Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454850 | sp|Q9LJU7|PPA18_ARATH | 68.722 | 454 | 125 | 1 | 34 | 487 | 1 | 437 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454850 | G7K8G7 | 93.392 | 454 | 15 | 1 | 34 | 487 | 1 | 439 | 0.0 | 886 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030210 | Msa1454850 | 0.883607 | 3.887560e-71 | -8.615850e-47 |
| Msa0077760 | Msa1454850 | 0.852397 | 4.743137e-61 | -8.615850e-47 |
| Msa1396090 | Msa1454850 | 0.824049 | 9.963303e-54 | -8.615850e-47 |
| Msa1415560 | Msa1454850 | 0.810685 | 1.019507e-50 | -8.615850e-47 |
| Msa0656680 | Msa1454850 | 0.805002 | 1.646838e-49 | -8.615850e-47 |
| Msa0714340 | Msa1454850 | 0.816422 | 5.577056e-52 | -8.615850e-47 |
| Msa0714380 | Msa1454850 | 0.812031 | 5.201329e-51 | -8.615850e-47 |
| Msa1292730 | Msa1454850 | 0.829245 | 5.732949e-55 | -8.615850e-47 |
| Msa1198450 | Msa1454850 | 0.844361 | 7.927361e-59 | -8.615850e-47 |
| Msa0549740 | Msa1454850 | 0.802297 | 5.998792e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454850 | MtrunA17_Chr5g0443881 | 93.392 | 454 | 15 | 1 | 34 | 487 | 1 | 439 | 0.0 | 886 |
| Msa1454850 | MtrunA17_Chr3g0098721 | 76.116 | 448 | 90 | 2 | 40 | 487 | 3 | 433 | 0.0 | 728 |
| Msa1454850 | MtrunA17_Chr1g0178831 | 64.879 | 373 | 130 | 1 | 99 | 470 | 48 | 420 | 0.0 | 523 |
| Msa1454850 | MtrunA17_Chr7g0266131 | 63.514 | 370 | 134 | 1 | 99 | 467 | 56 | 425 | 0.0 | 514 |
| Msa1454850 | MtrunA17_Chr7g0266151 | 55.479 | 438 | 166 | 6 | 36 | 470 | 11 | 422 | 1.09e-167 | 479 |
| Msa1454850 | MtrunA17_Chr4g0064541 | 40.580 | 414 | 217 | 8 | 99 | 486 | 57 | 467 | 1.93e-95 | 296 |
| Msa1454850 | MtrunA17_Chr6g0453731 | 36.038 | 530 | 235 | 14 | 31 | 464 | 5 | 526 | 1.03e-92 | 293 |
| Msa1454850 | MtrunA17_Chr4g0019091 | 41.730 | 393 | 201 | 8 | 99 | 464 | 57 | 448 | 2.10e-92 | 288 |
| Msa1454850 | MtrunA17_Chr1g0211041 | 41.624 | 394 | 201 | 9 | 99 | 464 | 58 | 450 | 1.19e-89 | 281 |
| Msa1454850 | MtrunA17_Chr3g0121411 | 38.596 | 456 | 187 | 10 | 99 | 464 | 73 | 525 | 9.42e-88 | 279 |
| Msa1454850 | MtrunA17_Chr7g0236041 | 37.225 | 454 | 196 | 9 | 99 | 464 | 72 | 524 | 1.87e-85 | 273 |
| Msa1454850 | MtrunA17_Chr3g0121431 | 37.856 | 457 | 191 | 10 | 99 | 465 | 128 | 581 | 2.53e-85 | 274 |
| Msa1454850 | MtrunA17_Chr4g0019071 | 43.750 | 304 | 152 | 5 | 194 | 478 | 36 | 339 | 4.03e-78 | 248 |
| Msa1454850 | MtrunA17_Chr4g0022251 | 30.650 | 323 | 180 | 9 | 110 | 392 | 231 | 549 | 3.83e-34 | 135 |
| Msa1454850 | MtrunA17_Chr1g0173511 | 29.552 | 335 | 180 | 11 | 110 | 392 | 94 | 424 | 5.80e-32 | 128 |
| Msa1454850 | MtrunA17_Chr4g0043001 | 27.211 | 441 | 240 | 14 | 75 | 436 | 117 | 555 | 6.84e-28 | 117 |
| Msa1454850 | MtrunA17_Chr4g0043021 | 28.345 | 441 | 234 | 17 | 75 | 436 | 118 | 555 | 1.08e-26 | 114 |
| Msa1454850 | MtrunA17_Chr5g0419621 | 26.425 | 386 | 219 | 14 | 117 | 451 | 215 | 586 | 4.03e-22 | 99.8 |
| Msa1454850 | MtrunA17_Chr3g0116051 | 24.034 | 466 | 264 | 17 | 89 | 472 | 159 | 616 | 1.42e-21 | 98.2 |
| Msa1454850 | MtrunA17_Chr8g0364481 | 26.989 | 352 | 202 | 13 | 153 | 455 | 238 | 583 | 9.00e-21 | 95.5 |
| Msa1454850 | MtrunA17_Chr4g0057551 | 25.728 | 412 | 225 | 17 | 110 | 453 | 198 | 596 | 1.01e-20 | 95.5 |
| Msa1454850 | MtrunA17_Chr3g0116091 | 23.810 | 420 | 223 | 14 | 110 | 473 | 35 | 413 | 2.09e-19 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454850 | AT3G20500.1 | 68.722 | 454 | 125 | 1 | 34 | 487 | 1 | 437 | 0.0 | 676 |
| Msa1454850 | AT3G52820.1 | 64.324 | 370 | 131 | 1 | 99 | 467 | 49 | 418 | 5.58e-180 | 511 |
| Msa1454850 | AT3G52810.1 | 55.111 | 450 | 179 | 4 | 35 | 479 | 3 | 434 | 2.31e-171 | 489 |
| Msa1454850 | AT3G52780.1 | 54.730 | 444 | 174 | 9 | 36 | 472 | 2 | 425 | 7.90e-168 | 480 |
| Msa1454850 | AT3G52780.2 | 54.366 | 355 | 136 | 8 | 36 | 384 | 2 | 336 | 9.95e-128 | 376 |
| Msa1454850 | AT5G34850.1 | 40.000 | 415 | 219 | 8 | 99 | 484 | 56 | 469 | 1.94e-95 | 297 |
| Msa1454850 | AT1G56360.1 | 40.955 | 398 | 202 | 10 | 99 | 464 | 52 | 448 | 5.17e-90 | 283 |
| Msa1454850 | AT4G36350.1 | 43.391 | 348 | 174 | 6 | 140 | 464 | 101 | 448 | 6.34e-90 | 282 |
| Msa1454850 | AT3G07130.1 | 40.821 | 414 | 172 | 7 | 123 | 464 | 103 | 515 | 1.16e-87 | 278 |
| Msa1454850 | AT2G16430.2 | 37.969 | 453 | 241 | 13 | 39 | 464 | 13 | 452 | 6.90e-84 | 267 |
| Msa1454850 | AT2G18130.1 | 39.846 | 389 | 196 | 8 | 99 | 464 | 56 | 429 | 1.38e-82 | 263 |
| Msa1454850 | AT2G27190.1 | 39.031 | 392 | 213 | 8 | 99 | 464 | 62 | 453 | 2.62e-82 | 263 |
| Msa1454850 | AT3G07130.2 | 37.808 | 447 | 172 | 8 | 123 | 464 | 103 | 548 | 7.03e-81 | 262 |
| Msa1454850 | AT4G13700.1 | 38.979 | 431 | 202 | 12 | 36 | 410 | 4 | 429 | 1.02e-78 | 253 |
| Msa1454850 | AT2G16430.1 | 42.331 | 326 | 164 | 7 | 163 | 464 | 7 | 332 | 1.03e-75 | 242 |
| Msa1454850 | AT2G32770.3 | 36.020 | 397 | 180 | 6 | 142 | 464 | 138 | 534 | 3.78e-66 | 223 |
| Msa1454850 | AT4G13700.2 | 36.070 | 402 | 196 | 12 | 36 | 381 | 4 | 400 | 1.09e-60 | 204 |
| Msa1454850 | AT2G32770.2 | 35.310 | 371 | 166 | 6 | 142 | 438 | 57 | 427 | 2.45e-58 | 199 |
| Msa1454850 | AT3G46120.1 | 34.307 | 411 | 159 | 13 | 99 | 481 | 56 | 383 | 8.68e-57 | 194 |
| Msa1454850 | AT2G32770.1 | 31.738 | 397 | 168 | 7 | 142 | 464 | 138 | 505 | 1.39e-49 | 177 |
| Msa1454850 | AT1G52940.1 | 40.088 | 227 | 116 | 11 | 99 | 307 | 17 | 241 | 9.39e-33 | 125 |
| Msa1454850 | AT2G03450.1 | 26.049 | 453 | 256 | 15 | 99 | 477 | 145 | 592 | 3.83e-28 | 118 |
| Msa1454850 | AT1G13900.1 | 31.507 | 292 | 158 | 8 | 224 | 477 | 305 | 592 | 1.49e-27 | 117 |
| Msa1454850 | AT5G50400.2 | 27.308 | 260 | 159 | 8 | 218 | 453 | 255 | 508 | 3.82e-20 | 94.0 |
| Msa1454850 | AT5G50400.1 | 26.000 | 350 | 204 | 12 | 153 | 453 | 237 | 580 | 4.72e-20 | 94.0 |
| Msa1454850 | AT1G13750.1 | 26.389 | 360 | 190 | 13 | 153 | 453 | 239 | 582 | 6.56e-19 | 90.1 |
| Msa1454850 | AT4G24890.1 | 27.381 | 252 | 149 | 9 | 218 | 444 | 331 | 573 | 2.21e-18 | 88.6 |
Find 123 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCTTCATTTGTAGAATA+TGG | 0.176309 | tig0035452:+21349 | Msa1454850:CDS |
| AGACATGACATGAATCTATT+AGG | 0.226505 | tig0035452:-23096 | Msa1454850:intergenic |
| GACTTGGAATTGTTTGTAAA+TGG | 0.231133 | tig0035452:+23209 | Msa1454850:three_prime_UTR |
| CACCATCACCAATAGTTATA+TGG | 0.252632 | tig0035452:-22695 | Msa1454850:intergenic |
| AGTAAAGCTAGTAATTTCTT+TGG | 0.259237 | tig0035452:+23239 | Msa1454850:three_prime_UTR |
| AAGATACACCATAGTATAAT+TGG | 0.261358 | tig0035452:+21448 | Msa1454850:CDS |
| CTGATTGTATGCAACATCTT+TGG | 0.275554 | tig0035452:+21674 | Msa1454850:CDS |
| CAGCTCACCATGACCAAAAC+TGG | 0.283751 | tig0035452:-22922 | Msa1454850:intergenic |
| ATATGATGTTTACCTTCTTC+CGG | 0.295930 | tig0035452:+21636 | Msa1454850:CDS |
| CCAGCCACAGCAAAAGTAAT+TGG | 0.296149 | tig0035452:-21556 | Msa1454850:intergenic |
| CAATTAAGGCCGATGATATC+TGG | 0.304317 | tig0035452:+23003 | Msa1454850:CDS |
| TAAACTCAAGTCATGCCTTC+TGG | 0.322543 | tig0035452:+22952 | Msa1454850:CDS |
| GCCTATGAGCTAAGCCTTCT+CGG | 0.323237 | tig0035452:-22722 | Msa1454850:intergenic |
| TTTGCTGTGGCTGGCGATCT+TGG | 0.323641 | tig0035452:+21565 | Msa1454850:CDS |
| TATGATGTTTACCTTCTTCC+GGG | 0.355153 | tig0035452:+21637 | Msa1454850:CDS |
| GAATTCCGTGAAGCCAGTTT+TGG | 0.358064 | tig0035452:+22909 | Msa1454850:CDS |
| AAAGTAATTGGAAATTTAGA+TGG | 0.363207 | tig0035452:-21544 | Msa1454850:intergenic |
| CCATAGTATAATTGGACCTT+TGG | 0.363950 | tig0035452:+21456 | Msa1454850:CDS |
| TTGTATCGTATAATTCTAGA+TGG | 0.365272 | tig0035452:+21800 | Msa1454850:CDS |
| AAGAATATGATGACATCATT+AGG | 0.369279 | tig0035452:+20195 | Msa1454850:five_prime_UTR |
| TGATAATGACGAGTCAATTA+AGG | 0.376333 | tig0035452:+22989 | Msa1454850:CDS |
| TGACAGAAACGCGTGTATAA+TGG | 0.379695 | tig0035452:+22648 | Msa1454850:intron |
| TGATATCTGGATAACCTCTT+TGG | 0.380204 | tig0035452:+23016 | Msa1454850:CDS |
| CCAAAGGTCCAATTATACTA+TGG | 0.391194 | tig0035452:-21456 | Msa1454850:intergenic |
| TGATTGTATGCAACATCTTT+GGG | 0.398477 | tig0035452:+21675 | Msa1454850:CDS |
| GACATGACATGAATCTATTA+GGG | 0.411709 | tig0035452:-23095 | Msa1454850:intergenic |
| AGCGTTGATTTAGTTCTTGC+TGG | 0.416104 | tig0035452:+22516 | Msa1454850:CDS |
| CATGGTGATGTTGTCAAAGT+TGG | 0.417007 | tig0035452:-20297 | Msa1454850:intergenic |
| CAACATCTTTGGGACTCGTT+TGG | 0.426824 | tig0035452:+21685 | Msa1454850:CDS |
| AATTCTGACCACTTTGGTTG+TGG | 0.430371 | tig0035452:-22891 | Msa1454850:intergenic |
| GGTGTTCATGTTATCATGCT+AGG | 0.430528 | tig0035452:+21883 | Msa1454850:CDS |
| ATCCCAACCTTACCCTCAAC+AGG | 0.435642 | tig0035452:+20448 | Msa1454850:CDS |
| AGAATGGTTGTCTTGGTTTG+AGG | 0.438797 | tig0035452:+21239 | Msa1454850:intron |
| AGTTTGACCTGTTGAGGGTA+AGG | 0.448971 | tig0035452:-20455 | Msa1454850:intergenic |
| CATGACCAAAACTGGCTTCA+CGG | 0.449213 | tig0035452:-22914 | Msa1454850:intergenic |
| TGTCAAAGGTGGACAGGAAA+AGG | 0.453174 | tig0035452:+22382 | Msa1454850:CDS |
| GCTGGCGATCTTGGTCAAAC+TGG | 0.454476 | tig0035452:+21574 | Msa1454850:CDS |
| GTATATATACTCTAAGGACT+TGG | 0.459869 | tig0035452:+23193 | Msa1454850:three_prime_UTR |
| ATGTTTGTCATCAGTTATCC+AGG | 0.471536 | tig0035452:-21326 | Msa1454850:intergenic |
| CAAGTCATGCCTTCTGGAGT+TGG | 0.472571 | tig0035452:+22958 | Msa1454850:CDS |
| GGCACCGTCCATATAACTAT+TGG | 0.473838 | tig0035452:+22687 | Msa1454850:CDS |
| AACAAGGCTCACCAAGGCGC+AGG | 0.474464 | tig0035452:+22450 | Msa1454850:CDS |
| GACCTGTTGAGGGTAAGGTT+GGG | 0.475250 | tig0035452:-20450 | Msa1454850:intergenic |
| TGACCTGTTGAGGGTAAGGT+TGG | 0.482503 | tig0035452:-20451 | Msa1454850:intergenic |
| ACCGAGAAGGCTTAGCTCAT+AGG | 0.485264 | tig0035452:+22721 | Msa1454850:CDS |
| ACGCGTGTATAATGGAAGAT+TGG | 0.486289 | tig0035452:+22656 | Msa1454850:CDS |
| AAAGAGAGTTTGACCTGTTG+AGG | 0.487017 | tig0035452:-20461 | Msa1454850:intergenic |
| AAGAATGAATTTGAGTTCCA+TGG | 0.488430 | tig0035452:-20315 | Msa1454850:intergenic |
| TCTAAGCAGAATGGTTGTCT+TGG | 0.489919 | tig0035452:+21232 | Msa1454850:intron |
| GTTGATCCACTTTCCTCAAA+CGG | 0.490751 | tig0035452:-21829 | Msa1454850:intergenic |
| ACTTAAACATTCCATGGCCA+TGG | 0.491149 | tig0035452:+20417 | Msa1454850:CDS |
| TAGATGGAAAATGCCGTTTG+AGG | 0.495189 | tig0035452:+21816 | Msa1454850:CDS |
| ATATAAAATATAATTATAAG+AGG | 0.502258 | tig0035452:-21416 | Msa1454850:intergenic |
| ATTCATGTCATGTCTGCTAC+AGG | 0.504002 | tig0035452:+23104 | Msa1454850:three_prime_UTR |
| GTTCCATATTCTACAAATGA+AGG | 0.509529 | tig0035452:-21352 | Msa1454850:intergenic |
| TCATATCATCCCCTGCGCCT+TGG | 0.511346 | tig0035452:-22461 | Msa1454850:intergenic |
| AAGAGAGTTTGACCTGTTGA+GGG | 0.512663 | tig0035452:-20460 | Msa1454850:intergenic |
| AAGATCTGTCAAAGGTGGAC+AGG | 0.518140 | tig0035452:+22376 | Msa1454850:CDS |
| ATGAAAGATCACCCGGAAGA+AGG | 0.520658 | tig0035452:-21648 | Msa1454850:intergenic |
| GGACTCGTTTGGTAGGCTTG+TGG | 0.525474 | tig0035452:+21696 | Msa1454850:CDS |
| CAGGTACATATATCTCTGGC+AGG | 0.528508 | tig0035452:+21283 | Msa1454850:CDS |
| GCGATCTTGGTCAAACTGGT+TGG | 0.528945 | tig0035452:+21578 | Msa1454850:CDS |
| CACGGCCTTGCACTAGCAAA+CGG | 0.529732 | tig0035452:-21721 | Msa1454850:intergenic |
| TTTCCTTCTGTTACCATCCA+CGG | 0.529767 | tig0035452:-21739 | Msa1454850:intergenic |
| ATGGTGATGTTGTCAAAGTT+GGG | 0.531195 | tig0035452:-20296 | Msa1454850:intergenic |
| TCACGGAATTCTGACCACTT+TGG | 0.536302 | tig0035452:-22897 | Msa1454850:intergenic |
| ATAAGAACAAACATGAGCTC+AGG | 0.537422 | tig0035452:+23057 | Msa1454850:CDS |
| GTAATTGGAAATTTAGATGG+AGG | 0.539372 | tig0035452:-21541 | Msa1454850:intergenic |
| GTGTTCATGTTATCATGCTA+GGG | 0.541956 | tig0035452:+21884 | Msa1454850:CDS |
| CTTAAACATTCCATGGCCAT+GGG | 0.543217 | tig0035452:+20418 | Msa1454850:CDS |
| CATATAACTATTGGTGATGG+TGG | 0.543864 | tig0035452:+22696 | Msa1454850:CDS |
| ATAACCTCTTTGGTAAGCTC+AGG | 0.544896 | tig0035452:+23026 | Msa1454850:CDS |
| TGCTAGTGCAAGGCCGTGGA+TGG | 0.546368 | tig0035452:+21726 | Msa1454850:CDS |
| TGGAGCCGTTTGCTAGTGCA+AGG | 0.547738 | tig0035452:+21716 | Msa1454850:CDS |
| ATGCCTTCTGGAGTTGGCAT+AGG | 0.549272 | tig0035452:+22964 | Msa1454850:CDS |
| GATTTAGAATCCCATGGCCA+TGG | 0.551935 | tig0035452:-20428 | Msa1454850:intergenic |
| TACAGTAACTAGTGGAAGGA+AGG | 0.556578 | tig0035452:-20270 | Msa1454850:intergenic |
| ATTATACGATACAAATTCAT+CGG | 0.559189 | tig0035452:-21791 | Msa1454850:intergenic |
| TGAAATAACACAAGCAGCCA+AGG | 0.561724 | tig0035452:-22408 | Msa1454850:intergenic |
| AGAGCAATACAGATGGCTAA+AGG | 0.563220 | tig0035452:+21933 | Msa1454850:CDS |
| ACAAGGCTCACCAAGGCGCA+GGG | 0.565155 | tig0035452:+22451 | Msa1454850:CDS |
| TAAAATATAATTATAAGAGG+TGG | 0.567180 | tig0035452:-21413 | Msa1454850:intergenic |
| ATAAAACATAAGATCAGAAG+TGG | 0.571378 | tig0035452:+20224 | Msa1454850:CDS |
| CGTTTGCTAGTGCAAGGCCG+TGG | 0.571538 | tig0035452:+21722 | Msa1454850:CDS |
| ATCTTTGGGACTCGTTTGGT+AGG | 0.580248 | tig0035452:+21689 | Msa1454850:CDS |
| AAAATGCCGTTTGAGGAAAG+TGG | 0.584130 | tig0035452:+21823 | Msa1454850:CDS |
| AACATATTGATCAGCAGTGA+CGG | 0.585626 | tig0035452:-20375 | Msa1454850:intergenic |
| AACTAGTGGAAGGAAGGAAG+AGG | 0.597308 | tig0035452:-20264 | Msa1454850:intergenic |
| GGTTGGGATTTAGAATCCCA+TGG | 0.602227 | tig0035452:-20434 | Msa1454850:intergenic |
| GTCCATATAACTATTGGTGA+TGG | 0.602339 | tig0035452:+22693 | Msa1454850:CDS |
| TTGTGTTATTTCACGTGCCG+TGG | 0.602886 | tig0035452:+22418 | Msa1454850:CDS |
| GTAGAATATGGAACATTACC+TGG | 0.603088 | tig0035452:+21361 | Msa1454850:CDS |
| GGATGATATGATGACAGTCA+TGG | 0.603599 | tig0035452:+22473 | Msa1454850:CDS |
| TTGGGTATTACAGTAACTAG+TGG | 0.604113 | tig0035452:-20278 | Msa1454850:intergenic |
| TACATGGTATTATATTCCAA+AGG | 0.607049 | tig0035452:-21472 | Msa1454850:intergenic |
| ATTCCTATGCCAACTCCAGA+AGG | 0.608575 | tig0035452:-22967 | Msa1454850:intergenic |
| GCATCCTGAGCTTACCAAAG+AGG | 0.609678 | tig0035452:-23030 | Msa1454850:intergenic |
| GGTGATGGTGGAAACCGAGA+AGG | 0.616947 | tig0035452:+22708 | Msa1454850:CDS |
| AGATATGATTCAATATCTGA+AGG | 0.617637 | tig0035452:+21385 | Msa1454850:CDS |
| AGAGGTTATCCAGATATCAT+CGG | 0.619399 | tig0035452:-23012 | Msa1454850:intergenic |
| TCAGCATATGAAAGATCACC+CGG | 0.620769 | tig0035452:-21655 | Msa1454850:intergenic |
| AACAGAAGGAAATCATGAAG+AGG | 0.625469 | tig0035452:+21750 | Msa1454850:CDS |
| TGGACAGGAAAAGGACACCT+TGG | 0.626483 | tig0035452:+22391 | Msa1454850:CDS |
| ACGCTGGCAGCATAAAGCAA+TGG | 0.627780 | tig0035452:-22498 | Msa1454850:intergenic |
| ACAAATTCATCGGTTAACAA+TGG | 0.636241 | tig0035452:-21781 | Msa1454850:intergenic |
| TCTACAGGAAGATCTGTCAA+AGG | 0.636721 | tig0035452:+22368 | Msa1454850:intron |
| ACAGACACATGAGAATAACC+TGG | 0.637151 | tig0035452:+21308 | Msa1454850:CDS |
| ACAGGAAGATCTGTCAAAGG+TGG | 0.639546 | tig0035452:+22371 | Msa1454850:intron |
| AGCAAGAACTAAATCAACGC+TGG | 0.641446 | tig0035452:-22514 | Msa1454850:intergenic |
| TGGTTGGACTAAATCAACAT+TGG | 0.647792 | tig0035452:+21594 | Msa1454850:CDS |
| ATCACCAATAGTTATATGGA+CGG | 0.650019 | tig0035452:-22691 | Msa1454850:intergenic |
| AATGGAAGATTGGATCCTTG+TGG | 0.651657 | tig0035452:+22666 | Msa1454850:CDS |
| AGGCCGTGGATGGTAACAGA+AGG | 0.651742 | tig0035452:+21736 | Msa1454850:CDS |
| GATATTGAATCATATCTACC+AGG | 0.651988 | tig0035452:-21379 | Msa1454850:intergenic |
| ACATATATCCACAACCAAAG+TGG | 0.656207 | tig0035452:+22883 | Msa1454850:CDS |
| CAAGGCTCACCAAGGCGCAG+GGG | 0.658372 | tig0035452:+22452 | Msa1454850:CDS |
| GTTATATGGACGGTGCCACA+AGG | 0.660432 | tig0035452:-22681 | Msa1454850:intergenic |
| GTATTACAGTAACTAGTGGA+AGG | 0.664352 | tig0035452:-20274 | Msa1454850:intergenic |
| CAACTTTGACAACATCACCA+TGG | 0.667387 | tig0035452:+20298 | Msa1454850:CDS |
| AGTACTCAGAGCAATACAGA+TGG | 0.679754 | tig0035452:+21926 | Msa1454850:CDS |
| AATAGTAACAAGGCTCACCA+AGG | 0.684934 | tig0035452:+22444 | Msa1454850:CDS |
| GCCGTGGTATAATAGTAACA+AGG | 0.700336 | tig0035452:+22434 | Msa1454850:CDS |
| GCCTTGTTACTATTATACCA+CGG | 0.702987 | tig0035452:-22435 | Msa1454840:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTTTTTTTTTGATTC+TGG | + | tig0035452:20544-20563 | Msa1454850:intron | 10.0% |
| !!! | AAAAAATCTCATATTTTTTT+TGG | - | tig0035452:20780-20799 | Msa1454850:intergenic | 10.0% |
| !! | TTATGTATGTTTATTTATTT+AGG | + | tig0035452:20905-20924 | Msa1454850:intron | 10.0% |
| !! | TATGTATGTTTATTTATTTA+GGG | + | tig0035452:20906-20925 | Msa1454850:intron | 10.0% |
| !! | TTTAATTGCTTGTATTATTA+GGG | + | tig0035452:20609-20628 | Msa1454850:intron | 15.0% |
| !! | TAAAATATAATTATAAGAGG+TGG | - | tig0035452:21416-21435 | Msa1454850:intergenic | 15.0% |
| !!! | AATTATATTTTATATAGCTC+AGG | + | tig0035452:21424-21443 | Msa1454850:CDS | 15.0% |
| !!! | TTTATTTTAATTTCTAAGCA+CGG | + | tig0035452:22586-22605 | Msa1454850:intron | 15.0% |
| !!! | TAAAAATTTGTTATCTGAAT+TGG | + | tig0035452:22771-22790 | Msa1454850:intron | 15.0% |
| !!! | ATAGTAGTTCTATTTCTATA+GGG | - | tig0035452:20587-20606 | Msa1454850:intergenic | 20.0% |
| !!! | AATAGTAGTTCTATTTCTAT+AGG | - | tig0035452:20588-20607 | Msa1454850:intergenic | 20.0% |
| !! | GTTTAATTGCTTGTATTATT+AGG | + | tig0035452:20608-20627 | Msa1454850:intron | 20.0% |
| !! | TTAATTGCTTGTATTATTAG+GGG | + | tig0035452:20610-20629 | Msa1454850:intron | 20.0% |
| !!! | CTAAGAATCTGAAATTTAAT+AGG | - | tig0035452:20958-20977 | Msa1454850:intergenic | 20.0% |
| !!! | GAAATTCATATAACTACTTT+TGG | - | tig0035452:21032-21051 | Msa1454850:intergenic | 20.0% |
| !! | AAAGTAATTGGAAATTTAGA+TGG | - | tig0035452:21547-21566 | Msa1454850:intergenic | 20.0% |
| !! | ATTATACGATACAAATTCAT+CGG | - | tig0035452:21794-21813 | Msa1454850:intergenic | 20.0% |
| !! | ATTACACTTATGGAAATATA+CGG | - | tig0035452:21970-21989 | Msa1454850:intergenic | 20.0% |
| !! | TATATTTCCATAAGTGTAAT+GGG | + | tig0035452:21970-21989 | Msa1454850:intron | 20.0% |
| !! | AACTTATATGAAAAACAGTT+TGG | - | tig0035452:22121-22140 | Msa1454850:intergenic | 20.0% |
| !! | AATAAAGGCTAAACTATAAA+AGG | - | tig0035452:22572-22591 | Msa1454850:intergenic | 20.0% |
| !! | GTGCTTAGAAATTAAAATAA+AGG | - | tig0035452:22587-22606 | Msa1454850:intergenic | 20.0% |
| !!! | AAATTTTTATAATGTGTCTC+TGG | - | tig0035452:22760-22779 | Msa1454850:intergenic | 20.0% |
| !! | AAACAACCTTAATAGTTATA+TGG | - | tig0035452:22815-22834 | Msa1454850:intergenic | 20.0% |
| !! | TAACTATTAAGGTTGTTTAT+TGG | + | tig0035452:22817-22836 | Msa1454850:intron | 20.0% |
| !!! | CTTTTTGTATATATACTCTA+AGG | + | tig0035452:23187-23206 | Msa1454850:three_prime_UTR | 20.0% |
| ! | AAGAATATGATGACATCATT+AGG | + | tig0035452:20195-20214 | Msa1454850:five_prime_UTR | 25.0% |
| ! | ATAAAACATAAGATCAGAAG+TGG | + | tig0035452:20224-20243 | Msa1454850:CDS | 25.0% |
| !!! | TTAAGTTTTTTCTTGGCAAA+GGG | - | tig0035452:20403-20422 | Msa1454850:intergenic | 25.0% |
| !!! | TTTAAGTTTTTTCTTGGCAA+AGG | - | tig0035452:20404-20423 | Msa1454850:intergenic | 25.0% |
| !!! | GGAATGTTTAAGTTTTTTCT+TGG | - | tig0035452:20410-20429 | Msa1454850:intergenic | 25.0% |
| ! | GAAAAAACTTAAACATTCCA+TGG | + | tig0035452:20411-20430 | Msa1454850:CDS | 25.0% |
| ! | ACCTATTAAATTTCAGATTC+TGG | + | tig0035452:20930-20949 | Msa1454850:intron | 25.0% |
| !! | ACCAGAATCTGAAATTTAAT+AGG | - | tig0035452:20934-20953 | Msa1454850:intergenic | 25.0% |
| ! | AGATATGATTCAATATCTGA+AGG | + | tig0035452:21385-21404 | Msa1454850:CDS | 25.0% |
| ! | AAGATACACCATAGTATAAT+TGG | + | tig0035452:21448-21467 | Msa1454850:CDS | 25.0% |
| ! | TACATGGTATTATATTCCAA+AGG | - | tig0035452:21475-21494 | Msa1454850:intergenic | 25.0% |
| ! | TTGTATCGTATAATTCTAGA+TGG | + | tig0035452:21800-21819 | Msa1454850:CDS | 25.0% |
| !!! | TATTATTCTTTTGAAGTTGC+AGG | + | tig0035452:21862-21881 | Msa1454850:CDS | 25.0% |
| ! | GTATATTTCCATAAGTGTAA+TGG | + | tig0035452:21969-21988 | Msa1454850:intron | 25.0% |
| !! | TTGTAAACGTTTCTAAAGAA+CGG | - | tig0035452:22331-22350 | Msa1454850:intergenic | 25.0% |
| ! | ATCTGTCCATATAACTATTA+AGG | + | tig0035452:22806-22825 | Msa1454850:intron | 25.0% |
| ! | AGTAAAGCTAGTAATTTCTT+TGG | + | tig0035452:23239-23258 | Msa1454850:three_prime_UTR | 25.0% |
| ! | AAGAATGAATTTGAGTTCCA+TGG | - | tig0035452:20318-20337 | Msa1454850:intergenic | 30.0% |
| TTAGACTACAAAATTCTGAG+TGG | + | tig0035452:20974-20993 | Msa1454850:intron | 30.0% | |
| TGAAATGCTGGAATTATGTT+TGG | - | tig0035452:21149-21168 | Msa1454850:intergenic | 30.0% | |
| ! | AGTGTCTATATTTGAAATGC+TGG | - | tig0035452:21161-21180 | Msa1454850:intergenic | 30.0% |
| AAATCCAAACACGAACAAAT+AGG | + | tig0035452:21186-21205 | Msa1454850:intron | 30.0% | |
| !!! | TGACAGAGTTTTGATTTTTC+AGG | + | tig0035452:21264-21283 | Msa1454850:CDS | 30.0% |
| !!! | TTTTCAGGTACATATATCTC+TGG | + | tig0035452:21279-21298 | Msa1454850:CDS | 30.0% |
| TCACCTTCATTTGTAGAATA+TGG | + | tig0035452:21349-21368 | Msa1454850:CDS | 30.0% | |
| GTTCCATATTCTACAAATGA+AGG | - | tig0035452:21355-21374 | Msa1454850:intergenic | 30.0% | |
| GATATTGAATCATATCTACC+AGG | - | tig0035452:21382-21401 | Msa1454850:intergenic | 30.0% | |
| !! | ACCATGTATTTTTATCGATG+TGG | + | tig0035452:21487-21506 | Msa1454850:CDS | 30.0% |
| !! | ATGTATTTTTATCGATGTGG+CGG | + | tig0035452:21490-21509 | Msa1454850:CDS | 30.0% |
| GTAATTGGAAATTTAGATGG+AGG | - | tig0035452:21544-21563 | Msa1454850:intergenic | 30.0% | |
| !! | ATTTCCAATTACTTTTGCTG+TGG | + | tig0035452:21552-21571 | Msa1454850:CDS | 30.0% |
| ATATGATGTTTACCTTCTTC+CGG | + | tig0035452:21636-21655 | Msa1454850:CDS | 30.0% | |
| TGATTGTATGCAACATCTTT+GGG | + | tig0035452:21675-21694 | Msa1454850:CDS | 30.0% | |
| ! | ACAAATTCATCGGTTAACAA+TGG | - | tig0035452:21784-21803 | Msa1454850:intergenic | 30.0% |
| TCATATAAGTGCTTATGTGT+GGG | + | tig0035452:22073-22092 | Msa1454850:intron | 30.0% | |
| TTTCTTCATTTCTCATCTAC+AGG | + | tig0035452:22353-22372 | Msa1454850:intron | 30.0% | |
| !! | AATGGAAATTTGGTCTTAAG+TGG | + | tig0035452:22612-22631 | Msa1454850:intron | 30.0% |
| ATCACCAATAGTTATATGGA+CGG | - | tig0035452:22694-22713 | Msa1454850:intergenic | 30.0% | |
| CAACAATGATGTAAGAATAC+AGG | - | tig0035452:22854-22873 | Msa1454850:intergenic | 30.0% | |
| !! | CTTACATCATTGTTGTTTAC+AGG | + | tig0035452:22859-22878 | Msa1454850:intron | 30.0% |
| ! | TGATAATGACGAGTCAATTA+AGG | + | tig0035452:22989-23008 | Msa1454850:CDS | 30.0% |
| GACATGACATGAATCTATTA+GGG | - | tig0035452:23098-23117 | Msa1454850:intergenic | 30.0% | |
| AGACATGACATGAATCTATT+AGG | - | tig0035452:23099-23118 | Msa1454850:intergenic | 30.0% | |
| ! | GTATATATACTCTAAGGACT+TGG | + | tig0035452:23193-23212 | Msa1454850:three_prime_UTR | 30.0% |
| GACTTGGAATTGTTTGTAAA+TGG | + | tig0035452:23209-23228 | Msa1454850:three_prime_UTR | 30.0% | |
| GTATTACAGTAACTAGTGGA+AGG | - | tig0035452:20277-20296 | Msa1454850:intergenic | 35.0% | |
| TTGGGTATTACAGTAACTAG+TGG | - | tig0035452:20281-20300 | Msa1454850:intergenic | 35.0% | |
| ! | ATGGTGATGTTGTCAAAGTT+GGG | - | tig0035452:20299-20318 | Msa1454850:intergenic | 35.0% |
| AACATATTGATCAGCAGTGA+CGG | - | tig0035452:20378-20397 | Msa1454850:intergenic | 35.0% | |
| CATTAAAATGCGTGTTAGCT+GGG | - | tig0035452:20734-20753 | Msa1454850:intergenic | 35.0% | |
| TCATTAAAATGCGTGTTAGC+TGG | - | tig0035452:20735-20754 | Msa1454850:intergenic | 35.0% | |
| AATGCCTATTTGTTCGTGTT+TGG | - | tig0035452:21193-21212 | Msa1454850:intergenic | 35.0% | |
| ACACGAACAAATAGGCATTA+TGG | + | tig0035452:21194-21213 | Msa1454850:intron | 35.0% | |
| CACGAACAAATAGGCATTAT+GGG | + | tig0035452:21195-21214 | Msa1454850:intron | 35.0% | |
| TTCTGTACATCTAAGCAGAA+TGG | + | tig0035452:21223-21242 | Msa1454850:intron | 35.0% | |
| ATGTTTGTCATCAGTTATCC+AGG | - | tig0035452:21329-21348 | Msa1454850:intergenic | 35.0% | |
| GTAGAATATGGAACATTACC+TGG | + | tig0035452:21361-21380 | Msa1454850:CDS | 35.0% | |
| CCAAAGGTCCAATTATACTA+TGG | - | tig0035452:21459-21478 | Msa1454850:intergenic | 35.0% | |
| CCATAGTATAATTGGACCTT+TGG | + | tig0035452:21456-21475 | Msa1454850:CDS | 35.0% | |
| GCCACATCGATAAAAATACA+TGG | - | tig0035452:21491-21510 | Msa1454850:intergenic | 35.0% | |
| TGGTTGGACTAAATCAACAT+TGG | + | tig0035452:21594-21613 | Msa1454850:CDS | 35.0% | |
| TATGATGTTTACCTTCTTCC+GGG | + | tig0035452:21637-21656 | Msa1454850:CDS | 35.0% | |
| CTGATTGTATGCAACATCTT+TGG | + | tig0035452:21674-21693 | Msa1454850:CDS | 35.0% | |
| AACAGAAGGAAATCATGAAG+AGG | + | tig0035452:21750-21769 | Msa1454850:CDS | 35.0% | |
| GTGTTCATGTTATCATGCTA+GGG | + | tig0035452:21884-21903 | Msa1454850:CDS | 35.0% | |
| ATCCATCATACATGTGCTAA+AGG | + | tig0035452:21993-22012 | Msa1454850:intron | 35.0% | |
| AACCTTTAGCACATGTATGA+TGG | - | tig0035452:21998-22017 | Msa1454850:intergenic | 35.0% | |
| ATGTGCTAAAGGTTTAGACT+AGG | + | tig0035452:22004-22023 | Msa1454850:intron | 35.0% | |
| GTTTAGACTAGGATTCTGTT+TGG | + | tig0035452:22015-22034 | Msa1454850:intron | 35.0% | |
| CACATAAGCACTTATATGAC+AGG | - | tig0035452:22072-22091 | Msa1454850:intergenic | 35.0% | |
| GTCATATAAGTGCTTATGTG+TGG | + | tig0035452:22072-22091 | Msa1454850:intron | 35.0% | |
| AAGCTAACTTGAAGAGCTTA+TGG | + | tig0035452:22156-22175 | Msa1454850:intron | 35.0% | |
| AGACTGTTTGGTAGAGTTTA+TGG | - | tig0035452:22222-22241 | Msa1454850:intergenic | 35.0% | |
| TAAACACTAGTGAGACTGTT+TGG | - | tig0035452:22234-22253 | Msa1454850:intergenic | 35.0% | |
| CTCAAATAAGTCAACCCAAA+CGG | + | tig0035452:22268-22287 | Msa1454850:intron | 35.0% | |
| TCAAATAAGTCAACCCAAAC+GGG | + | tig0035452:22269-22288 | Msa1454850:intron | 35.0% | |
| TTGTTATCAAATGCCCGTTT+GGG | - | tig0035452:22285-22304 | Msa1454850:intergenic | 35.0% | |
| ! | TTTGTTATCAAATGCCCGTT+TGG | - | tig0035452:22286-22305 | Msa1454850:intergenic | 35.0% |
| ! | GCCTTGTTACTATTATACCA+CGG | - | tig0035452:22438-22457 | Msa1454850:intergenic | 35.0% |
| AATTTCTAAGCACGGTTCAA+TGG | + | tig0035452:22594-22613 | Msa1454850:intron | 35.0% | |
| GTCCATATAACTATTGGTGA+TGG | + | tig0035452:22693-22712 | Msa1454850:CDS | 35.0% | |
| CACCATCACCAATAGTTATA+TGG | - | tig0035452:22698-22717 | Msa1454850:intergenic | 35.0% | |
| !! | CATATAACTATTGGTGATGG+TGG | + | tig0035452:22696-22715 | Msa1454850:CDS | 35.0% |
| ACATATATCCACAACCAAAG+TGG | + | tig0035452:22883-22902 | Msa1454850:CDS | 35.0% | |
| AGAGGTTATCCAGATATCAT+CGG | - | tig0035452:23015-23034 | Msa1454850:intergenic | 35.0% | |
| TGATATCTGGATAACCTCTT+TGG | + | tig0035452:23016-23035 | Msa1454850:CDS | 35.0% | |
| ATAAGAACAAACATGAGCTC+AGG | + | tig0035452:23057-23076 | Msa1454850:CDS | 35.0% | |
| TACAGTAACTAGTGGAAGGA+AGG | - | tig0035452:20273-20292 | Msa1454850:intergenic | 40.0% | |
| ! | CATGGTGATGTTGTCAAAGT+TGG | - | tig0035452:20300-20319 | Msa1454850:intergenic | 40.0% |
| CAACTTTGACAACATCACCA+TGG | + | tig0035452:20298-20317 | Msa1454850:CDS | 40.0% | |
| ACTTAAACATTCCATGGCCA+TGG | + | tig0035452:20417-20436 | Msa1454850:CDS | 40.0% | |
| CTTAAACATTCCATGGCCAT+GGG | + | tig0035452:20418-20437 | Msa1454850:CDS | 40.0% | |
| AAGAGAGTTTGACCTGTTGA+GGG | - | tig0035452:20463-20482 | Msa1454850:intergenic | 40.0% | |
| AAAGAGAGTTTGACCTGTTG+AGG | - | tig0035452:20464-20483 | Msa1454850:intergenic | 40.0% | |
| TCTAAGCAGAATGGTTGTCT+TGG | + | tig0035452:21232-21251 | Msa1454850:intron | 40.0% | |
| ! | AGAATGGTTGTCTTGGTTTG+AGG | + | tig0035452:21239-21258 | Msa1454850:intron | 40.0% |
| ACAGACACATGAGAATAACC+TGG | + | tig0035452:21308-21327 | Msa1454850:CDS | 40.0% | |
| !!! | AGGAGTTTTGAGCTTGAACT+CGG | - | tig0035452:21524-21543 | Msa1454850:intergenic | 40.0% |
| TCAGCATATGAAAGATCACC+CGG | - | tig0035452:21658-21677 | Msa1454850:intergenic | 40.0% | |
| TTTCCTTCTGTTACCATCCA+CGG | - | tig0035452:21742-21761 | Msa1454850:intergenic | 40.0% | |
| ! | TAGATGGAAAATGCCGTTTG+AGG | + | tig0035452:21816-21835 | Msa1454850:CDS | 40.0% |
| ! | AAAATGCCGTTTGAGGAAAG+TGG | + | tig0035452:21823-21842 | Msa1454850:CDS | 40.0% |
| GTTGATCCACTTTCCTCAAA+CGG | - | tig0035452:21832-21851 | Msa1454850:intergenic | 40.0% | |
| GGTGTTCATGTTATCATGCT+AGG | + | tig0035452:21883-21902 | Msa1454850:CDS | 40.0% | |
| AGTACTCAGAGCAATACAGA+TGG | + | tig0035452:21926-21945 | Msa1454850:CDS | 40.0% | |
| AGAGCAATACAGATGGCTAA+AGG | + | tig0035452:21933-21952 | Msa1454850:CDS | 40.0% | |
| GATGGATCCCATTACACTTA+TGG | - | tig0035452:21980-21999 | Msa1454850:intergenic | 40.0% | |
| ! | CGGGCATTTGATAACAAACA+TGG | + | tig0035452:22288-22307 | Msa1454850:intron | 40.0% |
| TCTACAGGAAGATCTGTCAA+AGG | + | tig0035452:22368-22387 | Msa1454850:intron | 40.0% | |
| TGAAATAACACAAGCAGCCA+AGG | - | tig0035452:22411-22430 | Msa1454850:intergenic | 40.0% | |
| GCCGTGGTATAATAGTAACA+AGG | + | tig0035452:22434-22453 | Msa1454850:CDS | 40.0% | |
| AATAGTAACAAGGCTCACCA+AGG | + | tig0035452:22444-22463 | Msa1454850:CDS | 40.0% | |
| GGATGATATGATGACAGTCA+TGG | + | tig0035452:22473-22492 | Msa1454850:CDS | 40.0% | |
| AGCAAGAACTAAATCAACGC+TGG | - | tig0035452:22517-22536 | Msa1454850:intergenic | 40.0% | |
| !! | AGCGTTGATTTAGTTCTTGC+TGG | + | tig0035452:22516-22535 | Msa1454850:CDS | 40.0% |
| AGCACGGTTCAATGGAAATT+TGG | + | tig0035452:22602-22621 | Msa1454850:intron | 40.0% | |
| TGACAGAAACGCGTGTATAA+TGG | + | tig0035452:22648-22667 | Msa1454850:intron | 40.0% | |
| ! | ACGCGTGTATAATGGAAGAT+TGG | + | tig0035452:22656-22675 | Msa1454850:CDS | 40.0% |
| AATGGAAGATTGGATCCTTG+TGG | + | tig0035452:22666-22685 | Msa1454850:CDS | 40.0% | |
| AATTCTGACCACTTTGGTTG+TGG | - | tig0035452:22894-22913 | Msa1454850:intergenic | 40.0% | |
| TAAACTCAAGTCATGCCTTC+TGG | + | tig0035452:22952-22971 | Msa1454850:CDS | 40.0% | |
| CAATTAAGGCCGATGATATC+TGG | + | tig0035452:23003-23022 | Msa1454850:CDS | 40.0% | |
| ATAACCTCTTTGGTAAGCTC+AGG | + | tig0035452:23026-23045 | Msa1454850:CDS | 40.0% | |
| ATTCATGTCATGTCTGCTAC+AGG | + | tig0035452:23104-23123 | Msa1454850:three_prime_UTR | 40.0% | |
| AACTAGTGGAAGGAAGGAAG+AGG | - | tig0035452:20267-20286 | Msa1454850:intergenic | 45.0% | |
| ! | GATTTAGAATCCCATGGCCA+TGG | - | tig0035452:20431-20450 | Msa1454850:intergenic | 45.0% |
| ! | GGTTGGGATTTAGAATCCCA+TGG | - | tig0035452:20437-20456 | Msa1454850:intergenic | 45.0% |
| AGTTTGACCTGTTGAGGGTA+AGG | - | tig0035452:20458-20477 | Msa1454850:intergenic | 45.0% | |
| CAGGTACATATATCTCTGGC+AGG | + | tig0035452:21283-21302 | Msa1454850:CDS | 45.0% | |
| !!! | TTTTATCGATGTGGCGGACA+AGG | + | tig0035452:21496-21515 | Msa1454850:CDS | 45.0% |
| !!! | GGAGTTTTGAGCTTGAACTC+GGG | - | tig0035452:21523-21542 | Msa1454850:intergenic | 45.0% |
| CCAGCCACAGCAAAAGTAAT+TGG | - | tig0035452:21559-21578 | Msa1454850:intergenic | 45.0% | |
| !! | CCAATTACTTTTGCTGTGGC+TGG | + | tig0035452:21556-21575 | Msa1454850:CDS | 45.0% |
| ATGAAAGATCACCCGGAAGA+AGG | - | tig0035452:21651-21670 | Msa1454850:intergenic | 45.0% | |
| !! | CAACATCTTTGGGACTCGTT+TGG | + | tig0035452:21685-21704 | Msa1454850:CDS | 45.0% |
| !! | ATCTTTGGGACTCGTTTGGT+AGG | + | tig0035452:21689-21708 | Msa1454850:CDS | 45.0% |
| ACAGGAAGATCTGTCAAAGG+TGG | + | tig0035452:22371-22390 | Msa1454850:intron | 45.0% | |
| AAGATCTGTCAAAGGTGGAC+AGG | + | tig0035452:22376-22395 | Msa1454850:CDS | 45.0% | |
| TGTCAAAGGTGGACAGGAAA+AGG | + | tig0035452:22382-22401 | Msa1454850:CDS | 45.0% | |
| !! | TTGTGTTATTTCACGTGCCG+TGG | + | tig0035452:22418-22437 | Msa1454850:CDS | 45.0% |
| GGCACCGTCCATATAACTAT+TGG | + | tig0035452:22687-22706 | Msa1454850:CDS | 45.0% | |
| TCACGGAATTCTGACCACTT+TGG | - | tig0035452:22900-22919 | Msa1454850:intergenic | 45.0% | |
| ! | GAATTCCGTGAAGCCAGTTT+TGG | + | tig0035452:22909-22928 | Msa1454850:CDS | 45.0% |
| ! | CATGACCAAAACTGGCTTCA+CGG | - | tig0035452:22917-22936 | Msa1454850:intergenic | 45.0% |
| ATTCCTATGCCAACTCCAGA+AGG | - | tig0035452:22970-22989 | Msa1454850:intergenic | 45.0% | |
| !!! | TTAAAAAAGTAATTTTTTTA+AGG | - | tig0035452:20705-20724 | Msa1454850:intergenic | 5.0% |
| !! | TTTATTATTTATCTTATTAT+AGG | - | tig0035452:20822-20841 | Msa1454850:intergenic | 5.0% |
| !! | ATATAAAATATAATTATAAG+AGG | - | tig0035452:21419-21438 | Msa1454850:intergenic | 5.0% |
| ATCCCAACCTTACCCTCAAC+AGG | + | tig0035452:20448-20467 | Msa1454850:CDS | 50.0% | |
| GACCTGTTGAGGGTAAGGTT+GGG | - | tig0035452:20453-20472 | Msa1454850:intergenic | 50.0% | |
| TGACCTGTTGAGGGTAAGGT+TGG | - | tig0035452:20454-20473 | Msa1454850:intergenic | 50.0% | |
| GCGATCTTGGTCAAACTGGT+TGG | + | tig0035452:21578-21597 | Msa1454850:CDS | 50.0% | |
| TGGACAGGAAAAGGACACCT+TGG | + | tig0035452:22391-22410 | Msa1454850:CDS | 50.0% | |
| ACGCTGGCAGCATAAAGCAA+TGG | - | tig0035452:22501-22520 | Msa1454850:intergenic | 50.0% | |
| !! | GTTATATGGACGGTGCCACA+AGG | - | tig0035452:22684-22703 | Msa1454850:intergenic | 50.0% |
| ACCGAGAAGGCTTAGCTCAT+AGG | + | tig0035452:22721-22740 | Msa1454850:CDS | 50.0% | |
| GCCTATGAGCTAAGCCTTCT+CGG | - | tig0035452:22725-22744 | Msa1454850:intergenic | 50.0% | |
| !! | CGTGAAGCCAGTTTTGGTCA+TGG | + | tig0035452:22915-22934 | Msa1454850:CDS | 50.0% |
| CAGCTCACCATGACCAAAAC+TGG | - | tig0035452:22925-22944 | Msa1454850:intergenic | 50.0% | |
| !! | CAAGTCATGCCTTCTGGAGT+TGG | + | tig0035452:22958-22977 | Msa1454850:CDS | 50.0% |
| !! | ATGCCTTCTGGAGTTGGCAT+AGG | + | tig0035452:22964-22983 | Msa1454850:CDS | 50.0% |
| GCATCCTGAGCTTACCAAAG+AGG | - | tig0035452:23033-23052 | Msa1454850:intergenic | 50.0% | |
| ! | TTTGCTGTGGCTGGCGATCT+TGG | + | tig0035452:21565-21584 | Msa1454850:CDS | 55.0% |
| GCTGGCGATCTTGGTCAAAC+TGG | + | tig0035452:21574-21593 | Msa1454850:CDS | 55.0% | |
| GGACTCGTTTGGTAGGCTTG+TGG | + | tig0035452:21696-21715 | Msa1454850:CDS | 55.0% | |
| ! | TGGAGCCGTTTGCTAGTGCA+AGG | + | tig0035452:21716-21735 | Msa1454850:CDS | 55.0% |
| CACGGCCTTGCACTAGCAAA+CGG | - | tig0035452:21724-21743 | Msa1454850:intergenic | 55.0% | |
| AGGCCGTGGATGGTAACAGA+AGG | + | tig0035452:21736-21755 | Msa1454850:CDS | 55.0% | |
| TCATATCATCCCCTGCGCCT+TGG | - | tig0035452:22464-22483 | Msa1454850:intergenic | 55.0% | |
| !! | GGTGATGGTGGAAACCGAGA+AGG | + | tig0035452:22708-22727 | Msa1454850:CDS | 55.0% |
| ! | CGTTTGCTAGTGCAAGGCCG+TGG | + | tig0035452:21722-21741 | Msa1454850:CDS | 60.0% |
| TGCTAGTGCAAGGCCGTGGA+TGG | + | tig0035452:21726-21745 | Msa1454850:CDS | 60.0% | |
| AACAAGGCTCACCAAGGCGC+AGG | + | tig0035452:22450-22469 | Msa1454850:CDS | 60.0% | |
| ACAAGGCTCACCAAGGCGCA+GGG | + | tig0035452:22451-22470 | Msa1454850:CDS | 60.0% | |
| CAAGGCTCACCAAGGCGCAG+GGG | + | tig0035452:22452-22471 | Msa1454850:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0035452 | gene | 20195 | 23308 | 20195 | ID=Msa1454850;Name=Msa1454850 |
| tig0035452 | mRNA | 20195 | 23308 | 20195 | ID=Msa1454850-mRNA-1;Parent=Msa1454850;Name=Msa1454850-mRNA-1;_AED=0.08;_eAED=0.08;_QI=23|0.75|0.8|1|1|1|5|208|487 |
| tig0035452 | exon | 20195 | 20469 | 20195 | ID=Msa1454850-mRNA-1:exon:19957;Parent=Msa1454850-mRNA-1 |
| tig0035452 | exon | 21241 | 21954 | 21241 | ID=Msa1454850-mRNA-1:exon:19958;Parent=Msa1454850-mRNA-1 |
| tig0035452 | exon | 22375 | 22563 | 22375 | ID=Msa1454850-mRNA-1:exon:19959;Parent=Msa1454850-mRNA-1 |
| tig0035452 | exon | 22654 | 22742 | 22654 | ID=Msa1454850-mRNA-1:exon:19960;Parent=Msa1454850-mRNA-1 |
| tig0035452 | exon | 22881 | 23308 | 22881 | ID=Msa1454850-mRNA-1:exon:19961;Parent=Msa1454850-mRNA-1 |
| tig0035452 | five_prime_UTR | 20195 | 20217 | 20195 | ID=Msa1454850-mRNA-1:five_prime_utr;Parent=Msa1454850-mRNA-1 |
| tig0035452 | CDS | 20218 | 20469 | 20218 | ID=Msa1454850-mRNA-1:cds;Parent=Msa1454850-mRNA-1 |
| tig0035452 | CDS | 21241 | 21954 | 21241 | ID=Msa1454850-mRNA-1:cds;Parent=Msa1454850-mRNA-1 |
| tig0035452 | CDS | 22375 | 22563 | 22375 | ID=Msa1454850-mRNA-1:cds;Parent=Msa1454850-mRNA-1 |
| tig0035452 | CDS | 22654 | 22742 | 22654 | ID=Msa1454850-mRNA-1:cds;Parent=Msa1454850-mRNA-1 |
| tig0035452 | CDS | 22881 | 23100 | 22881 | ID=Msa1454850-mRNA-1:cds;Parent=Msa1454850-mRNA-1 |
| tig0035452 | three_prime_UTR | 23101 | 23308 | 23101 | ID=Msa1454850-mRNA-1:three_prime_utr;Parent=Msa1454850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
