AlfalfaGEDB | Msa1111870

M. sativa cultivar zhongmu-4 / Msa1111870

KEGG: K13448|K16465
GO: GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0016020 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0097305 GO:0097306 GO:1901527 GO:1901700 GO:1901701
PFAM: PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111870	XP_003623646.1	98.246	171	3	0	1	171	1	171	1.09e-118	342

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111870	sp\|P41210\|CATR_ATRNU	78.481	158	33	1	15	171	10	167	8.34e-84	247

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111870	G7KY76	98.246	171	3	0	1	171	1	171	5.21e-119	342

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002240	Msa1111870	0.810795	9.652545e-51	-8.615850e-47
Msa0003890	Msa1111870	0.814821	1.267622e-51	-8.615850e-47
Msa0005270	Msa1111870	0.807928	3.976630e-50	-8.615850e-47
Msa0006110	Msa1111870	0.825282	5.104442e-54	-8.615850e-47
Msa0007440	Msa1111870	0.856506	3.072345e-62	-8.615850e-47
Msa0007470	Msa1111870	0.835523	1.596825e-56	-8.615850e-47
Msa0007990	Msa1111870	0.835117	2.021948e-56	-8.615850e-47
Msa0008200	Msa1111870	0.807861	4.110531e-50	-8.615850e-47
Msa0010490	Msa1111870	0.836075	1.156960e-56	-8.615850e-47
Msa0010500	Msa1111870	0.822174	2.728463e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111870	MtrunA17_Chr7g0245231	98.246	171	3	1	171	1	171	1.00e-122	342
Msa1111870	MtrunA17_Chr6g0450921	91.716	169	14	3	171	2	170	4.09e-113	318
Msa1111870	MtrunA17_Chr3g0093271	40.854	164	97	1	164	34	197	1.90e-38	130
Msa1111870	MtrunA17_Chr3g0093271	45.455	66	36	29	94	135	200	3.09e-11	59.3
Msa1111870	MtrunA17_Chr5g0440931	44.056	143	80	22	164	4	146	4.18e-38	127
Msa1111870	MtrunA17_Chr5g0440931	45.455	66	36	29	94	84	149	1.49e-11	59.3
Msa1111870	MtrunA17_Chr6g0460211	44.056	143	80	22	164	4	146	1.02e-37	126
Msa1111870	MtrunA17_Chr6g0460211	45.455	66	36	29	94	84	149	1.53e-11	59.3
Msa1111870	MtrunA17_Chr1g0188171	42.466	146	84	21	166	3	148	1.31e-37	126
Msa1111870	MtrunA17_Chr7g0254731	43.357	143	81	22	164	4	146	2.86e-37	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111870	AT3G50360.1	74.850	167	40	1	3	169	2	166	1.78e-81	238
Msa1111870	AT4G37010.2	64.516	155	54	1	16	169	16	170	3.75e-66	200
Msa1111870	AT4G37010.1	64.516	155	54	1	16	169	12	166	4.23e-66	199
Msa1111870	AT1G66410.1	44.056	143	80	0	22	164	4	146	1.92e-38	129
Msa1111870	AT1G66410.1	46.970	66	35	0	29	94	84	149	5.86e-12	60.8
Msa1111870	AT5G37780.1	44.056	143	80	0	22	164	4	146	1.92e-38	129
Msa1111870	AT5G37780.1	46.970	66	35	0	29	94	84	149	5.86e-12	60.8
Msa1111870	AT3G56800.1	44.056	143	80	0	22	164	4	146	9.52e-38	127
Msa1111870	AT3G56800.1	45.455	66	36	0	29	94	84	149	1.58e-11	59.7
Msa1111870	AT2G41110.1	44.056	143	80	0	22	164	4	146	9.52e-38	127

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Find 60 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGATAGCAGATGTCGAC+AGG	0.463318	7_3:+57647154	Msa1111870:CDS
AAGCGGATTGCAAAAGAGCT+AGG	0.569005	7_3:+57647396	Msa1111870:CDS
AATGATAGCAGATGTCGACA+GGG	0.695960	7_3:+57647155	Msa1111870:CDS
ACTTGCTCTGGAATGGTTGT+CGG	0.466816	7_3:-57649513	None:intergenic
AGACATACATCAATGCTCAC+AGG	0.630972	7_3:-57649287	None:intergenic
AGATTCAACAACAAACAAAG+AGG	0.630713	7_3:+57646359	Msa1111870:CDS
AGGAGAAAGAGACACTAAAG+AGG	0.570607	7_3:+57647233	Msa1111870:CDS
AGGAGCTTAATGTTGCTATG+AGG	0.614526	7_3:+57646556	Msa1111870:CDS
AGTGTCTCTTTCTCCTATTT+TGG	0.237506	7_3:-57647226	None:intergenic
ATAATATGCAGATGATCGAG+AGG	0.639575	7_3:+57649061	Msa1111870:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGACAGTTCTTGATCAA+GGG	-	chr7_3:57646288-57646307	None:intergenic	30.0%
AGATTCAACAACAAACAAAG+AGG	+	chr7_3:57646359-57646378	Msa1111870:CDS	30.0%
TTTGAATTATTCGACACTGA+TGG	+	chr7_3:57646428-57646447	Msa1111870:CDS	30.0%
TTCATTCATCTCAAATCCAA+GGG	-	chr7_3:57646671-57646690	None:intergenic	30.0%
ATTGTTGTAGCATTTAGCTA+TGG	+	chr7_3:57646958-57646977	Msa1111870:intron	30.0%
ATTTAGAGATAGGGATTCAA+TGG	+	chr7_3:57646995-57647014	Msa1111870:intron	30.0%
TGTATTGTAGGGTAAGATAT+CGG	+	chr7_3:57647362-57647381	Msa1111870:intron	30.0%
CTAAAAAGTTAGAACTAGCA+AGG	-	chr7_3:57647498-57647517	None:intergenic	30.0%
ACATAATTTGAGCTATAGAG+AGG	+	chr7_3:57647860-57647879	Msa1111870:intron	30.0%
CATAATTTGAGCTATAGAGA+GGG	+	chr7_3:57647861-57647880	Msa1111870:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	57646061	57649555	57646061	ID=Msa1111870;Name=Msa1111870
chr7_3	mRNA	57646061	57649555	57646061	ID=Msa1111870-mRNA-1;Parent=Msa1111870;Name=Msa1111870-mRNA-1;_AED=0.16;_eAED=0.16;_QI=114\|1\|1\|1\|1\|1\|7\|419\|171
chr7_3	exon	57646061	57646177	57646061	ID=Msa1111870-mRNA-1:exon:12499;Parent=Msa1111870-mRNA-1
chr7_3	exon	57646329	57646455	57646329	ID=Msa1111870-mRNA-1:exon:12500;Parent=Msa1111870-mRNA-1
chr7_3	exon	57646541	57646577	57646541	ID=Msa1111870-mRNA-1:exon:12501;Parent=Msa1111870-mRNA-1
chr7_3	exon	57646666	57646693	57646666	ID=Msa1111870-mRNA-1:exon:12502;Parent=Msa1111870-mRNA-1
chr7_3	exon	57647144	57647296	57647144	ID=Msa1111870-mRNA-1:exon:12503;Parent=Msa1111870-mRNA-1
chr7_3	exon	57647372	57647474	57647372	ID=Msa1111870-mRNA-1:exon:12504;Parent=Msa1111870-mRNA-1
chr7_3	exon	57649072	57649555	57649072	ID=Msa1111870-mRNA-1:exon:12505;Parent=Msa1111870-mRNA-1
chr7_3	five_prime_UTR	57646061	57646174	57646061	ID=Msa1111870-mRNA-1:five_prime_utr;Parent=Msa1111870-mRNA-1
chr7_3	CDS	57646175	57646177	57646175	ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3	CDS	57646329	57646455	57646329	ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3	CDS	57646541	57646577	57646541	ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3	CDS	57646666	57646693	57646666	ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3	CDS	57647144	57647296	57647144	ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3	CDS	57647372	57647474	57647372	ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3	CDS	57649072	57649136	57649072	ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3	three_prime_UTR	57649137	57649555	57649137	ID=Msa1111870-mRNA-1:three_prime_utr;Parent=Msa1111870-mRNA-1

Gene Sequence

>Msa1111870

ATGTCATCTTCTATACTTAGAGGAGATTCCAGAAGATTCAACAACAAACAAAGAGGAAAACATCATTTGACGCAACAGAAGAGACAAGAGATTAAAGAAGCTTTTGAATTATTCGACACTGATGGCTCAGGTACTATTGATGCCAAGGAGCTTAATGTTGCTATGAGGGCCCTTGGATTTGAGATGAATGAAGAGCAAATTGAGCAAATGATAGCAGATGTCGACAGGGATGGGAGTGGAGCAATCGACTATGATGAATTTGAGCACATGATGACGGCCAAAATAGGAGAAAGAGACACTAAAGAGGAGCTCATGAAAGCTTTCCATATTATTGATCAAGACAAAAATGGTAAGATATCGGCATCGGATATCAAGCGGATTGCAAAAGAGCTAGGTCAAAATTTTACTGATAGAGAGATTCAGGAGATGGTTGATGAAGCAGACCAAAATAATGATCGAGAGGTTGATCCAGAGGAGTTCATCATGATGATGAACACAACAGGCTACCGTCACTAG

Protein sequence

>Msa1111870

MSSSILRGDSRRFNNKQRGKHHLTQQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMNEEQIEQMIADVDRDGSGAIDYDEFEHMMTAKIGERDTKEELMKAFHIIDQDKNGKISASDIKRIAKELGQNFTDREIQEMVDEADQNNDREVDPEEFIMMMNTTGYRH*