Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031100 | sp|Q9T096|YIPL6_ARATH | 67.010 | 97 | 32 | 0 | 8 | 104 | 5 | 101 | 8.14e-43 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0031100 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031060 | Msa0031100 | 0.939203 | 1.884943e-99 | -8.615850e-47 |
| Msa0031100 | Msa0877250 | 0.800384 | 1.477897e-48 | -8.615850e-47 |
| Msa0031100 | Msa0974080 | 0.811787 | 5.877569e-51 | -8.615850e-47 |
| Msa0031100 | Msa1111870 | 0.803180 | 3.942960e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031100 | MtrunA17_Chr1g0188931 | 66.667 | 105 | 35 | 0 | 4 | 108 | 1 | 105 | 5.47e-48 | 150 |
| Msa0031100 | MtrunA17_Chr3g0127211 | 67.327 | 101 | 33 | 0 | 4 | 104 | 1 | 101 | 3.65e-45 | 144 |
| Msa0031100 | MtrunA17_Chr8g0346501 | 62.376 | 101 | 38 | 0 | 4 | 104 | 1 | 101 | 4.55e-40 | 130 |
| Msa0031100 | MtrunA17_Chr1g0188951 | 96.552 | 58 | 2 | 0 | 47 | 104 | 1 | 58 | 1.29e-34 | 115 |
| Msa0031100 | MtrunA17_Chr5g0436971 | 45.361 | 97 | 53 | 0 | 8 | 104 | 9 | 105 | 1.24e-29 | 105 |
| Msa0031100 | MtrunA17_Chr3g0113291 | 45.361 | 97 | 53 | 0 | 8 | 104 | 32 | 128 | 2.26e-29 | 105 |
| Msa0031100 | MtrunA17_Chr2g0316921 | 45.361 | 97 | 53 | 0 | 8 | 104 | 9 | 105 | 1.41e-28 | 102 |
| Msa0031100 | MtrunA17_Chr1g0188961 | 75.385 | 65 | 7 | 2 | 107 | 162 | 3 | 67 | 2.07e-27 | 97.8 |
| Msa0031100 | MtrunA17_Chr7g0242231 | 44.330 | 97 | 54 | 0 | 8 | 104 | 9 | 105 | 3.35e-27 | 99.0 |
| Msa0031100 | MtrunA17_Chr8g0360291 | 40.860 | 93 | 55 | 0 | 12 | 104 | 13 | 105 | 1.22e-25 | 95.1 |
| Msa0031100 | MtrunA17_Chr1g0188941 | 70.492 | 61 | 16 | 1 | 92 | 150 | 54 | 114 | 2.74e-25 | 93.6 |
| Msa0031100 | MtrunA17_Chr4g0046851 | 41.304 | 92 | 54 | 0 | 13 | 104 | 14 | 105 | 3.99e-23 | 88.6 |
| Msa0031100 | MtrunA17_Chr5g0418191 | 63.158 | 57 | 19 | 1 | 92 | 146 | 323 | 379 | 1.11e-16 | 76.3 |
| Msa0031100 | MtrunA17_Chr2g0316891 | 43.548 | 62 | 35 | 0 | 43 | 104 | 42 | 103 | 1.19e-16 | 71.6 |
| Msa0031100 | MtrunA17_Chr4g0042831 | 59.649 | 57 | 21 | 1 | 92 | 146 | 281 | 337 | 1.23e-15 | 73.2 |
| Msa0031100 | MtrunA17_Chr3g0101131 | 60.345 | 58 | 21 | 1 | 92 | 147 | 418 | 475 | 1.45e-15 | 73.2 |
| Msa0031100 | MtrunA17_Chr7g0218081 | 59.649 | 57 | 21 | 1 | 92 | 146 | 413 | 469 | 1.77e-15 | 72.8 |
| Msa0031100 | MtrunA17_Chr5g0445311 | 59.649 | 57 | 21 | 1 | 92 | 146 | 367 | 423 | 6.56e-15 | 71.2 |
| Msa0031100 | MtrunA17_Chr3g0079691 | 57.895 | 57 | 22 | 1 | 92 | 146 | 498 | 554 | 1.58e-14 | 70.1 |
| Msa0031100 | MtrunA17_Chr7g0243891 | 73.171 | 41 | 11 | 0 | 106 | 146 | 393 | 433 | 2.50e-14 | 69.3 |
| Msa0031100 | MtrunA17_Chr3g0106491 | 55.932 | 59 | 24 | 1 | 92 | 148 | 368 | 426 | 2.89e-14 | 69.3 |
| Msa0031100 | MtrunA17_Chr5g0432161 | 56.140 | 57 | 23 | 1 | 92 | 146 | 424 | 480 | 5.55e-13 | 65.5 |
| Msa0031100 | MtrunA17_Chr4g0051881 | 51.667 | 60 | 27 | 1 | 92 | 149 | 181 | 240 | 1.06e-12 | 64.3 |
| Msa0031100 | MtrunA17_Chr4g0004911 | 56.140 | 57 | 23 | 1 | 92 | 146 | 339 | 395 | 2.26e-12 | 63.9 |
| Msa0031100 | MtrunA17_Chr7g0249311 | 52.632 | 57 | 25 | 1 | 92 | 146 | 395 | 451 | 3.09e-12 | 63.5 |
| Msa0031100 | MtrunA17_Chr7g0249301 | 51.724 | 58 | 26 | 1 | 92 | 147 | 295 | 352 | 3.27e-11 | 60.5 |
| Msa0031100 | MtrunA17_Chr1g0194481 | 43.284 | 67 | 34 | 2 | 92 | 156 | 161 | 225 | 4.53e-11 | 59.7 |
| Msa0031100 | MtrunA17_Chr7g0263531 | 57.500 | 40 | 17 | 0 | 107 | 146 | 381 | 420 | 9.12e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031100 | AT4G27745.2 | 67.010 | 97 | 32 | 0 | 8 | 104 | 5 | 101 | 8.28e-44 | 140 |
| Msa0031100 | AT4G27745.3 | 67.010 | 97 | 32 | 0 | 8 | 104 | 5 | 101 | 8.28e-44 | 140 |
| Msa0031100 | AT4G27745.1 | 67.010 | 97 | 32 | 0 | 8 | 104 | 5 | 101 | 8.28e-44 | 140 |
| Msa0031100 | AT4G27745.4 | 67.010 | 97 | 32 | 0 | 8 | 104 | 5 | 101 | 8.28e-44 | 140 |
| Msa0031100 | AT3G08990.2 | 46.392 | 97 | 52 | 0 | 8 | 104 | 9 | 105 | 9.49e-30 | 105 |
| Msa0031100 | AT3G08990.1 | 46.392 | 97 | 52 | 0 | 8 | 104 | 9 | 105 | 9.49e-30 | 105 |
| Msa0031100 | AT3G08990.3 | 46.392 | 97 | 52 | 0 | 8 | 104 | 9 | 105 | 9.49e-30 | 105 |
| Msa0031100 | AT2G40110.1 | 45.361 | 97 | 53 | 0 | 8 | 104 | 9 | 105 | 1.18e-29 | 105 |
| Msa0031100 | AT3G11230.1 | 48.454 | 97 | 50 | 0 | 8 | 104 | 9 | 105 | 1.64e-29 | 105 |
| Msa0031100 | AT3G55890.4 | 47.423 | 97 | 51 | 0 | 8 | 104 | 9 | 105 | 5.61e-29 | 103 |
| Msa0031100 | AT3G55890.1 | 47.423 | 97 | 51 | 0 | 8 | 104 | 9 | 105 | 5.61e-29 | 103 |
| Msa0031100 | AT3G11230.4 | 49.462 | 93 | 47 | 0 | 8 | 100 | 9 | 101 | 8.09e-29 | 102 |
| Msa0031100 | AT3G11230.2 | 48.454 | 97 | 50 | 0 | 8 | 104 | 42 | 138 | 8.54e-29 | 104 |
| Msa0031100 | AT3G55890.3 | 47.312 | 93 | 49 | 0 | 8 | 100 | 9 | 101 | 2.07e-28 | 101 |
| Msa0031100 | AT3G55890.2 | 47.312 | 93 | 49 | 0 | 8 | 100 | 9 | 101 | 2.07e-28 | 101 |
| Msa0031100 | AT2G40110.2 | 45.161 | 93 | 51 | 0 | 8 | 100 | 9 | 101 | 3.34e-28 | 101 |
| Msa0031100 | AT3G11230.3 | 51.136 | 88 | 43 | 0 | 13 | 100 | 47 | 134 | 4.43e-28 | 102 |
| Msa0031100 | AT5G53940.1 | 43.299 | 97 | 55 | 0 | 8 | 104 | 9 | 105 | 7.73e-28 | 100 |
| Msa0031100 | AT4G27740.1 | 50.526 | 95 | 47 | 0 | 13 | 107 | 10 | 104 | 2.38e-26 | 96.3 |
| Msa0031100 | AT2G40110.4 | 42.667 | 75 | 43 | 0 | 8 | 82 | 9 | 83 | 1.18e-21 | 84.0 |
| Msa0031100 | AT2G40110.3 | 42.667 | 75 | 43 | 0 | 8 | 82 | 9 | 83 | 1.18e-21 | 84.0 |
| Msa0031100 | AT1G13960.1 | 59.649 | 57 | 21 | 1 | 92 | 146 | 412 | 468 | 4.05e-16 | 75.1 |
| Msa0031100 | AT1G13960.2 | 75.000 | 40 | 10 | 0 | 107 | 146 | 276 | 315 | 7.84e-16 | 73.9 |
| Msa0031100 | AT2G03340.1 | 59.649 | 57 | 21 | 1 | 92 | 146 | 418 | 474 | 1.91e-15 | 73.2 |
| Msa0031100 | AT5G56270.1 | 59.649 | 57 | 21 | 1 | 92 | 146 | 490 | 546 | 3.19e-15 | 72.4 |
| Msa0031100 | AT3G01080.2 | 59.649 | 57 | 21 | 1 | 92 | 146 | 347 | 403 | 1.10e-14 | 70.9 |
| Msa0031100 | AT3G01080.1 | 59.649 | 57 | 21 | 1 | 92 | 146 | 309 | 365 | 1.65e-14 | 70.1 |
| Msa0031100 | AT4G26640.7 | 58.621 | 58 | 22 | 1 | 92 | 147 | 344 | 401 | 3.00e-14 | 69.7 |
| Msa0031100 | AT4G26640.2 | 58.621 | 58 | 22 | 1 | 92 | 147 | 384 | 441 | 3.06e-14 | 69.7 |
| Msa0031100 | AT5G07100.2 | 55.932 | 59 | 24 | 1 | 92 | 148 | 144 | 202 | 3.58e-14 | 67.8 |
| Msa0031100 | AT5G07100.4 | 55.932 | 59 | 24 | 1 | 92 | 148 | 144 | 202 | 3.58e-14 | 67.8 |
| Msa0031100 | AT5G07100.5 | 55.932 | 59 | 24 | 1 | 92 | 148 | 144 | 202 | 3.58e-14 | 67.8 |
| Msa0031100 | AT5G07100.3 | 55.932 | 59 | 24 | 1 | 92 | 148 | 144 | 202 | 3.58e-14 | 67.8 |
| Msa0031100 | AT4G26640.5 | 58.621 | 58 | 22 | 1 | 92 | 147 | 208 | 265 | 4.71e-14 | 68.9 |
| Msa0031100 | AT4G26640.6 | 58.621 | 58 | 22 | 1 | 92 | 147 | 208 | 265 | 4.71e-14 | 68.9 |
| Msa0031100 | AT4G26640.4 | 58.621 | 58 | 22 | 1 | 92 | 147 | 208 | 265 | 4.71e-14 | 68.9 |
| Msa0031100 | AT4G26640.3 | 58.621 | 58 | 22 | 1 | 92 | 147 | 208 | 265 | 4.71e-14 | 68.9 |
| Msa0031100 | AT4G26640.1 | 58.621 | 58 | 22 | 1 | 92 | 147 | 312 | 369 | 4.73e-14 | 68.9 |
| Msa0031100 | AT5G07100.1 | 55.932 | 59 | 24 | 1 | 92 | 148 | 237 | 295 | 4.90e-14 | 68.6 |
| Msa0031100 | AT2G30250.1 | 36.538 | 104 | 49 | 4 | 46 | 149 | 304 | 390 | 3.31e-13 | 66.6 |
| Msa0031100 | AT2G38470.1 | 57.895 | 57 | 22 | 1 | 92 | 146 | 365 | 421 | 3.77e-13 | 66.6 |
| Msa0031100 | AT1G29860.1 | 55.814 | 43 | 19 | 0 | 107 | 149 | 156 | 198 | 1.84e-11 | 61.2 |
| Msa0031100 | AT4G18170.1 | 60.976 | 41 | 16 | 0 | 107 | 147 | 192 | 232 | 2.07e-11 | 61.2 |
| Msa0031100 | AT2G04880.2 | 57.500 | 40 | 17 | 0 | 107 | 146 | 303 | 342 | 6.73e-11 | 60.1 |
| Msa0031100 | AT3G62340.1 | 44.444 | 72 | 36 | 2 | 92 | 161 | 121 | 190 | 7.14e-11 | 59.3 |
| Msa0031100 | AT2G04880.1 | 57.500 | 40 | 17 | 0 | 107 | 146 | 327 | 366 | 7.22e-11 | 59.7 |
| Msa0031100 | AT5G46350.1 | 58.537 | 41 | 17 | 0 | 107 | 147 | 203 | 243 | 9.71e-11 | 59.3 |
Find 29 sgRNAs with CRISPR-Local
Find 512 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTTCGAAATTCTTTC+AGG | 0.207553 | 1_1:-57674202 | Msa0031100:intron |
| TATTAATTAAATAGGAATTA+AGG | 0.249179 | 1_1:-57674494 | Msa0031100:intron |
| TACATTGTTATGACATCTTT+AGG | 0.283273 | 1_1:+57668405 | None:intergenic |
| ATTAAAGCAAGTGTACAATA+TGG | 0.319039 | 1_1:+57674254 | None:intergenic |
| GTATTTCTGAGTTTCCTCAT+AGG | 0.391527 | 1_1:+57672883 | None:intergenic |
| ATTGTTGAGGAGCCTAGTTT+TGG | 0.427887 | 1_1:-57668348 | Msa0031100:CDS |
| AAACTAGGCTCCTCAACAAT+TGG | 0.452424 | 1_1:+57668351 | None:intergenic |
| GAAAGTGTGTAGAGAGAGCT+TGG | 0.483812 | 1_1:-57668434 | Msa0031100:CDS |
| TAATAATTTCAGGCAAGAAA+AGG | 0.487527 | 1_1:-57673046 | Msa0031100:intron |
| AATGCAATGAATGTTAAAGT+AGG | 0.487681 | 1_1:-57673004 | Msa0031100:CDS |
| TCCCTAAACACTTTAATGCC+TGG | 0.496757 | 1_1:-57676381 | None:intergenic |
| TTAAAGCAAGTGTACAATAT+GGG | 0.497342 | 1_1:+57674255 | None:intergenic |
| TGTGAGTGCAATGAAGTGCT+TGG | 0.525354 | 1_1:-57672923 | Msa0031100:CDS |
| GGAACGCAAATACTTTATTG+AGG | 0.526341 | 1_1:-57672858 | Msa0031100:CDS |
| ATGCAATGAATGTTAAAGTA+GGG | 0.529776 | 1_1:-57673003 | Msa0031100:CDS |
| GGCTCCTCAACAATTGGTGT+TGG | 0.561373 | 1_1:+57668357 | None:intergenic |
| CAAGTATGAAAGAGCCTATG+AGG | 0.563125 | 1_1:-57672897 | Msa0031100:CDS |
| GAGGACAGGCAACTCATGAC+AGG | 0.571971 | 1_1:-57672974 | Msa0031100:CDS |
| CACTTTCGAATGCTACAACC+CGG | 0.587736 | 1_1:+57668450 | None:intergenic |
| CGAAATCAAATCATCATGAG+TGG | 0.593992 | 1_1:+57674215 | None:intergenic |
| TTGCAGAAATACAGAGATCA+CGG | 0.600046 | 1_1:-57669962 | Msa0031100:intron |
| AAAGTGTGTAGAGAGAGCTT+GGG | 0.618577 | 1_1:-57668433 | Msa0031100:CDS |
| TCGCCACCATTACCAAAACT+AGG | 0.624343 | 1_1:+57668336 | None:intergenic |
| GTGTGTAGAGAGAGCTTGGG+CGG | 0.626402 | 1_1:-57668430 | Msa0031100:CDS |
| CTATTACAAATGTACGACAC+CGG | 0.628849 | 1_1:-57668469 | Msa0031100:CDS |
| TGAGGAAACTCAGAAATACA+AGG | 0.630143 | 1_1:-57672879 | Msa0031100:CDS |
| CGTGCCAACACCAATTGTTG+AGG | 0.644202 | 1_1:-57668361 | Msa0031100:CDS |
| TATTACAAATGTACGACACC+GGG | 0.651075 | 1_1:-57668468 | Msa0031100:CDS |
| GATGTCATAACAATGTACGA+AGG | 0.684441 | 1_1:-57668399 | Msa0031100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGTTAATTACAATAA+AGG | + | chr1_1:57668586-57668605 | None:intergenic | 10.0% |
| !! | TTTATTGTAATTAACAAAAT+AGG | - | chr1_1:57668585-57668604 | Msa0031100:intron | 10.0% |
| !! | TTAATTAAGAAAAAATAATG+AGG | + | chr1_1:57670037-57670056 | None:intergenic | 10.0% |
| !! | TATTAATTAAATAGGAATTA+AGG | - | chr1_1:57670198-57670217 | Msa0031100:intron | 10.0% |
| !! | AACTTATTATGAATTTATTA+TGG | - | chr1_1:57671964-57671983 | Msa0031100:intron | 10.0% |
| !!! | TTAATTAATTCATAAACTTT+TGG | - | chr1_1:57673045-57673064 | Msa0031100:intron | 10.0% |
| !!! | AAAGATTTTATTAAAAAAAG+GGG | - | chr1_1:57673385-57673404 | Msa0031100:intron | 10.0% |
| !! | AGAAAAAATTGTTAATAATA+TGG | - | chr1_1:57674036-57674055 | Msa0031100:intron | 10.0% |
| !!! | TTTTACTATTATTAGTTTAT+AGG | + | chr1_1:57674089-57674108 | None:intergenic | 10.0% |
| !! | TAACAACATTTATTATTATT+AGG | + | chr1_1:57674132-57674151 | None:intergenic | 10.0% |
| !!! | TGAGATTTTAAATTAATATA+AGG | - | chr1_1:57674164-57674183 | Msa0031100:intron | 10.0% |
| !!! | AATTAATATAAGGATAATTT+TGG | - | chr1_1:57674174-57674193 | Msa0031100:intron | 10.0% |
| !!! | TAATGTTTTTTTCATTTCTA+TGG | + | chr1_1:57668359-57668378 | None:intergenic | 15.0% |
| !!! | AAATTTTGTTCCTAATTAAA+TGG | + | chr1_1:57668449-57668468 | None:intergenic | 15.0% |
| !! | AAGGAGATTAAATTTAAAAA+AGG | + | chr1_1:57668542-57668561 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTCCTTTTCTTTT+TGG | + | chr1_1:57669984-57670003 | None:intergenic | 15.0% |
| !!! | TTATTTAATTTGGTCTATTA+TGG | + | chr1_1:57670559-57670578 | None:intergenic | 15.0% |
| !!! | TCTTTGGATTTTTTTTTTTA+AGG | - | chr1_1:57670628-57670647 | Msa0031100:intron | 15.0% |
| !!! | TTGAATTTTTTTGATATGTT+GGG | - | chr1_1:57670670-57670689 | Msa0031100:intron | 15.0% |
| !! | ATTTCCAAATATGAAATAAA+AGG | - | chr1_1:57671037-57671056 | Msa0031100:intron | 15.0% |
| !! | CTAAGTTTATTAATAATTTC+AGG | - | chr1_1:57671636-57671655 | Msa0031100:intron | 15.0% |
| !!! | AATATTTTCACAAATTAAAC+AGG | + | chr1_1:57672534-57672553 | None:intergenic | 15.0% |
| !! | ATTAAAAACATTAATTGATG+TGG | - | chr1_1:57672860-57672879 | Msa0031100:CDS | 15.0% |
| !! | TATTATGATAAAGAGTTTAA+TGG | + | chr1_1:57672945-57672964 | None:intergenic | 15.0% |
| !!! | TCTTATGTGATAAATATTTT+AGG | + | chr1_1:57673199-57673218 | None:intergenic | 15.0% |
| !! | TAAAGATATGTAACATAATT+AGG | - | chr1_1:57673221-57673240 | Msa0031100:intron | 15.0% |
| !! | AAAGATATGTAACATAATTA+GGG | - | chr1_1:57673222-57673241 | Msa0031100:intron | 15.0% |
| !!! | TAGCATACTTAATATTTTTT+AGG | - | chr1_1:57673267-57673286 | Msa0031100:intron | 15.0% |
| !!! | AATAAAATCTTTTTTGAGTT+TGG | + | chr1_1:57673377-57673396 | None:intergenic | 15.0% |
| !!! | AAGATTTTATTAAAAAAAGG+GGG | - | chr1_1:57673386-57673405 | Msa0031100:intron | 15.0% |
| !! | CTAAATTTAACAAAACATTT+AGG | - | chr1_1:57673485-57673504 | Msa0031100:intron | 15.0% |
| !!! | ATTTTAATTAAAAGTGTGTT+TGG | - | chr1_1:57673830-57673849 | Msa0031100:intron | 15.0% |
| !! | CTCTTAAACTTAATTAAATA+AGG | - | chr1_1:57673898-57673917 | Msa0031100:intron | 15.0% |
| !! | TAATAATAAATGTTGTTACA+AGG | - | chr1_1:57674134-57674153 | Msa0031100:intron | 15.0% |
| !! | ATGACAATTCAAATATATAA+AGG | - | chr1_1:57674511-57674530 | Msa0031100:intron | 15.0% |
| !! | TGACAATTCAAATATATAAA+GGG | - | chr1_1:57674512-57674531 | Msa0031100:intron | 15.0% |
| !!! | GAATAATTGAATTCATTTTT+TGG | + | chr1_1:57674988-57675007 | None:intergenic | 15.0% |
| !! | AATTATTCACATTTATTAGT+AGG | - | chr1_1:57675000-57675019 | Msa0031100:intron | 15.0% |
| !!! | TTTTATACTTTGTCAAAATT+TGG | - | chr1_1:57675242-57675261 | Msa0031100:intron | 15.0% |
| !! | TTTATACTTTGTCAAAATTT+GGG | - | chr1_1:57675243-57675262 | Msa0031100:intron | 15.0% |
| !!! | ATTCCATGTATTATTTTTTT+TGG | - | chr1_1:57675271-57675290 | Msa0031100:intron | 15.0% |
| !!! | TTCCATGTATTATTTTTTTT+GGG | - | chr1_1:57675272-57675291 | Msa0031100:intron | 15.0% |
| !! | ATATCAACTTAATTATGAAT+GGG | - | chr1_1:57675527-57675546 | Msa0031100:intron | 15.0% |
| !! | TTATAAGTAAATATGTAGTT+TGG | - | chr1_1:57675624-57675643 | Msa0031100:intron | 15.0% |
| !! | AACAAATAATACATGAAATT+CGG | + | chr1_1:57676121-57676140 | None:intergenic | 15.0% |
| !!! | AATTGTTTTCTTCTAAAAAA+AGG | - | chr1_1:57676157-57676176 | Msa0031100:intron | 15.0% |
| !! | ATTGTAATTAACAAAATAGG+TGG | - | chr1_1:57668588-57668607 | Msa0031100:intron | 20.0% |
| !! | ATGGAAATCAATAGAAAAAA+GGG | + | chr1_1:57668800-57668819 | None:intergenic | 20.0% |
| !! | TATGGAAATCAATAGAAAAA+AGG | + | chr1_1:57668801-57668820 | None:intergenic | 20.0% |
| !!! | TTCCATAAAGATCAATTTTT+TGG | - | chr1_1:57668814-57668833 | Msa0031100:intron | 20.0% |
| !!! | AGTTAATTCTTTGTTTCTAT+TGG | - | chr1_1:57668847-57668866 | Msa0031100:intron | 20.0% |
| !! | TATAATAGATATTGAGAACA+TGG | + | chr1_1:57668942-57668961 | None:intergenic | 20.0% |
| !! | TATTGTACAACAATTATTAC+AGG | + | chr1_1:57669088-57669107 | None:intergenic | 20.0% |
| !! | ATTGTTGTACAATACTTTAT+TGG | - | chr1_1:57669094-57669113 | Msa0031100:intron | 20.0% |
| !!! | AAAATGTGGTTTTTATTCTT+AGG | - | chr1_1:57669135-57669154 | Msa0031100:intron | 20.0% |
| !!! | AAATGTGGTTTTTATTCTTA+GGG | - | chr1_1:57669136-57669155 | Msa0031100:intron | 20.0% |
| !! | AGAGGTTAATATAAATTCAT+AGG | - | chr1_1:57669611-57669630 | Msa0031100:intron | 20.0% |
| !!! | TGTATATTTAATTTGTTGTG+TGG | - | chr1_1:57669812-57669831 | Msa0031100:intron | 20.0% |
| !! | ATATATATACAAACGCATAA+AGG | + | chr1_1:57669838-57669857 | None:intergenic | 20.0% |
| !! | TTTATTCTAAGTCCAAAATT+CGG | - | chr1_1:57669885-57669904 | Msa0031100:intron | 20.0% |
| !!! | AATAGCTTGTAAGTTATAAT+TGG | - | chr1_1:57670011-57670030 | Msa0031100:intron | 20.0% |
| !! | TATCATATGATTACTAGATT+TGG | - | chr1_1:57670590-57670609 | Msa0031100:intron | 20.0% |
| !!! | TTGGATTTTTTTTTTTAAGG+AGG | - | chr1_1:57670631-57670650 | Msa0031100:intron | 20.0% |
| !!! | GTTGAATTTTTTTGATATGT+TGG | - | chr1_1:57670669-57670688 | Msa0031100:intron | 20.0% |
| !!! | TGAATTTTTTTGATATGTTG+GGG | - | chr1_1:57670671-57670690 | Msa0031100:intron | 20.0% |
| !!! | CAGACTAATTTTTATAAGTT+TGG | - | chr1_1:57670876-57670895 | Msa0031100:intron | 20.0% |
| !!! | AAATCAATACATCTTTTTAG+TGG | - | chr1_1:57671106-57671125 | Msa0031100:intron | 20.0% |
| !!! | TTCAAAATTCACTCTTTTAT+TGG | + | chr1_1:57671269-57671288 | None:intergenic | 20.0% |
| !!! | CAAACACTTTATTTATAAGA+AGG | + | chr1_1:57672375-57672394 | None:intergenic | 20.0% |
| !!! | CTTCTTATAAATAAAGTGTT+TGG | - | chr1_1:57672373-57672392 | Msa0031100:intron | 20.0% |
| !! | GACTTTAATGTCATATATAT+TGG | - | chr1_1:57672478-57672497 | Msa0031100:intron | 20.0% |
| !!! | TCATATATATTGGAGAATTT+TGG | - | chr1_1:57672488-57672507 | Msa0031100:intron | 20.0% |
| !!! | AATTTAATTTTCTCTCTTCA+CGG | + | chr1_1:57673169-57673188 | None:intergenic | 20.0% |
| !! | AAGATATGTAACATAATTAG+GGG | - | chr1_1:57673223-57673242 | Msa0031100:intron | 20.0% |
| !!! | TAATATTTTTTAGGTAAGTG+AGG | - | chr1_1:57673276-57673295 | Msa0031100:intron | 20.0% |
| !! | TTTGTTAAATTTAGTGATGA+GGG | + | chr1_1:57673479-57673498 | None:intergenic | 20.0% |
| !!! | TTTTGTTAAATTTAGTGATG+AGG | + | chr1_1:57673480-57673499 | None:intergenic | 20.0% |
| !!! | TTTGTTCAATTTTTAGAAAG+GGG | + | chr1_1:57674229-57674248 | None:intergenic | 20.0% |
| !!! | GTTTGTTCAATTTTTAGAAA+GGG | + | chr1_1:57674230-57674249 | None:intergenic | 20.0% |
| !!! | TGTTTGTTCAATTTTTAGAA+AGG | + | chr1_1:57674231-57674250 | None:intergenic | 20.0% |
| !! | CACTACTAAAAAAAAGTAAT+TGG | + | chr1_1:57674387-57674406 | None:intergenic | 20.0% |
| !!! | TATATTTGAATTGTCATTTG+AGG | + | chr1_1:57674508-57674527 | None:intergenic | 20.0% |
| !! | ATTCAAATATATAAAGGGAA+TGG | - | chr1_1:57674517-57674536 | Msa0031100:intron | 20.0% |
| !! | TGTAAACACAAATATGTTTA+TGG | - | chr1_1:57674663-57674682 | Msa0031100:intron | 20.0% |
| !!! | GTTGTTATTATGATATTTCT+AGG | + | chr1_1:57674797-57674816 | None:intergenic | 20.0% |
| !! | TAGATAAAATTAAAGTGTGA+AGG | + | chr1_1:57674915-57674934 | None:intergenic | 20.0% |
| !! | CCATATAGTTTATTAATAAG+CGG | - | chr1_1:57675071-57675090 | Msa0031100:intron | 20.0% |
| !!! | TTTTACATATGTTCAACTTA+AGG | + | chr1_1:57675209-57675228 | None:intergenic | 20.0% |
| !!! | TTAAGTTGAACATATGTAAA+AGG | - | chr1_1:57675208-57675227 | Msa0031100:intron | 20.0% |
| !!! | ATAATTAAGTTGATATGGTA+CGG | + | chr1_1:57675523-57675542 | None:intergenic | 20.0% |
| !!! | CATTCATAATTAAGTTGATA+TGG | + | chr1_1:57675528-57675547 | None:intergenic | 20.0% |
| !! | CATATCAACTTAATTATGAA+TGG | - | chr1_1:57675526-57675545 | Msa0031100:intron | 20.0% |
| !! | TTGTAAATGAAATTAGAGTT+AGG | - | chr1_1:57675659-57675678 | Msa0031100:intron | 20.0% |
| !!! | ATATGTAATCAAGTTTTCTT+GGG | + | chr1_1:57675702-57675721 | None:intergenic | 20.0% |
| !! | TTACATGAACTTATCATTTA+CGG | + | chr1_1:57676030-57676049 | None:intergenic | 20.0% |
| !! | ACAAATAATACATGAAATTC+GGG | + | chr1_1:57676120-57676139 | None:intergenic | 20.0% |
| ! | ACATATGTTGGAAAGTAATT+AGG | - | chr1_1:57668414-57668433 | Msa0031100:CDS | 25.0% |
| ! | GATCACAATTCCATTTAATT+AGG | - | chr1_1:57668436-57668455 | Msa0031100:CDS | 25.0% |
| ! | TGGAAATCAATAGAAAAAAG+GGG | + | chr1_1:57668799-57668818 | None:intergenic | 25.0% |
| ! | CACCAAAAAATTGATCTTTA+TGG | + | chr1_1:57668819-57668838 | None:intergenic | 25.0% |
| ! | TGTTTCTTTGTGCTTATATT+TGG | - | chr1_1:57668975-57668994 | Msa0031100:intron | 25.0% |
| !! | GATTTCTATGCATCATATTT+TGG | - | chr1_1:57669012-57669031 | Msa0031100:intron | 25.0% |
| ! | GTGACTCAAAATACAAATTA+AGG | + | chr1_1:57669233-57669252 | None:intergenic | 25.0% |
| !! | AGCAATATTCTTTGCAATTT+TGG | - | chr1_1:57669325-57669344 | Msa0031100:intron | 25.0% |
| !! | GCAATATTCTTTGCAATTTT+GGG | - | chr1_1:57669326-57669345 | Msa0031100:intron | 25.0% |
| ! | AACTTGTAGAAAGGAAAAAA+TGG | + | chr1_1:57669364-57669383 | None:intergenic | 25.0% |
| ! | ATCATTCAAAACTTGTAGAA+AGG | + | chr1_1:57669373-57669392 | None:intergenic | 25.0% |
| !!! | ATTTTATAGTTGGTCTATGT+TGG | - | chr1_1:57669454-57669473 | Msa0031100:intron | 25.0% |
| ! | CAATATATTTAGTGTAAGTC+TGG | + | chr1_1:57669495-57669514 | None:intergenic | 25.0% |
| ! | TTAATAGTTAGTTAGTAGAC+AGG | - | chr1_1:57669528-57669547 | Msa0031100:intron | 25.0% |
| ! | TAATAGTTAGTTAGTAGACA+GGG | - | chr1_1:57669529-57669548 | Msa0031100:intron | 25.0% |
| ! | ACATAAAGTTGTCTATTATG+AGG | - | chr1_1:57669860-57669879 | Msa0031100:intron | 25.0% |
| ! | TTATTCTAAGTCCAAAATTC+GGG | - | chr1_1:57669886-57669905 | Msa0031100:intron | 25.0% |
| ! | CTGTTAGTAGATTCAAATTT+GGG | - | chr1_1:57669952-57669971 | Msa0031100:intron | 25.0% |
| ! | AGATGAATAGAAAGATGATT+TGG | + | chr1_1:57670069-57670088 | None:intergenic | 25.0% |
| ! | AAATCATCTTTCTATTCATC+TGG | - | chr1_1:57670068-57670087 | Msa0031100:intron | 25.0% |
| !!! | TTCTCACTTTTCTATTTTTG+TGG | - | chr1_1:57670099-57670118 | Msa0031100:intron | 25.0% |
| !! | AAGATTTACTCTTTTAAACG+TGG | + | chr1_1:57670286-57670305 | None:intergenic | 25.0% |
| ! | TTAAAGCAAGTGTACAATAT+GGG | + | chr1_1:57670440-57670459 | None:intergenic | 25.0% |
| ! | ATTAAAGCAAGTGTACAATA+TGG | + | chr1_1:57670441-57670460 | None:intergenic | 25.0% |
| !! | TTTGATTTCGAAATTCTTTC+AGG | - | chr1_1:57670490-57670509 | Msa0031100:intron | 25.0% |
| ! | TAATTTGGTCTATTATGGAA+GGG | + | chr1_1:57670554-57670573 | None:intergenic | 25.0% |
| !! | TTAATTTGGTCTATTATGGA+AGG | + | chr1_1:57670555-57670574 | None:intergenic | 25.0% |
| !! | ATGGCTTGTAACATTAAATT+AGG | - | chr1_1:57670917-57670936 | Msa0031100:intron | 25.0% |
| !!! | CAGTCCTTTTATTTCATATT+TGG | + | chr1_1:57671044-57671063 | None:intergenic | 25.0% |
| !! | AGCAGTGTTATAATTCATTT+TGG | - | chr1_1:57671165-57671184 | Msa0031100:intron | 25.0% |
| ! | ATGTCTCACATTTAAGAAAT+AGG | - | chr1_1:57671205-57671224 | Msa0031100:intron | 25.0% |
| ! | AAGTAAATTAAGTGTGTGTT+AGG | + | chr1_1:57671345-57671364 | None:intergenic | 25.0% |
| !! | ATAAGATCTTAGTGGATATT+TGG | + | chr1_1:57671566-57671585 | None:intergenic | 25.0% |
| ! | TCAAATACATAAGATCTTAG+TGG | + | chr1_1:57671574-57671593 | None:intergenic | 25.0% |
| ! | TAATAATTTCAGGCAAGAAA+AGG | - | chr1_1:57671646-57671665 | Msa0031100:intron | 25.0% |
| ! | AATGCAATGAATGTTAAAGT+AGG | - | chr1_1:57671688-57671707 | Msa0031100:intron | 25.0% |
| ! | ATGCAATGAATGTTAAAGTA+GGG | - | chr1_1:57671689-57671708 | Msa0031100:intron | 25.0% |
| ! | TGTTTGATATTTGTAGTGTT+TGG | - | chr1_1:57671911-57671930 | Msa0031100:intron | 25.0% |
| ! | TTGAACAAATTTCCTGAATT+CGG | + | chr1_1:57672001-57672020 | None:intergenic | 25.0% |
| ! | CAAAATCAAACCTTTGTAAA+TGG | + | chr1_1:57672048-57672067 | None:intergenic | 25.0% |
| !! | ATTTTTCTGATTATGCCAAA+TGG | - | chr1_1:57672257-57672276 | Msa0031100:intron | 25.0% |
| ! | GTATATATGAGATCCAATAA+TGG | + | chr1_1:57672449-57672468 | None:intergenic | 25.0% |
| ! | TTATGTAACATAGAGTTTAC+TGG | - | chr1_1:57672770-57672789 | Msa0031100:intron | 25.0% |
| ! | GACAATTCTAAATGTTTGAT+TGG | + | chr1_1:57672834-57672853 | None:intergenic | 25.0% |
| ! | TATGATAAAGAGTTTAATGG+TGG | + | chr1_1:57672942-57672961 | None:intergenic | 25.0% |
| !!! | ATTTAATTTTCTCTCTTCAC+GGG | + | chr1_1:57673168-57673187 | None:intergenic | 25.0% |
| !!! | AAAATCTTTTTTGAGTTTGG+CGG | + | chr1_1:57673374-57673393 | None:intergenic | 25.0% |
| ! | TTGTTAAATTTAGTGATGAG+GGG | + | chr1_1:57673478-57673497 | None:intergenic | 25.0% |
| !! | TTTGATGGATGGAAAATATA+GGG | - | chr1_1:57673546-57673565 | Msa0031100:intron | 25.0% |
| !! | GTAACAACTTTTATTACTAC+TGG | + | chr1_1:57674015-57674034 | None:intergenic | 25.0% |
| ! | AATTGGTGAGAGAAATTTAT+AGG | + | chr1_1:57674370-57674389 | None:intergenic | 25.0% |
| ! | AAACACAAATATGTTTATGG+TGG | - | chr1_1:57674666-57674685 | Msa0031100:intron | 25.0% |
| ! | ATCAAATAGCTTCTTCATAT+AGG | - | chr1_1:57674759-57674778 | Msa0031100:intron | 25.0% |
| ! | TCAAATAGCTTCTTCATATA+GGG | - | chr1_1:57674760-57674779 | Msa0031100:intron | 25.0% |
| ! | GGATATAATTGGAGAAAATA+CGG | - | chr1_1:57674842-57674861 | Msa0031100:intron | 25.0% |
| ! | GATATAATTGGAGAAAATAC+GGG | - | chr1_1:57674843-57674862 | Msa0031100:intron | 25.0% |
| ! | TGAATTATCCATGAATGTTA+TGG | - | chr1_1:57674936-57674955 | Msa0031100:intron | 25.0% |
| ! | AAAGATAACCATAACATTCA+TGG | + | chr1_1:57674947-57674966 | None:intergenic | 25.0% |
| ! | CCGCTTATTAATAAACTATA+TGG | + | chr1_1:57675074-57675093 | None:intergenic | 25.0% |
| ! | AATCCAAGAATTATACTGTA+GGG | + | chr1_1:57675138-57675157 | None:intergenic | 25.0% |
| ! | TAATCCAAGAATTATACTGT+AGG | + | chr1_1:57675139-57675158 | None:intergenic | 25.0% |
| ! | TTAAGGTTACAAATTACTAC+TGG | + | chr1_1:57675192-57675211 | None:intergenic | 25.0% |
| ! | CACCCAAAAAAAATAATACA+TGG | + | chr1_1:57675277-57675296 | None:intergenic | 25.0% |
| !!! | TAATTAAGTTGATATGGTAC+GGG | + | chr1_1:57675522-57675541 | None:intergenic | 25.0% |
| !! | AACTTAATTATGAATGGGTT+GGG | - | chr1_1:57675532-57675551 | Msa0031100:intron | 25.0% |
| !! | CATATGTAATCAAGTTTTCT+TGG | + | chr1_1:57675703-57675722 | None:intergenic | 25.0% |
| ! | ATTGAGCTCAGATTAAAAAT+AGG | - | chr1_1:57675837-57675856 | Msa0031100:intron | 25.0% |
| ! | GTCCAACCAAAAAATAATAT+GGG | - | chr1_1:57675929-57675948 | Msa0031100:intron | 25.0% |
| !!! | AACTTGCCCATATTATTTTT+TGG | + | chr1_1:57675938-57675957 | None:intergenic | 25.0% |
| ! | AAAAAATAATATGGGCAAGT+TGG | - | chr1_1:57675937-57675956 | Msa0031100:intron | 25.0% |
| ! | TACATGAACTTATCATTTAC+GGG | + | chr1_1:57676029-57676048 | None:intergenic | 25.0% |
| ! | GTTCATGTAATTAGTGAATT+TGG | - | chr1_1:57676040-57676059 | Msa0031100:intron | 25.0% |
| ! | CAAATAATACATGAAATTCG+GGG | + | chr1_1:57676119-57676138 | None:intergenic | 25.0% |
| ! | TACATTGTTATGACATCTTT+AGG | + | chr1_1:57676290-57676309 | None:intergenic | 25.0% |
| TTCCATGTTACATATTTACC+AGG | + | chr1_1:57668332-57668351 | None:intergenic | 30.0% | |
| TTGTCCTTCATAACATATGT+TGG | - | chr1_1:57668402-57668421 | Msa0031100:CDS | 30.0% | |
| CTTTCCAACATATGTTATGA+AGG | + | chr1_1:57668409-57668428 | None:intergenic | 30.0% | |
| ACGTCATATTGAAGAAAATG+CGG | - | chr1_1:57668476-57668495 | Msa0031100:intron | 30.0% | |
| ACTAATGAAAGATTTAGGCA+AGG | + | chr1_1:57668561-57668580 | None:intergenic | 30.0% | |
| AGGACACTAATGAAAGATTT+AGG | + | chr1_1:57668566-57668585 | None:intergenic | 30.0% | |
| TATCCATTGAAACTGAAATG+AGG | + | chr1_1:57668759-57668778 | None:intergenic | 30.0% | |
| ! | GTGCTTATATTTGGCTATTT+TGG | - | chr1_1:57668984-57669003 | Msa0031100:intron | 30.0% |
| TCCAATTTCCAATTAGTAAC+AGG | - | chr1_1:57669052-57669071 | Msa0031100:intron | 30.0% | |
| CAATTATTACAGGAAAACAG+TGG | + | chr1_1:57669078-57669097 | None:intergenic | 30.0% | |
| TTTATTGGTAAATGCCAACT+AGG | - | chr1_1:57669109-57669128 | Msa0031100:intron | 30.0% | |
| TTATTGGTAAATGCCAACTA+GGG | - | chr1_1:57669110-57669129 | Msa0031100:intron | 30.0% | |
| ! | GTTTGTTGCAATAAAGAGAA+AGG | + | chr1_1:57669278-57669297 | None:intergenic | 30.0% |
| ! | CAACCTTCTGATTTTATAGT+TGG | - | chr1_1:57669444-57669463 | Msa0031100:intron | 30.0% |
| AGACCAACTATAAAATCAGA+AGG | + | chr1_1:57669450-57669469 | None:intergenic | 30.0% | |
| CTCATATTATAGTTCGCTTT+AGG | + | chr1_1:57669576-57669595 | None:intergenic | 30.0% | |
| !!! | GAGACTTTTTTTAATGAGAG+AGG | - | chr1_1:57669593-57669612 | Msa0031100:intron | 30.0% |
| TATTCTAAGTCCAAAATTCG+GGG | - | chr1_1:57669887-57669906 | Msa0031100:intron | 30.0% | |
| TTTGAATCTACTAACAGGAT+TGG | + | chr1_1:57669949-57669968 | None:intergenic | 30.0% | |
| CCAAATTTGAATCTACTAAC+AGG | + | chr1_1:57669954-57669973 | None:intergenic | 30.0% | |
| CCTGTTAGTAGATTCAAATT+TGG | - | chr1_1:57669951-57669970 | Msa0031100:intron | 30.0% | |
| TAACTTCTCTAATTCGTGTT+TGG | - | chr1_1:57670326-57670345 | Msa0031100:intron | 30.0% | |
| !! | CACATAATCACTTTTCTGAA+GGG | - | chr1_1:57670374-57670393 | Msa0031100:intron | 30.0% |
| !! | GAAGAATTTTAGTGCATCTT+TGG | - | chr1_1:57670612-57670631 | Msa0031100:intron | 30.0% |
| TTAAGGAGGCAAAATTGATT+TGG | - | chr1_1:57670645-57670664 | Msa0031100:intron | 30.0% | |
| GAATTTGAACGAATTGCTTT+CGG | + | chr1_1:57670832-57670851 | None:intergenic | 30.0% | |
| GAGTATGTTCTTGATTAGAA+TGG | - | chr1_1:57670898-57670917 | Msa0031100:intron | 30.0% | |
| !! | TGTTGAAAAAAGAGTGTTTG+TGG | + | chr1_1:57671067-57671086 | None:intergenic | 30.0% |
| GAAATAGGTTTCATATTGAG+TGG | - | chr1_1:57671220-57671239 | Msa0031100:intron | 30.0% | |
| ! | GTGACACTGTAATTTTGTTA+AGG | - | chr1_1:57671469-57671488 | Msa0031100:intron | 30.0% |
| AATATGTTCATCCAACGAAT+TGG | - | chr1_1:57671608-57671627 | Msa0031100:intron | 30.0% | |
| TAGTCTCTTGTCTTAATGTT+TGG | - | chr1_1:57671883-57671902 | Msa0031100:intron | 30.0% | |
| ! | TTTGTAGTGTTTGGTTTAAC+AGG | - | chr1_1:57671920-57671939 | Msa0031100:intron | 30.0% |
| ! | TTGTAGTGTTTGGTTTAACA+GGG | - | chr1_1:57671921-57671940 | Msa0031100:intron | 30.0% |
| TGAACAAATTTCCTGAATTC+GGG | + | chr1_1:57672000-57672019 | None:intergenic | 30.0% | |
| TATAACACGAAGTCATTTCT+AGG | - | chr1_1:57672079-57672098 | Msa0031100:intron | 30.0% | |
| TATGTTTGTAACTCTCATAG+AGG | - | chr1_1:57672151-57672170 | Msa0031100:intron | 30.0% | |
| TTTACAAAGTGAGTCTTCAA+GGG | + | chr1_1:57672302-57672321 | None:intergenic | 30.0% | |
| ! | TTTTACAAAGTGAGTCTTCA+AGG | + | chr1_1:57672303-57672322 | None:intergenic | 30.0% |
| TTGAAGACTCACTTTGTAAA+AGG | - | chr1_1:57672302-57672321 | Msa0031100:intron | 30.0% | |
| CTCACTTTGTAAAAGGAAAT+TGG | - | chr1_1:57672309-57672328 | Msa0031100:intron | 30.0% | |
| ACAAATGAAGAGTTGAAGTT+AGG | + | chr1_1:57672426-57672445 | None:intergenic | 30.0% | |
| ACTCTTCATTTGTCCATTAT+TGG | - | chr1_1:57672433-57672452 | Msa0031100:intron | 30.0% | |
| ATAAAGAGTTTAATGGTGGT+GGG | + | chr1_1:57672938-57672957 | None:intergenic | 30.0% | |
| ! | TAACATAATTAGGGGTATGT+TGG | - | chr1_1:57673231-57673250 | Msa0031100:intron | 30.0% |
| !! | TTAGGCTTTATTTGAGAGTT+TGG | - | chr1_1:57673503-57673522 | Msa0031100:intron | 30.0% |
| ! | CTTTGATGGATGGAAAATAT+AGG | - | chr1_1:57673545-57673564 | Msa0031100:intron | 30.0% |
| ! | TTGATGGATGGAAAATATAG+GGG | - | chr1_1:57673547-57673566 | Msa0031100:intron | 30.0% |
| !! | TTCAATTTTTAGAAAGGGGA+GGG | + | chr1_1:57674225-57674244 | None:intergenic | 30.0% |
| GAAATTTATAGGACATTGGA+AGG | + | chr1_1:57674359-57674378 | None:intergenic | 30.0% | |
| GAGAGAAATTTATAGGACAT+TGG | + | chr1_1:57674363-57674382 | None:intergenic | 30.0% | |
| ! | TGAATTGTCATTTGAGGTTA+TGG | + | chr1_1:57674502-57674521 | None:intergenic | 30.0% |
| CAAATATATAAAGGGAATGG+TGG | - | chr1_1:57674520-57674539 | Msa0031100:intron | 30.0% | |
| ATGGTGGTTTATCATATCAA+AGG | - | chr1_1:57674536-57674555 | Msa0031100:intron | 30.0% | |
| TACAAACATAGTGTGTAAGA+TGG | - | chr1_1:57674564-57674583 | Msa0031100:intron | 30.0% | |
| ATAAAAACCTACCTCCTATT+GGG | + | chr1_1:57674643-57674662 | None:intergenic | 30.0% | |
| AATAAAAACCTACCTCCTAT+TGG | + | chr1_1:57674644-57674663 | None:intergenic | 30.0% | |
| TCTTAGACGATGGATATAAT+TGG | - | chr1_1:57674831-57674850 | Msa0031100:intron | 30.0% | |
| AGAAATATCACCTAGGATTA+GGG | + | chr1_1:57674889-57674908 | None:intergenic | 30.0% | |
| AAGAAATATCACCTAGGATT+AGG | + | chr1_1:57674890-57674909 | None:intergenic | 30.0% | |
| ATCCAAGAATTATACTGTAG+GGG | + | chr1_1:57675137-57675156 | None:intergenic | 30.0% | |
| ! | CAACCAGTTTAACTTTCAAT+GGG | - | chr1_1:57675460-57675479 | Msa0031100:intron | 30.0% |
| CAACTTAATTATGAATGGGT+TGG | - | chr1_1:57675531-57675550 | Msa0031100:intron | 30.0% | |
| ! | TTTGATTGTGACTTTGTTGT+TGG | - | chr1_1:57675809-57675828 | Msa0031100:intron | 30.0% |
| GGTCCAACCAAAAAATAATA+TGG | - | chr1_1:57675928-57675947 | Msa0031100:intron | 30.0% | |
| !!! | TGCCCATATTATTTTTTGGT+TGG | + | chr1_1:57675934-57675953 | None:intergenic | 30.0% |
| !! | TGTTTAAGTTTTTGAACTCG+TGG | + | chr1_1:57675965-57675984 | None:intergenic | 30.0% |
| ATACCTGAAACTAAACTTTG+TGG | - | chr1_1:57675987-57676006 | Msa0031100:intron | 30.0% | |
| TACCTGAAACTAAACTTTGT+GGG | - | chr1_1:57675988-57676007 | Msa0031100:intron | 30.0% | |
| TGCCTGGTAAATATGTAACA+TGG | - | chr1_1:57668327-57668346 | Msa0031100:CDS | 35.0% | |
| ! | GCATTTTCTTCAATATGACG+TGG | + | chr1_1:57668477-57668496 | None:intergenic | 35.0% |
| AGAGAATGTGACTTTGATTG+AGG | + | chr1_1:57668620-57668639 | None:intergenic | 35.0% | |
| GGAAAAAACCTTCTGTTCTT+TGG | + | chr1_1:57668731-57668750 | None:intergenic | 35.0% | |
| TGAAACTGAAATGAGGAGAA+AGG | + | chr1_1:57668752-57668771 | None:intergenic | 35.0% | |
| TCTCCTCATTTCAGTTTCAA+TGG | - | chr1_1:57668753-57668772 | Msa0031100:intron | 35.0% | |
| GCCTGTTACTAATTGGAAAT+TGG | + | chr1_1:57669056-57669075 | None:intergenic | 35.0% | |
| TGAACTCAAATTCCCTTACA+TGG | + | chr1_1:57669167-57669186 | None:intergenic | 35.0% | |
| ! | AATTTGAGTTCAGTGAGATG+TGG | - | chr1_1:57669175-57669194 | Msa0031100:intron | 35.0% |
| ! | ATTTGAGTTCAGTGAGATGT+GGG | - | chr1_1:57669176-57669195 | Msa0031100:intron | 35.0% |
| ACTTTGTCATGAAGCAAAGA+TGG | + | chr1_1:57669792-57669811 | None:intergenic | 35.0% | |
| ATTCTAAGTCCAAAATTCGG+GGG | - | chr1_1:57669888-57669907 | Msa0031100:intron | 35.0% | |
| GGGATATCACCAAAAAGAAA+AGG | - | chr1_1:57669972-57669991 | Msa0031100:intron | 35.0% | |
| AGCAACGGTTCATAGTTTAT+AGG | + | chr1_1:57670236-57670255 | None:intergenic | 35.0% | |
| CCTTCAGAAAAGTGATTATG+TGG | + | chr1_1:57670376-57670395 | None:intergenic | 35.0% | |
| !! | CCACATAATCACTTTTCTGA+AGG | - | chr1_1:57670373-57670392 | Msa0031100:intron | 35.0% |
| CGAAATCAAATCATCATGAG+TGG | + | chr1_1:57670480-57670499 | None:intergenic | 35.0% | |
| GTGATTGTAAAATGTATGCC+TGG | + | chr1_1:57670960-57670979 | None:intergenic | 35.0% | |
| !! | CATCTTTTTAGTGGCCTTTT+CGG | - | chr1_1:57671115-57671134 | Msa0031100:intron | 35.0% |
| ATAGGTTTCATATTGAGTGG+TGG | - | chr1_1:57671223-57671242 | Msa0031100:intron | 35.0% | |
| TAAGTGTGTGTTAGGTTCTA+GGG | + | chr1_1:57671337-57671356 | None:intergenic | 35.0% | |
| TTAAGTGTGTGTTAGGTTCT+AGG | + | chr1_1:57671338-57671357 | None:intergenic | 35.0% | |
| ! | ACAAAATTACAGTGTCACTG+TGG | + | chr1_1:57671467-57671486 | None:intergenic | 35.0% |
| ACTTAGTATCACCAATTCGT+TGG | + | chr1_1:57671622-57671641 | None:intergenic | 35.0% | |
| TGTTAAAGTAGGGCAAAAAG+AGG | - | chr1_1:57671699-57671718 | Msa0031100:intron | 35.0% | |
| ! | GTATTTCTGAGTTTCCTCAT+AGG | + | chr1_1:57671812-57671831 | None:intergenic | 35.0% |
| TGAGGAAACTCAGAAATACA+AGG | - | chr1_1:57671813-57671832 | Msa0031100:intron | 35.0% | |
| GGAACGCAAATACTTTATTG+AGG | - | chr1_1:57671834-57671853 | Msa0031100:intron | 35.0% | |
| ! | TGAGGAGTCTAAAATTGTCA+AGG | - | chr1_1:57671852-57671871 | Msa0031100:intron | 35.0% |
| GAACAAATTTCCTGAATTCG+GGG | + | chr1_1:57671999-57672018 | None:intergenic | 35.0% | |
| CTTTGTAAATGGTCCAATAG+TGG | + | chr1_1:57672037-57672056 | None:intergenic | 35.0% | |
| CACTATTGGACCATTTACAA+AGG | - | chr1_1:57672035-57672054 | Msa0031100:intron | 35.0% | |
| !!! | GATTTTAGCTCTTAACAGAG+AGG | - | chr1_1:57672101-57672120 | Msa0031100:intron | 35.0% |
| TGAGTGTTCATTCTTGTTCT+TGG | - | chr1_1:57672234-57672253 | Msa0031100:intron | 35.0% | |
| AGGTGATGTGAATTTGATAC+TGG | + | chr1_1:57672406-57672425 | None:intergenic | 35.0% | |
| TGTAACATAGAGTTTACTGG+TGG | - | chr1_1:57672773-57672792 | Msa0031100:intron | 35.0% | |
| GATAAAGAGTTTAATGGTGG+TGG | + | chr1_1:57672939-57672958 | None:intergenic | 35.0% | |
| !! | TTTTAGGTAAGTGAGGAGAA+AGG | - | chr1_1:57673283-57673302 | Msa0031100:intron | 35.0% |
| GGGAAATATAGAGTTACTGA+CGG | - | chr1_1:57673406-57673425 | Msa0031100:intron | 35.0% | |
| !! | GCTTTATTTGAGAGTTTGGA+AGG | - | chr1_1:57673507-57673526 | Msa0031100:intron | 35.0% |
| TATTTGAGAGTTTGGAAGGA+AGG | - | chr1_1:57673511-57673530 | Msa0031100:intron | 35.0% | |
| ! | TTGATTGGAGGAGGATTTTA+GGG | + | chr1_1:57673718-57673737 | None:intergenic | 35.0% |
| ! | TTTGATTGGAGGAGGATTTT+AGG | + | chr1_1:57673719-57673738 | None:intergenic | 35.0% |
| ! | AAAAGTGTGTTTGGTTCACA+AGG | - | chr1_1:57673839-57673858 | Msa0031100:intron | 35.0% |
| ! | AAAGTGTGTTTGGTTCACAA+GGG | - | chr1_1:57673840-57673859 | Msa0031100:intron | 35.0% |
| !! | TCAATTTTTAGAAAGGGGAG+GGG | + | chr1_1:57674224-57674243 | None:intergenic | 35.0% |
| !! | GTTCAATTTTTAGAAAGGGG+AGG | + | chr1_1:57674226-57674245 | None:intergenic | 35.0% |
| !!! | TTTAGTTCGAGAGTTTTGGA+GGG | + | chr1_1:57674282-57674301 | None:intergenic | 35.0% |
| TCCAAAACTCTCGAACTAAA+CGG | - | chr1_1:57674282-57674301 | Msa0031100:intron | 35.0% | |
| TATAGGACATTGGAAGGTAA+AGG | + | chr1_1:57674353-57674372 | None:intergenic | 35.0% | |
| !! | GATAGTCAACTGTTTTGGAT+CGG | - | chr1_1:57674469-57674488 | Msa0031100:intron | 35.0% |
| GAACTAGGTTGTGATGAAAT+TGG | - | chr1_1:57674604-57674623 | Msa0031100:intron | 35.0% | |
| TAAAAACCTACCTCCTATTG+GGG | + | chr1_1:57674642-57674661 | None:intergenic | 35.0% | |
| TTGCAGAAATACAGAGATCA+CGG | - | chr1_1:57674730-57674749 | Msa0031100:intron | 35.0% | |
| !! | ATGATATTTCTAGGCTCTCT+GGG | + | chr1_1:57674788-57674807 | None:intergenic | 35.0% |
| !! | TATGATATTTCTAGGCTCTC+TGG | + | chr1_1:57674789-57674808 | None:intergenic | 35.0% |
| AAGGTGAAGAAATATCACCT+AGG | + | chr1_1:57674896-57674915 | None:intergenic | 35.0% | |
| TTCCCCTACAGTATAATTCT+TGG | - | chr1_1:57675132-57675151 | Msa0031100:intron | 35.0% | |
| AGTATCACATGGTCAAGAAT+TGG | - | chr1_1:57675354-57675373 | Msa0031100:intron | 35.0% | |
| TTCATCCAAGAATCGAAATC+AGG | - | chr1_1:57675377-57675396 | Msa0031100:intron | 35.0% | |
| AAATCAGGTTCCCCTAAATA+AGG | - | chr1_1:57675392-57675411 | Msa0031100:intron | 35.0% | |
| AATCAGGTTCCCCTAAATAA+GGG | - | chr1_1:57675393-57675412 | Msa0031100:intron | 35.0% | |
| AACTGGTTGCGTAATTAGTT+TGG | + | chr1_1:57675449-57675468 | None:intergenic | 35.0% | |
| ! | GCAACCAGTTTAACTTTCAA+TGG | - | chr1_1:57675459-57675478 | Msa0031100:intron | 35.0% |
| ! | CAGTTTAACTTTCAATGGGT+CGG | - | chr1_1:57675464-57675483 | Msa0031100:intron | 35.0% |
| ! | AGTTTAACTTTCAATGGGTC+GGG | - | chr1_1:57675465-57675484 | Msa0031100:intron | 35.0% |
| !! | GGGTTTGATAGTGAAAATGT+GGG | + | chr1_1:57675502-57675521 | None:intergenic | 35.0% |
| !! | TAATTATGAATGGGTTGGGT+TGG | - | chr1_1:57675536-57675555 | Msa0031100:intron | 35.0% |
| TAAATCAATACTGACGAGTC+AGG | - | chr1_1:57675907-57675926 | Msa0031100:intron | 35.0% | |
| ! | AACCCACAAAGTTTAGTTTC+AGG | + | chr1_1:57675993-57676012 | None:intergenic | 35.0% |
| TGAAACTAAACTTTGTGGGT+TGG | - | chr1_1:57675992-57676011 | Msa0031100:intron | 35.0% | |
| AATACATGAAATTCGGGGAT+AGG | + | chr1_1:57676114-57676133 | None:intergenic | 35.0% | |
| ATAGCTCCTAAACATGATAC+AGG | + | chr1_1:57676207-57676226 | None:intergenic | 35.0% | |
| CTATTACAAATGTACGACAC+CGG | - | chr1_1:57676223-57676242 | Msa0031100:intron | 35.0% | |
| TATTACAAATGTACGACACC+GGG | - | chr1_1:57676224-57676243 | Msa0031100:intron | 35.0% | |
| GATGTCATAACAATGTACGA+AGG | - | chr1_1:57676293-57676312 | Msa0031100:intron | 35.0% | |
| CCTTCTGTTCTTTGGATTGT+TGG | + | chr1_1:57668723-57668742 | None:intergenic | 40.0% | |
| CCAACAATCCAAAGAACAGA+AGG | - | chr1_1:57668720-57668739 | Msa0031100:intron | 40.0% | |
| AACAGTGGCCTGTTACTAAT+TGG | + | chr1_1:57669063-57669082 | None:intergenic | 40.0% | |
| !! | AACCACATTTTAGCCCTAGT+TGG | + | chr1_1:57669126-57669145 | None:intergenic | 40.0% |
| TCTTAGGGTTGAACCATGTA+AGG | - | chr1_1:57669151-57669170 | Msa0031100:intron | 40.0% | |
| CTTAGGGTTGAACCATGTAA+GGG | - | chr1_1:57669152-57669171 | Msa0031100:intron | 40.0% | |
| TTTAGGCCTCAAGATGTGTT+GGG | + | chr1_1:57669559-57669578 | None:intergenic | 40.0% | |
| GTGCGCATTGTAAAGATGTA+TGG | - | chr1_1:57669720-57669739 | Msa0031100:intron | 40.0% | |
| !! | TACTAACAGGATTGGTCCAA+GGG | + | chr1_1:57669941-57669960 | None:intergenic | 40.0% |
| CAAACATAGCAAGTCAGCAA+CGG | + | chr1_1:57670251-57670270 | None:intergenic | 40.0% | |
| !! | TTCGTGTTTGGTGTTGTTGT+TGG | - | chr1_1:57670338-57670357 | Msa0031100:intron | 40.0% |
| ! | GTTTCATAGTTTTTGTCGCC+AGG | - | chr1_1:57670939-57670958 | Msa0031100:intron | 40.0% |
| CAAGTATGAAAGAGCCTATG+AGG | - | chr1_1:57671795-57671814 | Msa0031100:intron | 40.0% | |
| GAAATTTGATCCCCGAATTC+AGG | - | chr1_1:57671986-57672005 | Msa0031100:intron | 40.0% | |
| CAACAAGATCTCACTCAAAG+AGG | - | chr1_1:57672202-57672221 | Msa0031100:intron | 40.0% | |
| GTTGTGGAATTTGGACCATT+TGG | + | chr1_1:57672275-57672294 | None:intergenic | 40.0% | |
| AAGGGAGAAGTTGTGGAATT+TGG | + | chr1_1:57672284-57672303 | None:intergenic | 40.0% | |
| AACATAGAGTTTACTGGTGG+TGG | - | chr1_1:57672776-57672795 | Msa0031100:intron | 40.0% | |
| ACATAGAGTTTACTGGTGGT+GGG | - | chr1_1:57672777-57672796 | Msa0031100:intron | 40.0% | |
| !!! | TTTTTTGAGTTTGGCGGCAT+AGG | + | chr1_1:57673368-57673387 | None:intergenic | 40.0% |
| TAGTGATGAGGGGATTAAAG+AGG | + | chr1_1:57673468-57673487 | None:intergenic | 40.0% | |
| !!! | GGATTTTAGGGAGTTTTGGA+GGG | + | chr1_1:57673706-57673725 | None:intergenic | 40.0% |
| !! | AGGATTTTAGGGAGTTTTGG+AGG | + | chr1_1:57673707-57673726 | None:intergenic | 40.0% |
| !! | AGGAGGATTTTAGGGAGTTT+TGG | + | chr1_1:57673710-57673729 | None:intergenic | 40.0% |
| TTCTCGAACCAAACGGATAA+GGG | + | chr1_1:57673752-57673771 | None:intergenic | 40.0% | |
| ATTCTCGAACCAAACGGATA+AGG | + | chr1_1:57673753-57673772 | None:intergenic | 40.0% | |
| ! | ATCCGTTTGGTTCGAGAATT+AGG | - | chr1_1:57673754-57673773 | Msa0031100:intron | 40.0% |
| CTCCTAATTCTCGAACCAAA+CGG | + | chr1_1:57673759-57673778 | None:intergenic | 40.0% | |
| ! | GTTTGGTTCGAGAATTAGGA+GGG | - | chr1_1:57673758-57673777 | Msa0031100:intron | 40.0% |
| ! | TTTGGTTCGAGAATTAGGAG+GGG | - | chr1_1:57673759-57673778 | Msa0031100:intron | 40.0% |
| ! | AGGAAGGGGAGGAATTTTAA+CGG | - | chr1_1:57673788-57673807 | Msa0031100:intron | 40.0% |
| TAACAACACGATGTAGACGA+TGG | - | chr1_1:57673956-57673975 | Msa0031100:intron | 40.0% | |
| CGATGTAGACGATGGAATAA+TGG | - | chr1_1:57673964-57673983 | Msa0031100:intron | 40.0% | |
| !!! | TTAGTTCGAGAGTTTTGGAG+GGG | + | chr1_1:57674281-57674300 | None:intergenic | 40.0% |
| !! | GTTTAGTTCGAGAGTTTTGG+AGG | + | chr1_1:57674283-57674302 | None:intergenic | 40.0% |
| !! | TCCGTTTAGTTCGAGAGTTT+TGG | + | chr1_1:57674286-57674305 | None:intergenic | 40.0% |
| CGAACTAAACGGAAATGAAG+AGG | - | chr1_1:57674293-57674312 | Msa0031100:intron | 40.0% | |
| ATTGGAAGGTAAAGGCTTTG+GGG | + | chr1_1:57674345-57674364 | None:intergenic | 40.0% | |
| CATTGGAAGGTAAAGGCTTT+GGG | + | chr1_1:57674346-57674365 | None:intergenic | 40.0% | |
| ACATTGGAAGGTAAAGGCTT+TGG | + | chr1_1:57674347-57674366 | None:intergenic | 40.0% | |
| ! | ACCTCGATAGTCAACTGTTT+TGG | - | chr1_1:57674464-57674483 | Msa0031100:intron | 40.0% |
| TCCAAAACAGTTGACTATCG+AGG | + | chr1_1:57674468-57674487 | None:intergenic | 40.0% | |
| GATGAAATTGGAGTTGAACC+TGG | - | chr1_1:57674616-57674635 | Msa0031100:intron | 40.0% | |
| ! | GTCTAAGACATCAATCTCAC+TGG | + | chr1_1:57674819-57674838 | None:intergenic | 40.0% |
| GAGATTGATGTCTTAGACGA+TGG | - | chr1_1:57674821-57674840 | Msa0031100:intron | 40.0% | |
| GCAAATGAAACCCTAATCCT+AGG | - | chr1_1:57674876-57674895 | Msa0031100:intron | 40.0% | |
| ! | ACAAGTCTCGTAAGTTGACA+AGG | - | chr1_1:57675094-57675113 | Msa0031100:intron | 40.0% |
| ! | CAAGTCTCGTAAGTTGACAA+GGG | - | chr1_1:57675095-57675114 | Msa0031100:intron | 40.0% |
| ! | AAGTCTCGTAAGTTGACAAG+GGG | - | chr1_1:57675096-57675115 | Msa0031100:intron | 40.0% |
| TGTTAACCCTCTAGATTCCA+AGG | - | chr1_1:57675295-57675314 | Msa0031100:intron | 40.0% | |
| GTTAACCCTCTAGATTCCAA+GGG | - | chr1_1:57675296-57675315 | Msa0031100:intron | 40.0% | |
| ! | TCACAGCCGACTCAAATTAT+CGG | + | chr1_1:57675330-57675349 | None:intergenic | 40.0% |
| ATAATTTGAGTCGGCTGTGA+GGG | - | chr1_1:57675330-57675349 | Msa0031100:intron | 40.0% | |
| ! | CCATGTACACCCTTATTTAG+GGG | + | chr1_1:57675405-57675424 | None:intergenic | 40.0% |
| ! | CCCATGTACACCCTTATTTA+GGG | + | chr1_1:57675406-57675425 | None:intergenic | 40.0% |
| ! | CCCTAAATAAGGGTGTACAT+GGG | - | chr1_1:57675403-57675422 | Msa0031100:intron | 40.0% |
| ! | ACCCATGTACACCCTTATTT+AGG | + | chr1_1:57675407-57675426 | None:intergenic | 40.0% |
| ! | AAATAAGGGTGTACATGGGT+TGG | - | chr1_1:57675407-57675426 | Msa0031100:intron | 40.0% |
| ! | AATAAGGGTGTACATGGGTT+GGG | - | chr1_1:57675408-57675427 | Msa0031100:intron | 40.0% |
| CGACCCATTGAAAGTTAAAC+TGG | + | chr1_1:57675466-57675485 | None:intergenic | 40.0% | |
| !! | CGGGTTTGATAGTGAAAATG+TGG | + | chr1_1:57675503-57675522 | None:intergenic | 40.0% |
| !! | CTAAACTTTGTGGGTTGGAT+CGG | - | chr1_1:57675997-57676016 | Msa0031100:intron | 40.0% |
| !! | TAAACTTTGTGGGTTGGATC+GGG | - | chr1_1:57675998-57676017 | Msa0031100:intron | 40.0% |
| !! | TTTGGTTAGTTTGAGTCACC+AGG | - | chr1_1:57676058-57676077 | Msa0031100:intron | 40.0% |
| TGCTTGCCTGTATCATGTTT+AGG | - | chr1_1:57676198-57676217 | Msa0031100:intron | 40.0% | |
| AAAGTGTGTAGAGAGAGCTT+GGG | - | chr1_1:57676259-57676278 | Msa0031100:intron | 40.0% | |
| AAACTAGGCTCCTCAACAAT+TGG | + | chr1_1:57676344-57676363 | None:intergenic | 40.0% | |
| ! | ATTGTTGAGGAGCCTAGTTT+TGG | - | chr1_1:57676344-57676363 | Msa0031100:intron | 40.0% |
| CGCACGGTTTCACAATTGAA+AGG | - | chr1_1:57668659-57668678 | Msa0031100:intron | 45.0% | |
| TGCCAACTAGGGCTAAAATG+TGG | - | chr1_1:57669121-57669140 | Msa0031100:intron | 45.0% | |
| AGTTAGTTAGTAGACAGGGC+TGG | - | chr1_1:57669533-57669552 | Msa0031100:intron | 45.0% | |
| CTTTAGGCCTCAAGATGTGT+TGG | + | chr1_1:57669560-57669579 | None:intergenic | 45.0% | |
| AATGCGCACTATTTGTCTGC+TGG | + | chr1_1:57669709-57669728 | None:intergenic | 45.0% | |
| AAGCAAAGATGGCAGATGTG+AGG | + | chr1_1:57669781-57669800 | None:intergenic | 45.0% | |
| !! | CTACTAACAGGATTGGTCCA+AGG | + | chr1_1:57669942-57669961 | None:intergenic | 45.0% |
| !! | TGTTTGGTGTTGTTGTTGGC+AGG | - | chr1_1:57670342-57670361 | Msa0031100:intron | 45.0% |
| !! | CTGAAGGGTTGAGTTGAGAA+AGG | - | chr1_1:57670389-57670408 | Msa0031100:intron | 45.0% |
| ! | TGAGTGGTGGAAGATTCACA+TGG | - | chr1_1:57671236-57671255 | Msa0031100:intron | 45.0% |
| !! | GTGTGTTAGGTTCTAGGGTT+GGG | + | chr1_1:57671332-57671351 | None:intergenic | 45.0% |
| !! | TGTGTGTTAGGTTCTAGGGT+TGG | + | chr1_1:57671333-57671352 | None:intergenic | 45.0% |
| AAGTAGGGCAAAAAGAGGAC+AGG | - | chr1_1:57671704-57671723 | Msa0031100:intron | 45.0% | |
| ! | TGTGAGTGCAATGAAGTGCT+TGG | - | chr1_1:57671769-57671788 | Msa0031100:intron | 45.0% |
| CAGAACGTTGTTGCCACTAT+TGG | - | chr1_1:57672021-57672040 | Msa0031100:intron | 45.0% | |
| AGTCTTCAAGGGAGAAGTTG+TGG | + | chr1_1:57672291-57672310 | None:intergenic | 45.0% | |
| ! | TTATAAGAAGGTGCAGCTGC+AGG | + | chr1_1:57672363-57672382 | None:intergenic | 45.0% |
| !! | GTTTAATGGTGGTGGGTTGA+CGG | + | chr1_1:57672931-57672950 | None:intergenic | 45.0% |
| ! | AGGAGAAGAGAGAGCTTTGA+TGG | - | chr1_1:57673531-57673550 | Msa0031100:intron | 45.0% |
| ! | GAAGAGAGAGCTTTGATGGA+TGG | - | chr1_1:57673535-57673554 | Msa0031100:intron | 45.0% |
| GAACTCGGAAGTTTGATTGG+AGG | + | chr1_1:57673730-57673749 | None:intergenic | 45.0% | |
| AGGGAACTCGGAAGTTTGAT+TGG | + | chr1_1:57673733-57673752 | None:intergenic | 45.0% | |
| ACCAAACGGATAAGGGAACT+CGG | + | chr1_1:57673745-57673764 | None:intergenic | 45.0% | |
| ! | CGTTTGGTTCGAGAATTAGG+AGG | - | chr1_1:57673757-57673776 | Msa0031100:intron | 45.0% |
| !! | AAGGGGAGGAATTTTAACGG+AGG | - | chr1_1:57673791-57673810 | Msa0031100:intron | 45.0% |
| !! | AGGGGAGGAATTTTAACGGA+GGG | - | chr1_1:57673792-57673811 | Msa0031100:intron | 45.0% |
| !! | AGGAATTTTAACGGAGGGGA+GGG | - | chr1_1:57673797-57673816 | Msa0031100:intron | 45.0% |
| ! | TGTGTTTGGTTCACAAGGGA+AGG | - | chr1_1:57673844-57673863 | Msa0031100:intron | 45.0% |
| ! | GTGTTTGGTTCACAAGGGAA+GGG | - | chr1_1:57673845-57673864 | Msa0031100:intron | 45.0% |
| ! | TGTTTGGTTCACAAGGGAAG+GGG | - | chr1_1:57673846-57673865 | Msa0031100:intron | 45.0% |
| !! | TTTTTAGAAAGGGGAGGGGA+GGG | + | chr1_1:57674220-57674239 | None:intergenic | 45.0% |
| !! | ATTTTTAGAAAGGGGAGGGG+AGG | + | chr1_1:57674221-57674240 | None:intergenic | 45.0% |
| ! | TTGGAAGGTAAAGGCTTTGG+GGG | + | chr1_1:57674344-57674363 | None:intergenic | 45.0% |
| AGAAAATACGGGCAACGAGT+TGG | - | chr1_1:57674854-57674873 | Msa0031100:intron | 45.0% | |
| ! | AGTCTCGTAAGTTGACAAGG+GGG | - | chr1_1:57675097-57675116 | Msa0031100:intron | 45.0% |
| ! | CACAGCCGACTCAAATTATC+GGG | + | chr1_1:57675329-57675348 | None:intergenic | 45.0% |
| GATAATTTGAGTCGGCTGTG+AGG | - | chr1_1:57675329-57675348 | Msa0031100:intron | 45.0% | |
| GGGAACCTGATTTCGATTCT+TGG | + | chr1_1:57675385-57675404 | None:intergenic | 45.0% | |
| ! | CCCCTAAATAAGGGTGTACA+TGG | - | chr1_1:57675402-57675421 | Msa0031100:intron | 45.0% |
| !! | TTATGAATGGGTTGGGTTGG+TGG | - | chr1_1:57675539-57675558 | Msa0031100:intron | 45.0% |
| !! | ATAGGAGTGTTCATGGGTGT+GGG | + | chr1_1:57676096-57676115 | None:intergenic | 45.0% |
| CACTTTCGAATGCTACAACC+CGG | + | chr1_1:57676245-57676264 | None:intergenic | 45.0% | |
| ! | GAAAGTGTGTAGAGAGAGCT+TGG | - | chr1_1:57676258-57676277 | Msa0031100:intron | 45.0% |
| !!! | GAGGAGCCTAGTTTTGGTAA+TGG | - | chr1_1:57676350-57676369 | Msa0031100:intron | 45.0% |
| !!! | GAGCCTAGTTTTGGTAATGG+TGG | - | chr1_1:57676353-57676372 | Msa0031100:intron | 45.0% |
| TCGCCACCATTACCAAAACT+AGG | + | chr1_1:57676359-57676378 | None:intergenic | 45.0% | |
| !! | ATAAATCATATTAATTAAAT+AGG | - | chr1_1:57670190-57670209 | Msa0031100:intron | 5.0% |
| !! | TATATTATGTTTATTTAATT+TGG | + | chr1_1:57670569-57670588 | None:intergenic | 5.0% |
| !!! | AAAAAGATTTTATTAAAAAA+AGG | - | chr1_1:57673383-57673402 | Msa0031100:intron | 5.0% |
| !!! | AAAAGATTTTATTAAAAAAA+GGG | - | chr1_1:57673384-57673403 | Msa0031100:intron | 5.0% |
| ! | TTTGCCACTTGACGTACGCA+CGG | - | chr1_1:57668643-57668662 | Msa0031100:intron | 50.0% |
| ! | GTTCAGTGAGATGTGGGTTG+TGG | - | chr1_1:57669182-57669201 | Msa0031100:intron | 50.0% |
| !! | CGCTTTAAGCCCCCGAATTT+TGG | + | chr1_1:57669900-57669919 | None:intergenic | 50.0% |
| AAATTCGGGGGCTTAAAGCG+AGG | - | chr1_1:57669900-57669919 | Msa0031100:intron | 50.0% | |
| AATTCGGGGGCTTAAAGCGA+GGG | - | chr1_1:57669901-57669920 | Msa0031100:intron | 50.0% | |
| !! | ACAGGATTGGTCCAAGGGTA+AGG | + | chr1_1:57669936-57669955 | None:intergenic | 50.0% |
| CAGCATAAGGCGTACCGAAA+AGG | + | chr1_1:57671132-57671151 | None:intergenic | 50.0% | |
| TTCGGTACGCCTTATGCTGA+AGG | - | chr1_1:57671133-57671152 | Msa0031100:intron | 50.0% | |
| TCGGTACGCCTTATGCTGAA+GGG | - | chr1_1:57671134-57671153 | Msa0031100:intron | 50.0% | |
| GTAGCAGTCCCTTCAGCATA+AGG | + | chr1_1:57671145-57671164 | None:intergenic | 50.0% | |
| GCTGCAGGCAATGAAGAACT+TGG | + | chr1_1:57672348-57672367 | None:intergenic | 50.0% | |
| !! | GTTTACTGGTGGTGGGTTGA+CGG | - | chr1_1:57672784-57672803 | Msa0031100:intron | 50.0% |
| GAGGAGAAAGGACATGCATC+AGG | - | chr1_1:57673295-57673314 | Msa0031100:intron | 50.0% | |
| TTGAGTTTGGCGGCATAGGA+TGG | + | chr1_1:57673364-57673383 | None:intergenic | 50.0% | |
| CTCGGAAGTTTGATTGGAGG+AGG | + | chr1_1:57673727-57673746 | None:intergenic | 50.0% | |
| TCCGAGTTCCCTTATCCGTT+TGG | - | chr1_1:57673741-57673760 | Msa0031100:intron | 50.0% | |
| GTTCGAGAATTAGGAGGGGA+GGG | - | chr1_1:57673763-57673782 | Msa0031100:intron | 50.0% | |
| TTCGAGAATTAGGAGGGGAG+GGG | - | chr1_1:57673764-57673783 | Msa0031100:intron | 50.0% | |
| !! | GGGGAGGAATTTTAACGGAG+GGG | - | chr1_1:57673793-57673812 | Msa0031100:intron | 50.0% |
| !! | GAGGAATTTTAACGGAGGGG+AGG | - | chr1_1:57673796-57673815 | Msa0031100:intron | 50.0% |
| !! | GGAATTTTAACGGAGGGGAG+GGG | - | chr1_1:57673798-57673817 | Msa0031100:intron | 50.0% |
| !! | TTTTAGAAAGGGGAGGGGAG+GGG | + | chr1_1:57674219-57674238 | None:intergenic | 50.0% |
| !!! | TTCGAGAGTTTTGGAGGGGA+GGG | + | chr1_1:57674277-57674296 | None:intergenic | 50.0% |
| !! | CCTAGTTCTGCATTGTCGCT+TGG | + | chr1_1:57674592-57674611 | None:intergenic | 50.0% |
| CCAAGCGACAATGCAGAACT+AGG | - | chr1_1:57674589-57674608 | Msa0031100:intron | 50.0% | |
| ! | TAAGTTGACAAGGGGGTGCA+GGG | - | chr1_1:57675104-57675123 | Msa0031100:intron | 50.0% |
| ACCCTCTAGATTCCAAGGGT+AGG | - | chr1_1:57675300-57675319 | Msa0031100:intron | 50.0% | |
| CCCTACCCTTGGAATCTAGA+GGG | + | chr1_1:57675304-57675323 | None:intergenic | 50.0% | |
| CCCTCTAGATTCCAAGGGTA+GGG | - | chr1_1:57675301-57675320 | Msa0031100:intron | 50.0% | |
| CCTCTAGATTCCAAGGGTAG+GGG | - | chr1_1:57675302-57675321 | Msa0031100:intron | 50.0% | |
| GGGGACCCGATAATTTGAGT+CGG | - | chr1_1:57675321-57675340 | Msa0031100:intron | 50.0% | |
| !! | GCTGTGAGGGAAGTATCACA+TGG | - | chr1_1:57675343-57675362 | Msa0031100:intron | 50.0% |
| !! | GTACATGGGTTGGGTTGGAT+CGG | - | chr1_1:57675417-57675436 | Msa0031100:intron | 50.0% |
| !! | GATAGGAGTGTTCATGGGTG+TGG | + | chr1_1:57676097-57676116 | None:intergenic | 50.0% |
| !! | TCGGGGATAGGAGTGTTCAT+GGG | + | chr1_1:57676102-57676121 | None:intergenic | 50.0% |
| !! | TTCGGGGATAGGAGTGTTCA+TGG | + | chr1_1:57676103-57676122 | None:intergenic | 50.0% |
| CGTGCCAACACCAATTGTTG+AGG | - | chr1_1:57676331-57676350 | Msa0031100:intron | 50.0% | |
| GGCTCCTCAACAATTGGTGT+TGG | + | chr1_1:57676338-57676357 | None:intergenic | 50.0% | |
| GAAACCGTGCGTACGTCAAG+TGG | + | chr1_1:57668650-57668669 | None:intergenic | 55.0% | |
| ! | GGCTTGGTTCACCTTACCCT+TGG | - | chr1_1:57669922-57669941 | Msa0031100:intron | 55.0% |
| GAGGACAGGCAACTCATGAC+AGG | - | chr1_1:57671718-57671737 | Msa0031100:intron | 55.0% | |
| CATAGGATGGAGGTTTCGCG+GGG | + | chr1_1:57673351-57673370 | None:intergenic | 55.0% | |
| GCATAGGATGGAGGTTTCGC+GGG | + | chr1_1:57673352-57673371 | None:intergenic | 55.0% | |
| GGCATAGGATGGAGGTTTCG+CGG | + | chr1_1:57673353-57673372 | None:intergenic | 55.0% | |
| AGTTTGGCGGCATAGGATGG+AGG | + | chr1_1:57673361-57673380 | None:intergenic | 55.0% | |
| GGTTCGAGAATTAGGAGGGG+AGG | - | chr1_1:57673762-57673781 | Msa0031100:intron | 55.0% | |
| AGAATTAGGAGGGGAGGGGA+AGG | - | chr1_1:57673768-57673787 | Msa0031100:intron | 55.0% | |
| !! | ATTTTAACGGAGGGGAGGGG+AGG | - | chr1_1:57673801-57673820 | Msa0031100:intron | 55.0% |
| ! | TTTTAACGGAGGGGAGGGGA+GGG | - | chr1_1:57673802-57673821 | Msa0031100:intron | 55.0% |
| TTGGTTCACAAGGGAAGGGG+AGG | - | chr1_1:57673849-57673868 | Msa0031100:intron | 55.0% | |
| TGGTTCACAAGGGAAGGGGA+GGG | - | chr1_1:57673850-57673869 | Msa0031100:intron | 55.0% | |
| !!! | TCGAGAGTTTTGGAGGGGAG+GGG | + | chr1_1:57674276-57674295 | None:intergenic | 55.0% |
| !!! | GTTCGAGAGTTTTGGAGGGG+AGG | + | chr1_1:57674278-57674297 | None:intergenic | 55.0% |
| GAGTTGAACCTGGCCCCAAT+AGG | - | chr1_1:57674626-57674645 | Msa0031100:intron | 55.0% | |
| TTGAACCTGGCCCCAATAGG+AGG | - | chr1_1:57674629-57674648 | Msa0031100:intron | 55.0% | |
| ! | GTAAGTTGACAAGGGGGTGC+AGG | - | chr1_1:57675103-57675122 | Msa0031100:intron | 55.0% |
| ! | AAGTTGACAAGGGGGTGCAG+GGG | - | chr1_1:57675105-57675124 | Msa0031100:intron | 55.0% |
| CCCCTACCCTTGGAATCTAG+AGG | + | chr1_1:57675305-57675324 | None:intergenic | 55.0% | |
| ATTATCGGGTCCCCTACCCT+TGG | + | chr1_1:57675315-57675334 | None:intergenic | 55.0% | |
| !! | AGGGTGTACATGGGTTGGGT+TGG | - | chr1_1:57675412-57675431 | Msa0031100:intron | 55.0% |
| AGTTTGAGTCACCAGGTCCG+TGG | - | chr1_1:57676065-57676084 | Msa0031100:intron | 55.0% | |
| GTTTGAGTCACCAGGTCCGT+GGG | - | chr1_1:57676066-57676085 | Msa0031100:intron | 55.0% | |
| GTGTGTAGAGAGAGCTTGGG+CGG | - | chr1_1:57676262-57676281 | Msa0031100:intron | 55.0% | |
| ! | GGCTGGCCCAACACATCTTG+AGG | - | chr1_1:57669550-57669569 | Msa0031100:intron | 60.0% |
| ! | CGCGGGGTGCCAACGTATTT+GGG | + | chr1_1:57673335-57673354 | None:intergenic | 60.0% |
| ! | TCGCGGGGTGCCAACGTATT+TGG | + | chr1_1:57673336-57673355 | None:intergenic | 60.0% |
| TTAGGAGGGGAGGGGAAGGA+AGG | - | chr1_1:57673772-57673791 | Msa0031100:intron | 60.0% | |
| TAGGAGGGGAGGGGAAGGAA+GGG | - | chr1_1:57673773-57673792 | Msa0031100:intron | 60.0% | |
| !!! | AGTTTTGGAGGGGAGGGGAG+GGG | + | chr1_1:57674271-57674290 | None:intergenic | 60.0% |
| !!! | GAGTTTTGGAGGGGAGGGGA+GGG | + | chr1_1:57674272-57674291 | None:intergenic | 60.0% |
| !!! | AGAGTTTTGGAGGGGAGGGG+AGG | + | chr1_1:57674273-57674292 | None:intergenic | 60.0% |
| ACCTGGCCCCAATAGGAGGT+AGG | - | chr1_1:57674633-57674652 | Msa0031100:intron | 60.0% | |
| ACCTACCTCCTATTGGGGCC+AGG | + | chr1_1:57674637-57674656 | None:intergenic | 60.0% | |
| ! | AGTTGACAAGGGGGTGCAGG+GGG | - | chr1_1:57675106-57675125 | Msa0031100:intron | 60.0% |
| GGGGGCTTAAAGCGAGGGCT+TGG | - | chr1_1:57669906-57669925 | Msa0031100:intron | 65.0% | |
| AGGAGGGGAGGGGAAGGAAG+GGG | - | chr1_1:57673774-57673793 | Msa0031100:intron | 65.0% | |
| CATGGGTGTGGGTCGACCCA+CGG | + | chr1_1:57676085-57676104 | None:intergenic | 65.0% | |
| AGGGGAGGGGAAGGAAGGGG+AGG | - | chr1_1:57673777-57673796 | Msa0031100:intron | 70.0% | |
| TGTGGGTCGACCCACGGACC+TGG | + | chr1_1:57676079-57676098 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57668326 | 57676388 | 57668326 | ID=Msa0031100;Name=Msa0031100 |
| chr1_1 | mRNA | 57668326 | 57676388 | 57668326 | ID=Msa0031100-mRNA-1;Parent=Msa0031100;Name=Msa0031100-mRNA-1;_AED=0.29;_eAED=0.30;_QI=0|0|0|0.66|0.4|0.33|6|0|162 |
| chr1_1 | exon | 57676382 | 57676388 | 57676382 | ID=Msa0031100-mRNA-1:exon:17442;Parent=Msa0031100-mRNA-1 |
| chr1_1 | exon | 57674495 | 57674502 | 57674495 | ID=Msa0031100-mRNA-1:exon:17441;Parent=Msa0031100-mRNA-1 |
| chr1_1 | exon | 57674203 | 57674289 | 57674203 | ID=Msa0031100-mRNA-1:exon:17440;Parent=Msa0031100-mRNA-1 |
| chr1_1 | exon | 57672847 | 57673056 | 57672847 | ID=Msa0031100-mRNA-1:exon:17439;Parent=Msa0031100-mRNA-1 |
| chr1_1 | exon | 57669963 | 57669970 | 57669963 | ID=Msa0031100-mRNA-1:exon:17438;Parent=Msa0031100-mRNA-1 |
| chr1_1 | exon | 57668326 | 57668494 | 57668326 | ID=Msa0031100-mRNA-1:exon:17437;Parent=Msa0031100-mRNA-1 |
| chr1_1 | CDS | 57676382 | 57676388 | 57676382 | ID=Msa0031100-mRNA-1:cds;Parent=Msa0031100-mRNA-1 |
| chr1_1 | CDS | 57674495 | 57674502 | 57674495 | ID=Msa0031100-mRNA-1:cds;Parent=Msa0031100-mRNA-1 |
| chr1_1 | CDS | 57674203 | 57674289 | 57674203 | ID=Msa0031100-mRNA-1:cds;Parent=Msa0031100-mRNA-1 |
| chr1_1 | CDS | 57672847 | 57673056 | 57672847 | ID=Msa0031100-mRNA-1:cds;Parent=Msa0031100-mRNA-1 |
| chr1_1 | CDS | 57669963 | 57669970 | 57669963 | ID=Msa0031100-mRNA-1:cds;Parent=Msa0031100-mRNA-1 |
| chr1_1 | CDS | 57668326 | 57668494 | 57668326 | ID=Msa0031100-mRNA-1:cds;Parent=Msa0031100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
