Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032360 | XP_013468984.1 | 93.961 | 414 | 15 | 2 | 1 | 406 | 1 | 412 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032360 | sp|Q99090|CPRF2_PETCR | 54.118 | 425 | 152 | 11 | 1 | 406 | 1 | 401 | 4.36e-119 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032360 | A0A072VN13 | 93.961 | 414 | 15 | 2 | 1 | 406 | 1 | 412 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0032360 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032360 | Msa0172360 | 0.971096 | 1.250861e-132 | -8.615850e-47 |
| Msa0032360 | Msa1390320 | 0.955665 | 1.796978e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032360 | MtrunA17_Chr1g0190761 | 93.961 | 414 | 15 | 2 | 1 | 406 | 1 | 412 | 0.0 | 743 |
| Msa0032360 | MtrunA17_Chr7g0274141 | 54.839 | 403 | 153 | 9 | 1 | 393 | 1 | 384 | 1.30e-121 | 358 |
| Msa0032360 | MtrunA17_Chr3g0139301 | 52.593 | 135 | 57 | 4 | 169 | 299 | 96 | 227 | 1.90e-30 | 118 |
| Msa0032360 | MtrunA17_Chr1g0147491 | 59.504 | 121 | 45 | 2 | 172 | 292 | 143 | 259 | 4.79e-27 | 110 |
| Msa0032360 | MtrunA17_Chr3g0139571 | 59.459 | 74 | 30 | 0 | 201 | 274 | 1 | 74 | 1.55e-17 | 77.0 |
| Msa0032360 | MtrunA17_Chr4g0035414 | 41.304 | 92 | 54 | 0 | 200 | 291 | 28 | 119 | 3.84e-14 | 69.7 |
| Msa0032360 | MtrunA17_Chr7g0225661 | 41.346 | 104 | 55 | 1 | 171 | 274 | 59 | 156 | 7.99e-14 | 69.7 |
| Msa0032360 | MtrunA17_Chr8g0341311 | 45.055 | 91 | 45 | 1 | 184 | 274 | 61 | 146 | 8.13e-14 | 69.3 |
| Msa0032360 | MtrunA17_Chr3g0144941 | 38.043 | 92 | 57 | 0 | 200 | 291 | 28 | 119 | 1.41e-13 | 68.2 |
| Msa0032360 | MtrunA17_Chr6g0456061 | 47.297 | 74 | 39 | 0 | 202 | 275 | 90 | 163 | 2.13e-13 | 68.6 |
| Msa0032360 | MtrunA17_Chr8g0378901 | 31.092 | 119 | 79 | 1 | 173 | 291 | 9 | 124 | 1.83e-12 | 65.1 |
| Msa0032360 | MtrunA17_Chr1g0155551 | 30.000 | 160 | 92 | 4 | 172 | 318 | 7 | 159 | 2.04e-11 | 62.0 |
| Msa0032360 | MtrunA17_Chr8g0373571 | 43.529 | 85 | 46 | 1 | 186 | 270 | 248 | 330 | 2.28e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032360 | AT5G28770.2 | 45.340 | 397 | 129 | 14 | 1 | 394 | 1 | 312 | 2.04e-76 | 240 |
| Msa0032360 | AT5G28770.1 | 44.584 | 397 | 125 | 15 | 1 | 394 | 1 | 305 | 1.04e-71 | 228 |
| Msa0032360 | AT5G28770.3 | 49.275 | 276 | 89 | 9 | 1 | 275 | 1 | 226 | 5.29e-57 | 187 |
| Msa0032360 | AT4G02640.3 | 39.634 | 328 | 145 | 5 | 1 | 291 | 1 | 312 | 3.47e-49 | 172 |
| Msa0032360 | AT4G02640.2 | 39.634 | 328 | 145 | 5 | 1 | 291 | 1 | 312 | 4.04e-49 | 172 |
| Msa0032360 | AT4G02640.4 | 39.634 | 328 | 139 | 5 | 1 | 291 | 1 | 306 | 8.64e-49 | 171 |
| Msa0032360 | AT4G02640.1 | 39.634 | 328 | 139 | 5 | 1 | 291 | 1 | 306 | 1.15e-48 | 171 |
| Msa0032360 | AT3G54620.1 | 38.965 | 367 | 143 | 14 | 1 | 314 | 1 | 339 | 6.67e-44 | 157 |
| Msa0032360 | AT5G24800.1 | 44.444 | 189 | 92 | 5 | 131 | 310 | 51 | 235 | 4.59e-37 | 136 |
| Msa0032360 | AT5G28770.4 | 45.643 | 241 | 72 | 10 | 1 | 236 | 1 | 187 | 3.37e-34 | 127 |
| Msa0032360 | AT3G54620.3 | 37.057 | 367 | 133 | 16 | 1 | 314 | 1 | 322 | 3.48e-29 | 117 |
| Msa0032360 | AT2G18160.1 | 41.758 | 91 | 53 | 0 | 194 | 284 | 23 | 113 | 3.72e-14 | 70.5 |
| Msa0032360 | AT2G04038.1 | 43.617 | 94 | 48 | 1 | 181 | 274 | 58 | 146 | 6.54e-13 | 67.0 |
| Msa0032360 | AT1G75390.1 | 36.522 | 115 | 68 | 1 | 197 | 311 | 36 | 145 | 9.78e-13 | 66.6 |
| Msa0032360 | AT3G30530.1 | 37.864 | 103 | 60 | 1 | 172 | 274 | 55 | 153 | 2.82e-12 | 65.1 |
| Msa0032360 | AT1G13600.1 | 45.333 | 75 | 41 | 0 | 200 | 274 | 84 | 158 | 9.45e-12 | 64.3 |
| Msa0032360 | AT3G62420.1 | 32.692 | 104 | 60 | 1 | 199 | 302 | 22 | 115 | 1.43e-11 | 62.4 |
| Msa0032360 | AT5G15830.1 | 50.000 | 66 | 27 | 1 | 184 | 249 | 62 | 121 | 5.63e-11 | 61.6 |
Find 148 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATGATCCACTTGTTGA+TGG | 0.223100 | 1_1:+59411612 | None:intergenic |
| GCATCTTTATCTTGTAATAT+AGG | 0.256635 | 1_1:+59411699 | None:intergenic |
| CCGCAGAATCAGTGTACTTT+TGG | 0.261444 | 1_1:+59410331 | None:intergenic |
| CCTACAACTGCTGCATTGTT+TGG | 0.276575 | 1_1:+59409398 | None:intergenic |
| AATCAAACAAACTTGTTTCC+TGG | 0.281020 | 1_1:+59408920 | None:intergenic |
| TCCAACTTTAGTAGCATTAG+AGG | 0.290868 | 1_1:+59412053 | None:intergenic |
| TGCACCCCATATCTTCGTTT+GGG | 0.319723 | 1_1:-59409108 | Msa0032360:three_prime_UTR |
| TTGATTCAAACCTTCAGAAA+TGG | 0.321181 | 1_1:+59412023 | None:intergenic |
| AACAAGTTTGTTTGATTTGA+AGG | 0.331713 | 1_1:-59408914 | None:intergenic |
| GCATTCCCCAAACGAAGATA+TGG | 0.348614 | 1_1:+59409102 | None:intergenic |
| TATGCAGGATCTGTTCCTTC+TGG | 0.364918 | 1_1:-59411732 | Msa0032360:intron |
| ACTTATTCCCTCAAAATGTT+TGG | 0.368104 | 1_1:-59409048 | Msa0032360:three_prime_UTR |
| GCAATTTACTGCTCTCCATT+AGG | 0.372962 | 1_1:+59409269 | None:intergenic |
| CTTTCTTCTTCTTGAGCGCC+TGG | 0.376215 | 1_1:+59410555 | None:intergenic |
| GTTGCACCGGGTGGCTAGCT+TGG | 0.383977 | 1_1:-59409345 | Msa0032360:CDS |
| GTGCACCCCATATCTTCGTT+TGG | 0.386929 | 1_1:-59409109 | Msa0032360:three_prime_UTR |
| CATAGACTTTAATGTATAAG+AGG | 0.389564 | 1_1:+59409072 | None:intergenic |
| TGCGGTGACCATAGGTTGTC+GGG | 0.393062 | 1_1:+59414077 | None:intergenic |
| ACTAAAGCAACCACAAGATA+TGG | 0.405332 | 1_1:+59409247 | None:intergenic |
| CCAAACAATGCAGCAGTTGT+AGG | 0.408840 | 1_1:-59409398 | Msa0032360:CDS |
| TGATTCAAACCTTCAGAAAT+GGG | 0.409793 | 1_1:+59412024 | None:intergenic |
| TCTTGTGGACCTCCTCCTAA+TGG | 0.410328 | 1_1:-59409284 | Msa0032360:CDS |
| GTCAAGAAGTTATTCTTGTC+TGG | 0.411500 | 1_1:-59409226 | Msa0032360:three_prime_UTR |
| CCGTTGATTCCGAAGAATAT+CGG | 0.415030 | 1_1:-59413860 | Msa0032360:CDS |
| TCCTCTAATGCTACTAAAGT+TGG | 0.420756 | 1_1:-59412054 | Msa0032360:CDS |
| ATGGGGATGCCAGCATTTGA+TGG | 0.424587 | 1_1:-59409575 | Msa0032360:CDS |
| GCAGGCTCATTTAACTGAGT+TGG | 0.425028 | 1_1:-59410533 | Msa0032360:CDS |
| GCGCCTGGCTGACTCTCTAT+TGG | 0.428094 | 1_1:+59410570 | None:intergenic |
| ATTCATGTCACCGGCGGCGC+CGG | 0.438697 | 1_1:-59414053 | Msa0032360:CDS |
| CTTTAGGTTTCACAATTAAG+AGG | 0.441246 | 1_1:-59410393 | Msa0032360:intron |
| GAGACTGTGAAAAGAGTTAC+CGG | 0.441519 | 1_1:-59409638 | Msa0032360:CDS |
| CAGAACAGCCCGATATTCTT+CGG | 0.443037 | 1_1:+59413851 | None:intergenic |
| TCCACTTGTTGATGGCCTAA+TGG | 0.446126 | 1_1:+59411620 | None:intergenic |
| GGAAGCGCTGCGACTCATCT+TGG | 0.448544 | 1_1:+59414019 | None:intergenic |
| GAGGACTGTGGTCCATTCTC+AGG | 0.449150 | 1_1:+59412072 | None:intergenic |
| GCCACCGGAGGTGGTCCATT+GGG | 0.449839 | 1_1:+59413882 | None:intergenic |
| CGTTGATTCCGAAGAATATC+GGG | 0.456409 | 1_1:-59413859 | Msa0032360:CDS |
| AAACAGCTCCTCCGTTGCAC+CGG | 0.457579 | 1_1:-59409358 | Msa0032360:CDS |
| TTTGCCCAATGGACCACCTC+CGG | 0.460821 | 1_1:-59413886 | Msa0032360:CDS |
| GGCGGTATGGAAGGGATCGC+AGG | 0.461844 | 1_1:+59411666 | None:intergenic |
| GCGCTGCGGTTGCCATGACT+AGG | 0.462989 | 1_1:-59413806 | Msa0032360:CDS |
| TCTGAAGAGTAAGCTGAATC+AGG | 0.465092 | 1_1:-59413832 | Msa0032360:CDS |
| GAATCAACGGCCACCGGAGG+TGG | 0.465283 | 1_1:+59413873 | None:intergenic |
| GTTTGGTTCATGCGAGGGAA+GGG | 0.469923 | 1_1:-59409031 | Msa0032360:three_prime_UTR |
| AAAGATCTTAAAGATACTAC+TGG | 0.477076 | 1_1:-59408981 | Msa0032360:three_prime_UTR |
| GGCCACCGGAGGTGGTCCAT+TGG | 0.477571 | 1_1:+59413881 | None:intergenic |
| ATGAGAGTCAACAATGGGTT+GGG | 0.479222 | 1_1:-59409449 | Msa0032360:CDS |
| TTCTGCACAGGCGGTATGGA+AGG | 0.484341 | 1_1:+59411657 | None:intergenic |
| GGATTCATCGCCGGCGCCGC+CGG | 0.486207 | 1_1:+59414043 | None:intergenic |
| CATTCCCCAAACGAAGATAT+GGG | 0.490546 | 1_1:+59409103 | None:intergenic |
| ATGCCTGACATGTCATCAAT+GGG | 0.494648 | 1_1:-59409593 | Msa0032360:CDS |
| CAGCTTCTTGCAGAAAGCGT+TGG | 0.498650 | 1_1:+59413985 | None:intergenic |
| GAGTCGCAGCGCTTCCGAAT+GGG | 0.498693 | 1_1:-59414012 | Msa0032360:CDS |
| AAAGCGTTGGAACGCCCATT+CGG | 0.499920 | 1_1:+59413998 | None:intergenic |
| ACGAAATCCCCGACAACCTA+TGG | 0.501904 | 1_1:-59414085 | Msa0032360:CDS |
| TTTGGTTCATGCGAGGGAAG+GGG | 0.506130 | 1_1:-59409030 | Msa0032360:three_prime_UTR |
| TCTTCGGAATCAACGGCCAC+CGG | 0.506977 | 1_1:+59413867 | None:intergenic |
| CATTGCAAATCAATTTAATG+AGG | 0.507385 | 1_1:-59409154 | Msa0032360:three_prime_UTR |
| ATCCCCATTGATGACATGTC+AGG | 0.511654 | 1_1:+59409590 | None:intergenic |
| TGTTTGGTTCATGCGAGGGA+AGG | 0.519821 | 1_1:-59409032 | Msa0032360:three_prime_UTR |
| CTGCGGTGACCATAGGTTGT+CGG | 0.521113 | 1_1:+59414076 | None:intergenic |
| CATCTTCAGAAGCGGATTCG+TGG | 0.522135 | 1_1:-59409320 | Msa0032360:CDS |
| TGCATCTGCTGAATTGTCTG+AGG | 0.523554 | 1_1:+59409547 | None:intergenic |
| GCATCTGCTGAATTGTCTGA+GGG | 0.526766 | 1_1:+59409548 | None:intergenic |
| GAGGGGCTTCCATCAAATGC+TGG | 0.527926 | 1_1:+59409566 | None:intergenic |
| TTCCAACAAACAACATGGAT+AGG | 0.529412 | 1_1:-59414121 | None:intergenic |
| AACAGCTCCTCCGTTGCACC+GGG | 0.530036 | 1_1:-59409357 | Msa0032360:CDS |
| CATGCCTGACATGTCATCAA+TGG | 0.535358 | 1_1:-59409594 | Msa0032360:CDS |
| AGGTGGTCCATTGGGCAAAA+CGG | 0.537410 | 1_1:+59413890 | None:intergenic |
| ATGAAACAATGGGTTCAATC+CGG | 0.537486 | 1_1:+59409619 | None:intergenic |
| TACTGCTCTCCATTAGGAGG+AGG | 0.537865 | 1_1:+59409275 | None:intergenic |
| AAGCTAGCCACCCGGTGCAA+CGG | 0.537945 | 1_1:+59409347 | None:intergenic |
| CAGGCATGACATGAAACAAT+GGG | 0.540921 | 1_1:+59409609 | None:intergenic |
| TATGAGAGTCAACAATGGGT+TGG | 0.540959 | 1_1:-59409450 | Msa0032360:CDS |
| AAGAGGTGAAAATTCTACCT+TGG | 0.544049 | 1_1:-59410376 | Msa0032360:CDS |
| AGTTGTAGGTGGGAACAAGA+TGG | 0.544585 | 1_1:-59409384 | Msa0032360:CDS |
| CGCTGCGGTTGCCATGACTA+GGG | 0.544605 | 1_1:-59413805 | Msa0032360:intron |
| CTACTGACGTAAAACGAGTA+AGG | 0.544656 | 1_1:-59411530 | Msa0032360:CDS |
| GGATCTCAGCCCATTTCTGA+AGG | 0.545730 | 1_1:-59412033 | Msa0032360:intron |
| GGCATAGGATTAATAGATGT+GGG | 0.545925 | 1_1:+59409482 | None:intergenic |
| TCCTCTGTTGCTGACAACAC+CGG | 0.546501 | 1_1:-59413942 | Msa0032360:intron |
| TGAGTCGCAGCGCTTCCGAA+TGG | 0.548231 | 1_1:-59414013 | Msa0032360:CDS |
| TTGGTTCATGCGAGGGAAGG+GGG | 0.549040 | 1_1:-59409029 | Msa0032360:three_prime_UTR |
| CATGAATCTGCGGTGACCAT+AGG | 0.554146 | 1_1:+59414069 | None:intergenic |
| AACAATGCAGCAGTTGTAGG+TGG | 0.555285 | 1_1:-59409395 | Msa0032360:CDS |
| TCTTTATCTTGTAATATAGG+TGG | 0.555696 | 1_1:+59411702 | None:intergenic |
| CAGAAGCGGATTCGTGGTGG+CGG | 0.557372 | 1_1:-59409314 | Msa0032360:CDS |
| GGAAGAAGAAGGAGAAGGTG+TGG | 0.558163 | 1_1:+59413962 | None:intergenic |
| TGGTCCATTCTCAGGAAAAG+TGG | 0.558279 | 1_1:+59412080 | None:intergenic |
| GTTGTAGGTGGGAACAAGAT+GGG | 0.562961 | 1_1:-59409383 | Msa0032360:CDS |
| TTTCCAATAGAGAGTCAGCC+AGG | 0.566133 | 1_1:-59410573 | Msa0032360:CDS |
| CAGTAAATTGCCATATCTTG+TGG | 0.566791 | 1_1:-59409257 | Msa0032360:exon |
| CCGATATTCTTCGGAATCAA+CGG | 0.569768 | 1_1:+59413860 | None:intergenic |
| CTAGCCACCCGGTGCAACGG+AGG | 0.575800 | 1_1:+59409350 | None:intergenic |
| AGGGATCGCAGGTGGTACCT+TGG | 0.576379 | 1_1:+59411677 | None:intergenic |
| TCAGCAACAGAGGAAGAAGA+AGG | 0.578164 | 1_1:+59413951 | None:intergenic |
| GCGCTCAAGAAGAAGAAAGC+AGG | 0.578810 | 1_1:-59410551 | Msa0032360:CDS |
| ACCGGTGTTGTCAGCAACAG+AGG | 0.579200 | 1_1:+59413941 | None:intergenic |
| TCTGCACAGGCGGTATGGAA+GGG | 0.579471 | 1_1:+59411658 | None:intergenic |
| TTTAACTGAGTTGGAAACAC+AGG | 0.582001 | 1_1:-59410524 | Msa0032360:intron |
| TGGCATAGGATTAATAGATG+TGG | 0.582245 | 1_1:+59409481 | None:intergenic |
| ATAGACTTTAATGTATAAGA+GGG | 0.582705 | 1_1:+59409073 | None:intergenic |
| GCCCAATGGACCACCTCCGG+TGG | 0.585880 | 1_1:-59413883 | Msa0032360:CDS |
| TCCAACAAACAACATGGATA+GGG | 0.587093 | 1_1:-59414120 | None:intergenic |
| CATTCTCAGGAAAAGTGGCT+AGG | 0.587934 | 1_1:+59412085 | None:intergenic |
| ATTTACTGCTCTCCATTAGG+AGG | 0.588321 | 1_1:+59409272 | None:intergenic |
| GACATATATGATTGACAGCA+CGG | 0.588439 | 1_1:-59411556 | Msa0032360:CDS |
| CAAAATGTTTGGTTCATGCG+AGG | 0.590432 | 1_1:-59409037 | Msa0032360:three_prime_UTR |
| AAAATGTTTGGTTCATGCGA+GGG | 0.590503 | 1_1:-59409036 | Msa0032360:three_prime_UTR |
| TCAGGCATGACATGAAACAA+TGG | 0.593558 | 1_1:+59409608 | None:intergenic |
| GCACCCCATATCTTCGTTTG+GGG | 0.594035 | 1_1:-59409107 | Msa0032360:three_prime_UTR |
| ATTACAAGATAAAGATGCCA+AGG | 0.595359 | 1_1:-59411694 | Msa0032360:CDS |
| GTCTGATGATGACGAAGCTG+AGG | 0.596500 | 1_1:-59411583 | Msa0032360:CDS |
| AGCTCCTCCGTTGCACCGGG+TGG | 0.597935 | 1_1:-59409354 | Msa0032360:CDS |
| ATGATATGAGAGTCAACAAT+GGG | 0.599172 | 1_1:-59409454 | Msa0032360:CDS |
| TGTTGAAACGTTAAGAGCAA+AGG | 0.608038 | 1_1:-59410283 | Msa0032360:intron |
| GCCATTAGGCCATCAACAAG+TGG | 0.609169 | 1_1:-59411621 | Msa0032360:CDS |
| AGCGCTGCGACTCATCTTGG+AGG | 0.610597 | 1_1:+59414022 | None:intergenic |
| TCGGAATCAACGGCCACCGG+AGG | 0.611990 | 1_1:+59413870 | None:intergenic |
| GCTTGGAACATCTTCAGAAG+CGG | 0.612188 | 1_1:-59409328 | Msa0032360:CDS |
| CTCATATCATGACATGGCAT+AGG | 0.623120 | 1_1:+59409467 | None:intergenic |
| TCTGATGATGACGAAGCTGA+GGG | 0.626334 | 1_1:-59411582 | Msa0032360:CDS |
| CATCTTGGAGGATTCATCGC+CGG | 0.632617 | 1_1:+59414034 | None:intergenic |
| GATGTTCCAAGCTAGCCACC+CGG | 0.633541 | 1_1:+59409339 | None:intergenic |
| TCACCGCAGATTCATGTCAC+CGG | 0.635057 | 1_1:-59414062 | Msa0032360:CDS |
| ACAGAGGAAGAAGAAGGAGA+AGG | 0.637590 | 1_1:+59413957 | None:intergenic |
| GGTATGGAAGGGATCGCAGG+TGG | 0.640990 | 1_1:+59411669 | None:intergenic |
| CCAAAAGTACACTGATTCTG+CGG | 0.642477 | 1_1:-59410331 | Msa0032360:CDS |
| GCTGAATCAGGCATGCGCTG+CGG | 0.643579 | 1_1:-59413820 | Msa0032360:CDS |
| TGATGTGGATCGTCTTGCAC+AGG | 0.644197 | 1_1:+59409518 | None:intergenic |
| ACAATGCAGCAGTTGTAGGT+GGG | 0.644613 | 1_1:-59409394 | Msa0032360:CDS |
| ATAGGTGGATCGCTTCCAGA+AGG | 0.645523 | 1_1:+59411717 | None:intergenic |
| TGATGGCCTAATGGCAACAA+TGG | 0.646272 | 1_1:+59411629 | None:intergenic |
| GGTTGATAGAAATGATGATG+TGG | 0.646871 | 1_1:+59409503 | None:intergenic |
| GCGGTGACCATAGGTTGTCG+GGG | 0.657758 | 1_1:+59414078 | None:intergenic |
| ATCAGTAAGACGCTTTACCA+AGG | 0.660921 | 1_1:+59410359 | None:intergenic |
| TTGACTCTCATATCATGACA+TGG | 0.663706 | 1_1:+59409461 | None:intergenic |
| CTTCAGAAGCGGATTCGTGG+TGG | 0.671591 | 1_1:-59409317 | Msa0032360:CDS |
| CCGCCGGTGACATGAATCTG+CGG | 0.671643 | 1_1:+59414059 | None:intergenic |
| CCGCAGATTCATGTCACCGG+CGG | 0.672407 | 1_1:-59414059 | Msa0032360:CDS |
| TTAGTAGCATTAGAGGACTG+TGG | 0.673158 | 1_1:+59412060 | None:intergenic |
| CATCTGCTGAATTGTCTGAG+GGG | 0.674812 | 1_1:+59409549 | None:intergenic |
| CATGATATGAGAGTCAACAA+TGG | 0.678198 | 1_1:-59409455 | Msa0032360:CDS |
| GGTGGCGGTGTCGATTCTTG+TGG | 0.683085 | 1_1:-59409299 | Msa0032360:CDS |
| ATTCCCCAAACGAAGATATG+GGG | 0.689146 | 1_1:+59409104 | None:intergenic |
| CATGGATAGGGTATTCTCAG+TGG | 0.691390 | 1_1:-59414108 | Msa0032360:CDS |
| CTGACGTAAAACGAGTAAGG+AGG | 0.694894 | 1_1:-59411527 | Msa0032360:intron |
| TGCCTGACATGTCATCAATG+GGG | 0.791811 | 1_1:-59409592 | Msa0032360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAACTAAATTTCAAA+AGG | + | chr1_1:59409742-59409761 | None:intergenic | 10.0% |
| !! | AAAAAAATATTTATTAACCA+AGG | + | chr1_1:59410579-59410598 | None:intergenic | 10.0% |
| !!! | CTTACAAATAATATAATTTT+TGG | + | chr1_1:59412283-59412302 | None:intergenic | 10.0% |
| !!! | TTTTTGTTATTTTTGCATTA+TGG | - | chr1_1:59409359-59409378 | Msa0032360:CDS | 15.0% |
| !!! | TTTTGTTATTTTTGCATTAT+GGG | - | chr1_1:59409360-59409379 | Msa0032360:CDS | 15.0% |
| !! | AAAATAATGCAAAAAGAAAA+TGG | + | chr1_1:59410362-59410381 | None:intergenic | 15.0% |
| !! | AAAAAGTTTAATGACAATAT+TGG | - | chr1_1:59411089-59411108 | Msa0032360:intron | 15.0% |
| !! | TTGAGAGAATAAAAAAAAAA+AGG | + | chr1_1:59411807-59411826 | None:intergenic | 15.0% |
| !! | TTGTTATAACAAATAAAAAG+TGG | + | chr1_1:59412174-59412193 | None:intergenic | 15.0% |
| !!! | ATAATTTTTGGATAAAACTT+GGG | + | chr1_1:59412271-59412290 | None:intergenic | 15.0% |
| !!! | TATAATTTTTGGATAAAACT+TGG | + | chr1_1:59412272-59412291 | None:intergenic | 15.0% |
| !! | ACAATAACAAAGTAAAAAAA+AGG | + | chr1_1:59412349-59412368 | None:intergenic | 15.0% |
| !!! | TGTGTATTTTATTTTATATC+TGG | - | chr1_1:59412524-59412543 | Msa0032360:intron | 15.0% |
| !! | TTTGTCTTATATTATACTTT+AGG | - | chr1_1:59412614-59412633 | Msa0032360:intron | 15.0% |
| !! | ACTAACTAATTAATATGAAA+TGG | - | chr1_1:59413057-59413076 | Msa0032360:intron | 15.0% |
| !! | TCACATTGTATTAACAAAAA+GGG | + | chr1_1:59409259-59409278 | None:intergenic | 20.0% |
| !! | TTCACATTGTATTAACAAAA+AGG | + | chr1_1:59409260-59409279 | None:intergenic | 20.0% |
| !! | AAATTAGAATCGATTATAAC+TGG | - | chr1_1:59409458-59409477 | Msa0032360:CDS | 20.0% |
| !! | AATTAGAATCGATTATAACT+GGG | - | chr1_1:59409459-59409478 | Msa0032360:CDS | 20.0% |
| !!! | TTTTGTGTTTTTAATGCAAA+GGG | - | chr1_1:59409552-59409571 | Msa0032360:CDS | 20.0% |
| !!! | AATTCAAACTTCTATGATTT+TGG | + | chr1_1:59409608-59409627 | None:intergenic | 20.0% |
| !!! | TTATTCTAAAAAGACGTTTA+TGG | + | chr1_1:59409853-59409872 | None:intergenic | 20.0% |
| !!! | ATTTTTTCGTATAGAAACTT+TGG | - | chr1_1:59410377-59410396 | Msa0032360:CDS | 20.0% |
| !! | ATCTCAATAAATTACTTAAC+AGG | + | chr1_1:59411203-59411222 | None:intergenic | 20.0% |
| !! | ACATTGATATAATTGCAATT+TGG | - | chr1_1:59411577-59411596 | Msa0032360:CDS | 20.0% |
| !!! | AACAAACTTTGAGAAAATTA+TGG | - | chr1_1:59412189-59412208 | Msa0032360:intron | 20.0% |
| !!! | GAAGTGTTTAGTAAAATTAT+CGG | - | chr1_1:59413030-59413049 | Msa0032360:intron | 20.0% |
| !! | TTATATGCTATATAAGCTAA+CGG | - | chr1_1:59413245-59413264 | Msa0032360:intron | 20.0% |
| !! | ATAGACTTTAATGTATAAGA+GGG | + | chr1_1:59413953-59413972 | None:intergenic | 20.0% |
| ! | CACATTGTATTAACAAAAAG+GGG | + | chr1_1:59409258-59409277 | None:intergenic | 25.0% |
| ! | CAAACACAAATCAAAATGAT+TGG | + | chr1_1:59409289-59409308 | None:intergenic | 25.0% |
| !!! | CAATCATTTTGATTTGTGTT+TGG | - | chr1_1:59409287-59409306 | Msa0032360:CDS | 25.0% |
| !!! | GTTGTTTTAATTTAGCTGAT+TGG | - | chr1_1:59409423-59409442 | Msa0032360:CDS | 25.0% |
| ! | ATTATAACTGGGAAAATAAC+TGG | - | chr1_1:59409470-59409489 | Msa0032360:CDS | 25.0% |
| ! | CATTCATGTTCTATGAATTT+AGG | + | chr1_1:59409527-59409546 | None:intergenic | 25.0% |
| !!! | CTTTTGTGTTTTTAATGCAA+AGG | - | chr1_1:59409551-59409570 | Msa0032360:CDS | 25.0% |
| ! | AAGATAATCAATCCGAATTT+CGG | + | chr1_1:59409803-59409822 | None:intergenic | 25.0% |
| ! | GATTATCTTATCCAAATGAA+AGG | - | chr1_1:59409814-59409833 | Msa0032360:intron | 25.0% |
| ! | AAAAAGAATAGTTTCACAAC+CGG | + | chr1_1:59410406-59410425 | None:intergenic | 25.0% |
| !! | TTTCATATTTTCTTAGTCCT+TGG | - | chr1_1:59410559-59410578 | Msa0032360:CDS | 25.0% |
| !!! | TATGATCCATTACTTTTACA+TGG | - | chr1_1:59410797-59410816 | Msa0032360:intron | 25.0% |
| ! | TTCAAACCATGTAAAAGTAA+TGG | + | chr1_1:59410806-59410825 | None:intergenic | 25.0% |
| ! | ATGTGAAAATATCAGCAAAA+TGG | + | chr1_1:59410847-59410866 | None:intergenic | 25.0% |
| ! | ACTTTCCTCATTTAATCTTT+CGG | + | chr1_1:59411050-59411069 | None:intergenic | 25.0% |
| !!! | GGTTGGTAAAAGAAAATAAA+CGG | + | chr1_1:59411182-59411201 | None:intergenic | 25.0% |
| ! | CAATAAATTACTTAACAGGT+TGG | + | chr1_1:59411199-59411218 | None:intergenic | 25.0% |
| ! | GTAATTTATTGAGATGCTTT+AGG | - | chr1_1:59411208-59411227 | Msa0032360:intron | 25.0% |
| ! | TATTTGACACAATTCAACAA+GGG | + | chr1_1:59411263-59411282 | None:intergenic | 25.0% |
| ! | ATATTTGACACAATTCAACA+AGG | + | chr1_1:59411264-59411283 | None:intergenic | 25.0% |
| ! | TCAAATATATCTATCTATGC+AGG | - | chr1_1:59411276-59411295 | Msa0032360:intron | 25.0% |
| ! | TCTTTATCTTGTAATATAGG+TGG | + | chr1_1:59411324-59411343 | None:intergenic | 25.0% |
| ! | GCATCTTTATCTTGTAATAT+AGG | + | chr1_1:59411327-59411346 | None:intergenic | 25.0% |
| !! | AAAAAAAAAAAGGTTCTAGC+AGG | + | chr1_1:59411797-59411816 | None:intergenic | 25.0% |
| !! | CTGCAAGTTGAAAAAAATTA+TGG | - | chr1_1:59412094-59412113 | Msa0032360:CDS | 25.0% |
| ! | TTGAGAAAATTATGGATTTG+AGG | - | chr1_1:59412197-59412216 | Msa0032360:intron | 25.0% |
| ! | TCTGATCTGTGAAAAAAATT+AGG | + | chr1_1:59412324-59412343 | None:intergenic | 25.0% |
| !!! | CTAATGACATCTATTTTTTC+AGG | - | chr1_1:59412423-59412442 | Msa0032360:intron | 25.0% |
| !! | CTTTCATTTTAAGCTCTATT+TGG | + | chr1_1:59413281-59413300 | None:intergenic | 25.0% |
| !! | TCCATGTTATTCTTTCTTTT+AGG | - | chr1_1:59413348-59413367 | Msa0032360:intron | 25.0% |
| ! | ACCTAAAAGAAAGAATAACA+TGG | + | chr1_1:59413352-59413371 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTTTAGGTAAAGA+TGG | - | chr1_1:59413357-59413376 | Msa0032360:intron | 25.0% |
| ! | CATTGCAAATCAATTTAATG+AGG | - | chr1_1:59413869-59413888 | Msa0032360:CDS | 25.0% |
| ! | CATAGACTTTAATGTATAAG+AGG | + | chr1_1:59413954-59413973 | None:intergenic | 25.0% |
| ! | AAAGATCTTAAAGATACTAC+TGG | - | chr1_1:59414042-59414061 | Msa0032360:CDS | 25.0% |
| !! | TACTAGTTTGAAAAATTTCC+AGG | - | chr1_1:59414085-59414104 | Msa0032360:CDS | 25.0% |
| !! | CTATGATTTTGGAAGTGAAA+GGG | + | chr1_1:59409597-59409616 | None:intergenic | 30.0% |
| !! | TCTATGATTTTGGAAGTGAA+AGG | + | chr1_1:59409598-59409617 | None:intergenic | 30.0% |
| ! | TTCTTCTTTTAGTATTTCCC+TGG | - | chr1_1:59409653-59409672 | Msa0032360:CDS | 30.0% |
| GGCTTACAAATTCCTATTAA+CGG | + | chr1_1:59409721-59409740 | None:intergenic | 30.0% | |
| TTATCCAAATGAAAGGTCTT+TGG | - | chr1_1:59409821-59409840 | Msa0032360:intron | 30.0% | |
| GATAAGATTTCCAGAGAAAA+TGG | + | chr1_1:59410076-59410095 | None:intergenic | 30.0% | |
| CAAAGAAAAACGACATAAGA+AGG | - | chr1_1:59410164-59410183 | Msa0032360:intron | 30.0% | |
| !! | TTTCAAAGTACCGTATGTAT+TGG | - | chr1_1:59410294-59410313 | Msa0032360:CDS | 30.0% |
| AAGACCCAATATTTAGATCT+GGG | + | chr1_1:59410326-59410345 | None:intergenic | 30.0% | |
| TAAGACCCAATATTTAGATC+TGG | + | chr1_1:59410327-59410346 | None:intergenic | 30.0% | |
| AAAAGAATAGTTTCACAACC+GGG | + | chr1_1:59410405-59410424 | None:intergenic | 30.0% | |
| AATAGCCATAGTTATCAATG+CGG | + | chr1_1:59410678-59410697 | None:intergenic | 30.0% | |
| ATTGCACAAAATGAAGTGTA+GGG | + | chr1_1:59410756-59410775 | None:intergenic | 30.0% | |
| AATTGCACAAAATGAAGTGT+AGG | + | chr1_1:59410757-59410776 | None:intergenic | 30.0% | |
| AATATCAGCAAAATGGAAGA+TGG | + | chr1_1:59410840-59410859 | None:intergenic | 30.0% | |
| TGTTTCTTACTCATTGCAAT+AGG | - | chr1_1:59410893-59410912 | Msa0032360:intron | 30.0% | |
| GTTTCTTACTCATTGCAATA+GGG | - | chr1_1:59410894-59410913 | Msa0032360:intron | 30.0% | |
| TGATTCAAACCTTCAGAAAT+GGG | + | chr1_1:59411002-59411021 | None:intergenic | 30.0% | |
| TTGATTCAAACCTTCAGAAA+TGG | + | chr1_1:59411003-59411022 | None:intergenic | 30.0% | |
| GAAAACCGAAAGATTAAATG+AGG | - | chr1_1:59411042-59411061 | Msa0032360:intron | 30.0% | |
| ATTACAAGATAAAGATGCCA+AGG | - | chr1_1:59411329-59411348 | Msa0032360:intron | 30.0% | |
| AAAAAACCATTGTTGCCATT+AGG | - | chr1_1:59411388-59411407 | Msa0032360:intron | 30.0% | |
| AACAAACTTCTAAATCACTC+TGG | + | chr1_1:59411621-59411640 | None:intergenic | 30.0% | |
| CTTAAAAAATTGCAGCCAAT+CGG | - | chr1_1:59411693-59411712 | Msa0032360:CDS | 30.0% | |
| TATAAGATATTGACACCGAT+TGG | + | chr1_1:59411711-59411730 | None:intergenic | 30.0% | |
| ! | TTATGTGCAAACTGTTGATT+TGG | - | chr1_1:59411746-59411765 | Msa0032360:intron | 30.0% |
| TACAAAATGCAGTCAAATAG+CGG | - | chr1_1:59411922-59411941 | Msa0032360:intron | 30.0% | |
| TGAACATTCTAACTTCAAGA+GGG | + | chr1_1:59412038-59412057 | None:intergenic | 30.0% | |
| ATGAACATTCTAACTTCAAG+AGG | + | chr1_1:59412039-59412058 | None:intergenic | 30.0% | |
| !! | TTCCTTAGGTACTTTTTGTA+TGG | - | chr1_1:59412134-59412153 | Msa0032360:intron | 30.0% |
| !! | AACCATACAAAAAGTACCTA+AGG | + | chr1_1:59412139-59412158 | None:intergenic | 30.0% |
| TTATGGATTTGAGGAAATCA+TGG | - | chr1_1:59412206-59412225 | Msa0032360:intron | 30.0% | |
| ATTAGACATTGAACTAACCA+AGG | + | chr1_1:59412408-59412427 | None:intergenic | 30.0% | |
| ! | CTTTAGGTTTCACAATTAAG+AGG | - | chr1_1:59412630-59412649 | Msa0032360:intron | 30.0% |
| CAATGTAAATACATGAAGCA+GGG | + | chr1_1:59412771-59412790 | None:intergenic | 30.0% | |
| ! | AAAAACTGTGGCAAACATTT+TGG | - | chr1_1:59412798-59412817 | Msa0032360:intron | 30.0% |
| TCTTTCTAAACAAGTTCCTT+AGG | - | chr1_1:59412822-59412841 | Msa0032360:intron | 30.0% | |
| CTCTGTTAGGTAAAATATAG+CGG | - | chr1_1:59412934-59412953 | Msa0032360:intron | 30.0% | |
| ! | TAAGCTACTTGATAGCTTAT+AGG | - | chr1_1:59412965-59412984 | Msa0032360:intron | 30.0% |
| ! | AAGCTACTTGATAGCTTATA+GGG | - | chr1_1:59412966-59412985 | Msa0032360:intron | 30.0% |
| ! | ATTTTAAGCTCTATTTGGCA+AGG | + | chr1_1:59413276-59413295 | None:intergenic | 30.0% |
| ACAAATATCTGACATGTTTC+TGG | - | chr1_1:59413319-59413338 | Msa0032360:intron | 30.0% | |
| ATGATATGAGAGTCAACAAT+GGG | - | chr1_1:59413569-59413588 | Msa0032360:intron | 30.0% | |
| ACTTATTCCCTCAAAATGTT+TGG | - | chr1_1:59413975-59413994 | Msa0032360:CDS | 30.0% | |
| ! | GAATTTTATTGAAAGGGAGA+TGG | - | chr1_1:59414018-59414037 | Msa0032360:CDS | 30.0% |
| ! | AATCAAACAAACTTGTTTCC+TGG | + | chr1_1:59414106-59414125 | None:intergenic | 30.0% |
| AAGCAAAAATACCCTAGTCA+TGG | + | chr1_1:59409232-59409251 | None:intergenic | 35.0% | |
| GATTTGTGTTTGGATCTGTT+TGG | - | chr1_1:59409297-59409316 | Msa0032360:CDS | 35.0% | |
| ! | ATCTGTTTGGTTCATGTGTT+TGG | - | chr1_1:59409310-59409329 | Msa0032360:CDS | 35.0% |
| ! | TGGTTCATGTGTTTGGTAAT+TGG | - | chr1_1:59409317-59409336 | Msa0032360:CDS | 35.0% |
| ! | GGTTCATGTGTTTGGTAATT+GGG | - | chr1_1:59409318-59409337 | Msa0032360:CDS | 35.0% |
| ! | TATGGGTTCTGATATTCTTC+TGG | - | chr1_1:59409377-59409396 | Msa0032360:CDS | 35.0% |
| AGGGTAACCTTATAGTGAAT+TGG | - | chr1_1:59409571-59409590 | Msa0032360:CDS | 35.0% | |
| !!! | CCTTTGCTTTTTCTACTGAT+AGG | + | chr1_1:59409681-59409700 | None:intergenic | 35.0% |
| CCTATCAGTAGAAAAAGCAA+AGG | - | chr1_1:59409678-59409697 | Msa0032360:intron | 35.0% | |
| ATCAGTAGAAAAAGCAAAGG+AGG | - | chr1_1:59409681-59409700 | Msa0032360:intron | 35.0% | |
| AAAAAGCAAAGGAGGATTGA+TGG | - | chr1_1:59409689-59409708 | Msa0032360:intron | 35.0% | |
| CGCTTTCAAATCCACAAAAT+CGG | + | chr1_1:59410013-59410032 | None:intergenic | 35.0% | |
| ! | CGATTTTGTGGATTTGAAAG+CGG | - | chr1_1:59410011-59410030 | Msa0032360:intron | 35.0% |
| TCCAGAGAAAATGGTTAAAG+TGG | + | chr1_1:59410067-59410086 | None:intergenic | 35.0% | |
| AAAAACGACATAAGAAGGAG+AGG | - | chr1_1:59410169-59410188 | Msa0032360:intron | 35.0% | |
| ACATAAGAAGGAGAGGTAAT+GGG | - | chr1_1:59410176-59410195 | Msa0032360:intron | 35.0% | |
| ! | GCTTTGACTTATGAGAAACT+AGG | - | chr1_1:59410250-59410269 | Msa0032360:intron | 35.0% |
| ! | TACATACGGTACTTTGAAAG+AGG | + | chr1_1:59410293-59410312 | None:intergenic | 35.0% |
| TAGGCCCAGATCTAAATATT+GGG | - | chr1_1:59410319-59410338 | Msa0032360:CDS | 35.0% | |
| TAGTTATCAATGCGGAAATG+CGG | + | chr1_1:59410670-59410689 | None:intergenic | 35.0% | |
| ! | CATTTCCGCATTGATAACTA+TGG | - | chr1_1:59410670-59410689 | Msa0032360:intron | 35.0% |
| GATGACCAAAAGTAAAAGCA+AGG | + | chr1_1:59410715-59410734 | None:intergenic | 35.0% | |
| TCCTCTAATGCTACTAAAGT+TGG | - | chr1_1:59410969-59410988 | Msa0032360:intron | 35.0% | |
| TCCAACTTTAGTAGCATTAG+AGG | + | chr1_1:59410973-59410992 | None:intergenic | 35.0% | |
| ! | AGGAAAGTTGATCAGATCTA+TGG | - | chr1_1:59411062-59411081 | Msa0032360:intron | 35.0% |
| TCCACCTCTAAATTACTCAT+GGG | + | chr1_1:59411116-59411135 | None:intergenic | 35.0% | |
| ATCCACCTCTAAATTACTCA+TGG | + | chr1_1:59411117-59411136 | None:intergenic | 35.0% | |
| !!! | ACAATGGTTTTTTTCTGCAC+AGG | + | chr1_1:59411381-59411400 | None:intergenic | 35.0% |
| GACATATATGATTGACAGCA+CGG | - | chr1_1:59411467-59411486 | Msa0032360:intron | 35.0% | |
| ! | TTACTCGTTTTACGTCAGTA+GGG | + | chr1_1:59411494-59411513 | None:intergenic | 35.0% |
| !! | TTTTAAGTATGCCTGTCACT+TGG | + | chr1_1:59411680-59411699 | None:intergenic | 35.0% |
| TTGTTAGATAGCAGCTATAG+TGG | - | chr1_1:59411835-59411854 | Msa0032360:intron | 35.0% | |
| ! | GTTTGAAATGTTCTGAATCG+CGG | + | chr1_1:59411999-59412018 | None:intergenic | 35.0% |
| AAACTTAGACACGTTTCCTT+AGG | - | chr1_1:59412120-59412139 | Msa0032360:intron | 35.0% | |
| ! | TTTAACTGAGTTGGAAACAC+AGG | - | chr1_1:59412499-59412518 | Msa0032360:intron | 35.0% |
| CAACAGAAACATTGAAGAGA+GGG | + | chr1_1:59412561-59412580 | None:intergenic | 35.0% | |
| AAGAGGTGAAAATTCTACCT+TGG | - | chr1_1:59412647-59412666 | Msa0032360:intron | 35.0% | |
| TGTTGAAACGTTAAGAGCAA+AGG | - | chr1_1:59412740-59412759 | Msa0032360:intron | 35.0% | |
| GCAATGTAAATACATGAAGC+AGG | + | chr1_1:59412772-59412791 | None:intergenic | 35.0% | |
| CTTCATGTATTTACATTGCC+TGG | - | chr1_1:59412773-59412792 | Msa0032360:intron | 35.0% | |
| !!! | TTTTTTGTAAGCCAGACCTA+AGG | + | chr1_1:59412841-59412860 | None:intergenic | 35.0% |
| AACTAAATCAACGCTCTGTT+AGG | - | chr1_1:59412921-59412940 | Msa0032360:intron | 35.0% | |
| ! | GGGTATAAGCTAGTTGATAT+AGG | - | chr1_1:59412986-59413005 | Msa0032360:intron | 35.0% |
| TTCGTATCGTCAAAATTGAG+CGG | + | chr1_1:59413224-59413243 | None:intergenic | 35.0% | |
| !! | TATCTGACATGTTTCTGGTT+TGG | - | chr1_1:59413324-59413343 | Msa0032360:intron | 35.0% |
| ! | ATGAAACAATGGGTTCAATC+CGG | + | chr1_1:59413407-59413426 | None:intergenic | 35.0% |
| !! | GGTTGATAGAAATGATGATG+TGG | + | chr1_1:59413523-59413542 | None:intergenic | 35.0% |
| GGCATAGGATTAATAGATGT+GGG | + | chr1_1:59413544-59413563 | None:intergenic | 35.0% | |
| TGGCATAGGATTAATAGATG+TGG | + | chr1_1:59413545-59413564 | None:intergenic | 35.0% | |
| TTGACTCTCATATCATGACA+TGG | + | chr1_1:59413565-59413584 | None:intergenic | 35.0% | |
| CATGATATGAGAGTCAACAA+TGG | - | chr1_1:59413568-59413587 | Msa0032360:intron | 35.0% | |
| CAGTAAATTGCCATATCTTG+TGG | - | chr1_1:59413766-59413785 | Msa0032360:intron | 35.0% | |
| ACTAAAGCAACCACAAGATA+TGG | + | chr1_1:59413779-59413798 | None:intergenic | 35.0% | |
| GTCAAGAAGTTATTCTTGTC+TGG | - | chr1_1:59413797-59413816 | Msa0032360:intron | 35.0% | |
| ! | GCATGAACCAAACATTTTGA+GGG | + | chr1_1:59413985-59414004 | None:intergenic | 35.0% |
| ! | AAAATGTTTGGTTCATGCGA+GGG | - | chr1_1:59413987-59414006 | Msa0032360:CDS | 35.0% |
| ! | AGGGGGAGAATTTTATTGAA+AGG | - | chr1_1:59414011-59414030 | Msa0032360:CDS | 35.0% |
| ! | GGGGGAGAATTTTATTGAAA+GGG | - | chr1_1:59414012-59414031 | Msa0032360:CDS | 35.0% |
| CCGATATTCTTCGGAATCAA+CGG | + | chr1_1:59409166-59409185 | None:intergenic | 40.0% | |
| !! | CCGTTGATTCCGAAGAATAT+CGG | - | chr1_1:59409163-59409182 | Msa0032360:three_prime_UTR | 40.0% |
| !! | CGTTGATTCCGAAGAATATC+GGG | - | chr1_1:59409164-59409183 | Msa0032360:three_prime_UTR | 40.0% |
| TCTGAAGAGTAAGCTGAATC+AGG | - | chr1_1:59409191-59409210 | Msa0032360:three_prime_UTR | 40.0% | |
| GAAAGGGCCAATTCACTATA+AGG | + | chr1_1:59409581-59409600 | None:intergenic | 40.0% | |
| ! | TTTTCTACTGATAGGAGCCA+GGG | + | chr1_1:59409673-59409692 | None:intergenic | 40.0% |
| ! | TTTTTCTACTGATAGGAGCC+AGG | + | chr1_1:59409674-59409693 | None:intergenic | 40.0% |
| TGATGGCATGAACCGTTAAT+AGG | - | chr1_1:59409706-59409725 | Msa0032360:intron | 40.0% | |
| CTAATAGCTGTGCCGAAATT+CGG | - | chr1_1:59409788-59409807 | Msa0032360:intron | 40.0% | |
| TCCAAATGAAAGGTCTTTGG+TGG | - | chr1_1:59409824-59409843 | Msa0032360:intron | 40.0% | |
| TTTGTGGATTTGAAAGCGGA+TGG | - | chr1_1:59410015-59410034 | Msa0032360:intron | 40.0% | |
| !! | GCCACTTTAACCATTTTCTC+TGG | - | chr1_1:59410063-59410082 | Msa0032360:intron | 40.0% |
| GACATAAGAAGGAGAGGTAA+TGG | - | chr1_1:59410175-59410194 | Msa0032360:intron | 40.0% | |
| CATAAGAAGGAGAGGTAATG+GGG | - | chr1_1:59410177-59410196 | Msa0032360:intron | 40.0% | |
| ! | ATAAGAAGGAGAGGTAATGG+GGG | - | chr1_1:59410178-59410197 | Msa0032360:intron | 40.0% |
| GAAGAAGAAGAACTGCAGTA+AGG | - | chr1_1:59410222-59410241 | Msa0032360:intron | 40.0% | |
| CAATATTTAGATCTGGGCCT+AGG | + | chr1_1:59410320-59410339 | None:intergenic | 40.0% | |
| CTAGGCCCAGATCTAAATAT+TGG | - | chr1_1:59410318-59410337 | Msa0032360:CDS | 40.0% | |
| !! | CGTATAGAAACTTTGGAACC+CGG | - | chr1_1:59410384-59410403 | Msa0032360:CDS | 40.0% |
| !! | GTCCTCCTTGCTTTTACTTT+TGG | - | chr1_1:59410707-59410726 | Msa0032360:intron | 40.0% |
| GACCAAAAGTAAAAGCAAGG+AGG | + | chr1_1:59410712-59410731 | None:intergenic | 40.0% | |
| TTAGTAGCATTAGAGGACTG+TGG | + | chr1_1:59410966-59410985 | None:intergenic | 40.0% | |
| CCACCTCTAAATTACTCATG+GGG | + | chr1_1:59411115-59411134 | None:intergenic | 40.0% | |
| !!! | ATGGTTTTTTTCTGCACAGG+CGG | + | chr1_1:59411378-59411397 | None:intergenic | 40.0% |
| ! | CTTGATGATCCACTTGTTGA+TGG | + | chr1_1:59411414-59411433 | None:intergenic | 40.0% |
| ! | CTTACTCGTTTTACGTCAGT+AGG | + | chr1_1:59411495-59411514 | None:intergenic | 40.0% |
| CTACTGACGTAAAACGAGTA+AGG | - | chr1_1:59411493-59411512 | Msa0032360:intron | 40.0% | |
| ! | TGTCACTTGGTTCATTAAGC+AGG | + | chr1_1:59411667-59411686 | None:intergenic | 40.0% |
| TGCTTAATGAACCAAGTGAC+AGG | - | chr1_1:59411666-59411685 | Msa0032360:CDS | 40.0% | |
| !! | TATAGTGGTGCTATACTGCT+GGG | - | chr1_1:59411850-59411869 | Msa0032360:intron | 40.0% |
| TAAAATCCCGCTGCACAAAA+GGG | + | chr1_1:59411954-59411973 | None:intergenic | 40.0% | |
| TTAAAATCCCGCTGCACAAA+AGG | + | chr1_1:59411955-59411974 | None:intergenic | 40.0% | |
| ! | TTCCTTAGGTGCTTTTCGTA+CGG | + | chr1_1:59412243-59412262 | None:intergenic | 40.0% |
| AAACTTGGGTGCATTTCCTT+AGG | + | chr1_1:59412257-59412276 | None:intergenic | 40.0% | |
| ! | ACACTCATTTGTTCGACTTG+AGG | - | chr1_1:59412372-59412391 | Msa0032360:intron | 40.0% |
| CCAACAGAAACATTGAAGAG+AGG | + | chr1_1:59412562-59412581 | None:intergenic | 40.0% | |
| ! | CCTCTCTTCAATGTTTCTGT+TGG | - | chr1_1:59412559-59412578 | Msa0032360:intron | 40.0% |
| ATCAGTAAGACGCTTTACCA+AGG | + | chr1_1:59412667-59412686 | None:intergenic | 40.0% | |
| !! | CCAAAAGTACACTGATTCTG+CGG | - | chr1_1:59412692-59412711 | Msa0032360:intron | 40.0% |
| CATTGCCTGGTTAAAAACTG+TGG | - | chr1_1:59412786-59412805 | Msa0032360:intron | 40.0% | |
| ! | GTTTGCCACAGTTTTTAACC+AGG | + | chr1_1:59412794-59412813 | None:intergenic | 40.0% |
| CTAAACAAGTTCCTTAGGTC+TGG | - | chr1_1:59412827-59412846 | Msa0032360:intron | 40.0% | |
| ATCGTCAAAATTGAGCGGTT+TGG | + | chr1_1:59413219-59413238 | None:intergenic | 40.0% | |
| GAGACTGTGAAAAGAGTTAC+CGG | - | chr1_1:59413385-59413404 | Msa0032360:intron | 40.0% | |
| CAGGCATGACATGAAACAAT+GGG | + | chr1_1:59413417-59413436 | None:intergenic | 40.0% | |
| TCAGGCATGACATGAAACAA+TGG | + | chr1_1:59413418-59413437 | None:intergenic | 40.0% | |
| ATGCCTGACATGTCATCAAT+GGG | - | chr1_1:59413430-59413449 | Msa0032360:intron | 40.0% | |
| CTCATATCATGACATGGCAT+AGG | + | chr1_1:59413559-59413578 | None:intergenic | 40.0% | |
| TATGAGAGTCAACAATGGGT+TGG | - | chr1_1:59413573-59413592 | Msa0032360:intron | 40.0% | |
| ! | ATGAGAGTCAACAATGGGTT+GGG | - | chr1_1:59413574-59413593 | Msa0032360:intron | 40.0% |
| ATTTACTGCTCTCCATTAGG+AGG | + | chr1_1:59413754-59413773 | None:intergenic | 40.0% | |
| GCAATTTACTGCTCTCCATT+AGG | + | chr1_1:59413757-59413776 | None:intergenic | 40.0% | |
| ATTCCCCAAACGAAGATATG+GGG | + | chr1_1:59413922-59413941 | None:intergenic | 40.0% | |
| CATTCCCCAAACGAAGATAT+GGG | + | chr1_1:59413923-59413942 | None:intergenic | 40.0% | |
| ! | CGCATGAACCAAACATTTTG+AGG | + | chr1_1:59413986-59414005 | None:intergenic | 40.0% |
| ! | CAAAATGTTTGGTTCATGCG+AGG | - | chr1_1:59413986-59414005 | Msa0032360:CDS | 40.0% |
| ACAGAGGAAGAAGAAGGAGA+AGG | + | chr1_1:59409069-59409088 | None:intergenic | 45.0% | |
| TCAGCAACAGAGGAAGAAGA+AGG | + | chr1_1:59409075-59409094 | None:intergenic | 45.0% | |
| CAGAACAGCCCGATATTCTT+CGG | + | chr1_1:59409175-59409194 | None:intergenic | 45.0% | |
| GCCACCAAAGACCTTTCATT+TGG | + | chr1_1:59409828-59409847 | None:intergenic | 45.0% | |
| GAAGAAGAACTGCAGTAAGG+TGG | - | chr1_1:59410225-59410244 | Msa0032360:intron | 45.0% | |
| ! | ACGGTACTTTGAAAGAGGCT+AGG | + | chr1_1:59410288-59410307 | None:intergenic | 45.0% |
| ! | AGTACCGTATGTATTGGCCT+AGG | - | chr1_1:59410300-59410319 | Msa0032360:CDS | 45.0% |
| !! | CGGACACTATTTTAGAGACG+CGG | + | chr1_1:59410614-59410633 | None:intergenic | 45.0% |
| AACCAAAAATTGGTGCGGAG+CGG | + | chr1_1:59410634-59410653 | None:intergenic | 45.0% | |
| !!! | CTCCGCACCAATTTTTGGTT+TGG | - | chr1_1:59410634-59410653 | Msa0032360:intron | 45.0% |
| GGCCAAACCAAAAATTGGTG+CGG | + | chr1_1:59410639-59410658 | None:intergenic | 45.0% | |
| AATGAAGTGTAGGGTGGAGA+TGG | + | chr1_1:59410747-59410766 | None:intergenic | 45.0% | |
| GCACAAAATGAAGTGTAGGG+TGG | + | chr1_1:59410753-59410772 | None:intergenic | 45.0% | |
| CATTCTCAGGAAAAGTGGCT+AGG | + | chr1_1:59410941-59410960 | None:intergenic | 45.0% | |
| !!! | CTAGCCACTTTTCCTGAGAA+TGG | - | chr1_1:59410939-59410958 | Msa0032360:intron | 45.0% |
| TGGTCCATTCTCAGGAAAAG+TGG | + | chr1_1:59410946-59410965 | None:intergenic | 45.0% | |
| TGGCCCCATGAGTAATTTAG+AGG | - | chr1_1:59411109-59411128 | Msa0032360:intron | 45.0% | |
| CCCCATGAGTAATTTAGAGG+TGG | - | chr1_1:59411112-59411131 | Msa0032360:intron | 45.0% | |
| TATGCAGGATCTGTTCCTTC+TGG | - | chr1_1:59411291-59411310 | Msa0032360:intron | 45.0% | |
| !!! | TTTTTTCTGCACAGGCGGTA+TGG | + | chr1_1:59411373-59411392 | None:intergenic | 45.0% |
| TGATGGCCTAATGGCAACAA+TGG | + | chr1_1:59411397-59411416 | None:intergenic | 45.0% | |
| !! | TCCACTTGTTGATGGCCTAA+TGG | + | chr1_1:59411406-59411425 | None:intergenic | 45.0% |
| ! | TCTGATGATGACGAAGCTGA+GGG | - | chr1_1:59411441-59411460 | Msa0032360:intron | 45.0% |
| CTGACGTAAAACGAGTAAGG+AGG | - | chr1_1:59411496-59411515 | Msa0032360:intron | 45.0% | |
| !! | GTGCAAACTGTTGATTTGGC+TGG | - | chr1_1:59411750-59411769 | Msa0032360:intron | 45.0% |
| !! | CTATAGTGGTGCTATACTGC+TGG | - | chr1_1:59411849-59411868 | Msa0032360:intron | 45.0% |
| ! | GATATAGCCCTTTTGTGCAG+CGG | - | chr1_1:59411944-59411963 | Msa0032360:intron | 45.0% |
| ! | ATATAGCCCTTTTGTGCAGC+GGG | - | chr1_1:59411945-59411964 | Msa0032360:intron | 45.0% |
| ! | ATGTTCTGAATCGCGGATAG+CGG | + | chr1_1:59411992-59412011 | None:intergenic | 45.0% |
| !! | AACCGTACGAAAAGCACCTA+AGG | - | chr1_1:59412238-59412257 | Msa0032360:intron | 45.0% |
| CTTGAGGACTCTTTCTACCT+TGG | - | chr1_1:59412388-59412407 | Msa0032360:intron | 45.0% | |
| TTTCCAATAGAGAGTCAGCC+AGG | - | chr1_1:59412450-59412469 | Msa0032360:intron | 45.0% | |
| GCAGGCTCATTTAACTGAGT+TGG | - | chr1_1:59412490-59412509 | Msa0032360:intron | 45.0% | |
| ! | CCGCAGAATCAGTGTACTTT+TGG | + | chr1_1:59412695-59412714 | None:intergenic | 45.0% |
| CATGCCTGACATGTCATCAA+TGG | - | chr1_1:59413429-59413448 | Msa0032360:intron | 45.0% | |
| TGCCTGACATGTCATCAATG+GGG | - | chr1_1:59413431-59413450 | Msa0032360:intron | 45.0% | |
| ! | ATCCCCATTGATGACATGTC+AGG | + | chr1_1:59413436-59413455 | None:intergenic | 45.0% |
| CATCTGCTGAATTGTCTGAG+GGG | + | chr1_1:59413477-59413496 | None:intergenic | 45.0% | |
| GCATCTGCTGAATTGTCTGA+GGG | + | chr1_1:59413478-59413497 | None:intergenic | 45.0% | |
| TGCATCTGCTGAATTGTCTG+AGG | + | chr1_1:59413479-59413498 | None:intergenic | 45.0% | |
| CCTACAACTGCTGCATTGTT+TGG | + | chr1_1:59413628-59413647 | None:intergenic | 45.0% | |
| CCAAACAATGCAGCAGTTGT+AGG | - | chr1_1:59413625-59413644 | Msa0032360:intron | 45.0% | |
| AACAATGCAGCAGTTGTAGG+TGG | - | chr1_1:59413628-59413647 | Msa0032360:intron | 45.0% | |
| ACAATGCAGCAGTTGTAGGT+GGG | - | chr1_1:59413629-59413648 | Msa0032360:intron | 45.0% | |
| AGTTGTAGGTGGGAACAAGA+TGG | - | chr1_1:59413639-59413658 | Msa0032360:intron | 45.0% | |
| GTTGTAGGTGGGAACAAGAT+GGG | - | chr1_1:59413640-59413659 | Msa0032360:intron | 45.0% | |
| GCTTGGAACATCTTCAGAAG+CGG | - | chr1_1:59413695-59413714 | Msa0032360:intron | 45.0% | |
| TGCACCCCATATCTTCGTTT+GGG | - | chr1_1:59413915-59413934 | Msa0032360:intron | 45.0% | |
| GCATTCCCCAAACGAAGATA+TGG | + | chr1_1:59413924-59413943 | None:intergenic | 45.0% | |
| ACGAAATCCCCGACAACCTA+TGG | - | chr1_1:59408938-59408957 | Msa0032360:three_prime_UTR | 50.0% | |
| CATGAATCTGCGGTGACCAT+AGG | + | chr1_1:59408957-59408976 | None:intergenic | 50.0% | |
| TCACCGCAGATTCATGTCAC+CGG | - | chr1_1:59408961-59408980 | Msa0032360:three_prime_UTR | 50.0% | |
| CATCTTGGAGGATTCATCGC+CGG | + | chr1_1:59408992-59409011 | None:intergenic | 50.0% | |
| !! | AAAGCGTTGGAACGCCCATT+CGG | + | chr1_1:59409028-59409047 | None:intergenic | 50.0% |
| ! | CAGCTTCTTGCAGAAAGCGT+TGG | + | chr1_1:59409041-59409060 | None:intergenic | 50.0% |
| GGAAGAAGAAGGAGAAGGTG+TGG | + | chr1_1:59409064-59409083 | None:intergenic | 50.0% | |
| TCCTCTGTTGCTGACAACAC+CGG | - | chr1_1:59409081-59409100 | Msa0032360:three_prime_UTR | 50.0% | |
| !! | ACCGTCTTTTGGTGCAGCAT+CGG | + | chr1_1:59409112-59409131 | None:intergenic | 50.0% |
| AGGTGGTCCATTGGGCAAAA+CGG | + | chr1_1:59409136-59409155 | None:intergenic | 50.0% | |
| GGATTTGAAAGCGGATGGAG+CGG | - | chr1_1:59410020-59410039 | Msa0032360:intron | 50.0% | |
| GATTTGAAAGCGGATGGAGC+GGG | - | chr1_1:59410021-59410040 | Msa0032360:intron | 50.0% | |
| AATGGTTAAAGTGGCCGCTC+CGG | + | chr1_1:59410058-59410077 | None:intergenic | 50.0% | |
| GAAGAACTGCAGTAAGGTGG+TGG | - | chr1_1:59410228-59410247 | Msa0032360:intron | 50.0% | |
| TGGGCCTAGGCCAATACATA+CGG | + | chr1_1:59410307-59410326 | None:intergenic | 50.0% | |
| GGCACGGCCAAACCAAAAAT+TGG | + | chr1_1:59410644-59410663 | None:intergenic | 50.0% | |
| GGATCTCAGCCCATTTCTGA+AGG | - | chr1_1:59410990-59411009 | Msa0032360:intron | 50.0% | |
| ATAGGTGGATCGCTTCCAGA+AGG | + | chr1_1:59411309-59411328 | None:intergenic | 50.0% | |
| GCCATTAGGCCATCAACAAG+TGG | - | chr1_1:59411402-59411421 | Msa0032360:intron | 50.0% | |
| ! | GTCTGATGATGACGAAGCTG+AGG | - | chr1_1:59411440-59411459 | Msa0032360:intron | 50.0% |
| TGGTTCATTAAGCAGGAGCG+AGG | + | chr1_1:59411660-59411679 | None:intergenic | 50.0% | |
| TGCTATACTGCTGGGTGTAG+CGG | - | chr1_1:59411858-59411877 | Msa0032360:intron | 50.0% | |
| ! | TGTTCTGAATCGCGGATAGC+GGG | + | chr1_1:59411991-59412010 | None:intergenic | 50.0% |
| CTTTCTTCTTCTTGAGCGCC+TGG | + | chr1_1:59412471-59412490 | None:intergenic | 50.0% | |
| GCGCTCAAGAAGAAGAAAGC+AGG | - | chr1_1:59412472-59412491 | Msa0032360:intron | 50.0% | |
| ATGGGGATGCCAGCATTTGA+TGG | - | chr1_1:59413448-59413467 | Msa0032360:intron | 50.0% | |
| TGATGTGGATCGTCTTGCAC+AGG | + | chr1_1:59413508-59413527 | None:intergenic | 50.0% | |
| ! | CATCTTCAGAAGCGGATTCG+TGG | - | chr1_1:59413703-59413722 | Msa0032360:intron | 50.0% |
| TCTTGTGGACCTCCTCCTAA+TGG | - | chr1_1:59413739-59413758 | Msa0032360:intron | 50.0% | |
| TACTGCTCTCCATTAGGAGG+AGG | + | chr1_1:59413751-59413770 | None:intergenic | 50.0% | |
| GTGCACCCCATATCTTCGTT+TGG | - | chr1_1:59413914-59413933 | Msa0032360:intron | 50.0% | |
| GCACCCCATATCTTCGTTTG+GGG | - | chr1_1:59413916-59413935 | Msa0032360:intron | 50.0% | |
| ! | TGTTTGGTTCATGCGAGGGA+AGG | - | chr1_1:59413991-59414010 | Msa0032360:CDS | 50.0% |
| ! | GTTTGGTTCATGCGAGGGAA+GGG | - | chr1_1:59413992-59414011 | Msa0032360:CDS | 50.0% |
| ! | TTTGGTTCATGCGAGGGAAG+GGG | - | chr1_1:59413993-59414012 | Msa0032360:CDS | 50.0% |
| TGCGGTGACCATAGGTTGTC+GGG | + | chr1_1:59408949-59408968 | None:intergenic | 55.0% | |
| CTGCGGTGACCATAGGTTGT+CGG | + | chr1_1:59408950-59408969 | None:intergenic | 55.0% | |
| !! | ACCGGTGTTGTCAGCAACAG+AGG | + | chr1_1:59409085-59409104 | None:intergenic | 55.0% |
| !! | TGGTGCAGCATCGGCAAAAC+CGG | + | chr1_1:59409103-59409122 | None:intergenic | 55.0% |
| GCCGATGCTGCACCAAAAGA+CGG | - | chr1_1:59409108-59409127 | Msa0032360:three_prime_UTR | 55.0% | |
| ! | GGCAAAACGGCACCGTCTTT+TGG | + | chr1_1:59409123-59409142 | None:intergenic | 55.0% |
| TTTGCCCAATGGACCACCTC+CGG | - | chr1_1:59409137-59409156 | Msa0032360:three_prime_UTR | 55.0% | |
| TCTTCGGAATCAACGGCCAC+CGG | + | chr1_1:59409159-59409178 | None:intergenic | 55.0% | |
| GCCTGTAGCAGCTGCTATTG+CGG | - | chr1_1:59409912-59409931 | Msa0032360:intron | 55.0% | |
| ACCGCAATAGCAGCTGCTAC+AGG | + | chr1_1:59409916-59409935 | None:intergenic | 55.0% | |
| TAGCAGCTGCTATTGCGGTG+CGG | - | chr1_1:59409917-59409936 | Msa0032360:intron | 55.0% | |
| !! | AGGAGAGGTAATGGGGGAGA+AGG | - | chr1_1:59410184-59410203 | Msa0032360:intron | 55.0% |
| ! | GTCCGCTCCGCACCAATTTT+TGG | - | chr1_1:59410629-59410648 | Msa0032360:intron | 55.0% |
| ATCAATGCGGAAATGCGGCG+AGG | + | chr1_1:59410665-59410684 | None:intergenic | 55.0% | |
| GAGGACTGTGGTCCATTCTC+AGG | + | chr1_1:59410954-59410973 | None:intergenic | 55.0% | |
| TCTGCACAGGCGGTATGGAA+GGG | + | chr1_1:59411368-59411387 | None:intergenic | 55.0% | |
| TTCTGCACAGGCGGTATGGA+AGG | + | chr1_1:59411369-59411388 | None:intergenic | 55.0% | |
| GAGGGGCTTCCATCAAATGC+TGG | + | chr1_1:59413460-59413479 | None:intergenic | 55.0% | |
| AAACAGCTCCTCCGTTGCAC+CGG | - | chr1_1:59413665-59413684 | Msa0032360:intron | 55.0% | |
| GATGTTCCAAGCTAGCCACC+CGG | + | chr1_1:59413687-59413706 | None:intergenic | 55.0% | |
| ! | CTTCAGAAGCGGATTCGTGG+TGG | - | chr1_1:59413706-59413725 | Msa0032360:intron | 55.0% |
| TTGGTTCATGCGAGGGAAGG+GGG | - | chr1_1:59413994-59414013 | Msa0032360:CDS | 55.0% | |
| GCGGTGACCATAGGTTGTCG+GGG | + | chr1_1:59408948-59408967 | None:intergenic | 60.0% | |
| CCGCCGGTGACATGAATCTG+CGG | + | chr1_1:59408967-59408986 | None:intergenic | 60.0% | |
| CCGCAGATTCATGTCACCGG+CGG | - | chr1_1:59408964-59408983 | Msa0032360:three_prime_UTR | 60.0% | |
| AGCGCTGCGACTCATCTTGG+AGG | + | chr1_1:59409004-59409023 | None:intergenic | 60.0% | |
| !! | GGAAGCGCTGCGACTCATCT+TGG | + | chr1_1:59409007-59409026 | None:intergenic | 60.0% |
| TGAGTCGCAGCGCTTCCGAA+TGG | - | chr1_1:59409010-59409029 | Msa0032360:three_prime_UTR | 60.0% | |
| GAGTCGCAGCGCTTCCGAAT+GGG | - | chr1_1:59409011-59409030 | Msa0032360:three_prime_UTR | 60.0% | |
| !!! | GACGGTGCCGTTTTGCCCAA+TGG | - | chr1_1:59409126-59409145 | Msa0032360:three_prime_UTR | 60.0% |
| GCTGAATCAGGCATGCGCTG+CGG | - | chr1_1:59409203-59409222 | Msa0032360:three_prime_UTR | 60.0% | |
| CGCTGCGGTTGCCATGACTA+GGG | - | chr1_1:59409218-59409237 | Msa0032360:three_prime_UTR | 60.0% | |
| TCTGACACGGATGGGTGTGG+TGG | + | chr1_1:59409959-59409978 | None:intergenic | 60.0% | |
| CACACCCATCCGTGTCAGAG+CGG | - | chr1_1:59409960-59409979 | Msa0032360:intron | 60.0% | |
| ! | TGTGCCGCTCTGACACGGAT+GGG | + | chr1_1:59409967-59409986 | None:intergenic | 60.0% |
| ! | CTGACTGTGCCGCTCTGACA+CGG | + | chr1_1:59409972-59409991 | None:intergenic | 60.0% |
| !! | GGTTGGTGCGGCCGATTTTG+TGG | - | chr1_1:59409999-59410018 | Msa0032360:intron | 60.0% |
| GGATGGAGCGGGTATGAAGC+AGG | - | chr1_1:59410032-59410051 | Msa0032360:intron | 60.0% | |
| AGGGATCGCAGGTGGTACCT+TGG | + | chr1_1:59411349-59411368 | None:intergenic | 60.0% | |
| GGTATGGAAGGGATCGCAGG+TGG | + | chr1_1:59411357-59411376 | None:intergenic | 60.0% | |
| ! | GCGCCTGGCTGACTCTCTAT+TGG | + | chr1_1:59412456-59412475 | None:intergenic | 60.0% |
| AACAGCTCCTCCGTTGCACC+GGG | - | chr1_1:59413666-59413685 | Msa0032360:intron | 60.0% | |
| AAGCTAGCCACCCGGTGCAA+CGG | + | chr1_1:59413679-59413698 | None:intergenic | 60.0% | |
| ! | CAGAAGCGGATTCGTGGTGG+CGG | - | chr1_1:59413709-59413728 | Msa0032360:intron | 60.0% |
| !! | GGTGGCGGTGTCGATTCTTG+TGG | - | chr1_1:59413724-59413743 | Msa0032360:intron | 60.0% |
| ATTCATGTCACCGGCGGCGC+CGG | - | chr1_1:59408970-59408989 | Msa0032360:three_prime_UTR | 65.0% | |
| GCCACCGGAGGTGGTCCATT+GGG | + | chr1_1:59409144-59409163 | None:intergenic | 65.0% | |
| GAATCAACGGCCACCGGAGG+TGG | + | chr1_1:59409153-59409172 | None:intergenic | 65.0% | |
| TCGGAATCAACGGCCACCGG+AGG | + | chr1_1:59409156-59409175 | None:intergenic | 65.0% | |
| GCGCTGCGGTTGCCATGACT+AGG | - | chr1_1:59409217-59409236 | Msa0032360:three_prime_UTR | 65.0% | |
| GGTGCGGCGCGGAAAAAGTG+AGG | - | chr1_1:59409933-59409952 | Msa0032360:intron | 65.0% | |
| CGCTCTGACACGGATGGGTG+TGG | + | chr1_1:59409962-59409981 | None:intergenic | 65.0% | |
| ! | CTGTGCCGCTCTGACACGGA+TGG | + | chr1_1:59409968-59409987 | None:intergenic | 65.0% |
| CGTGTCAGAGCGGCACAGTC+AGG | - | chr1_1:59409970-59409989 | Msa0032360:intron | 65.0% | |
| GTCAGAGCGGCACAGTCAGG+TGG | - | chr1_1:59409973-59409992 | Msa0032360:intron | 65.0% | |
| AGCGGCACAGTCAGGTGGTG+CGG | - | chr1_1:59409978-59409997 | Msa0032360:intron | 65.0% | |
| GCACAGTCAGGTGGTGCGGT+TGG | - | chr1_1:59409982-59410001 | Msa0032360:intron | 65.0% | |
| ! | GTCAGGTGGTGCGGTTGGTG+CGG | - | chr1_1:59409987-59410006 | Msa0032360:intron | 65.0% |
| GGAGCGGGTATGAAGCAGGC+CGG | - | chr1_1:59410036-59410055 | Msa0032360:intron | 65.0% | |
| GGGTATGAAGCAGGCCGGAG+CGG | - | chr1_1:59410041-59410060 | Msa0032360:intron | 65.0% | |
| TGCGGAAATGCGGCGAGGCA+CGG | + | chr1_1:59410660-59410679 | None:intergenic | 65.0% | |
| GGCGGTATGGAAGGGATCGC+AGG | + | chr1_1:59411360-59411379 | None:intergenic | 65.0% | |
| ! | GTTGCACCGGGTGGCTAGCT+TGG | - | chr1_1:59413678-59413697 | Msa0032360:intron | 65.0% |
| GCCCAATGGACCACCTCCGG+TGG | - | chr1_1:59409140-59409159 | Msa0032360:three_prime_UTR | 70.0% | |
| GGCCACCGGAGGTGGTCCAT+TGG | + | chr1_1:59409145-59409164 | None:intergenic | 70.0% | |
| GCTGCTATTGCGGTGCGGCG+CGG | - | chr1_1:59409922-59409941 | Msa0032360:intron | 70.0% | |
| AGCTCCTCCGTTGCACCGGG+TGG | - | chr1_1:59413669-59413688 | Msa0032360:intron | 70.0% | |
| CTAGCCACCCGGTGCAACGG+AGG | + | chr1_1:59413676-59413695 | None:intergenic | 70.0% | |
| GGATTCATCGCCGGCGCCGC+CGG | + | chr1_1:59408983-59409002 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 59408916 | 59414129 | 59408916 | ID=Msa0032360;Name=Msa0032360 |
| chr1_1 | mRNA | 59408916 | 59414129 | 59408916 | ID=Msa0032360-mRNA-1;Parent=Msa0032360;Name=Msa0032360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.83|0.71|1|0.66|0.71|7|358|406 |
| chr1_1 | exon | 59408916 | 59409675 | 59408916 | ID=Msa0032360-mRNA-1:exon:18341;Parent=Msa0032360-mRNA-1 |
| chr1_1 | exon | 59410284 | 59410409 | 59410284 | ID=Msa0032360-mRNA-1:exon:18340;Parent=Msa0032360-mRNA-1 |
| chr1_1 | exon | 59410525 | 59410600 | 59410525 | ID=Msa0032360-mRNA-1:exon:18339;Parent=Msa0032360-mRNA-1 |
| chr1_1 | exon | 59411528 | 59411747 | 59411528 | ID=Msa0032360-mRNA-1:exon:18338;Parent=Msa0032360-mRNA-1 |
| chr1_1 | exon | 59412034 | 59412130 | 59412034 | ID=Msa0032360-mRNA-1:exon:18337;Parent=Msa0032360-mRNA-1 |
| chr1_1 | exon | 59413806 | 59413918 | 59413806 | ID=Msa0032360-mRNA-1:exon:18336;Parent=Msa0032360-mRNA-1 |
| chr1_1 | exon | 59413943 | 59414129 | 59413943 | ID=Msa0032360-mRNA-1:exon:18335;Parent=Msa0032360-mRNA-1 |
| chr1_1 | CDS | 59413943 | 59414129 | 59413943 | ID=Msa0032360-mRNA-1:cds;Parent=Msa0032360-mRNA-1 |
| chr1_1 | CDS | 59413806 | 59413918 | 59413806 | ID=Msa0032360-mRNA-1:cds;Parent=Msa0032360-mRNA-1 |
| chr1_1 | CDS | 59412034 | 59412130 | 59412034 | ID=Msa0032360-mRNA-1:cds;Parent=Msa0032360-mRNA-1 |
| chr1_1 | CDS | 59411528 | 59411747 | 59411528 | ID=Msa0032360-mRNA-1:cds;Parent=Msa0032360-mRNA-1 |
| chr1_1 | CDS | 59410525 | 59410600 | 59410525 | ID=Msa0032360-mRNA-1:cds;Parent=Msa0032360-mRNA-1 |
| chr1_1 | CDS | 59410284 | 59410409 | 59410284 | ID=Msa0032360-mRNA-1:cds;Parent=Msa0032360-mRNA-1 |
| chr1_1 | CDS | 59409274 | 59409675 | 59409274 | ID=Msa0032360-mRNA-1:cds;Parent=Msa0032360-mRNA-1 |
| chr1_1 | three_prime_UTR | 59408916 | 59409273 | 59408916 | ID=Msa0032360-mRNA-1:three_prime_utr;Parent=Msa0032360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
