603088 | 1_2:+54802064 | Msa0077760:CDS |
| GGATGATATGATGACAGTCA+TGG | 0.603599 | 1_2:+54803176 | Msa0077760:CDS |
| AACTGGTGGAAGGAAGGAAG+AGG | 0.605240 | 1_2:-54800421 | None:intergenic |
| TACATGGTATTATATTCCAA+AGG | 0.607049 | 1_2:-54802175 | None:intergenic |
| ATTCCTATGCCAACTCCAGA+AGG | 0.608575 | 1_2:-54803670 | None:intergenic |
| GCATCCTGAGCTTACCAAAG+AGG | 0.609678 | 1_2:-54803733 | None:intergenic |
| TAACATATAATTATAAGAGG+TGG | 0.611323 | 1_2:-54802116 | None:intergenic |
| GGTGATGGTGGAAACCGAGA+AGG | 0.616947 | 1_2:+54803411 | Msa0077760:CDS |
| AGATATGATTCAATATCTGA+AGG | 0.617637 | 1_2:+54802088 | Msa0077760:CDS |
| AGAGGTTATCCAGATATCAT+CGG | 0.619399 | 1_2:-54803715 | None:intergenic |
| TCAGCATATGAAAGATCACC+CGG | 0.620769 | 1_2:-54802358 | None:intergenic |
| AACAGAAGGAAATCATGAAG+AGG | 0.625469 | 1_2:+54802453 | Msa0077760:CDS |
| TGGACAGGAAAAGGACACCT+TGG | 0.626483 | 1_2:+54803094 | Msa0077760:CDS |
| ACGCTGGCAGCATAAAGCAA+TGG | 0.627780 | 1_2:-54803201 | None:intergenic |
| ACAAATTCATCGGTTAACAA+TGG | 0.636241 | 1_2:-54802484 | None:intergenic |
| TCTACAGGAAGATCTGTCAA+AGG | 0.636721 | 1_2:+54803071 | Msa0077760:intron |
| ACAGACACATGAGAATAACC+TGG | 0.637151 | 1_2:+54802011 | Msa0077760:CDS |
| ACAGGAAGATCTGTCAAAGG+TGG | 0.639546 | 1_2:+54803074 | Msa0077760:intron |
| AGCAAGAACTAAATCAACGC+TGG | 0.641446 | 1_2:-54803217 | None:intergenic |
| GTATAACAGTAACTGGTGGA+AGG | 0.644737 | 1_2:-54800431 | None:intergenic |
| TTGTGTTATTTCATGTGCCG+TGG | 0.647579 | 1_2:+54803121 | Msa0077760:CDS |
| TGGTTGGACTAAATCAACAT+TGG | 0.647792 | 1_2:+54802297 | Msa0077760:CDS |
| ATCACCAATAGTTATATGGA+CGG | 0.650019 | 1_2:-54803394 | None:intergenic |
| AATGGAAGATTGGATCCTTG+TGG | 0.651657 | 1_2:+54803369 | Msa0077760:CDS |
| AGGCCGTGGATGGTAACAGA+AGG | 0.651742 | 1_2:+54802439 | Msa0077760:CDS |
| GATATTGAATCATATCTACC+AGG | 0.651988 | 1_2:-54802082 | None:intergenic |
| ACATATATCCACAACCAAAG+TGG | 0.656207 | 1_2:+54803586 | Msa0077760:CDS |
| CAAGGCTCACCAAGGCGCAG+GGG | 0.658372 | 1_2:+54803155 | Msa0077760:CDS |
| TTGGGTATAACAGTAACTGG+TGG | 0.660084 | 1_2:-54800435 | None:intergenic |
| GTTATATGGACGGTGCCACA+AGG | 0.660432 | 1_2:-54803384 | None:intergenic |
| CAACTTTGACAACATCACCA+TGG | 0.667387 | 1_2:+54800455 | Msa0077760:exon |
| AGTACTCAGAGCAATACAGA+TGG | 0.679754 | 1_2:+54802629 | Msa0077760:CDS |
| AATAGTAACAAGGCTCACCA+AGG | 0.684934 | 1_2:+54803147 | Msa0077760:CDS |
| GCCTTGTTACTATTATACCA+CGG | 0.702987 | 1_2:-54803138 | None:intergenic |
| GCCGTGGTATAATAGTAACA+AGG | 0.710352 | 1_2:+54803137 | Msa0077760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATCTCATATTTTTTT+TGG | - | chr1_2:54800935-54800954 | None:intergenic | 10.0% |
| !! | ATATAACATATAATTATAAG+AGG | - | chr1_2:54802122-54802141 | None:intergenic | 10.0% |
| !! | TTTAATTGCTTGTATTATTA+GGG | + | chr1_2:54800763-54800782 | Msa0077760:intron | 15.0% |
| !! | ACTTTATGTATGTTTATTTA+TGG | + | chr1_2:54801055-54801074 | Msa0077760:intron | 15.0% |
| !! | CTTTATGTATGTTTATTTAT+GGG | + | chr1_2:54801056-54801075 | Msa0077760:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr1_2:54801543-54801562 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr1_2:54801542-54801561 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr1_2:54801322-54801341 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr1_2:54801453-54801472 | Msa0077760:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr1_2:54801542-54801561 | Msa0077760:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr1_2:54801543-54801562 | Msa0077760:intron | 15.0% |
| !!! | AATTAACCCTTTATTTATTT+AGG | + | chr1_2:54801608-54801627 | Msa0077760:intron | 15.0% |
| !!! | ATTAACCCTTTATTTATTTA+GGG | + | chr1_2:54801609-54801628 | Msa0077760:intron | 15.0% |
| !!! | TAAAAATTTGTTATCTGAAT+TGG | + | chr1_2:54803474-54803493 | Msa0077760:intron | 15.0% |
| !!! | ATAGTAGTTCTATTTCTATA+GGG | - | chr1_2:54800741-54800760 | None:intergenic | 20.0% |
| !!! | AATAGTAGTTCTATTTCTAT+AGG | - | chr1_2:54800742-54800761 | None:intergenic | 20.0% |
| !! | GTTTAATTGCTTGTATTATT+AGG | + | chr1_2:54800762-54800781 | Msa0077760:intron | 20.0% |
| !! | TTAATTGCTTGTATTATTAG+GGG | + | chr1_2:54800764-54800783 | Msa0077760:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr1_2:54801192-54801211 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr1_2:54801193-54801212 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr1_2:54801287-54801306 | None:intergenic | 20.0% |
| !!! | CTAAGAATCTGAAATTTAAT+AGG | - | chr1_2:54801661-54801680 | None:intergenic | 20.0% |
| !!! | GAAATTCATATAACTACTTT+TGG | - | chr1_2:54801735-54801754 | None:intergenic | 20.0% |
| !! | TAACATATAATTATAAGAGG+TGG | - | chr1_2:54802119-54802138 | None:intergenic | 20.0% |
| !! | AATTATATGTTATATAGCTC+AGG | + | chr1_2:54802127-54802146 | Msa0077760:CDS | 20.0% |
| !! | AAAGTAATTGGAAATTTAGA+TGG | - | chr1_2:54802250-54802269 | None:intergenic | 20.0% |
| !! | ATTATACGATACAAATTCAT+CGG | - | chr1_2:54802497-54802516 | None:intergenic | 20.0% |
| !! | ATTACACTTATGGAAATATA+CGG | - | chr1_2:54802673-54802692 | None:intergenic | 20.0% |
| !! | TATATTTCCATAAGTGTAAT+GGG | + | chr1_2:54802673-54802692 | Msa0077760:intron | 20.0% |
| !! | AACTTATATGAAAAACAGTT+TGG | - | chr1_2:54802824-54802843 | None:intergenic | 20.0% |
| !!! | TTGTAAATGTTTCTAAAGAA+CGG | - | chr1_2:54803034-54803053 | None:intergenic | 20.0% |
| !! | AATAAAGGCTAAACTATAAA+AGG | - | chr1_2:54803275-54803294 | None:intergenic | 20.0% |
| !! | GTGCTTAGAAATTAAAATAA+AGG | - | chr1_2:54803290-54803309 | None:intergenic | 20.0% |
| !!! | AAATTTTTATAATGTGTCTC+TGG | - | chr1_2:54803463-54803482 | None:intergenic | 20.0% |
| !! | AAACAACCTTAATAGTTATA+TGG | - | chr1_2:54803518-54803537 | None:intergenic | 20.0% |
| !! | TAACTATTAAGGTTGTTTAT+TGG | + | chr1_2:54803520-54803539 | Msa0077760:intron | 20.0% |
| !!! | CTTTTTGTATATATACTCTA+AGG | + | chr1_2:54803890-54803909 | Msa0077760:three_prime_UTR | 20.0% |
| ! | AAGAATATGATGACATCATT+AGG | + | chr1_2:54800351-54800370 | Msa0077760:five_prime_UTR | 25.0% |
| !!! | TTAAGTTTTTTCTTGGCAAA+GGG | - | chr1_2:54800563-54800582 | None:intergenic | 25.0% |
| !!! | TTTAAGTTTTTTCTTGGCAA+AGG | - | chr1_2:54800564-54800583 | None:intergenic | 25.0% |
| !!! | GGAATGTTTAAGTTTTTTCT+TGG | - | chr1_2:54800570-54800589 | None:intergenic | 25.0% |
| ! | GAAAAAACTTAAACATTCCA+TGG | + | chr1_2:54800571-54800590 | Msa0077760:CDS | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr1_2:54801159-54801178 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr1_2:54801481-54801500 | Msa0077760:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr1_2:54801482-54801501 | Msa0077760:intron | 25.0% |
| ! | AGGTACCCTAAATAAATAAA+GGG | - | chr1_2:54801617-54801636 | None:intergenic | 25.0% |
| ! | TAGGTACCCTAAATAAATAA+AGG | - | chr1_2:54801618-54801637 | None:intergenic | 25.0% |
| ! | ACCTATTAAATTTCAGATTC+TGG | + | chr1_2:54801633-54801652 | Msa0077760:intron | 25.0% |
| !! | ACCAGAATCTGAAATTTAAT+AGG | - | chr1_2:54801637-54801656 | None:intergenic | 25.0% |
| ! | AGATATGATTCAATATCTGA+AGG | + | chr1_2:54802088-54802107 | Msa0077760:CDS | 25.0% |
| ! | AAGATACACCATAGTATAAT+TGG | + | chr1_2:54802151-54802170 | Msa0077760:CDS | 25.0% |
| ! | TACATGGTATTATATTCCAA+AGG | - | chr1_2:54802178-54802197 | None:intergenic | 25.0% |
| ! | TTGTATCGTATAATTCTAGA+TGG | + | chr1_2:54802503-54802522 | Msa0077760:CDS | 25.0% |
| !!! | TATTATTCTTTTGAAGTTGC+AGG | + | chr1_2:54802565-54802584 | Msa0077760:CDS | 25.0% |
| ! | GTATATTTCCATAAGTGTAA+TGG | + | chr1_2:54802672-54802691 | Msa0077760:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1_2:54802735-54802754 | None:intergenic | 25.0% |
| ! | AATTTCTAAGCACAATTCAA+TGG | + | chr1_2:54803297-54803316 | Msa0077760:intron | 25.0% |
| ! | ATCTGTCCATATAACTATTA+AGG | + | chr1_2:54803509-54803528 | Msa0077760:intron | 25.0% |
| ! | AGTAAAGCTAGTAATTTCTT+TGG | + | chr1_2:54803942-54803961 | Msa0077760:three_prime_UTR | 25.0% |
| TAAACCATAAAGATCAGAAG+TGG | + | chr1_2:54800381-54800400 | Msa0077760:five_prime_UTR | 30.0% | |
| ! | AAGAATGAATTTGAGTTCCA+TGG | - | chr1_2:54800475-54800494 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr1_2:54801574-54801593 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr1_2:54801573-54801592 | None:intergenic | 30.0% |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr1_2:54801160-54801179 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr1_2:54801419-54801438 | None:intergenic | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr1_2:54801573-54801592 | Msa0077760:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr1_2:54801574-54801593 | Msa0077760:intron | 30.0% |
| TTAGACTACAAAATTCTGAG+TGG | + | chr1_2:54801677-54801696 | Msa0077760:intron | 30.0% | |
| TGAAATGCTGGAATTATGTT+TGG | - | chr1_2:54801852-54801871 | None:intergenic | 30.0% | |
| ! | AGTGTCTATATTTGAAATGC+TGG | - | chr1_2:54801864-54801883 | None:intergenic | 30.0% |
| AAATCCAAACACGAACAAAT+AGG | + | chr1_2:54801889-54801908 | Msa0077760:intron | 30.0% | |
| !!! | TGACAGAGTTTTGATTTTTC+AGG | + | chr1_2:54801967-54801986 | Msa0077760:CDS | 30.0% |
| !!! | TTTTCAGGTACATATATCTC+TGG | + | chr1_2:54801982-54802001 | Msa0077760:CDS | 30.0% |
| TCACCTTCATTTGTAGAATA+TGG | + | chr1_2:54802052-54802071 | Msa0077760:CDS | 30.0% | |
| GTTCCATATTCTACAAATGA+AGG | - | chr1_2:54802058-54802077 | None:intergenic | 30.0% | |
| GATATTGAATCATATCTACC+AGG | - | chr1_2:54802085-54802104 | None:intergenic | 30.0% | |
| !! | ACCATGTATTTTTATCGATG+TGG | + | chr1_2:54802190-54802209 | Msa0077760:CDS | 30.0% |
| !! | ATGTATTTTTATCGATGTGG+CGG | + | chr1_2:54802193-54802212 | Msa0077760:CDS | 30.0% |
| GTAATTGGAAATTTAGATGG+AGG | - | chr1_2:54802247-54802266 | None:intergenic | 30.0% | |
| !! | ATTTCCAATTACTTTTGCTG+TGG | + | chr1_2:54802255-54802274 | Msa0077760:CDS | 30.0% |
| ATATGATGTTTACCTTCTTC+CGG | + | chr1_2:54802339-54802358 | Msa0077760:CDS | 30.0% | |
| TGATTGTATGCAACATCTTT+GGG | + | chr1_2:54802378-54802397 | Msa0077760:CDS | 30.0% | |
| ! | ACAAATTCATCGGTTAACAA+TGG | - | chr1_2:54802487-54802506 | None:intergenic | 30.0% |
| TCATATAAGTGCTTATGTGT+GGG | + | chr1_2:54802776-54802795 | Msa0077760:intron | 30.0% | |
| TTGTTATCAAATGCCTGTTT+GGG | - | chr1_2:54802988-54803007 | None:intergenic | 30.0% | |
| ! | TTTGTTATCAAATGCCTGTT+TGG | - | chr1_2:54802989-54803008 | None:intergenic | 30.0% |
| TTTCTTCATTTCTCATCTAC+AGG | + | chr1_2:54803056-54803075 | Msa0077760:intron | 30.0% | |
| AGCACAATTCAATGGAAATT+TGG | + | chr1_2:54803305-54803324 | Msa0077760:intron | 30.0% | |
| !! | AATGGAAATTTGGTCTTAAG+TGG | + | chr1_2:54803315-54803334 | Msa0077760:intron | 30.0% |
| ATCACCAATAGTTATATGGA+CGG | - | chr1_2:54803397-54803416 | None:intergenic | 30.0% | |
| CAACAATGATGTAAGAATAC+AGG | - | chr1_2:54803557-54803576 | None:intergenic | 30.0% | |
| !! | CTTACATCATTGTTGTTTAC+AGG | + | chr1_2:54803562-54803581 | Msa0077760:intron | 30.0% |
| ! | TGATAATGACGAGTCAATTA+AGG | + | chr1_2:54803692-54803711 | Msa0077760:CDS | 30.0% |
| GACATGACATGAATCTATTA+GGG | - | chr1_2:54803801-54803820 | None:intergenic | 30.0% | |
| AGACATGACATGAATCTATT+AGG | - | chr1_2:54803802-54803821 | None:intergenic | 30.0% | |
| ! | GTATATATACTCTAAGGACT+TGG | + | chr1_2:54803896-54803915 | Msa0077760:three_prime_UTR | 30.0% |
| GACTTGGAATTGTTTGTAAA+TGG | + | chr1_2:54803912-54803931 | Msa0077760:three_prime_UTR | 30.0% | |
| ACTACCACTTCTGATCTTTA+TGG | - | chr1_2:54800388-54800407 | None:intergenic | 35.0% | |
| AAGTTGGGTATAACAGTAAC+TGG | - | chr1_2:54800441-54800460 | None:intergenic | 35.0% | |
| ! | ATGGTGATGTTGTCAAAGTT+GGG | - | chr1_2:54800456-54800475 | None:intergenic | 35.0% |
| AACATATTGATCAGCAGTGA+CGG | - | chr1_2:54800538-54800557 | None:intergenic | 35.0% | |
| CATTAAAATGCGTGTTAGCT+GGG | - | chr1_2:54800889-54800908 | None:intergenic | 35.0% | |
| TCATTAAAATGCGTGTTAGC+TGG | - | chr1_2:54800890-54800909 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr1_2:54801558-54801577 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr1_2:54801558-54801577 | Msa0077760:intron | 35.0% | |
| AATGCCTATTTGTTCGTGTT+TGG | - | chr1_2:54801896-54801915 | None:intergenic | 35.0% | |
| ACACGAACAAATAGGCATTA+TGG | + | chr1_2:54801897-54801916 | Msa0077760:intron | 35.0% | |
| CACGAACAAATAGGCATTAT+GGG | + | chr1_2:54801898-54801917 | Msa0077760:intron | 35.0% | |
| TTCTGTACATCTAAGCAGAA+TGG | + | chr1_2:54801926-54801945 | Msa0077760:intron | 35.0% | |
| ATGTTTGTCATCAGTTATCC+AGG | - | chr1_2:54802032-54802051 | None:intergenic | 35.0% | |
| GTAGAATATGGAACATTACC+TGG | + | chr1_2:54802064-54802083 | Msa0077760:CDS | 35.0% | |
| CCAAAGGTCCAATTATACTA+TGG | - | chr1_2:54802162-54802181 | None:intergenic | 35.0% | |
| CCATAGTATAATTGGACCTT+TGG | + | chr1_2:54802159-54802178 | Msa0077760:CDS | 35.0% | |
| GCCACATCGATAAAAATACA+TGG | - | chr1_2:54802194-54802213 | None:intergenic | 35.0% | |
| TGGTTGGACTAAATCAACAT+TGG | + | chr1_2:54802297-54802316 | Msa0077760:CDS | 35.0% | |
| TATGATGTTTACCTTCTTCC+GGG | + | chr1_2:54802340-54802359 | Msa0077760:CDS | 35.0% | |
| CTGATTGTATGCAACATCTT+TGG | + | chr1_2:54802377-54802396 | Msa0077760:CDS | 35.0% | |
| AACAGAAGGAAATCATGAAG+AGG | + | chr1_2:54802453-54802472 | Msa0077760:CDS | 35.0% | |
| GTGTTCATGTTATCATGCTA+GGG | + | chr1_2:54802587-54802606 | Msa0077760:CDS | 35.0% | |
| ATCCATCATACATGTGCTAA+AGG | + | chr1_2:54802696-54802715 | Msa0077760:intron | 35.0% | |
| AACCTTTAGCACATGTATGA+TGG | - | chr1_2:54802701-54802720 | None:intergenic | 35.0% | |
| ATGTGCTAAAGGTTTAGACT+AGG | + | chr1_2:54802707-54802726 | Msa0077760:intron | 35.0% | |
| TGTGCTAAAGGTTTAGACTA+GGG | + | chr1_2:54802708-54802727 | Msa0077760:intron | 35.0% | |
| CACATAAGCACTTATATGAC+AGG | - | chr1_2:54802775-54802794 | None:intergenic | 35.0% | |
| GTCATATAAGTGCTTATGTG+TGG | + | chr1_2:54802775-54802794 | Msa0077760:intron | 35.0% | |
| AAGCTAACTTGAAGAGCTTA+TGG | + | chr1_2:54802859-54802878 | Msa0077760:intron | 35.0% | |
| AGACTGTTTGGTAGAGTTTA+TGG | - | chr1_2:54802925-54802944 | None:intergenic | 35.0% | |
| TAAACACTAGTGAGACTGTT+TGG | - | chr1_2:54802937-54802956 | None:intergenic | 35.0% | |
| TCAAATAAGTCAACCCAAAC+AGG | + | chr1_2:54802972-54802991 | Msa0077760:intron | 35.0% | |
| ! | CAGGCATTTGATAACAAACA+TGG | + | chr1_2:54802991-54803010 | Msa0077760:intron | 35.0% |
| ! | GCCTTGTTACTATTATACCA+CGG | - | chr1_2:54803141-54803160 | None:intergenic | 35.0% |
| TGTTCATGCTTATGAACGTT+CGG | + | chr1_2:54803245-54803264 | Msa0077760:CDS | 35.0% | |
| GTCCATATAACTATTGGTGA+TGG | + | chr1_2:54803396-54803415 | Msa0077760:CDS | 35.0% | |
| CACCATCACCAATAGTTATA+TGG | - | chr1_2:54803401-54803420 | None:intergenic | 35.0% | |
| !! | CATATAACTATTGGTGATGG+TGG | + | chr1_2:54803399-54803418 | Msa0077760:CDS | 35.0% |
| ACATATATCCACAACCAAAG+TGG | + | chr1_2:54803586-54803605 | Msa0077760:CDS | 35.0% | |
| AGAGGTTATCCAGATATCAT+CGG | - | chr1_2:54803718-54803737 | None:intergenic | 35.0% | |
| TGATATCTGGATAACCTCTT+TGG | + | chr1_2:54803719-54803738 | Msa0077760:CDS | 35.0% | |
| ATAAGAACAAACATGAGCTC+AGG | + | chr1_2:54803760-54803779 | Msa0077760:CDS | 35.0% | |
| GTATAACAGTAACTGGTGGA+AGG | - | chr1_2:54800434-54800453 | None:intergenic | 40.0% | |
| TTGGGTATAACAGTAACTGG+TGG | - | chr1_2:54800438-54800457 | None:intergenic | 40.0% | |
| ! | CATGGTGATGTTGTCAAAGT+TGG | - | chr1_2:54800457-54800476 | None:intergenic | 40.0% |
| CAACTTTGACAACATCACCA+TGG | + | chr1_2:54800455-54800474 | Msa0077760:exon | 40.0% | |
| ACTTAAACATTCCATGGCCA+TGG | + | chr1_2:54800577-54800596 | Msa0077760:CDS | 40.0% | |
| CTTAAACATTCCATGGCCAT+GGG | + | chr1_2:54800578-54800597 | Msa0077760:CDS | 40.0% | |
| AAGAGAGTTTGACCTGTTGA+GGG | - | chr1_2:54800623-54800642 | None:intergenic | 40.0% | |
| AAAGAGAGTTTGACCTGTTG+AGG | - | chr1_2:54800624-54800643 | None:intergenic | 40.0% | |
| TCTAAGCAGAATGGTTGTCT+TGG | + | chr1_2:54801935-54801954 | Msa0077760:intron | 40.0% | |
| ! | AGAATGGTTGTCTTGGTTTG+AGG | + | chr1_2:54801942-54801961 | Msa0077760:intron | 40.0% |
| ACAGACACATGAGAATAACC+TGG | + | chr1_2:54802011-54802030 | Msa0077760:CDS | 40.0% | |
| !!! | AGGAGTTTTGAGCTTGAACT+CGG | - | chr1_2:54802227-54802246 | None:intergenic | 40.0% |
| TCAGCATATGAAAGATCACC+CGG | - | chr1_2:54802361-54802380 | None:intergenic | 40.0% | |
| TTTCCTTCTGTTACCATCCA+CGG | - | chr1_2:54802445-54802464 | None:intergenic | 40.0% | |
| ! | TAGATGGAAAATGCCGTTTG+AGG | + | chr1_2:54802519-54802538 | Msa0077760:CDS | 40.0% |
| ! | AAAATGCCGTTTGAGGAAAG+TGG | + | chr1_2:54802526-54802545 | Msa0077760:CDS | 40.0% |
| GTTGATCCACTTTCCTCAAA+CGG | - | chr1_2:54802535-54802554 | None:intergenic | 40.0% | |
| GGTGTTCATGTTATCATGCT+AGG | + | chr1_2:54802586-54802605 | Msa0077760:CDS | 40.0% | |
| AGTACTCAGAGCAATACAGA+TGG | + | chr1_2:54802629-54802648 | Msa0077760:CDS | 40.0% | |
| AGAGCAATACAGATGGCTAA+AGG | + | chr1_2:54802636-54802655 | Msa0077760:CDS | 40.0% | |
| GATGGATCCCATTACACTTA+TGG | - | chr1_2:54802683-54802702 | None:intergenic | 40.0% | |
| TCTACAGGAAGATCTGTCAA+AGG | + | chr1_2:54803071-54803090 | Msa0077760:intron | 40.0% | |
| TGAAATAACACAAGCAGCCA+AGG | - | chr1_2:54803114-54803133 | None:intergenic | 40.0% | |
| !! | TTGTGTTATTTCATGTGCCG+TGG | + | chr1_2:54803121-54803140 | Msa0077760:CDS | 40.0% |
| GCCGTGGTATAATAGTAACA+AGG | + | chr1_2:54803137-54803156 | Msa0077760:CDS | 40.0% | |
| AATAGTAACAAGGCTCACCA+AGG | + | chr1_2:54803147-54803166 | Msa0077760:CDS | 40.0% | |
| GGATGATATGATGACAGTCA+TGG | + | chr1_2:54803176-54803195 | Msa0077760:CDS | 40.0% | |
| AGCAAGAACTAAATCAACGC+TGG | - | chr1_2:54803220-54803239 | None:intergenic | 40.0% | |
| !! | AGCGTTGATTTAGTTCTTGC+TGG | + | chr1_2:54803219-54803238 | Msa0077760:CDS | 40.0% |
| TGACAGAAACGCGTGTATAA+TGG | + | chr1_2:54803351-54803370 | Msa0077760:intron | 40.0% | |
| ! | ACGCGTGTATAATGGAAGAT+TGG | + | chr1_2:54803359-54803378 | Msa0077760:CDS | 40.0% |
| AATGGAAGATTGGATCCTTG+TGG | + | chr1_2:54803369-54803388 | Msa0077760:CDS | 40.0% | |
| AATTCTGACCACTTTGGTTG+TGG | - | chr1_2:54803597-54803616 | None:intergenic | 40.0% | |
| TAAACTCAACTCATGCCTTC+TGG | + | chr1_2:54803655-54803674 | Msa0077760:CDS | 40.0% | |
| CAATTAAGGCCGATGATATC+TGG | + | chr1_2:54803706-54803725 | Msa0077760:CDS | 40.0% | |
| ATAACCTCTTTGGTAAGCTC+AGG | + | chr1_2:54803729-54803748 | Msa0077760:CDS | 40.0% | |
| ATTCATGTCATGTCTGCTAC+AGG | + | chr1_2:54803807-54803826 | Msa0077760:three_prime_UTR | 40.0% | |
| AACAGTAACTGGTGGAAGGA+AGG | - | chr1_2:54800430-54800449 | None:intergenic | 45.0% | |
| ! | GATTTAGAATCCCATGGCCA+TGG | - | chr1_2:54800591-54800610 | None:intergenic | 45.0% |
| ! | GGTTGGGATTTAGAATCCCA+TGG | - | chr1_2:54800597-54800616 | None:intergenic | 45.0% |
| AGTTTGACCTGTTGAGGGTA+AGG | - | chr1_2:54800618-54800637 | None:intergenic | 45.0% | |
| CAGGTACATATATCTCTGGC+AGG | + | chr1_2:54801986-54802005 | Msa0077760:CDS | 45.0% | |
| !!! | TTTTATCGATGTGGCGGACA+AGG | + | chr1_2:54802199-54802218 | Msa0077760:CDS | 45.0% |
| !!! | GGAGTTTTGAGCTTGAACTC+GGG | - | chr1_2:54802226-54802245 | None:intergenic | 45.0% |
| CCAGCCACAGCAAAAGTAAT+TGG | - | chr1_2:54802262-54802281 | None:intergenic | 45.0% | |
| !! | CCAATTACTTTTGCTGTGGC+TGG | + | chr1_2:54802259-54802278 | Msa0077760:CDS | 45.0% |
| ATGAAAGATCACCCGGAAGA+AGG | - | chr1_2:54802354-54802373 | None:intergenic | 45.0% | |
| !! | CAACATCTTTGGGACTCGTT+TGG | + | chr1_2:54802388-54802407 | Msa0077760:CDS | 45.0% |
| !! | ATCTTTGGGACTCGTTTGGT+AGG | + | chr1_2:54802392-54802411 | Msa0077760:CDS | 45.0% |
| GTTTAGACTAGGGTCCTGTT+TGG | + | chr1_2:54802718-54802737 | Msa0077760:intron | 45.0% | |
| ACAGGAAGATCTGTCAAAGG+TGG | + | chr1_2:54803074-54803093 | Msa0077760:intron | 45.0% | |
| AAGATCTGTCAAAGGTGGAC+AGG | + | chr1_2:54803079-54803098 | Msa0077760:CDS | 45.0% | |
| TGTCAAAGGTGGACAGGAAA+AGG | + | chr1_2:54803085-54803104 | Msa0077760:CDS | 45.0% | |
| GGCACCGTCCATATAACTAT+TGG | + | chr1_2:54803390-54803409 | Msa0077760:CDS | 45.0% | |
| TCACGGAATTCTGACCACTT+TGG | - | chr1_2:54803603-54803622 | None:intergenic | 45.0% | |
| ! | GAATTCCGTGAAGCCAGTTT+TGG | + | chr1_2:54803612-54803631 | Msa0077760:CDS | 45.0% |
| ! | CATGACCAAAACTGGCTTCA+CGG | - | chr1_2:54803620-54803639 | None:intergenic | 45.0% |
| ATTCCTATGCCAACTCCAGA+AGG | - | chr1_2:54803673-54803692 | None:intergenic | 45.0% | |
| !! | AAAGAAAATAATAATAATAA+TGG | - | chr1_2:54800665-54800684 | None:intergenic | 5.0% |
| !!! | TTATATTTTTTTTTTTATTC+TGG | + | chr1_2:54800698-54800717 | Msa0077760:intron | 5.0% |
| !!! | TAAAAAAGTAATTTTTTTTA+AGG | - | chr1_2:54800859-54800878 | None:intergenic | 5.0% |
| !! | TTTATTATTTATCTTATTAT+AGG | - | chr1_2:54800977-54800996 | None:intergenic | 5.0% |
| !!! | TATAAGTAAATTTTTTTTAT+AGG | + | chr1_2:54801513-54801532 | Msa0077760:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTATA+GGG | + | chr1_2:54801514-54801533 | Msa0077760:intron | 5.0% |
| AACTGGTGGAAGGAAGGAAG+AGG | - | chr1_2:54800424-54800443 | None:intergenic | 50.0% | |
| ATCCCAACCTTACCCTCAAC+AGG | + | chr1_2:54800608-54800627 | Msa0077760:CDS | 50.0% | |
| GACCTGTTGAGGGTAAGGTT+GGG | - | chr1_2:54800613-54800632 | None:intergenic | 50.0% | |
| TGACCTGTTGAGGGTAAGGT+TGG | - | chr1_2:54800614-54800633 | None:intergenic | 50.0% | |
| GCGATCTTGGTCAAACTGGT+TGG | + | chr1_2:54802281-54802300 | Msa0077760:CDS | 50.0% | |
| TGGACAGGAAAAGGACACCT+TGG | + | chr1_2:54803094-54803113 | Msa0077760:CDS | 50.0% | |
| ACGCTGGCAGCATAAAGCAA+TGG | - | chr1_2:54803204-54803223 | None:intergenic | 50.0% | |
| !! | GTTATATGGACGGTGCCACA+AGG | - | chr1_2:54803387-54803406 | None:intergenic | 50.0% |
| ACCGAGAAGGCTTAGCTCAT+AGG | + | chr1_2:54803424-54803443 | Msa0077760:CDS | 50.0% | |
| GCCTATGAGCTAAGCCTTCT+CGG | - | chr1_2:54803428-54803447 | None:intergenic | 50.0% | |
| !! | CGTGAAGCCAGTTTTGGTCA+TGG | + | chr1_2:54803618-54803637 | Msa0077760:CDS | 50.0% |
| CAGCTCACCATGACCAAAAC+TGG | - | chr1_2:54803628-54803647 | None:intergenic | 50.0% | |
| !! | CAACTCATGCCTTCTGGAGT+TGG | + | chr1_2:54803661-54803680 | Msa0077760:CDS | 50.0% |
| !! | ATGCCTTCTGGAGTTGGCAT+AGG | + | chr1_2:54803667-54803686 | Msa0077760:CDS | 50.0% |
| GCATCCTGAGCTTACCAAAG+AGG | - | chr1_2:54803736-54803755 | None:intergenic | 50.0% | |
| ! | TTTGCTGTGGCTGGCGATCT+TGG | + | chr1_2:54802268-54802287 | Msa0077760:CDS | 55.0% |
| GCTGGCGATCTTGGTCAAAC+TGG | + | chr1_2:54802277-54802296 | Msa0077760:CDS | 55.0% | |
| GGACTCGTTTGGTAGGCTTG+TGG | + | chr1_2:54802399-54802418 | Msa0077760:CDS | 55.0% | |
| ! | TGGAGCCGTTTGCTAGTGCA+AGG | + | chr1_2:54802419-54802438 | Msa0077760:CDS | 55.0% |
| CACGGCCTTGCACTAGCAAA+CGG | - | chr1_2:54802427-54802446 | None:intergenic | 55.0% | |
| AGGCCGTGGATGGTAACAGA+AGG | + | chr1_2:54802439-54802458 | Msa0077760:CDS | 55.0% | |
| TCATATCATCCCCTGCGCCT+TGG | - | chr1_2:54803167-54803186 | None:intergenic | 55.0% | |
| !! | GGTGATGGTGGAAACCGAGA+AGG | + | chr1_2:54803411-54803430 | Msa0077760:CDS | 55.0% |
| ! | CGTTTGCTAGTGCAAGGCCG+TGG | + | chr1_2:54802425-54802444 | Msa0077760:CDS | 60.0% |
| TGCTAGTGCAAGGCCGTGGA+TGG | + | chr1_2:54802429-54802448 | Msa0077760:CDS | 60.0% | |
| AACAAGGCTCACCAAGGCGC+AGG | + | chr1_2:54803153-54803172 | Msa0077760:CDS | 60.0% | |
| ACAAGGCTCACCAAGGCGCA+GGG | + | chr1_2:54803154-54803173 | Msa0077760:CDS | 60.0% | |
| CAAGGCTCACCAAGGCGCAG+GGG | + | chr1_2:54803155-54803174 | Msa0077760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 54800351 | 54804011 | 54800351 | ID=Msa0077760;Name=Msa0077760 |
| chr1_2 | mRNA | 54800351 | 54804011 | 54800351 | ID=Msa0077760-mRNA-1;Parent=Msa0077760;Name=Msa0077760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=123|0.75|0.8|1|1|1|5|208|455 |
| chr1_2 | exon | 54800351 | 54800629 | 54800351 | ID=Msa0077760-mRNA-1:exon:17007;Parent=Msa0077760-mRNA-1 |
| chr1_2 | exon | 54801944 | 54802657 | 54801944 | ID=Msa0077760-mRNA-1:exon:17008;Parent=Msa0077760-mRNA-1 |
| chr1_2 | exon | 54803078 | 54803266 | 54803078 | ID=Msa0077760-mRNA-1:exon:17009;Parent=Msa0077760-mRNA-1 |
| chr1_2 | exon | 54803357 | 54803445 | 54803357 | ID=Msa0077760-mRNA-1:exon:17010;Parent=Msa0077760-mRNA-1 |
| chr1_2 | exon | 54803584 | 54804011 | 54803584 | ID=Msa0077760-mRNA-1:exon:17011;Parent=Msa0077760-mRNA-1 |
| chr1_2 | five_prime_UTR | 54800351 | 54800473 | 54800351 | ID=Msa0077760-mRNA-1:five_prime_utr;Parent=Msa0077760-mRNA-1 |
| chr1_2 | CDS | 54800474 | 54800629 | 54800474 | ID=Msa0077760-mRNA-1:cds;Parent=Msa0077760-mRNA-1 |
| chr1_2 | CDS | 54801944 | 54802657 | 54801944 | ID=Msa0077760-mRNA-1:cds;Parent=Msa0077760-mRNA-1 |
| chr1_2 | CDS | 54803078 | 54803266 | 54803078 | ID=Msa0077760-mRNA-1:cds;Parent=Msa0077760-mRNA-1 |
| chr1_2 | CDS | 54803357 | 54803445 | 54803357 | ID=Msa0077760-mRNA-1:cds;Parent=Msa0077760-mRNA-1 |
| chr1_2 | CDS | 54803584 | 54803803 | 54803584 | ID=Msa0077760-mRNA-1:cds;Parent=Msa0077760-mRNA-1 |
| chr1_2 | three_prime_UTR | 54803804 | 54804011 | 54803804 | ID=Msa0077760-mRNA-1:three_prime_utr;Parent=Msa0077760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
