AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1111870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111870 MtrunA17_Chr7g0245231 98.246 171 3 0 1 171 1 171 1.00e-122 342
Msa1111870 MtrunA17_Chr6g0450921 91.716 169 14 0 3 171 2 170 4.09e-113 318
Msa1111870 MtrunA17_Chr3g0093271 40.854 164 97 0 1 164 34 197 1.90e-38 130
Msa1111870 MtrunA17_Chr3g0093271 45.455 66 36 0 29 94 135 200 3.09e-11 59.3
Msa1111870 MtrunA17_Chr5g0440931 44.056 143 80 0 22 164 4 146 4.18e-38 127
Msa1111870 MtrunA17_Chr5g0440931 45.455 66 36 0 29 94 84 149 1.49e-11 59.3
Msa1111870 MtrunA17_Chr6g0460211 44.056 143 80 0 22 164 4 146 1.02e-37 126
Msa1111870 MtrunA17_Chr6g0460211 45.455 66 36 0 29 94 84 149 1.53e-11 59.3
Msa1111870 MtrunA17_Chr1g0188171 42.466 146 84 0 21 166 3 148 1.31e-37 126
Msa1111870 MtrunA17_Chr7g0254731 43.357 143 81 0 22 164 4 146 2.86e-37 125
Msa1111870 MtrunA17_Chr7g0254731 46.970 66 35 0 29 94 84 149 3.14e-12 61.2
Msa1111870 MtrunA17_Chr1g0166281 43.836 146 82 0 23 168 5 150 2.86e-36 123
Msa1111870 MtrunA17_Chr1g0185001 38.095 147 88 2 21 165 3 148 2.14e-27 100
Msa1111870 MtrunA17_Chr1g0161211 36.691 139 88 0 26 164 42 180 3.48e-22 88.2
Msa1111870 MtrunA17_Chr7g0267751 34.965 143 90 2 22 164 432 571 4.27e-22 92.0
Msa1111870 MtrunA17_Chr1g0176751 35.417 144 90 2 22 165 421 561 8.16e-22 91.3
Msa1111870 MtrunA17_Chr8g0391691 35.915 142 90 1 30 171 36 176 1.50e-21 86.7
Msa1111870 MtrunA17_Chr8g0391691 49.153 59 30 0 29 87 108 166 3.63e-13 64.3
Msa1111870 MtrunA17_Chr7g0274101 36.301 146 93 0 22 167 4 149 2.27e-21 85.1
Msa1111870 MtrunA17_Chr4g0033601 32.394 142 94 1 30 169 5 146 4.52e-21 84.3
Msa1111870 MtrunA17_Chr8g0385341 36.620 142 87 2 23 164 328 466 1.63e-20 87.4
Msa1111870 MtrunA17_Chr8g0392951 34.559 136 88 1 30 165 24 158 2.41e-20 82.8
Msa1111870 MtrunA17_Chr7g0245911 36.986 146 83 4 30 166 47 192 3.34e-20 83.2
Msa1111870 MtrunA17_Chr3g0111371 35.714 140 86 2 28 167 3 138 3.43e-20 81.6
Msa1111870 MtrunA17_Chr3g0111371 38.961 77 47 0 16 92 60 136 3.90e-12 60.5
Msa1111870 MtrunA17_Chr3g0131181 35.915 142 88 2 23 164 327 465 7.81e-20 85.5
Msa1111870 MtrunA17_Chr8g0366401 29.114 158 109 1 15 169 2 159 8.94e-20 81.3
Msa1111870 MtrunA17_Chr8g0351681 36.364 143 83 3 30 164 49 191 1.85e-19 81.3
Msa1111870 MtrunA17_Chr5g0434951 34.074 135 88 1 30 164 4 137 2.80e-19 79.3
Msa1111870 MtrunA17_Chr5g0397101 33.803 142 92 2 23 164 364 503 3.52e-19 83.6
Msa1111870 MtrunA17_Chr5g0444171 36.242 149 85 4 22 166 389 531 4.90e-19 83.2
Msa1111870 MtrunA17_Chr8g0387671 34.266 143 92 2 22 164 363 503 5.49e-19 83.2
Msa1111870 MtrunA17_Chr1g0200601 32.394 142 93 2 23 164 328 466 3.19e-18 80.9
Msa1111870 MtrunA17_Chr5g0448721 32.394 142 93 2 23 164 394 532 4.26e-18 80.5
Msa1111870 MtrunA17_Chr1g0170281 33.099 142 92 2 23 164 416 554 6.78e-18 80.1
Msa1111870 MtrunA17_Chr5g0398751 28.873 142 99 1 23 164 5 144 8.52e-18 75.5
Msa1111870 MtrunA17_Chr0c02g0489761 34.266 143 90 3 23 164 376 515 1.36e-17 79.3
Msa1111870 MtrunA17_Chr4g0062221 30.657 137 93 2 30 164 11 147 1.49e-17 75.5
Msa1111870 MtrunA17_Chr5g0441691 32.867 143 92 3 23 164 366 505 2.48e-17 78.6
Msa1111870 MtrunA17_Chr4g0044961 31.013 158 106 2 14 171 41 195 5.37e-17 74.7
Msa1111870 MtrunA17_Chr4g0074811 33.793 145 92 3 23 166 389 530 5.79e-17 77.4
Msa1111870 MtrunA17_Chr4g0059951 33.113 151 97 4 22 170 370 518 7.64e-17 77.0
Msa1111870 MtrunA17_Chr1g0169581 30.657 137 93 1 30 164 4 140 1.99e-16 72.0
Msa1111870 MtrunA17_Chr1g0169581 39.394 66 40 0 27 92 76 141 1.74e-11 58.9
Msa1111870 MtrunA17_Chr1g0157131 33.103 145 91 3 22 164 371 511 5.15e-16 74.7
Msa1111870 MtrunA17_Chr8g0373691 31.690 142 95 2 24 164 47 187 7.51e-16 71.6
Msa1111870 MtrunA17_Chr5g0402331 34.028 144 90 4 25 165 43 184 9.05e-16 71.2
Msa1111870 MtrunA17_Chr7g0256701 30.405 148 98 3 23 165 66 213 1.46e-15 71.2
Msa1111870 MtrunA17_Chr7g0256171 31.690 142 95 1 30 169 5 146 2.25e-15 69.3
Msa1111870 MtrunA17_Chr3g0098951 33.548 155 88 5 22 166 380 529 7.09e-15 71.2
Msa1111870 MtrunA17_Chr5g0402361 34.028 144 90 4 25 165 215 356 7.65e-15 70.9
Msa1111870 MtrunA17_Chr5g0402361 33.099 142 93 2 25 165 43 183 1.74e-14 70.1
Msa1111870 MtrunA17_Chr5g0402361 29.651 172 93 2 27 170 117 288 2.46e-14 69.3
Msa1111870 MtrunA17_Chr7g0245371 29.333 150 92 3 31 167 25 173 1.37e-14 67.8
Msa1111870 MtrunA17_Chr8g0368681 25.874 143 104 1 24 164 6 148 1.43e-14 67.4
Msa1111870 MtrunA17_Chr7g0242561 30.201 149 102 2 23 170 354 501 2.84e-14 69.7
Msa1111870 MtrunA17_Chr6g0482731 43.077 65 37 0 31 95 100 164 6.48e-14 66.2
Msa1111870 MtrunA17_Chr6g0482731 29.932 147 93 3 30 171 26 167 7.81e-12 60.5
Msa1111870 MtrunA17_Chr2g0329371 29.167 144 98 2 30 169 64 207 2.11e-13 65.5
Msa1111870 MtrunA17_Chr7g0225921 29.496 139 96 2 27 164 3 140 6.16e-13 62.8
Msa1111870 MtrunA17_Chr4g0074791 33.577 137 77 4 31 166 401 524 7.49e-13 65.5
Msa1111870 MtrunA17_Chr4g0057651 29.286 140 98 1 26 165 2 140 8.44e-13 62.4
Msa1111870 MtrunA17_Chr3g0116151 31.250 128 87 1 38 165 14 140 8.80e-13 62.4
Msa1111870 MtrunA17_Chr3g0116141 31.250 128 87 1 38 165 13 139 9.47e-13 62.0
Msa1111870 MtrunA17_Chr3g0100541 31.081 148 83 3 23 168 45 175 1.29e-12 62.8
Msa1111870 MtrunA17_Chr3g0100511 30.769 143 80 3 23 163 45 170 1.98e-12 62.0
Msa1111870 MtrunA17_Chr4g0064231 28.750 160 94 4 28 168 62 220 2.64e-12 62.8
Msa1111870 MtrunA17_Chr3g0121191 41.176 68 40 0 24 91 150 217 6.28e-12 61.6
Msa1111870 MtrunA17_Chr4g0057641 29.630 135 94 1 30 164 6 139 7.95e-12 59.7
Msa1111870 MtrunA17_Chr4g0057661 29.412 136 95 1 30 165 6 140 1.76e-11 58.9
Msa1111870 MtrunA17_Chr6g0459231 29.771 131 91 1 34 164 12 141 1.87e-11 58.9
Msa1111870 MtrunA17_Chr1g0176421 27.907 129 90 2 23 151 459 584 4.51e-11 60.5
Msa1111870 MtrunA17_Chr1g0173541 28.477 151 104 4 22 170 349 497 7.60e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111870 AT3G50360.1 74.850 167 40 1 3 169 2 166 1.78e-81 238
Msa1111870 AT4G37010.2 64.516 155 54 1 16 169 16 170 3.75e-66 200
Msa1111870 AT4G37010.1 64.516 155 54 1 16 169 12 166 4.23e-66 199
Msa1111870 AT1G66410.1 44.056 143 80 0 22 164 4 146 1.92e-38 129
Msa1111870 AT1G66410.1 46.970 66 35 0 29 94 84 149 5.86e-12 60.8
Msa1111870 AT5G37780.1 44.056 143 80 0 22 164 4 146 1.92e-38 129
Msa1111870 AT5G37780.1 46.970 66 35 0 29 94 84 149 5.86e-12 60.8
Msa1111870 AT3G56800.1 44.056 143 80 0 22 164 4 146 9.52e-38 127
Msa1111870 AT3G56800.1 45.455 66 36 0 29 94 84 149 1.58e-11 59.7
Msa1111870 AT2G41110.1 44.056 143 80 0 22 164 4 146 9.52e-38 127
Msa1111870 AT2G41110.1 45.455 66 36 0 29 94 84 149 1.58e-11 59.7
Msa1111870 AT2G27030.1 44.056 143 80 0 22 164 4 146 9.52e-38 127
Msa1111870 AT2G27030.1 45.455 66 36 0 29 94 84 149 1.58e-11 59.7
Msa1111870 AT2G27030.3 44.056 143 80 0 22 164 4 146 1.29e-37 127
Msa1111870 AT2G27030.3 45.455 66 36 0 29 94 84 149 1.18e-11 60.5
Msa1111870 AT3G43810.1 44.056 143 80 0 22 164 4 146 1.41e-37 126
Msa1111870 AT3G43810.1 45.455 66 36 0 29 94 84 149 2.11e-11 59.3
Msa1111870 AT3G43810.2 44.366 142 79 0 23 164 5 146 3.60e-37 127
Msa1111870 AT3G43810.2 44.615 65 36 0 29 93 84 148 8.89e-11 58.5
Msa1111870 AT5G21274.1 43.357 143 81 0 22 164 4 146 4.97e-37 125
Msa1111870 AT5G21274.1 45.455 66 36 0 29 94 84 149 1.74e-11 59.3
Msa1111870 AT3G22930.1 42.177 147 85 0 22 168 27 173 6.69e-36 123
Msa1111870 AT5G37780.2 39.873 158 80 1 22 164 4 161 1.45e-34 119
Msa1111870 AT5G37780.2 46.970 66 35 0 29 94 99 164 8.26e-12 60.5
Msa1111870 AT2G41110.2 40.645 155 80 1 22 164 4 158 4.15e-34 118
Msa1111870 AT2G41110.2 45.455 66 36 0 29 94 96 161 1.93e-11 59.7
Msa1111870 AT4G14640.1 40.845 142 84 0 23 164 6 147 1.51e-33 116
Msa1111870 AT5G37780.3 37.278 169 80 1 22 164 4 172 9.81e-33 115
Msa1111870 AT5G37780.3 46.970 66 35 0 29 94 110 175 7.79e-12 60.8
Msa1111870 AT1G66410.2 41.176 153 80 1 22 164 4 156 1.53e-32 114
Msa1111870 AT1G66410.2 46.970 66 35 0 29 94 94 159 5.88e-12 60.8
Msa1111870 AT5G37780.4 41.803 122 71 0 43 164 12 133 5.06e-30 107
Msa1111870 AT5G37780.4 46.970 66 35 0 29 94 71 136 3.89e-12 60.8
Msa1111870 AT1G66410.4 41.818 110 64 0 55 164 1 110 2.32e-26 97.1
Msa1111870 AT1G66410.4 46.970 66 35 0 29 94 48 113 2.05e-12 60.8
Msa1111870 AT1G66410.3 41.818 110 64 0 55 164 1 110 2.32e-26 97.1
Msa1111870 AT1G66410.3 46.970 66 35 0 29 94 48 113 2.05e-12 60.8
Msa1111870 AT1G24620.1 35.185 162 99 2 9 170 21 176 2.84e-26 99.0
Msa1111870 AT3G43810.4 41.818 110 64 0 55 164 1 110 7.47e-26 95.9
Msa1111870 AT3G43810.4 45.455 66 36 0 29 94 48 113 7.49e-12 59.7
Msa1111870 AT3G43810.3 41.818 110 64 0 55 164 1 110 7.47e-26 95.9
Msa1111870 AT3G43810.3 45.455 66 36 0 29 94 48 113 7.49e-12 59.7
Msa1111870 AT4G14640.2 38.017 121 75 0 44 164 9 129 1.43e-25 95.5
Msa1111870 AT4G14640.2 49.206 63 32 0 29 91 67 129 2.18e-13 63.9
Msa1111870 AT3G22930.2 43.810 105 59 0 22 126 27 131 2.32e-25 95.1
Msa1111870 AT4G14640.3 41.748 103 60 0 23 125 6 108 7.88e-23 88.2
Msa1111870 AT5G23580.1 37.324 142 86 2 23 164 320 458 3.27e-22 92.8
Msa1111870 AT3G51920.1 34.014 147 97 0 23 169 5 151 4.30e-22 87.0
Msa1111870 AT2G43290.1 34.459 148 90 3 29 169 64 211 3.00e-21 86.7
Msa1111870 AT2G41100.7 31.875 160 92 2 23 165 59 218 4.43e-21 87.8
Msa1111870 AT2G41100.7 32.692 104 67 1 10 113 136 236 7.24e-12 62.4
Msa1111870 AT2G41100.6 31.875 160 92 2 23 165 59 218 4.43e-21 87.8
Msa1111870 AT2G41100.6 32.692 104 67 1 10 113 136 236 7.24e-12 62.4
Msa1111870 AT2G41100.3 31.875 160 92 2 23 165 59 218 4.43e-21 87.8
Msa1111870 AT2G41100.3 32.692 104 67 1 10 113 136 236 7.24e-12 62.4
Msa1111870 AT1G05990.1 35.664 143 89 2 30 169 5 147 4.93e-21 84.3
Msa1111870 AT2G41090.1 32.639 144 94 1 21 164 3 143 5.64e-21 85.5
Msa1111870 AT2G41100.4 31.875 160 92 2 23 165 94 253 5.88e-21 87.8
Msa1111870 AT2G41100.4 30.380 158 94 2 23 164 5 162 5.34e-19 82.4
Msa1111870 AT2G41100.4 32.692 104 67 1 10 113 171 271 8.27e-12 62.4
Msa1111870 AT2G41100.1 31.875 160 92 2 23 165 94 253 5.88e-21 87.8
Msa1111870 AT2G41100.1 30.380 158 94 2 23 164 5 162 5.34e-19 82.4
Msa1111870 AT2G41100.1 32.692 104 67 1 10 113 171 271 8.27e-12 62.4
Msa1111870 AT5G19360.1 35.915 142 89 2 23 164 366 505 1.40e-20 88.2
Msa1111870 AT3G25600.1 32.609 138 91 1 29 164 11 148 3.10e-20 82.8
Msa1111870 AT1G18530.1 33.333 141 91 2 26 164 4 143 3.17e-20 82.4
Msa1111870 AT5G12180.1 35.211 142 90 2 23 164 371 510 5.36e-20 86.7
Msa1111870 AT1G12310.1 30.822 146 99 1 19 164 2 145 6.06e-20 81.6
Msa1111870 AT1G32250.1 30.065 153 101 1 23 169 9 161 1.62e-19 80.9
Msa1111870 AT4G09570.1 34.507 142 90 2 23 164 323 461 1.95e-19 84.7
Msa1111870 AT1G18210.2 33.088 136 87 1 29 164 22 153 3.21e-19 80.1
Msa1111870 AT1G18210.2 39.130 69 42 0 24 92 86 154 5.49e-11 58.5
Msa1111870 AT1G18210.1 33.088 136 87 1 29 164 22 153 3.21e-19 80.1
Msa1111870 AT1G18210.1 39.130 69 42 0 24 92 86 154 5.49e-11 58.5
Msa1111870 AT1G62820.1 30.345 145 99 1 20 164 3 145 4.52e-19 79.3
Msa1111870 AT1G66400.1 33.099 142 93 1 29 168 14 155 5.89e-19 79.3
Msa1111870 AT2G36180.1 38.028 142 85 2 33 171 3 144 6.15e-19 79.0
Msa1111870 AT1G35670.1 33.803 142 91 2 23 164 324 462 7.38e-19 83.2
Msa1111870 AT2G15680.1 31.361 169 107 2 5 166 18 184 2.39e-18 78.6
Msa1111870 AT5G37770.1 32.867 143 92 1 30 168 17 159 2.93e-18 77.4
Msa1111870 AT5G37770.2 32.867 143 92 1 30 168 17 159 2.93e-18 77.4
Msa1111870 AT3G59440.1 30.556 144 97 2 30 171 51 193 5.03e-18 77.8
Msa1111870 AT3G20410.2 35.714 140 84 3 29 166 395 530 6.66e-18 80.5
Msa1111870 AT3G20410.1 35.714 140 84 3 29 166 395 530 6.66e-18 80.5
Msa1111870 AT1G73630.1 28.947 152 104 1 15 166 5 152 9.34e-18 76.3
Msa1111870 AT2G17290.1 33.099 142 92 2 23 164 383 521 1.25e-17 79.7
Msa1111870 AT2G17290.2 33.099 142 92 2 23 164 383 521 1.25e-17 79.7
Msa1111870 AT4G04720.2 33.333 144 94 2 23 166 377 518 2.23e-17 79.0
Msa1111870 AT4G04720.1 33.333 144 94 2 23 166 377 518 2.23e-17 79.0
Msa1111870 AT1G76040.2 36.552 145 86 4 22 164 408 548 2.52e-17 79.0
Msa1111870 AT1G76040.1 36.552 145 86 4 22 164 170 310 2.54e-17 77.8
Msa1111870 AT1G76040.4 36.552 145 86 4 22 164 170 310 2.54e-17 77.8
Msa1111870 AT2G38910.1 31.293 147 98 2 23 169 432 575 2.65e-17 79.0
Msa1111870 AT4G38230.4 32.394 142 93 2 23 164 322 460 3.93e-17 78.2
Msa1111870 AT4G38230.3 32.394 142 93 2 23 164 322 460 3.93e-17 78.2
Msa1111870 AT1G61950.1 33.333 153 96 3 21 171 395 543 4.22e-17 78.2
Msa1111870 AT4G38230.2 32.394 142 93 2 23 164 352 490 4.24e-17 78.2
Msa1111870 AT4G38230.1 32.394 142 93 2 23 164 178 316 4.52e-17 77.4
Msa1111870 AT4G35310.2 32.394 142 93 2 23 164 395 533 7.76e-17 77.4
Msa1111870 AT4G35310.1 32.394 142 93 2 23 164 395 533 7.76e-17 77.4
Msa1111870 AT4G21940.1 33.562 146 91 3 23 166 399 540 7.90e-17 77.4
Msa1111870 AT4G21940.2 33.562 146 91 3 23 166 399 540 8.48e-17 77.4
Msa1111870 AT1G50700.1 34.286 140 86 3 29 166 377 512 1.35e-16 76.6
Msa1111870 AT4G04710.2 34.965 143 89 3 23 164 330 469 1.45e-16 76.6
Msa1111870 AT4G04710.1 34.965 143 89 3 23 164 343 482 2.01e-16 76.3
Msa1111870 AT4G04710.3 34.965 143 89 3 23 164 316 455 2.14e-16 76.3
Msa1111870 AT5G04870.1 31.690 142 94 2 23 164 448 586 2.24e-16 76.3
Msa1111870 AT3G10660.2 30.986 142 95 2 23 164 484 622 7.26e-16 74.7
Msa1111870 AT3G10660.1 30.986 142 95 2 23 164 484 622 7.26e-16 74.7
Msa1111870 AT4G12860.1 30.556 144 98 1 28 169 3 146 8.63e-16 70.9
Msa1111870 AT4G23650.1 30.986 142 96 2 23 164 376 515 1.40e-15 73.9
Msa1111870 AT4G03290.1 30.714 140 92 2 30 164 5 144 2.17e-15 69.7
Msa1111870 AT4G04740.4 32.192 146 93 3 23 166 366 507 2.18e-15 73.2
Msa1111870 AT4G04740.6 32.192 146 93 3 23 166 366 507 2.18e-15 73.2
Msa1111870 AT4G04740.5 32.192 146 93 3 23 166 366 507 2.18e-15 73.2
Msa1111870 AT4G04740.3 32.192 146 93 3 23 166 366 507 2.18e-15 73.2
Msa1111870 AT4G04740.1 32.192 146 93 3 23 166 366 507 2.18e-15 73.2
Msa1111870 AT4G04740.7 32.192 146 93 3 23 166 366 507 2.18e-15 73.2
Msa1111870 AT4G04710.4 35.172 145 88 4 23 164 343 484 2.35e-15 73.2
Msa1111870 AT3G07490.1 30.986 142 96 1 30 169 5 146 2.41e-15 69.7
Msa1111870 AT4G04700.1 32.414 145 96 2 22 166 328 470 4.14e-15 72.4
Msa1111870 AT5G42380.1 28.676 136 96 1 30 164 49 184 9.31e-15 68.9
Msa1111870 AT5G17470.1 35.507 138 87 2 31 166 3 140 1.03e-14 67.8
Msa1111870 AT4G04695.1 31.034 145 98 2 22 166 328 470 2.65e-14 70.1
Msa1111870 AT3G03000.1 27.027 148 107 1 23 169 13 160 1.29e-13 65.5
Msa1111870 AT3G50770.1 28.824 170 114 3 2 166 38 205 2.35e-13 65.5
Msa1111870 AT1G74740.1 28.477 151 104 4 22 170 356 504 3.22e-13 67.0
Msa1111870 AT3G57530.1 29.412 153 99 6 22 170 360 507 4.95e-13 66.6
Msa1111870 AT3G51850.1 30.201 149 102 2 23 170 352 499 6.64e-13 66.2
Msa1111870 AT5G12480.1 27.815 151 106 3 22 170 356 505 9.67e-13 65.5
Msa1111870 AT5G12480.2 27.815 151 106 3 22 170 262 411 1.11e-12 65.5
Msa1111870 AT3G10190.1 31.884 138 91 3 30 165 70 206 2.39e-12 62.8
Msa1111870 AT1G50700.2 28.916 166 86 4 29 166 377 538 2.42e-12 64.3
Msa1111870 AT2G41100.2 29.134 127 73 2 55 164 1 127 2.47e-12 62.8
Msa1111870 AT2G41100.2 32.692 104 67 1 10 113 46 146 3.00e-12 62.4
Msa1111870 AT2G41100.5 35.165 91 56 1 23 113 5 92 2.77e-12 61.6
Msa1111870 AT4G04740.2 31.298 131 84 3 23 151 366 492 4.97e-12 63.5
Msa1111870 AT2G41410.1 31.159 138 92 3 30 164 70 207 5.20e-12 62.0
Msa1111870 AT3G03400.1 31.452 124 83 1 31 152 6 129 6.24e-12 60.5
Msa1111870 AT1G76640.1 27.083 144 103 1 23 164 15 158 7.87e-12 60.5
Msa1111870 AT2G41860.2 28.289 152 103 4 22 170 351 499 1.34e-11 62.4
Msa1111870 AT2G41860.1 28.289 152 103 4 22 170 351 499 1.37e-11 62.4
Msa1111870 AT1G18890.1 29.605 152 101 5 22 170 360 508 1.98e-11 61.6

Find 60 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATTCACGATTTGGAAAT+TGG 0.146463 7_3:-57646137 None:intergenic
TTGTTTGTTGTTGAATCTTC+TGG 0.148468 7_3:-57646354 None:intergenic
AGTGTCTCTTTCTCCTATTT+TGG 0.237506 7_3:-57647226 None:intergenic
TTACAACTTACAAGTATAAA+TGG 0.298475 7_3:-57649442 None:intergenic
CAGTCATCTTCTATACTTAG+AGG 0.308294 7_3:+57646326 Msa1111870:intron
ATTGATGTATGTCTGAATTT+AGG 0.322662 7_3:+57649296 Msa1111870:three_prime_UTR
TTTGTGGAAACTTACTATTT+TGG 0.351393 7_3:-57647467 None:intergenic
CTACTGTTCCCAGTTGCATT+TGG 0.359674 7_3:-57649332 None:intergenic
TGTGTTATTGTGCAAATTGT+AGG 0.363040 7_3:+57649203 Msa1111870:three_prime_UTR
TGGCTTGATTACATATATAT+TGG 0.369271 7_3:+57649167 Msa1111870:three_prime_UTR
TAGGGCAGCAATTCACGATT+TGG 0.370079 7_3:-57646144 None:intergenic
TCTTATCTTTGTAGGGCCCT+TGG 0.375272 7_3:+57646652 Msa1111870:intron
CACATGATGACGGCCAAAAT+AGG 0.383388 7_3:+57647213 Msa1111870:CDS
CATAAGTGTGTTACTTGCTC+TGG 0.399184 7_3:-57649525 None:intergenic
CTGTTTGGACCAAATGCAAC+TGG 0.409973 7_3:+57649323 Msa1111870:three_prime_UTR
CTGAATTTAGGTGTTCTGTT+TGG 0.413498 7_3:+57649308 Msa1111870:three_prime_UTR
TGTAACAACTTAATGCTTGT+CGG 0.416612 7_3:+57649460 Msa1111870:three_prime_UTR
CTACATCGAGTAGTTAGCTT+TGG 0.418501 7_3:+57649143 Msa1111870:three_prime_UTR
CTGGAATGGTTGTCGGAGTT+GGG 0.423966 7_3:-57649506 None:intergenic
GATCGTACCATTGTGGAACT+AGG 0.432318 7_3:-57646163 None:intergenic
ATCGAGTAGTTAGCTTTGGC+TGG 0.442867 7_3:+57649147 Msa1111870:three_prime_UTR
ATTCAATAACAACTTGTGAT+AGG 0.443710 7_3:+57649483 Msa1111870:three_prime_UTR
TGTATCTTATCTCCGATCAT+AGG 0.444892 7_3:+57649406 Msa1111870:three_prime_UTR
TCTGGAATGGTTGTCGGAGT+TGG 0.454925 7_3:-57649507 None:intergenic
ATCATCATGATGAACTCCTC+TGG 0.458576 7_3:-57649089 None:intergenic
AAATGATAGCAGATGTCGAC+AGG 0.463318 7_3:+57647154 Msa1111870:CDS
ACTTGCTCTGGAATGGTTGT+CGG 0.466816 7_3:-57649513 None:intergenic
ATCATGATGATGAACACAAC+AGG 0.494636 7_3:+57649101 Msa1111870:CDS
TTATTCGACACTGATGGCTC+AGG 0.496240 7_3:+57646434 Msa1111870:CDS
TGTATTGTAGGGTAAGATAT+CGG 0.507847 7_3:+57647362 Msa1111870:intron
CATAGCAACATTAAGCTCCT+TGG 0.513823 7_3:-57646553 None:intergenic
GTAGCACAAAACTTAGATGT+TGG 0.514578 7_3:-57646067 None:intergenic
TTTAGGTACTATTGATGCCA+AGG 0.521565 7_3:+57646536 Msa1111870:intron
TGATAGAGAGATTCAGGAGA+TGG 0.522125 7_3:+57647431 Msa1111870:CDS
GTGTGTTACTTGCTCTGGAA+TGG 0.524313 7_3:-57649520 None:intergenic
CTTCATTCATCTCAAATCCA+AGG 0.527872 7_3:-57646669 None:intergenic
TTTGAATTATTCGACACTGA+TGG 0.531996 7_3:+57646428 Msa1111870:CDS
TAGCAGATGTCGACAGGGAT+GGG 0.548013 7_3:+57647160 Msa1111870:CDS
TATTTATTTGACAAAATCGA+AGG 0.553316 7_3:+57646090 Msa1111870:five_prime_UTR
GACAATGTTTCTCCTATGAT+CGG 0.565286 7_3:-57649418 None:intergenic
ATCGTACCATTGTGGAACTA+GGG 0.567201 7_3:-57646162 None:intergenic
AAGCGGATTGCAAAAGAGCT+AGG 0.569005 7_3:+57647396 Msa1111870:CDS
AGGAGAAAGAGACACTAAAG+AGG 0.570607 7_3:+57647233 Msa1111870:CDS
ATAGCAGATGTCGACAGGGA+TGG 0.573080 7_3:+57647159 Msa1111870:CDS
GATGTCGACAGGGATGGGAG+TGG 0.578755 7_3:+57647165 Msa1111870:CDS
TTCATTCATCTCAAATCCAA+GGG 0.585768 7_3:-57646668 None:intergenic
TGATCGAGAGGTTGATCCAG+AGG 0.590124 7_3:+57649073 Msa1111870:CDS
TGTTTGGACCAAATGCAACT+GGG 0.605766 7_3:+57649324 Msa1111870:three_prime_UTR
TGGATTTGAGATGAATGAAG+AGG 0.613258 7_3:+57646672 Msa1111870:CDS
AGGAGCTTAATGTTGCTATG+AGG 0.614526 7_3:+57646556 Msa1111870:CDS
GTAGGGTAAGATATCGGCAT+CGG 0.618796 7_3:+57647368 Msa1111870:intron
GCAGAGAGATCGTACCATTG+TGG 0.624689 7_3:-57646170 None:intergenic
AGATTCAACAACAAACAAAG+AGG 0.630713 7_3:+57646359 Msa1111870:CDS
AGACATACATCAATGCTCAC+AGG 0.630972 7_3:-57649287 None:intergenic
ATAATATGCAGATGATCGAG+AGG 0.639575 7_3:+57649061 Msa1111870:intron
GATGTAGATATGACTAGTGA+CGG 0.656087 7_3:-57649127 None:intergenic
TGAATTTGAGCACATGATGA+CGG 0.665935 7_3:+57647203 Msa1111870:CDS
TATCGGCATCGGATATCAAG+CGG 0.676928 7_3:+57647379 Msa1111870:CDS
TTGCTGCCCTAGTTCCACAA+TGG 0.686939 7_3:+57646156 Msa1111870:exon
AATGATAGCAGATGTCGACA+GGG 0.695960 7_3:+57647155 Msa1111870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATGTTTTCATAATAAT+TGG + chr7_3:57646600-57646619 Msa1111870:intron 10.0%
!!! AAAATGTTTTCATAATAATT+GGG + chr7_3:57646601-57646620 Msa1111870:intron 10.0%
!!! AAACTAATATATTTTAACAA+TGG - chr7_3:57648088-57648107 None:intergenic 10.0%
!!! TTTTTCAATAAATGTTTTAT+GGG - chr7_3:57648857-57648876 None:intergenic 10.0%
!!! ATTTTTCAATAAATGTTTTA+TGG - chr7_3:57648858-57648877 None:intergenic 10.0%
!! CTAAAAATCATTAATTAGTA+TGG - chr7_3:57646521-57646540 None:intergenic 15.0%
!!! CATACTAATTAATGATTTTT+AGG + chr7_3:57646519-57646538 Msa1111870:intron 15.0%
!! ATAAGAAATAATAGTATCAT+TGG + chr7_3:57647611-57647630 Msa1111870:intron 15.0%
!! TAAAAAGTAAACATAATGAT+TGG + chr7_3:57647827-57647846 Msa1111870:intron 15.0%
!! ATATATATATATAATCCCTA+AGG + chr7_3:57648120-57648139 Msa1111870:intron 15.0%
!!! TTTTAACTTTGTTTTTTATG+GGG - chr7_3:57648397-57648416 None:intergenic 15.0%
!!! CTTTTAACTTTGTTTTTTAT+GGG - chr7_3:57648398-57648417 None:intergenic 15.0%
!! AATAGATTAAAGTATAGAAT+AGG + chr7_3:57648435-57648454 Msa1111870:intron 15.0%
!! TATTTATTTGACAAAATCGA+AGG + chr7_3:57646090-57646109 Msa1111870:five_prime_UTR 20.0%
!! TTAATTAGTATGGTATAAAG+AGG - chr7_3:57646511-57646530 None:intergenic 20.0%
!! ATCTTATTCTTATCTTTGTA+GGG + chr7_3:57646645-57646664 Msa1111870:intron 20.0%
!! GGTAATTAATGTTTATGTTT+GGG + chr7_3:57646746-57646765 Msa1111870:intron 20.0%
!! TCTTATACTAATTTAGAGAT+AGG + chr7_3:57646985-57647004 Msa1111870:intron 20.0%
!! CTTATACTAATTTAGAGATA+GGG + chr7_3:57646986-57647005 Msa1111870:intron 20.0%
!!! TTTTGTCTTGATCAATAATA+TGG - chr7_3:57647275-57647294 None:intergenic 20.0%
!!! TAAAAATTTTACATCTCACA+TGG + chr7_3:57647518-57647537 Msa1111870:intron 20.0%
!!! TATGATTCATTTTTATTGTC+AGG - chr7_3:57647802-57647821 None:intergenic 20.0%
!!! ATTTTAATTAGAGTACCTTA+AGG + chr7_3:57647916-57647935 Msa1111870:intron 20.0%
!!! CCTTTTAACTTTGTTTTTTA+TGG - chr7_3:57648399-57648418 None:intergenic 20.0%
!! CCATAAAAAACAAAGTTAAA+AGG + chr7_3:57648396-57648415 Msa1111870:intron 20.0%
!! TGGTTTCATAAAAATTCTTA+AGG + chr7_3:57648918-57648937 Msa1111870:intron 20.0%
!! GGTTTCATAAAAATTCTTAA+GGG + chr7_3:57648919-57648938 Msa1111870:intron 20.0%
!! GTTTCATAAAAATTCTTAAG+GGG + chr7_3:57648920-57648939 Msa1111870:intron 20.0%
!! AAATAATATCTCACAAACAT+GGG - chr7_3:57649022-57649041 None:intergenic 20.0%
!! TAAATAATATCTCACAAACA+TGG - chr7_3:57649023-57649042 None:intergenic 20.0%
!! TTACAACTTACAAGTATAAA+TGG - chr7_3:57649445-57649464 None:intergenic 20.0%
!!! CAAGAATATTTTTGACTACA+TGG - chr7_3:57646484-57646503 None:intergenic 25.0%
!! AGGTATTGTTGTTATTCATA+AGG + chr7_3:57646576-57646595 Msa1111870:intron 25.0%
! CATCTTATTCTTATCTTTGT+AGG + chr7_3:57646644-57646663 Msa1111870:intron 25.0%
! CGGTAATTAATGTTTATGTT+TGG + chr7_3:57646745-57646764 Msa1111870:intron 25.0%
! TGATATTTACACAAAAGACT+AGG - chr7_3:57646896-57646915 None:intergenic 25.0%
! AAATGCTACAACAATAAAAG+AGG - chr7_3:57646953-57646972 None:intergenic 25.0%
! AGATTATGTACAATATTGTC+AGG + chr7_3:57647047-57647066 Msa1111870:intron 25.0%
!!! TGATTCTCATTGTATTTTTG+TGG + chr7_3:57647335-57647354 Msa1111870:intron 25.0%
!! TTTGTGGAAACTTACTATTT+TGG - chr7_3:57647470-57647489 None:intergenic 25.0%
! CGTATTTGTATATCATTCTA+CGG + chr7_3:57647541-57647560 Msa1111870:intron 25.0%
! TTATGAACGCTAAACTTAAA+AGG - chr7_3:57648175-57648194 None:intergenic 25.0%
! ACACAAAAATTATAAGTTCC+AGG - chr7_3:57648476-57648495 None:intergenic 25.0%
! ATCAAGGTAGAATAAACAAT+AGG + chr7_3:57648543-57648562 Msa1111870:intron 25.0%
! ATAAACAATAGGATGCTATT+TGG + chr7_3:57648554-57648573 Msa1111870:intron 25.0%
!! TTTTATGGGATATACAATTC+AGG - chr7_3:57648843-57648862 None:intergenic 25.0%
!! TTTGTCAGTTTGAAACTAAA+CGG + chr7_3:57648884-57648903 Msa1111870:intron 25.0%
! TGGCTTGATTACATATATAT+TGG + chr7_3:57649167-57649186 Msa1111870:three_prime_UTR 25.0%
! ATTGATGTATGTCTGAATTT+AGG + chr7_3:57649296-57649315 Msa1111870:three_prime_UTR 25.0%
! ATTCAATAACAACTTGTGAT+AGG + chr7_3:57649483-57649502 Msa1111870:three_prime_UTR 25.0%
AAATGACAGTTCTTGATCAA+GGG - chr7_3:57646288-57646307 None:intergenic 30.0%
!! TTGTTTGTTGTTGAATCTTC+TGG - chr7_3:57646357-57646376 None:intergenic 30.0%
AGATTCAACAACAAACAAAG+AGG + chr7_3:57646359-57646378 Msa1111870:CDS 30.0%
TTTGAATTATTCGACACTGA+TGG + chr7_3:57646428-57646447 Msa1111870:CDS 30.0%
TTCATTCATCTCAAATCCAA+GGG - chr7_3:57646671-57646690 None:intergenic 30.0%
! AGACTAGGAATTATTTTCCT+TGG - chr7_3:57646881-57646900 None:intergenic 30.0%
ATTGTTGTAGCATTTAGCTA+TGG + chr7_3:57646958-57646977 Msa1111870:intron 30.0%
ATTTAGAGATAGGGATTCAA+TGG + chr7_3:57646995-57647014 Msa1111870:intron 30.0%
!! AATTTGCTGAAATGACACAA+TGG - chr7_3:57647130-57647149 None:intergenic 30.0%
TGTATTGTAGGGTAAGATAT+CGG + chr7_3:57647362-57647381 Msa1111870:intron 30.0%
! TTTTACTGATAGAGAGATTC+AGG + chr7_3:57647425-57647444 Msa1111870:CDS 30.0%
CTAAAAAGTTAGAACTAGCA+AGG - chr7_3:57647498-57647517 None:intergenic 30.0%
! TTTTAGTACTCACGTAGTTT+CGG + chr7_3:57647691-57647710 Msa1111870:intron 30.0%
ACATAATTTGAGCTATAGAG+AGG + chr7_3:57647860-57647879 Msa1111870:intron 30.0%
CATAATTTGAGCTATAGAGA+GGG + chr7_3:57647861-57647880 Msa1111870:intron 30.0%
TACCTTAAGGTAATATTTGC+TGG + chr7_3:57647929-57647948 Msa1111870:intron 30.0%
! AACTTACTTTCGGACATTTT+GGG - chr7_3:57647968-57647987 None:intergenic 30.0%
TGTTCCTAACAACTTACTTT+CGG - chr7_3:57647978-57647997 None:intergenic 30.0%
ATTATAAGTTCCAGGTGATA+TGG - chr7_3:57648468-57648487 None:intergenic 30.0%
!! TATAGGCATTTTGGATTAGA+AGG + chr7_3:57648644-57648663 Msa1111870:intron 30.0%
! TTGTCAGTTTGAAACTAAAC+GGG + chr7_3:57648885-57648904 Msa1111870:intron 30.0%
TTCAACACACAAAAAGAGTA+TGG - chr7_3:57648968-57648987 None:intergenic 30.0%
!!! GTTGAATTTTTTCTTGCGTT+AGG + chr7_3:57648982-57649001 Msa1111870:intron 30.0%
!!! ATTTTTTCTTGCGTTAGGAT+TGG + chr7_3:57648987-57649006 Msa1111870:intron 30.0%
! TGTGTTATTGTGCAAATTGT+AGG + chr7_3:57649203-57649222 Msa1111870:three_prime_UTR 30.0%
TGTAACAACTTAATGCTTGT+CGG + chr7_3:57649460-57649479 Msa1111870:three_prime_UTR 30.0%
GTAGCACAAAACTTAGATGT+TGG - chr7_3:57646070-57646089 None:intergenic 35.0%
! GCAATTCACGATTTGGAAAT+TGG - chr7_3:57646140-57646159 None:intergenic 35.0%
CAAATGACAGTTCTTGATCA+AGG - chr7_3:57646289-57646308 None:intergenic 35.0%
CAGTCATCTTCTATACTTAG+AGG + chr7_3:57646326-57646345 Msa1111870:intron 35.0%
GACTACATGGTTATTGTTGA+TGG - chr7_3:57646471-57646490 None:intergenic 35.0%
TTTAGGTACTATTGATGCCA+AGG + chr7_3:57646536-57646555 Msa1111870:intron 35.0%
CTTCATTCATCTCAAATCCA+AGG - chr7_3:57646672-57646691 None:intergenic 35.0%
! TGGATTTGAGATGAATGAAG+AGG + chr7_3:57646672-57646691 Msa1111870:CDS 35.0%
CAACGAGTGGTTATAAAAAG+GGG - chr7_3:57646710-57646729 None:intergenic 35.0%
GCAACGAGTGGTTATAAAAA+GGG - chr7_3:57646711-57646730 None:intergenic 35.0%
TGCAACGAGTGGTTATAAAA+AGG - chr7_3:57646712-57646731 None:intergenic 35.0%
ACAACATAATATGCAACGAG+TGG - chr7_3:57646723-57646742 None:intergenic 35.0%
! GGAATTATTTTCCTTGGCAA+CGG - chr7_3:57646875-57646894 None:intergenic 35.0%
!! AAAGAGGTATCACAGAGAAA+GGG - chr7_3:57646937-57646956 None:intergenic 35.0%
!! AAAAGAGGTATCACAGAGAA+AGG - chr7_3:57646938-57646957 None:intergenic 35.0%
TGAATTTGAGCACATGATGA+CGG + chr7_3:57647203-57647222 Msa1111870:CDS 35.0%
! AGTGTCTCTTTCTCCTATTT+TGG - chr7_3:57647229-57647248 None:intergenic 35.0%
! TTTTGTGGTCACTGTATTGT+AGG + chr7_3:57647350-57647369 Msa1111870:intron 35.0%
TTTGTGGTCACTGTATTGTA+GGG + chr7_3:57647351-57647370 Msa1111870:intron 35.0%
AACTAGCAAGGATATGTTTG+TGG - chr7_3:57647486-57647505 None:intergenic 35.0%
! ATTGAAAGTATAGTGCGCAT+TGG + chr7_3:57647662-57647681 Msa1111870:intron 35.0%
! TTGAAAGTATAGTGCGCATT+GGG + chr7_3:57647663-57647682 Msa1111870:intron 35.0%
GACATTCATGTAAACATCGA+AGG + chr7_3:57647752-57647771 Msa1111870:intron 35.0%
TAGAGAGGGAATCTGATATA+TGG + chr7_3:57647875-57647894 Msa1111870:intron 35.0%
TGATATATGGTTGCATTGCA+TGG + chr7_3:57647888-57647907 Msa1111870:intron 35.0%
CACCAGCAAATATTACCTTA+AGG - chr7_3:57647934-57647953 None:intergenic 35.0%
! CTTAAGGTAATATTTGCTGG+TGG + chr7_3:57647932-57647951 Msa1111870:intron 35.0%
! CAACTTACTTTCGGACATTT+TGG - chr7_3:57647969-57647988 None:intergenic 35.0%
ATGTCCGAAAGTAAGTTGTT+AGG + chr7_3:57647971-57647990 Msa1111870:intron 35.0%
! TACTACTGTAACTTGCAAGA+TGG - chr7_3:57648062-57648081 None:intergenic 35.0%
GAGTTACTACATCAACCTTA+GGG - chr7_3:57648138-57648157 None:intergenic 35.0%
TGAGTTACTACATCAACCTT+AGG - chr7_3:57648139-57648158 None:intergenic 35.0%
! ACAATAGGATGCTATTTGGT+CGG + chr7_3:57648558-57648577 Msa1111870:intron 35.0%
GTCAGTTACAATGGCAATTT+GGG + chr7_3:57648587-57648606 Msa1111870:intron 35.0%
! GCACATTTGTATAGGCATTT+TGG + chr7_3:57648635-57648654 Msa1111870:intron 35.0%
CATAACAAGTAGTACAAGCA+GGG - chr7_3:57648782-57648801 None:intergenic 35.0%
ACATAACAAGTAGTACAAGC+AGG - chr7_3:57648783-57648802 None:intergenic 35.0%
CTGGTTCCTATGATTACAAT+AGG + chr7_3:57648815-57648834 Msa1111870:intron 35.0%
CAGGAACCTATTGTAATCAT+AGG - chr7_3:57648824-57648843 None:intergenic 35.0%
! TGTCAGTTTGAAACTAAACG+GGG + chr7_3:57648886-57648905 Msa1111870:intron 35.0%
ATAATATGCAGATGATCGAG+AGG + chr7_3:57649061-57649080 Msa1111870:intron 35.0%
! ATCATGATGATGAACACAAC+AGG + chr7_3:57649101-57649120 Msa1111870:CDS 35.0%
GATGTAGATATGACTAGTGA+CGG - chr7_3:57649130-57649149 None:intergenic 35.0%
CTGAATTTAGGTGTTCTGTT+TGG + chr7_3:57649308-57649327 Msa1111870:three_prime_UTR 35.0%
TGTATCTTATCTCCGATCAT+AGG + chr7_3:57649406-57649425 Msa1111870:three_prime_UTR 35.0%
GACAATGTTTCTCCTATGAT+CGG - chr7_3:57649421-57649440 None:intergenic 35.0%
ATCGTACCATTGTGGAACTA+GGG - chr7_3:57646165-57646184 None:intergenic 40.0%
CATAGCAACATTAAGCTCCT+TGG - chr7_3:57646556-57646575 None:intergenic 40.0%
AGGAGCTTAATGTTGCTATG+AGG + chr7_3:57646556-57646575 Msa1111870:CDS 40.0%
TTATAAAAAGGGGCAGAAGG+GGG - chr7_3:57646700-57646719 None:intergenic 40.0%
GTTATAAAAAGGGGCAGAAG+GGG - chr7_3:57646701-57646720 None:intergenic 40.0%
GGTTATAAAAAGGGGCAGAA+GGG - chr7_3:57646702-57646721 None:intergenic 40.0%
TGGTTATAAAAAGGGGCAGA+AGG - chr7_3:57646703-57646722 None:intergenic 40.0%
CGTTGCATATTATGTTGTCG+CGG + chr7_3:57646725-57646744 Msa1111870:intron 40.0%
GTATCACAGAGAAAGGGAAT+TGG - chr7_3:57646931-57646950 None:intergenic 40.0%
AAATGATAGCAGATGTCGAC+AGG + chr7_3:57647154-57647173 Msa1111870:CDS 40.0%
AATGATAGCAGATGTCGACA+GGG + chr7_3:57647155-57647174 Msa1111870:CDS 40.0%
AGGAGAAAGAGACACTAAAG+AGG + chr7_3:57647233-57647252 Msa1111870:CDS 40.0%
TGATAGAGAGATTCAGGAGA+TGG + chr7_3:57647431-57647450 Msa1111870:CDS 40.0%
TATATCATTCTACGGTGAGC+TGG + chr7_3:57647549-57647568 Msa1111870:intron 40.0%
ATATCATTCTACGGTGAGCT+GGG + chr7_3:57647550-57647569 Msa1111870:intron 40.0%
! GGTGGAGATATGTGTGTTTT+AGG + chr7_3:57647571-57647590 Msa1111870:intron 40.0%
TTAGCGTTCATAACCCACTT+CGG + chr7_3:57648182-57648201 Msa1111870:intron 40.0%
CTAAACTAACCCACCCAAAT+TGG - chr7_3:57648282-57648301 None:intergenic 40.0%
GAAGGATATGTTCTGCCATA+TGG + chr7_3:57648333-57648352 Msa1111870:intron 40.0%
TATGTTCTGCCATATGGTAG+CGG + chr7_3:57648339-57648358 Msa1111870:intron 40.0%
TACAATTTCACACGATGCGT+AGG + chr7_3:57648495-57648514 Msa1111870:intron 40.0%
TGCGATTTAGCTGGAAATCA+AGG + chr7_3:57648527-57648546 Msa1111870:intron 40.0%
GGTCAGTTACAATGGCAATT+TGG + chr7_3:57648586-57648605 Msa1111870:intron 40.0%
AATGGCAATTTGGGAGTTAG+AGG + chr7_3:57648596-57648615 Msa1111870:intron 40.0%
GGAGTTAGAGGTTAATTAGC+AGG + chr7_3:57648608-57648627 Msa1111870:intron 40.0%
CAGGTTCTGCACATTTGTAT+AGG + chr7_3:57648627-57648646 Msa1111870:intron 40.0%
! TCTCTTAGTTGTGACTTGTG+AGG + chr7_3:57648678-57648697 Msa1111870:intron 40.0%
! CTCTTAGTTGTGACTTGTGA+GGG + chr7_3:57648679-57648698 Msa1111870:intron 40.0%
! TCTTAGTTGTGACTTGTGAG+GGG + chr7_3:57648680-57648699 Msa1111870:intron 40.0%
CCTGCAATGGAGAGAAAATA+AGG - chr7_3:57648721-57648740 None:intergenic 40.0%
!!! CCTTATTTTCTCTCCATTGC+AGG + chr7_3:57648718-57648737 Msa1111870:intron 40.0%
GAACACTGTTATTCCTGCAA+TGG - chr7_3:57648734-57648753 None:intergenic 40.0%
! TACAAGCAGGGAAAGTGTAT+GGG - chr7_3:57648770-57648789 None:intergenic 40.0%
!! GTACTACTTGTTATGTCCTG+TGG + chr7_3:57648787-57648806 Msa1111870:intron 40.0%
! GTTATGTCCTGTGGTTTTTC+TGG + chr7_3:57648796-57648815 Msa1111870:intron 40.0%
ATAGGAACCAGAAAAACCAC+AGG - chr7_3:57648806-57648825 None:intergenic 40.0%
! GTCAGTTTGAAACTAAACGG+GGG + chr7_3:57648887-57648906 Msa1111870:intron 40.0%
! TCAGTTTGAAACTAAACGGG+GGG + chr7_3:57648888-57648907 Msa1111870:intron 40.0%
ATCATCATGATGAACTCCTC+TGG - chr7_3:57649092-57649111 None:intergenic 40.0%
! CTACATCGAGTAGTTAGCTT+TGG + chr7_3:57649143-57649162 Msa1111870:three_prime_UTR 40.0%
AGACATACATCAATGCTCAC+AGG - chr7_3:57649290-57649309 None:intergenic 40.0%
TGTTTGGACCAAATGCAACT+GGG + chr7_3:57649324-57649343 Msa1111870:three_prime_UTR 40.0%
!! CATAAGTGTGTTACTTGCTC+TGG - chr7_3:57649528-57649547 None:intergenic 40.0%
TAGGGCAGCAATTCACGATT+TGG - chr7_3:57646147-57646166 None:intergenic 45.0%
GATCGTACCATTGTGGAACT+AGG - chr7_3:57646166-57646185 None:intergenic 45.0%
TTATTCGACACTGATGGCTC+AGG + chr7_3:57646434-57646453 Msa1111870:CDS 45.0%
TCTTATCTTTGTAGGGCCCT+TGG + chr7_3:57646652-57646671 Msa1111870:intron 45.0%
! TTTTCCTTGGCAACGGTCAA+TGG - chr7_3:57646868-57646887 None:intergenic 45.0%
!! CACATGATGACGGCCAAAAT+AGG + chr7_3:57647213-57647232 Msa1111870:CDS 45.0%
GTAGGGTAAGATATCGGCAT+CGG + chr7_3:57647368-57647387 Msa1111870:intron 45.0%
! TATCGGCATCGGATATCAAG+CGG + chr7_3:57647379-57647398 Msa1111870:CDS 45.0%
!! AAGCGGATTGCAAAAGAGCT+AGG + chr7_3:57647396-57647415 Msa1111870:CDS 45.0%
! CTGTAACTTGCAAGATGGAG+TGG - chr7_3:57648057-57648076 None:intergenic 45.0%
GAATCGAACATGTGACCTAG+AGG - chr7_3:57648250-57648269 None:intergenic 45.0%
! ATTCTCCCTGGTGCCAATTT+GGG + chr7_3:57648266-57648285 Msa1111870:intron 45.0%
AAGTTTAGCGTTCCTGCTGA+AGG + chr7_3:57648315-57648334 Msa1111870:intron 45.0%
ATGTTCTGCCATATGGTAGC+GGG + chr7_3:57648340-57648359 Msa1111870:intron 45.0%
ACTTGGACATGCGATTTAGC+TGG + chr7_3:57648518-57648537 Msa1111870:intron 45.0%
! GATGCTATTTGGTCGGTCAA+AGG + chr7_3:57648565-57648584 Msa1111870:intron 45.0%
CGGTCAAAGGTCAGTTACAA+TGG + chr7_3:57648578-57648597 Msa1111870:intron 45.0%
! ACAAGCAGGGAAAGTGTATG+GGG - chr7_3:57648769-57648788 None:intergenic 45.0%
! GTACAAGCAGGGAAAGTGTA+TGG - chr7_3:57648771-57648790 None:intergenic 45.0%
!! ATCGAGTAGTTAGCTTTGGC+TGG + chr7_3:57649147-57649166 Msa1111870:three_prime_UTR 45.0%
CTGTTTGGACCAAATGCAAC+TGG + chr7_3:57649323-57649342 Msa1111870:three_prime_UTR 45.0%
CTACTGTTCCCAGTTGCATT+TGG - chr7_3:57649335-57649354 None:intergenic 45.0%
!! ACTTGCTCTGGAATGGTTGT+CGG - chr7_3:57649516-57649535 None:intergenic 45.0%
!! GTGTGTTACTTGCTCTGGAA+TGG - chr7_3:57649523-57649542 None:intergenic 45.0%
TTGCTGCCCTAGTTCCACAA+TGG + chr7_3:57646156-57646175 Msa1111870:exon 50.0%
GCAGAGAGATCGTACCATTG+TGG - chr7_3:57646173-57646192 None:intergenic 50.0%
TCATCCATTGACCGTTGCCA+AGG + chr7_3:57646861-57646880 Msa1111870:intron 50.0%
ATAGCAGATGTCGACAGGGA+TGG + chr7_3:57647159-57647178 Msa1111870:CDS 50.0%
TAGCAGATGTCGACAGGGAT+GGG + chr7_3:57647160-57647179 Msa1111870:CDS 50.0%
CGTTCATAACCCACTTCGGT+TGG + chr7_3:57648186-57648205 Msa1111870:intron 50.0%
TCGAACATGTGACCTAGAGG+AGG - chr7_3:57648247-57648266 None:intergenic 50.0%
GTCACATGTTCGATTCTCCC+TGG + chr7_3:57648254-57648273 Msa1111870:intron 50.0%
! GATTCTCCCTGGTGCCAATT+TGG + chr7_3:57648265-57648284 Msa1111870:intron 50.0%
GGCAGAACATATCCTTCAGC+AGG - chr7_3:57648330-57648349 None:intergenic 50.0%
! TGTTCTGCCATATGGTAGCG+GGG + chr7_3:57648341-57648360 Msa1111870:intron 50.0%
AGGTTCACAGCCATATCACC+TGG + chr7_3:57648455-57648474 Msa1111870:intron 50.0%
TTCACACGATGCGTAGGACT+TGG + chr7_3:57648501-57648520 Msa1111870:intron 50.0%
! TGTGACTTGTGAGGGGAAAC+TGG + chr7_3:57648687-57648706 Msa1111870:intron 50.0%
! CAAGCAGGGAAAGTGTATGG+GGG - chr7_3:57648768-57648787 None:intergenic 50.0%
ACTAAACGGGGGGTTTGCAT+TGG + chr7_3:57648898-57648917 Msa1111870:intron 50.0%
! TGATCGAGAGGTTGATCCAG+AGG + chr7_3:57649073-57649092 Msa1111870:CDS 50.0%
CTGGAATGGTTGTCGGAGTT+GGG - chr7_3:57649509-57649528 None:intergenic 50.0%
! TCTGGAATGGTTGTCGGAGT+TGG - chr7_3:57649510-57649529 None:intergenic 50.0%
TCATTCTACGGTGAGCTGGG+TGG + chr7_3:57647553-57647572 Msa1111870:intron 55.0%
ACCATCAGGCCAACCGAAGT+GGG - chr7_3:57648198-57648217 None:intergenic 55.0%
!! TTCGGTTGGCCTGATGGTGT+TGG + chr7_3:57648200-57648219 Msa1111870:intron 55.0%
!! TTGGCCTGATGGTGTTGGCT+TGG + chr7_3:57648205-57648224 Msa1111870:intron 55.0%
!! TGGCCTGATGGTGTTGGCTT+GGG + chr7_3:57648206-57648225 Msa1111870:intron 55.0%
GATCCCAAGCCAACACCATC+AGG - chr7_3:57648212-57648231 None:intergenic 55.0%
! CTAGAGGAGGAGCACACTCT+AGG - chr7_3:57648234-57648253 None:intergenic 55.0%
CTAGAGTGTGCTCCTCCTCT+AGG + chr7_3:57648232-57648251 Msa1111870:intron 55.0%
! TCCCTGGTGCCAATTTGGGT+GGG + chr7_3:57648270-57648289 Msa1111870:intron 55.0%
ACCCACCCAAATTGGCACCA+GGG - chr7_3:57648274-57648293 None:intergenic 55.0%
AACCCACCCAAATTGGCACC+AGG - chr7_3:57648275-57648294 None:intergenic 55.0%
AGTCCTTCCCCGCTACCATA+TGG - chr7_3:57648351-57648370 None:intergenic 55.0%
GATGTCGACAGGGATGGGAG+TGG + chr7_3:57647165-57647184 Msa1111870:CDS 60.0%
!! ACCCACTTCGGTTGGCCTGA+TGG + chr7_3:57648194-57648213 Msa1111870:intron 60.0%
CACCATCAGGCCAACCGAAG+TGG - chr7_3:57648199-57648218 None:intergenic 60.0%
! CTCCCTGGTGCCAATTTGGG+TGG + chr7_3:57648269-57648288 Msa1111870:intron 60.0%
!! CTGCCATATGGTAGCGGGGA+AGG + chr7_3:57648345-57648364 Msa1111870:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 57646061 57649555 57646061 ID=Msa1111870;Name=Msa1111870
chr7_3 mRNA 57646061 57649555 57646061 ID=Msa1111870-mRNA-1;Parent=Msa1111870;Name=Msa1111870-mRNA-1;_AED=0.16;_eAED=0.16;_QI=114|1|1|1|1|1|7|419|171
chr7_3 exon 57646061 57646177 57646061 ID=Msa1111870-mRNA-1:exon:12499;Parent=Msa1111870-mRNA-1
chr7_3 exon 57646329 57646455 57646329 ID=Msa1111870-mRNA-1:exon:12500;Parent=Msa1111870-mRNA-1
chr7_3 exon 57646541 57646577 57646541 ID=Msa1111870-mRNA-1:exon:12501;Parent=Msa1111870-mRNA-1
chr7_3 exon 57646666 57646693 57646666 ID=Msa1111870-mRNA-1:exon:12502;Parent=Msa1111870-mRNA-1
chr7_3 exon 57647144 57647296 57647144 ID=Msa1111870-mRNA-1:exon:12503;Parent=Msa1111870-mRNA-1
chr7_3 exon 57647372 57647474 57647372 ID=Msa1111870-mRNA-1:exon:12504;Parent=Msa1111870-mRNA-1
chr7_3 exon 57649072 57649555 57649072 ID=Msa1111870-mRNA-1:exon:12505;Parent=Msa1111870-mRNA-1
chr7_3 five_prime_UTR 57646061 57646174 57646061 ID=Msa1111870-mRNA-1:five_prime_utr;Parent=Msa1111870-mRNA-1
chr7_3 CDS 57646175 57646177 57646175 ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3 CDS 57646329 57646455 57646329 ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3 CDS 57646541 57646577 57646541 ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3 CDS 57646666 57646693 57646666 ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3 CDS 57647144 57647296 57647144 ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3 CDS 57647372 57647474 57647372 ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3 CDS 57649072 57649136 57649072 ID=Msa1111870-mRNA-1:cds;Parent=Msa1111870-mRNA-1
chr7_3 three_prime_UTR 57649137 57649555 57649137 ID=Msa1111870-mRNA-1:three_prime_utr;Parent=Msa1111870-mRNA-1
Gene Sequence

>Msa1111870

ATGTCATCTTCTATACTTAGAGGAGATTCCAGAAGATTCAACAACAAACAAAGAGGAAAACATCATTTGACGCAACAGAAGAGACAAGAGATTAAAGAAGCTTTTGAATTATTCGACACTGATGGCTCAGGTACTATTGATGCCAAGGAGCTTAATGTTGCTATGAGGGCCCTTGGATTTGAGATGAATGAAGAGCAAATTGAGCAAATGATAGCAGATGTCGACAGGGATGGGAGTGGAGCAATCGACTATGATGAATTTGAGCACATGATGACGGCCAAAATAGGAGAAAGAGACACTAAAGAGGAGCTCATGAAAGCTTTCCATATTATTGATCAAGACAAAAATGGTAAGATATCGGCATCGGATATCAAGCGGATTGCAAAAGAGCTAGGTCAAAATTTTACTGATAGAGAGATTCAGGAGATGGTTGATGAAGCAGACCAAAATAATGATCGAGAGGTTGATCCAGAGGAGTTCATCATGATGATGAACACAACAGGCTACCGTCACTAG
Protein sequence

>Msa1111870

MSSSILRGDSRRFNNKQRGKHHLTQQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMNEEQIEQMIADVDRDGSGAIDYDEFEHMMTAKIGERDTKEELMKAFHIIDQDKNGKISASDIKRIAKELGQNFTDREIQEMVDEADQNNDREVDPEEFIMMMNTTGYRH*