Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172360 | XP_013468984.1 | 93.961 | 414 | 15 | 2 | 1 | 406 | 1 | 412 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172360 | sp|Q99090|CPRF2_PETCR | 54.118 | 425 | 152 | 11 | 1 | 406 | 1 | 401 | 4.36e-119 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172360 | A0A072VN13 | 93.961 | 414 | 15 | 2 | 1 | 406 | 1 | 412 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0172360 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032360 | Msa0172360 | 0.971096 | 1.250861e-132 | -8.615850e-47 |
| Msa0172360 | Msa1390320 | 0.976099 | 3.502583e-141 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172360 | MtrunA17_Chr1g0190761 | 93.961 | 414 | 15 | 2 | 1 | 406 | 1 | 412 | 0.0 | 743 |
| Msa0172360 | MtrunA17_Chr7g0274141 | 54.839 | 403 | 153 | 9 | 1 | 393 | 1 | 384 | 1.30e-121 | 358 |
| Msa0172360 | MtrunA17_Chr3g0139301 | 52.593 | 135 | 57 | 4 | 169 | 299 | 96 | 227 | 1.90e-30 | 118 |
| Msa0172360 | MtrunA17_Chr1g0147491 | 59.504 | 121 | 45 | 2 | 172 | 292 | 143 | 259 | 4.79e-27 | 110 |
| Msa0172360 | MtrunA17_Chr3g0139571 | 59.459 | 74 | 30 | 0 | 201 | 274 | 1 | 74 | 1.55e-17 | 77.0 |
| Msa0172360 | MtrunA17_Chr4g0035414 | 41.304 | 92 | 54 | 0 | 200 | 291 | 28 | 119 | 3.84e-14 | 69.7 |
| Msa0172360 | MtrunA17_Chr7g0225661 | 41.346 | 104 | 55 | 1 | 171 | 274 | 59 | 156 | 7.99e-14 | 69.7 |
| Msa0172360 | MtrunA17_Chr8g0341311 | 45.055 | 91 | 45 | 1 | 184 | 274 | 61 | 146 | 8.13e-14 | 69.3 |
| Msa0172360 | MtrunA17_Chr3g0144941 | 38.043 | 92 | 57 | 0 | 200 | 291 | 28 | 119 | 1.41e-13 | 68.2 |
| Msa0172360 | MtrunA17_Chr6g0456061 | 47.297 | 74 | 39 | 0 | 202 | 275 | 90 | 163 | 2.13e-13 | 68.6 |
| Msa0172360 | MtrunA17_Chr8g0378901 | 31.092 | 119 | 79 | 1 | 173 | 291 | 9 | 124 | 1.83e-12 | 65.1 |
| Msa0172360 | MtrunA17_Chr1g0155551 | 30.000 | 160 | 92 | 4 | 172 | 318 | 7 | 159 | 2.04e-11 | 62.0 |
| Msa0172360 | MtrunA17_Chr8g0373571 | 43.529 | 85 | 46 | 1 | 186 | 270 | 248 | 330 | 2.28e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172360 | AT5G28770.2 | 45.340 | 397 | 129 | 14 | 1 | 394 | 1 | 312 | 2.04e-76 | 240 |
| Msa0172360 | AT5G28770.1 | 44.584 | 397 | 125 | 15 | 1 | 394 | 1 | 305 | 1.04e-71 | 228 |
| Msa0172360 | AT5G28770.3 | 49.275 | 276 | 89 | 9 | 1 | 275 | 1 | 226 | 5.29e-57 | 187 |
| Msa0172360 | AT4G02640.3 | 39.634 | 328 | 145 | 5 | 1 | 291 | 1 | 312 | 3.47e-49 | 172 |
| Msa0172360 | AT4G02640.2 | 39.634 | 328 | 145 | 5 | 1 | 291 | 1 | 312 | 4.04e-49 | 172 |
| Msa0172360 | AT4G02640.4 | 39.634 | 328 | 139 | 5 | 1 | 291 | 1 | 306 | 8.64e-49 | 171 |
| Msa0172360 | AT4G02640.1 | 39.634 | 328 | 139 | 5 | 1 | 291 | 1 | 306 | 1.15e-48 | 171 |
| Msa0172360 | AT3G54620.1 | 38.965 | 367 | 143 | 14 | 1 | 314 | 1 | 339 | 6.67e-44 | 157 |
| Msa0172360 | AT5G24800.1 | 44.444 | 189 | 92 | 5 | 131 | 310 | 51 | 235 | 4.59e-37 | 136 |
| Msa0172360 | AT5G28770.4 | 45.643 | 241 | 72 | 10 | 1 | 236 | 1 | 187 | 3.37e-34 | 127 |
| Msa0172360 | AT3G54620.3 | 37.057 | 367 | 133 | 16 | 1 | 314 | 1 | 322 | 3.48e-29 | 117 |
| Msa0172360 | AT2G18160.1 | 41.758 | 91 | 53 | 0 | 194 | 284 | 23 | 113 | 3.72e-14 | 70.5 |
| Msa0172360 | AT2G04038.1 | 43.617 | 94 | 48 | 1 | 181 | 274 | 58 | 146 | 6.54e-13 | 67.0 |
| Msa0172360 | AT1G75390.1 | 36.522 | 115 | 68 | 1 | 197 | 311 | 36 | 145 | 9.78e-13 | 66.6 |
| Msa0172360 | AT3G30530.1 | 37.864 | 103 | 60 | 1 | 172 | 274 | 55 | 153 | 2.82e-12 | 65.1 |
| Msa0172360 | AT1G13600.1 | 45.333 | 75 | 41 | 0 | 200 | 274 | 84 | 158 | 9.45e-12 | 64.3 |
| Msa0172360 | AT3G62420.1 | 32.692 | 104 | 60 | 1 | 199 | 302 | 22 | 115 | 1.43e-11 | 62.4 |
| Msa0172360 | AT5G15830.1 | 50.000 | 66 | 27 | 1 | 184 | 249 | 62 | 121 | 5.63e-11 | 61.6 |
Find 148 sgRNAs with CRISPR-Local
Find 377 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATGATCCACTTGTTGA+TGG | 0.223100 | 1_4:-57392881 | None:intergenic |
| GCATCTTTATCTTGTAATAT+AGG | 0.256635 | 1_4:-57392794 | None:intergenic |
| CCGCAGAATCAGTGTACTTT+TGG | 0.261444 | 1_4:-57394162 | None:intergenic |
| CCTACAACTGCTGCATTGTT+TGG | 0.276575 | 1_4:-57395095 | None:intergenic |
| AATCAAACAAACTTGTTTCC+TGG | 0.281020 | 1_4:-57395573 | None:intergenic |
| TCCAACTTTAGTAGCATTAG+AGG | 0.290868 | 1_4:-57392440 | None:intergenic |
| TGCACCCCATATCTTCGTTT+GGG | 0.319723 | 1_4:+57395385 | Msa0172360:three_prime_UTR |
| TTGATTCAAACCTTCAGAAA+TGG | 0.321181 | 1_4:-57392470 | None:intergenic |
| AACAAGTTTGTTTGATTTGA+AGG | 0.331713 | 1_4:+57395579 | Msa0172360:three_prime_UTR |
| GCATTCCCCAAACGAAGATA+TGG | 0.348614 | 1_4:-57395391 | None:intergenic |
| TATGCAGGATCTGTTCCTTC+TGG | 0.364918 | 1_4:+57392761 | Msa0172360:intron |
| ACTTATTCCCTCAAAATGTT+TGG | 0.368104 | 1_4:+57395445 | Msa0172360:three_prime_UTR |
| GCAATTTACTGCTCTCCATT+AGG | 0.372962 | 1_4:-57395224 | None:intergenic |
| CTTTCTTCTTCTTGAGCGCC+TGG | 0.376215 | 1_4:-57393938 | None:intergenic |
| GTTGCACCGGGTGGCTAGCT+TGG | 0.383977 | 1_4:+57395148 | Msa0172360:CDS |
| GTGCACCCCATATCTTCGTT+TGG | 0.386929 | 1_4:+57395384 | Msa0172360:three_prime_UTR |
| CATAGACTTTAATGTATAAG+AGG | 0.389564 | 1_4:-57395421 | None:intergenic |
| TGCGGTGACCATAGGTTGTC+GGG | 0.393062 | 1_4:-57390416 | None:intergenic |
| ACTAAAGCAACCACAAGATA+TGG | 0.405332 | 1_4:-57395246 | None:intergenic |
| CCAAACAATGCAGCAGTTGT+AGG | 0.408840 | 1_4:+57395095 | Msa0172360:CDS |
| TGATTCAAACCTTCAGAAAT+GGG | 0.409793 | 1_4:-57392469 | None:intergenic |
| TCTTGTGGACCTCCTCCTAA+TGG | 0.410328 | 1_4:+57395209 | Msa0172360:CDS |
| GTCAAGAAGTTATTCTTGTC+TGG | 0.411500 | 1_4:+57395267 | Msa0172360:three_prime_UTR |
| CCGTTGATTCCGAAGAATAT+CGG | 0.415030 | 1_4:+57390633 | Msa0172360:CDS |
| TCCTCTAATGCTACTAAAGT+TGG | 0.420756 | 1_4:+57392439 | Msa0172360:CDS |
| ATGGGGATGCCAGCATTTGA+TGG | 0.424587 | 1_4:+57394918 | Msa0172360:CDS |
| GCAGGCTCATTTAACTGAGT+TGG | 0.425028 | 1_4:+57393960 | Msa0172360:CDS |
| GCGCCTGGCTGACTCTCTAT+TGG | 0.428094 | 1_4:-57393923 | None:intergenic |
| ATTCATGTCACCGGCGGCGC+CGG | 0.438697 | 1_4:+57390440 | Msa0172360:CDS |
| CTTTAGGTTTCACAATTAAG+AGG | 0.441246 | 1_4:+57394100 | Msa0172360:intron |
| GAGACTGTGAAAAGAGTTAC+CGG | 0.441519 | 1_4:+57394855 | Msa0172360:CDS |
| CAGAACAGCCCGATATTCTT+CGG | 0.443037 | 1_4:-57390642 | None:intergenic |
| TCCACTTGTTGATGGCCTAA+TGG | 0.446126 | 1_4:-57392873 | None:intergenic |
| GGAAGCGCTGCGACTCATCT+TGG | 0.448544 | 1_4:-57390474 | None:intergenic |
| GAGGACTGTGGTCCATTCTC+AGG | 0.449150 | 1_4:-57392421 | None:intergenic |
| GCCACCGGAGGTGGTCCATT+GGG | 0.449839 | 1_4:-57390611 | None:intergenic |
| CGTTGATTCCGAAGAATATC+GGG | 0.456409 | 1_4:+57390634 | Msa0172360:CDS |
| AAACAGCTCCTCCGTTGCAC+CGG | 0.457579 | 1_4:+57395135 | Msa0172360:CDS |
| TTTGCCCAATGGACCACCTC+CGG | 0.460821 | 1_4:+57390607 | Msa0172360:CDS |
| GGCGGTATGGAAGGGATCGC+AGG | 0.461844 | 1_4:-57392827 | None:intergenic |
| GCGCTGCGGTTGCCATGACT+AGG | 0.462989 | 1_4:+57390687 | Msa0172360:CDS |
| TCTGAAGAGTAAGCTGAATC+AGG | 0.465092 | 1_4:+57390661 | Msa0172360:CDS |
| GAATCAACGGCCACCGGAGG+TGG | 0.465283 | 1_4:-57390620 | None:intergenic |
| GTTTGGTTCATGCGAGGGAA+GGG | 0.469923 | 1_4:+57395462 | Msa0172360:three_prime_UTR |
| AAAGATCTTAAAGATACTAC+TGG | 0.477076 | 1_4:+57395512 | Msa0172360:three_prime_UTR |
| GGCCACCGGAGGTGGTCCAT+TGG | 0.477571 | 1_4:-57390612 | None:intergenic |
| ATGAGAGTCAACAATGGGTT+GGG | 0.479222 | 1_4:+57395044 | Msa0172360:CDS |
| TTCTGCACAGGCGGTATGGA+AGG | 0.484341 | 1_4:-57392836 | None:intergenic |
| GGATTCATCGCCGGCGCCGC+CGG | 0.486207 | 1_4:-57390450 | None:intergenic |
| CATTCCCCAAACGAAGATAT+GGG | 0.490546 | 1_4:-57395390 | None:intergenic |
| ATGCCTGACATGTCATCAAT+GGG | 0.494648 | 1_4:+57394900 | Msa0172360:CDS |
| CAGCTTCTTGCAGAAAGCGT+TGG | 0.498650 | 1_4:-57390508 | None:intergenic |
| GAGTCGCAGCGCTTCCGAAT+GGG | 0.498693 | 1_4:+57390481 | Msa0172360:CDS |
| AAAGCGTTGGAACGCCCATT+CGG | 0.499920 | 1_4:-57390495 | None:intergenic |
| ACGAAATCCCCGACAACCTA+TGG | 0.501904 | 1_4:+57390408 | Msa0172360:CDS |
| TTTGGTTCATGCGAGGGAAG+GGG | 0.506130 | 1_4:+57395463 | Msa0172360:three_prime_UTR |
| TCTTCGGAATCAACGGCCAC+CGG | 0.506977 | 1_4:-57390626 | None:intergenic |
| CATTGCAAATCAATTTAATG+AGG | 0.507385 | 1_4:+57395339 | Msa0172360:three_prime_UTR |
| ATCCCCATTGATGACATGTC+AGG | 0.511654 | 1_4:-57394903 | None:intergenic |
| TGTTTGGTTCATGCGAGGGA+AGG | 0.519821 | 1_4:+57395461 | Msa0172360:three_prime_UTR |
| CTGCGGTGACCATAGGTTGT+CGG | 0.521113 | 1_4:-57390417 | None:intergenic |
| CATCTTCAGAAGCGGATTCG+TGG | 0.522135 | 1_4:+57395173 | Msa0172360:CDS |
| TGCATCTGCTGAATTGTCTG+AGG | 0.523554 | 1_4:-57394946 | None:intergenic |
| GCATCTGCTGAATTGTCTGA+GGG | 0.526766 | 1_4:-57394945 | None:intergenic |
| GAGGGGCTTCCATCAAATGC+TGG | 0.527926 | 1_4:-57394927 | None:intergenic |
| TTCCAACAAACAACATGGAT+AGG | 0.529412 | 1_4:+57390372 | None:intergenic |
| AACAGCTCCTCCGTTGCACC+GGG | 0.530036 | 1_4:+57395136 | Msa0172360:CDS |
| CATGCCTGACATGTCATCAA+TGG | 0.535358 | 1_4:+57394899 | Msa0172360:CDS |
| AGGTGGTCCATTGGGCAAAA+CGG | 0.537410 | 1_4:-57390603 | None:intergenic |
| ATGAAACAATGGGTTCAATC+CGG | 0.537486 | 1_4:-57394874 | None:intergenic |
| TACTGCTCTCCATTAGGAGG+AGG | 0.537865 | 1_4:-57395218 | None:intergenic |
| AAGCTAGCCACCCGGTGCAA+CGG | 0.537945 | 1_4:-57395146 | None:intergenic |
| CAGGCATGACATGAAACAAT+GGG | 0.540921 | 1_4:-57394884 | None:intergenic |
| TATGAGAGTCAACAATGGGT+TGG | 0.540959 | 1_4:+57395043 | Msa0172360:CDS |
| AAGAGGTGAAAATTCTACCT+TGG | 0.544049 | 1_4:+57394117 | Msa0172360:CDS |
| AGTTGTAGGTGGGAACAAGA+TGG | 0.544585 | 1_4:+57395109 | Msa0172360:CDS |
| CGCTGCGGTTGCCATGACTA+GGG | 0.544605 | 1_4:+57390688 | Msa0172360:CDS |
| CTACTGACGTAAAACGAGTA+AGG | 0.544656 | 1_4:+57392963 | Msa0172360:CDS |
| GGATCTCAGCCCATTTCTGA+AGG | 0.545730 | 1_4:+57392460 | Msa0172360:CDS |
| GGCATAGGATTAATAGATGT+GGG | 0.545925 | 1_4:-57395011 | None:intergenic |
| TCCTCTGTTGCTGACAACAC+CGG | 0.546501 | 1_4:+57390551 | Msa0172360:CDS |
| TGAGTCGCAGCGCTTCCGAA+TGG | 0.548231 | 1_4:+57390480 | Msa0172360:CDS |
| TTGGTTCATGCGAGGGAAGG+GGG | 0.549040 | 1_4:+57395464 | Msa0172360:three_prime_UTR |
| CATGAATCTGCGGTGACCAT+AGG | 0.554146 | 1_4:-57390424 | None:intergenic |
| AACAATGCAGCAGTTGTAGG+TGG | 0.555285 | 1_4:+57395098 | Msa0172360:CDS |
| TCTTTATCTTGTAATATAGG+TGG | 0.555696 | 1_4:-57392791 | None:intergenic |
| CAGAAGCGGATTCGTGGTGG+CGG | 0.557372 | 1_4:+57395179 | Msa0172360:CDS |
| GGAAGAAGAAGGAGAAGGTG+TGG | 0.558163 | 1_4:-57390531 | None:intergenic |
| TGGTCCATTCTCAGGAAAAG+TGG | 0.558279 | 1_4:-57392413 | None:intergenic |
| GTTGTAGGTGGGAACAAGAT+GGG | 0.562961 | 1_4:+57395110 | Msa0172360:CDS |
| TTTCCAATAGAGAGTCAGCC+AGG | 0.566133 | 1_4:+57393920 | Msa0172360:CDS |
| CAGTAAATTGCCATATCTTG+TGG | 0.566791 | 1_4:+57395236 | Msa0172360:exon |
| CCGATATTCTTCGGAATCAA+CGG | 0.569768 | 1_4:-57390633 | None:intergenic |
| CTAGCCACCCGGTGCAACGG+AGG | 0.575800 | 1_4:-57395143 | None:intergenic |
| AGGGATCGCAGGTGGTACCT+TGG | 0.576379 | 1_4:-57392816 | None:intergenic |
| TCAGCAACAGAGGAAGAAGA+AGG | 0.578164 | 1_4:-57390542 | None:intergenic |
| GCGCTCAAGAAGAAGAAAGC+AGG | 0.578810 | 1_4:+57393942 | Msa0172360:CDS |
| ACCGGTGTTGTCAGCAACAG+AGG | 0.579200 | 1_4:-57390552 | None:intergenic |
| TCTGCACAGGCGGTATGGAA+GGG | 0.579471 | 1_4:-57392835 | None:intergenic |
| TTTAACTGAGTTGGAAACAC+AGG | 0.582001 | 1_4:+57393969 | Msa0172360:CDS |
| TGGCATAGGATTAATAGATG+TGG | 0.582245 | 1_4:-57395012 | None:intergenic |
| ATAGACTTTAATGTATAAGA+GGG | 0.582705 | 1_4:-57395420 | None:intergenic |
| GCCCAATGGACCACCTCCGG+TGG | 0.585880 | 1_4:+57390610 | Msa0172360:CDS |
| TCCAACAAACAACATGGATA+GGG | 0.587093 | 1_4:+57390373 | None:intergenic |
| CATTCTCAGGAAAAGTGGCT+AGG | 0.587934 | 1_4:-57392408 | None:intergenic |
| ATTTACTGCTCTCCATTAGG+AGG | 0.588321 | 1_4:-57395221 | None:intergenic |
| GACATATATGATTGACAGCA+CGG | 0.588439 | 1_4:+57392937 | Msa0172360:CDS |
| CAAAATGTTTGGTTCATGCG+AGG | 0.590432 | 1_4:+57395456 | Msa0172360:three_prime_UTR |
| AAAATGTTTGGTTCATGCGA+GGG | 0.590503 | 1_4:+57395457 | Msa0172360:three_prime_UTR |
| TCAGGCATGACATGAAACAA+TGG | 0.593558 | 1_4:-57394885 | None:intergenic |
| GCACCCCATATCTTCGTTTG+GGG | 0.594035 | 1_4:+57395386 | Msa0172360:three_prime_UTR |
| ATTACAAGATAAAGATGCCA+AGG | 0.595359 | 1_4:+57392799 | Msa0172360:CDS |
| GTCTGATGATGACGAAGCTG+AGG | 0.596500 | 1_4:+57392910 | Msa0172360:CDS |
| AGCTCCTCCGTTGCACCGGG+TGG | 0.597935 | 1_4:+57395139 | Msa0172360:CDS |
| ATGATATGAGAGTCAACAAT+GGG | 0.599172 | 1_4:+57395039 | Msa0172360:CDS |
| TGTTGAAACGTTAAGAGCAA+AGG | 0.608038 | 1_4:+57394210 | Msa0172360:CDS |
| GCCATTAGGCCATCAACAAG+TGG | 0.609169 | 1_4:+57392872 | Msa0172360:CDS |
| AGCGCTGCGACTCATCTTGG+AGG | 0.610597 | 1_4:-57390471 | None:intergenic |
| TCGGAATCAACGGCCACCGG+AGG | 0.611990 | 1_4:-57390623 | None:intergenic |
| GCTTGGAACATCTTCAGAAG+CGG | 0.612188 | 1_4:+57395165 | Msa0172360:CDS |
| CTCATATCATGACATGGCAT+AGG | 0.623120 | 1_4:-57395026 | None:intergenic |
| TCTGATGATGACGAAGCTGA+GGG | 0.626334 | 1_4:+57392911 | Msa0172360:CDS |
| CATCTTGGAGGATTCATCGC+CGG | 0.632617 | 1_4:-57390459 | None:intergenic |
| GATGTTCCAAGCTAGCCACC+CGG | 0.633541 | 1_4:-57395154 | None:intergenic |
| TCACCGCAGATTCATGTCAC+CGG | 0.635057 | 1_4:+57390431 | Msa0172360:CDS |
| ACAGAGGAAGAAGAAGGAGA+AGG | 0.637590 | 1_4:-57390536 | None:intergenic |
| GGTATGGAAGGGATCGCAGG+TGG | 0.640990 | 1_4:-57392824 | None:intergenic |
| CCAAAAGTACACTGATTCTG+CGG | 0.642477 | 1_4:+57394162 | Msa0172360:CDS |
| GCTGAATCAGGCATGCGCTG+CGG | 0.643579 | 1_4:+57390673 | Msa0172360:CDS |
| TGATGTGGATCGTCTTGCAC+AGG | 0.644197 | 1_4:-57394975 | None:intergenic |
| ACAATGCAGCAGTTGTAGGT+GGG | 0.644613 | 1_4:+57395099 | Msa0172360:CDS |
| ATAGGTGGATCGCTTCCAGA+AGG | 0.645523 | 1_4:-57392776 | None:intergenic |
| TGATGGCCTAATGGCAACAA+TGG | 0.646272 | 1_4:-57392864 | None:intergenic |
| GGTTGATAGAAATGATGATG+TGG | 0.646871 | 1_4:-57394990 | None:intergenic |
| GCGGTGACCATAGGTTGTCG+GGG | 0.657758 | 1_4:-57390415 | None:intergenic |
| ATCAGTAAGACGCTTTACCA+AGG | 0.660921 | 1_4:-57394134 | None:intergenic |
| TTGACTCTCATATCATGACA+TGG | 0.663706 | 1_4:-57395032 | None:intergenic |
| CTTCAGAAGCGGATTCGTGG+TGG | 0.671591 | 1_4:+57395176 | Msa0172360:CDS |
| CCGCCGGTGACATGAATCTG+CGG | 0.671643 | 1_4:-57390434 | None:intergenic |
| CCGCAGATTCATGTCACCGG+CGG | 0.672407 | 1_4:+57390434 | Msa0172360:CDS |
| TTAGTAGCATTAGAGGACTG+TGG | 0.673158 | 1_4:-57392433 | None:intergenic |
| CATCTGCTGAATTGTCTGAG+GGG | 0.674812 | 1_4:-57394944 | None:intergenic |
| CATGATATGAGAGTCAACAA+TGG | 0.678198 | 1_4:+57395038 | Msa0172360:CDS |
| GGTGGCGGTGTCGATTCTTG+TGG | 0.683085 | 1_4:+57395194 | Msa0172360:CDS |
| ATTCCCCAAACGAAGATATG+GGG | 0.689146 | 1_4:-57395389 | None:intergenic |
| CATGGATAGGGTATTCTCAG+TGG | 0.691390 | 1_4:+57390385 | None:intergenic |
| CTGACGTAAAACGAGTAAGG+AGG | 0.694894 | 1_4:+57392966 | Msa0172360:CDS |
| TGCCTGACATGTCATCAATG+GGG | 0.791811 | 1_4:+57394901 | Msa0172360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAACTAAATTTCAAA+AGG | - | chr1_4:57391212-57391231 | None:intergenic | 10.0% |
| !! | AAAAAAATATTTATTAACCA+AGG | - | chr1_4:57392049-57392068 | None:intergenic | 10.0% |
| !!! | CTTACAAATAATATAATTTT+TGG | - | chr1_4:57393753-57393772 | None:intergenic | 10.0% |
| !!! | TTTTTGTTATTTTTGCATTA+TGG | + | chr1_4:57390829-57390848 | Msa0172360:intron | 15.0% |
| !!! | TTTTGTTATTTTTGCATTAT+GGG | + | chr1_4:57390830-57390849 | Msa0172360:intron | 15.0% |
| !! | AAAATAATGCAAAAAGAAAA+TGG | - | chr1_4:57391832-57391851 | None:intergenic | 15.0% |
| !! | AAAAAGTTTAATGACAATAT+TGG | + | chr1_4:57392559-57392578 | Msa0172360:intron | 15.0% |
| !! | TTGAGAGAATAAAAAAAAAA+AGG | - | chr1_4:57393277-57393296 | None:intergenic | 15.0% |
| !! | TTGTTATAACAAATAAAAAG+TGG | - | chr1_4:57393644-57393663 | None:intergenic | 15.0% |
| !!! | ATAATTTTTGGATAAAACTT+GGG | - | chr1_4:57393741-57393760 | None:intergenic | 15.0% |
| !!! | TATAATTTTTGGATAAAACT+TGG | - | chr1_4:57393742-57393761 | None:intergenic | 15.0% |
| !! | ACAATAACAAAGTAAAAAAA+AGG | - | chr1_4:57393819-57393838 | None:intergenic | 15.0% |
| !!! | TGTGTATTTTATTTTATATC+TGG | + | chr1_4:57393994-57394013 | Msa0172360:intron | 15.0% |
| !! | TTTGTCTTATATTATACTTT+AGG | + | chr1_4:57394084-57394103 | Msa0172360:intron | 15.0% |
| !! | ACTAACTAATTAATATGAAA+TGG | + | chr1_4:57394527-57394546 | Msa0172360:intron | 15.0% |
| !! | TCACATTGTATTAACAAAAA+GGG | - | chr1_4:57390729-57390748 | None:intergenic | 20.0% |
| !! | TTCACATTGTATTAACAAAA+AGG | - | chr1_4:57390730-57390749 | None:intergenic | 20.0% |
| !! | AAATTAGAATCGATTATAAC+TGG | + | chr1_4:57390928-57390947 | Msa0172360:intron | 20.0% |
| !! | AATTAGAATCGATTATAACT+GGG | + | chr1_4:57390929-57390948 | Msa0172360:intron | 20.0% |
| !!! | TTTTGTGTTTTTAATGCAAA+GGG | + | chr1_4:57391022-57391041 | Msa0172360:intron | 20.0% |
| !!! | AATTCAAACTTCTATGATTT+TGG | - | chr1_4:57391078-57391097 | None:intergenic | 20.0% |
| !!! | TTATTCTAAAAAGACGTTTA+TGG | - | chr1_4:57391323-57391342 | None:intergenic | 20.0% |
| !!! | ATTTTTTCGTATAGAAACTT+TGG | + | chr1_4:57391847-57391866 | Msa0172360:intron | 20.0% |
| !! | ATCTCAATAAATTACTTAAC+AGG | - | chr1_4:57392673-57392692 | None:intergenic | 20.0% |
| !! | ACATTGATATAATTGCAATT+TGG | + | chr1_4:57393047-57393066 | Msa0172360:intron | 20.0% |
| !!! | AACAAACTTTGAGAAAATTA+TGG | + | chr1_4:57393659-57393678 | Msa0172360:intron | 20.0% |
| !!! | GAAGTGTTTAGTAAAATTAT+CGG | + | chr1_4:57394500-57394519 | Msa0172360:intron | 20.0% |
| !! | ATAGACTTTAATGTATAAGA+GGG | - | chr1_4:57395423-57395442 | None:intergenic | 20.0% |
| ! | CACATTGTATTAACAAAAAG+GGG | - | chr1_4:57390728-57390747 | None:intergenic | 25.0% |
| ! | CAAACACAAATCAAAATGAT+TGG | - | chr1_4:57390759-57390778 | None:intergenic | 25.0% |
| !!! | CAATCATTTTGATTTGTGTT+TGG | + | chr1_4:57390757-57390776 | Msa0172360:intron | 25.0% |
| !!! | GTTGTTTTAATTTAGCTGAT+TGG | + | chr1_4:57390893-57390912 | Msa0172360:intron | 25.0% |
| ! | ATTATAACTGGGAAAATAAC+TGG | + | chr1_4:57390940-57390959 | Msa0172360:intron | 25.0% |
| ! | CATTCATGTTCTATGAATTT+AGG | - | chr1_4:57390997-57391016 | None:intergenic | 25.0% |
| !!! | CTTTTGTGTTTTTAATGCAA+AGG | + | chr1_4:57391021-57391040 | Msa0172360:intron | 25.0% |
| ! | AAGATAATCAATCCGAATTT+CGG | - | chr1_4:57391273-57391292 | None:intergenic | 25.0% |
| ! | GATTATCTTATCCAAATGAA+AGG | + | chr1_4:57391284-57391303 | Msa0172360:intron | 25.0% |
| ! | AAAAAGAATAGTTTCACAAC+CGG | - | chr1_4:57391876-57391895 | None:intergenic | 25.0% |
| !! | TTTCATATTTTCTTAGTCCT+TGG | + | chr1_4:57392029-57392048 | Msa0172360:intron | 25.0% |
| !!! | TATGATCCATTACTTTTACA+TGG | + | chr1_4:57392267-57392286 | Msa0172360:intron | 25.0% |
| ! | TTCAAACCATGTAAAAGTAA+TGG | - | chr1_4:57392276-57392295 | None:intergenic | 25.0% |
| ! | ATGTGAAAATATCAGCAAAA+TGG | - | chr1_4:57392317-57392336 | None:intergenic | 25.0% |
| ! | ACTTTCCTCATTTAATCTTT+CGG | - | chr1_4:57392520-57392539 | None:intergenic | 25.0% |
| !!! | GGTTGGTAAAAGAAAATAAA+CGG | - | chr1_4:57392652-57392671 | None:intergenic | 25.0% |
| ! | CAATAAATTACTTAACAGGT+TGG | - | chr1_4:57392669-57392688 | None:intergenic | 25.0% |
| ! | GTAATTTATTGAGATGCTTT+AGG | + | chr1_4:57392678-57392697 | Msa0172360:intron | 25.0% |
| ! | TATTTGACACAATTCAACAA+GGG | - | chr1_4:57392733-57392752 | None:intergenic | 25.0% |
| ! | ATATTTGACACAATTCAACA+AGG | - | chr1_4:57392734-57392753 | None:intergenic | 25.0% |
| ! | TCAAATATATCTATCTATGC+AGG | + | chr1_4:57392746-57392765 | Msa0172360:intron | 25.0% |
| ! | TCTTTATCTTGTAATATAGG+TGG | - | chr1_4:57392794-57392813 | None:intergenic | 25.0% |
| ! | GCATCTTTATCTTGTAATAT+AGG | - | chr1_4:57392797-57392816 | None:intergenic | 25.0% |
| !! | AAAAAAAAAAAGGTTCTAGC+AGG | - | chr1_4:57393267-57393286 | None:intergenic | 25.0% |
| !! | CTGCAAGTTGAAAAAAATTA+TGG | + | chr1_4:57393564-57393583 | Msa0172360:intron | 25.0% |
| ! | TTGAGAAAATTATGGATTTG+AGG | + | chr1_4:57393667-57393686 | Msa0172360:intron | 25.0% |
| ! | TCTGATCTGTGAAAAAAATT+AGG | - | chr1_4:57393794-57393813 | None:intergenic | 25.0% |
| !!! | CTAATGACATCTATTTTTTC+AGG | + | chr1_4:57393893-57393912 | Msa0172360:intron | 25.0% |
| !! | CTTTCATTTTAAGCTCTATT+TGG | - | chr1_4:57394751-57394770 | None:intergenic | 25.0% |
| !! | TCCATGTTATTCTTTCTTTT+AGG | + | chr1_4:57394818-57394837 | Msa0172360:intron | 25.0% |
| ! | ACCTAAAAGAAAGAATAACA+TGG | - | chr1_4:57394822-57394841 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTTTAGGTAAAGA+TGG | + | chr1_4:57394827-57394846 | Msa0172360:intron | 25.0% |
| ! | CATTGCAAATCAATTTAATG+AGG | + | chr1_4:57395339-57395358 | Msa0172360:three_prime_UTR | 25.0% |
| ! | CATAGACTTTAATGTATAAG+AGG | - | chr1_4:57395424-57395443 | None:intergenic | 25.0% |
| ! | AAAGATCTTAAAGATACTAC+TGG | + | chr1_4:57395512-57395531 | Msa0172360:three_prime_UTR | 25.0% |
| !! | TACTAGTTTGAAAAATTTCC+AGG | + | chr1_4:57395555-57395574 | Msa0172360:three_prime_UTR | 25.0% |
| !! | CTATGATTTTGGAAGTGAAA+GGG | - | chr1_4:57391067-57391086 | None:intergenic | 30.0% |
| !! | TCTATGATTTTGGAAGTGAA+AGG | - | chr1_4:57391068-57391087 | None:intergenic | 30.0% |
| ! | TTCTTCTTTTAGTATTTCCC+TGG | + | chr1_4:57391123-57391142 | Msa0172360:intron | 30.0% |
| GGCTTACAAATTCCTATTAA+CGG | - | chr1_4:57391191-57391210 | None:intergenic | 30.0% | |
| TTATCCAAATGAAAGGTCTT+TGG | + | chr1_4:57391291-57391310 | Msa0172360:intron | 30.0% | |
| GATAAGATTTCCAGAGAAAA+TGG | - | chr1_4:57391546-57391565 | None:intergenic | 30.0% | |
| CAAAGAAAAACGACATAAGA+AGG | + | chr1_4:57391634-57391653 | Msa0172360:intron | 30.0% | |
| !! | TTTCAAAGTACCGTATGTAT+TGG | + | chr1_4:57391764-57391783 | Msa0172360:intron | 30.0% |
| AAGACCCAATATTTAGATCT+GGG | - | chr1_4:57391796-57391815 | None:intergenic | 30.0% | |
| TAAGACCCAATATTTAGATC+TGG | - | chr1_4:57391797-57391816 | None:intergenic | 30.0% | |
| AAAAGAATAGTTTCACAACC+GGG | - | chr1_4:57391875-57391894 | None:intergenic | 30.0% | |
| AATAGCCATAGTTATCAATG+CGG | - | chr1_4:57392148-57392167 | None:intergenic | 30.0% | |
| ATTGCACAAAATGAAGTGTA+GGG | - | chr1_4:57392226-57392245 | None:intergenic | 30.0% | |
| AATTGCACAAAATGAAGTGT+AGG | - | chr1_4:57392227-57392246 | None:intergenic | 30.0% | |
| AATATCAGCAAAATGGAAGA+TGG | - | chr1_4:57392310-57392329 | None:intergenic | 30.0% | |
| TGTTTCTTACTCATTGCAAT+AGG | + | chr1_4:57392363-57392382 | Msa0172360:intron | 30.0% | |
| GTTTCTTACTCATTGCAATA+GGG | + | chr1_4:57392364-57392383 | Msa0172360:intron | 30.0% | |
| TGATTCAAACCTTCAGAAAT+GGG | - | chr1_4:57392472-57392491 | None:intergenic | 30.0% | |
| TTGATTCAAACCTTCAGAAA+TGG | - | chr1_4:57392473-57392492 | None:intergenic | 30.0% | |
| GAAAACCGAAAGATTAAATG+AGG | + | chr1_4:57392512-57392531 | Msa0172360:intron | 30.0% | |
| ATTACAAGATAAAGATGCCA+AGG | + | chr1_4:57392799-57392818 | Msa0172360:CDS | 30.0% | |
| AAAAAACCATTGTTGCCATT+AGG | + | chr1_4:57392858-57392877 | Msa0172360:CDS | 30.0% | |
| AACAAACTTCTAAATCACTC+TGG | - | chr1_4:57393091-57393110 | None:intergenic | 30.0% | |
| CTTAAAAAATTGCAGCCAAT+CGG | + | chr1_4:57393163-57393182 | Msa0172360:intron | 30.0% | |
| TATAAGATATTGACACCGAT+TGG | - | chr1_4:57393181-57393200 | None:intergenic | 30.0% | |
| ! | TTATGTGCAAACTGTTGATT+TGG | + | chr1_4:57393216-57393235 | Msa0172360:intron | 30.0% |
| TACAAAATGCAGTCAAATAG+CGG | + | chr1_4:57393392-57393411 | Msa0172360:intron | 30.0% | |
| TGAACATTCTAACTTCAAGA+GGG | - | chr1_4:57393508-57393527 | None:intergenic | 30.0% | |
| ATGAACATTCTAACTTCAAG+AGG | - | chr1_4:57393509-57393528 | None:intergenic | 30.0% | |
| !! | TTCCTTAGGTACTTTTTGTA+TGG | + | chr1_4:57393604-57393623 | Msa0172360:intron | 30.0% |
| !! | AACCATACAAAAAGTACCTA+AGG | - | chr1_4:57393609-57393628 | None:intergenic | 30.0% |
| TTATGGATTTGAGGAAATCA+TGG | + | chr1_4:57393676-57393695 | Msa0172360:intron | 30.0% | |
| ATTAGACATTGAACTAACCA+AGG | - | chr1_4:57393878-57393897 | None:intergenic | 30.0% | |
| ! | CTTTAGGTTTCACAATTAAG+AGG | + | chr1_4:57394100-57394119 | Msa0172360:intron | 30.0% |
| CAATGTAAATACATGAAGCA+GGG | - | chr1_4:57394241-57394260 | None:intergenic | 30.0% | |
| ! | AAAAACTGTGGCAAACATTT+TGG | + | chr1_4:57394268-57394287 | Msa0172360:intron | 30.0% |
| TCTTTCTAAACAAGTTCCTT+AGG | + | chr1_4:57394292-57394311 | Msa0172360:intron | 30.0% | |
| CTCTGTTAGGTAAAATATAG+CGG | + | chr1_4:57394404-57394423 | Msa0172360:intron | 30.0% | |
| ! | TAAGCTACTTGATAGCTTAT+AGG | + | chr1_4:57394435-57394454 | Msa0172360:intron | 30.0% |
| ! | AAGCTACTTGATAGCTTATA+GGG | + | chr1_4:57394436-57394455 | Msa0172360:intron | 30.0% |
| ! | ATTTTAAGCTCTATTTGGCA+AGG | - | chr1_4:57394746-57394765 | None:intergenic | 30.0% |
| ACAAATATCTGACATGTTTC+TGG | + | chr1_4:57394789-57394808 | Msa0172360:intron | 30.0% | |
| ATGATATGAGAGTCAACAAT+GGG | + | chr1_4:57395039-57395058 | Msa0172360:CDS | 30.0% | |
| ACTTATTCCCTCAAAATGTT+TGG | + | chr1_4:57395445-57395464 | Msa0172360:three_prime_UTR | 30.0% | |
| ! | GAATTTTATTGAAAGGGAGA+TGG | + | chr1_4:57395488-57395507 | Msa0172360:three_prime_UTR | 30.0% |
| ! | AATCAAACAAACTTGTTTCC+TGG | - | chr1_4:57395576-57395595 | None:intergenic | 30.0% |
| AAGCAAAAATACCCTAGTCA+TGG | - | chr1_4:57390702-57390721 | None:intergenic | 35.0% | |
| GATTTGTGTTTGGATCTGTT+TGG | + | chr1_4:57390767-57390786 | Msa0172360:intron | 35.0% | |
| ! | ATCTGTTTGGTTCATGTGTT+TGG | + | chr1_4:57390780-57390799 | Msa0172360:intron | 35.0% |
| ! | TGGTTCATGTGTTTGGTAAT+TGG | + | chr1_4:57390787-57390806 | Msa0172360:intron | 35.0% |
| ! | GGTTCATGTGTTTGGTAATT+GGG | + | chr1_4:57390788-57390807 | Msa0172360:intron | 35.0% |
| ! | TATGGGTTCTGATATTCTTC+TGG | + | chr1_4:57390847-57390866 | Msa0172360:intron | 35.0% |
| AGGGTAACCTTATAGTGAAT+TGG | + | chr1_4:57391041-57391060 | Msa0172360:intron | 35.0% | |
| !!! | CCTTTGCTTTTTCTACTGAT+AGG | - | chr1_4:57391151-57391170 | None:intergenic | 35.0% |
| CCTATCAGTAGAAAAAGCAA+AGG | + | chr1_4:57391148-57391167 | Msa0172360:intron | 35.0% | |
| ATCAGTAGAAAAAGCAAAGG+AGG | + | chr1_4:57391151-57391170 | Msa0172360:intron | 35.0% | |
| AAAAAGCAAAGGAGGATTGA+TGG | + | chr1_4:57391159-57391178 | Msa0172360:intron | 35.0% | |
| CGCTTTCAAATCCACAAAAT+CGG | - | chr1_4:57391483-57391502 | None:intergenic | 35.0% | |
| ! | CGATTTTGTGGATTTGAAAG+CGG | + | chr1_4:57391481-57391500 | Msa0172360:intron | 35.0% |
| TCCAGAGAAAATGGTTAAAG+TGG | - | chr1_4:57391537-57391556 | None:intergenic | 35.0% | |
| AAAAACGACATAAGAAGGAG+AGG | + | chr1_4:57391639-57391658 | Msa0172360:intron | 35.0% | |
| ACATAAGAAGGAGAGGTAAT+GGG | + | chr1_4:57391646-57391665 | Msa0172360:intron | 35.0% | |
| ! | GCTTTGACTTATGAGAAACT+AGG | + | chr1_4:57391720-57391739 | Msa0172360:intron | 35.0% |
| ! | TACATACGGTACTTTGAAAG+AGG | - | chr1_4:57391763-57391782 | None:intergenic | 35.0% |
| TAGGCCCAGATCTAAATATT+GGG | + | chr1_4:57391789-57391808 | Msa0172360:intron | 35.0% | |
| TAGTTATCAATGCGGAAATG+CGG | - | chr1_4:57392140-57392159 | None:intergenic | 35.0% | |
| ! | CATTTCCGCATTGATAACTA+TGG | + | chr1_4:57392140-57392159 | Msa0172360:intron | 35.0% |
| GATGACCAAAAGTAAAAGCA+AGG | - | chr1_4:57392185-57392204 | None:intergenic | 35.0% | |
| TCCTCTAATGCTACTAAAGT+TGG | + | chr1_4:57392439-57392458 | Msa0172360:CDS | 35.0% | |
| TCCAACTTTAGTAGCATTAG+AGG | - | chr1_4:57392443-57392462 | None:intergenic | 35.0% | |
| ! | AGGAAAGTTGATCAGATCTA+TGG | + | chr1_4:57392532-57392551 | Msa0172360:intron | 35.0% |
| TCCACCTCTAAATTACTCAT+GGG | - | chr1_4:57392586-57392605 | None:intergenic | 35.0% | |
| ATCCACCTCTAAATTACTCA+TGG | - | chr1_4:57392587-57392606 | None:intergenic | 35.0% | |
| !!! | ACAATGGTTTTTTTCTGCAC+AGG | - | chr1_4:57392851-57392870 | None:intergenic | 35.0% |
| GACATATATGATTGACAGCA+CGG | + | chr1_4:57392937-57392956 | Msa0172360:CDS | 35.0% | |
| ! | TTACTCGTTTTACGTCAGTA+GGG | - | chr1_4:57392964-57392983 | None:intergenic | 35.0% |
| !! | TTTTAAGTATGCCTGTCACT+TGG | - | chr1_4:57393150-57393169 | None:intergenic | 35.0% |
| TTGTTAGATAGCAGCTATAG+TGG | + | chr1_4:57393305-57393324 | Msa0172360:intron | 35.0% | |
| ! | GTTTGAAATGTTCTGAATCG+CGG | - | chr1_4:57393469-57393488 | None:intergenic | 35.0% |
| AAACTTAGACACGTTTCCTT+AGG | + | chr1_4:57393590-57393609 | Msa0172360:intron | 35.0% | |
| ! | TTTAACTGAGTTGGAAACAC+AGG | + | chr1_4:57393969-57393988 | Msa0172360:CDS | 35.0% |
| CAACAGAAACATTGAAGAGA+GGG | - | chr1_4:57394031-57394050 | None:intergenic | 35.0% | |
| AAGAGGTGAAAATTCTACCT+TGG | + | chr1_4:57394117-57394136 | Msa0172360:CDS | 35.0% | |
| TGTTGAAACGTTAAGAGCAA+AGG | + | chr1_4:57394210-57394229 | Msa0172360:CDS | 35.0% | |
| GCAATGTAAATACATGAAGC+AGG | - | chr1_4:57394242-57394261 | None:intergenic | 35.0% | |
| CTTCATGTATTTACATTGCC+TGG | + | chr1_4:57394243-57394262 | Msa0172360:intron | 35.0% | |
| !!! | TTTTTTGTAAGCCAGACCTA+AGG | - | chr1_4:57394311-57394330 | None:intergenic | 35.0% |
| AACTAAATCAACGCTCTGTT+AGG | + | chr1_4:57394391-57394410 | Msa0172360:intron | 35.0% | |
| ! | GGGTATAAGCTAGTTGATAT+AGG | + | chr1_4:57394456-57394475 | Msa0172360:intron | 35.0% |
| TTCGTATCGTCAAAATTGAG+CGG | - | chr1_4:57394694-57394713 | None:intergenic | 35.0% | |
| !! | TATCTGACATGTTTCTGGTT+TGG | + | chr1_4:57394794-57394813 | Msa0172360:intron | 35.0% |
| ! | ATGAAACAATGGGTTCAATC+CGG | - | chr1_4:57394877-57394896 | None:intergenic | 35.0% |
| !! | GGTTGATAGAAATGATGATG+TGG | - | chr1_4:57394993-57395012 | None:intergenic | 35.0% |
| GGCATAGGATTAATAGATGT+GGG | - | chr1_4:57395014-57395033 | None:intergenic | 35.0% | |
| TGGCATAGGATTAATAGATG+TGG | - | chr1_4:57395015-57395034 | None:intergenic | 35.0% | |
| TTGACTCTCATATCATGACA+TGG | - | chr1_4:57395035-57395054 | None:intergenic | 35.0% | |
| CATGATATGAGAGTCAACAA+TGG | + | chr1_4:57395038-57395057 | Msa0172360:CDS | 35.0% | |
| CAGTAAATTGCCATATCTTG+TGG | + | chr1_4:57395236-57395255 | Msa0172360:exon | 35.0% | |
| ACTAAAGCAACCACAAGATA+TGG | - | chr1_4:57395249-57395268 | None:intergenic | 35.0% | |
| GTCAAGAAGTTATTCTTGTC+TGG | + | chr1_4:57395267-57395286 | Msa0172360:three_prime_UTR | 35.0% | |
| ! | GCATGAACCAAACATTTTGA+GGG | - | chr1_4:57395455-57395474 | None:intergenic | 35.0% |
| ! | AAAATGTTTGGTTCATGCGA+GGG | + | chr1_4:57395457-57395476 | Msa0172360:three_prime_UTR | 35.0% |
| ! | AGGGGGAGAATTTTATTGAA+AGG | + | chr1_4:57395481-57395500 | Msa0172360:three_prime_UTR | 35.0% |
| ! | GGGGGAGAATTTTATTGAAA+GGG | + | chr1_4:57395482-57395501 | Msa0172360:three_prime_UTR | 35.0% |
| CCGATATTCTTCGGAATCAA+CGG | - | chr1_4:57390636-57390655 | None:intergenic | 40.0% | |
| !! | CCGTTGATTCCGAAGAATAT+CGG | + | chr1_4:57390633-57390652 | Msa0172360:CDS | 40.0% |
| !! | CGTTGATTCCGAAGAATATC+GGG | + | chr1_4:57390634-57390653 | Msa0172360:CDS | 40.0% |
| TCTGAAGAGTAAGCTGAATC+AGG | + | chr1_4:57390661-57390680 | Msa0172360:CDS | 40.0% | |
| GAAAGGGCCAATTCACTATA+AGG | - | chr1_4:57391051-57391070 | None:intergenic | 40.0% | |
| ! | TTTTCTACTGATAGGAGCCA+GGG | - | chr1_4:57391143-57391162 | None:intergenic | 40.0% |
| ! | TTTTTCTACTGATAGGAGCC+AGG | - | chr1_4:57391144-57391163 | None:intergenic | 40.0% |
| TGATGGCATGAACCGTTAAT+AGG | + | chr1_4:57391176-57391195 | Msa0172360:intron | 40.0% | |
| CTAATAGCTGTGCCGAAATT+CGG | + | chr1_4:57391258-57391277 | Msa0172360:intron | 40.0% | |
| TCCAAATGAAAGGTCTTTGG+TGG | + | chr1_4:57391294-57391313 | Msa0172360:intron | 40.0% | |
| TTTGTGGATTTGAAAGCGGA+TGG | + | chr1_4:57391485-57391504 | Msa0172360:intron | 40.0% | |
| !! | GCCACTTTAACCATTTTCTC+TGG | + | chr1_4:57391533-57391552 | Msa0172360:intron | 40.0% |
| GACATAAGAAGGAGAGGTAA+TGG | + | chr1_4:57391645-57391664 | Msa0172360:intron | 40.0% | |
| CATAAGAAGGAGAGGTAATG+GGG | + | chr1_4:57391647-57391666 | Msa0172360:intron | 40.0% | |
| ! | ATAAGAAGGAGAGGTAATGG+GGG | + | chr1_4:57391648-57391667 | Msa0172360:intron | 40.0% |
| GAAGAAGAAGAACTGCAGTA+AGG | + | chr1_4:57391692-57391711 | Msa0172360:intron | 40.0% | |
| CAATATTTAGATCTGGGCCT+AGG | - | chr1_4:57391790-57391809 | None:intergenic | 40.0% | |
| CTAGGCCCAGATCTAAATAT+TGG | + | chr1_4:57391788-57391807 | Msa0172360:intron | 40.0% | |
| !! | CGTATAGAAACTTTGGAACC+CGG | + | chr1_4:57391854-57391873 | Msa0172360:intron | 40.0% |
| !! | GTCCTCCTTGCTTTTACTTT+TGG | + | chr1_4:57392177-57392196 | Msa0172360:intron | 40.0% |
| GACCAAAAGTAAAAGCAAGG+AGG | - | chr1_4:57392182-57392201 | None:intergenic | 40.0% | |
| TTAGTAGCATTAGAGGACTG+TGG | - | chr1_4:57392436-57392455 | None:intergenic | 40.0% | |
| CCACCTCTAAATTACTCATG+GGG | - | chr1_4:57392585-57392604 | None:intergenic | 40.0% | |
| !!! | ATGGTTTTTTTCTGCACAGG+CGG | - | chr1_4:57392848-57392867 | None:intergenic | 40.0% |
| ! | CTTGATGATCCACTTGTTGA+TGG | - | chr1_4:57392884-57392903 | None:intergenic | 40.0% |
| ! | CTTACTCGTTTTACGTCAGT+AGG | - | chr1_4:57392965-57392984 | None:intergenic | 40.0% |
| CTACTGACGTAAAACGAGTA+AGG | + | chr1_4:57392963-57392982 | Msa0172360:CDS | 40.0% | |
| ! | TGTCACTTGGTTCATTAAGC+AGG | - | chr1_4:57393137-57393156 | None:intergenic | 40.0% |
| TGCTTAATGAACCAAGTGAC+AGG | + | chr1_4:57393136-57393155 | Msa0172360:intron | 40.0% | |
| !! | TATAGTGGTGCTATACTGCT+GGG | + | chr1_4:57393320-57393339 | Msa0172360:intron | 40.0% |
| TAAAATCCCGCTGCACAAAA+GGG | - | chr1_4:57393424-57393443 | None:intergenic | 40.0% | |
| TTAAAATCCCGCTGCACAAA+AGG | - | chr1_4:57393425-57393444 | None:intergenic | 40.0% | |
| ! | TTCCTTAGGTGCTTTTCGTA+CGG | - | chr1_4:57393713-57393732 | None:intergenic | 40.0% |
| AAACTTGGGTGCATTTCCTT+AGG | - | chr1_4:57393727-57393746 | None:intergenic | 40.0% | |
| ! | ACACTCATTTGTTCGACTTG+AGG | + | chr1_4:57393842-57393861 | Msa0172360:intron | 40.0% |
| CCAACAGAAACATTGAAGAG+AGG | - | chr1_4:57394032-57394051 | None:intergenic | 40.0% | |
| ! | CCTCTCTTCAATGTTTCTGT+TGG | + | chr1_4:57394029-57394048 | Msa0172360:intron | 40.0% |
| ATCAGTAAGACGCTTTACCA+AGG | - | chr1_4:57394137-57394156 | None:intergenic | 40.0% | |
| !! | CCAAAAGTACACTGATTCTG+CGG | + | chr1_4:57394162-57394181 | Msa0172360:CDS | 40.0% |
| CATTGCCTGGTTAAAAACTG+TGG | + | chr1_4:57394256-57394275 | Msa0172360:intron | 40.0% | |
| ! | GTTTGCCACAGTTTTTAACC+AGG | - | chr1_4:57394264-57394283 | None:intergenic | 40.0% |
| CTAAACAAGTTCCTTAGGTC+TGG | + | chr1_4:57394297-57394316 | Msa0172360:intron | 40.0% | |
| ATCGTCAAAATTGAGCGGTT+TGG | - | chr1_4:57394689-57394708 | None:intergenic | 40.0% | |
| GAGACTGTGAAAAGAGTTAC+CGG | + | chr1_4:57394855-57394874 | Msa0172360:CDS | 40.0% | |
| CAGGCATGACATGAAACAAT+GGG | - | chr1_4:57394887-57394906 | None:intergenic | 40.0% | |
| TCAGGCATGACATGAAACAA+TGG | - | chr1_4:57394888-57394907 | None:intergenic | 40.0% | |
| ATGCCTGACATGTCATCAAT+GGG | + | chr1_4:57394900-57394919 | Msa0172360:CDS | 40.0% | |
| CTCATATCATGACATGGCAT+AGG | - | chr1_4:57395029-57395048 | None:intergenic | 40.0% | |
| TATGAGAGTCAACAATGGGT+TGG | + | chr1_4:57395043-57395062 | Msa0172360:CDS | 40.0% | |
| ! | ATGAGAGTCAACAATGGGTT+GGG | + | chr1_4:57395044-57395063 | Msa0172360:CDS | 40.0% |
| ATTTACTGCTCTCCATTAGG+AGG | - | chr1_4:57395224-57395243 | None:intergenic | 40.0% | |
| GCAATTTACTGCTCTCCATT+AGG | - | chr1_4:57395227-57395246 | None:intergenic | 40.0% | |
| ATTCCCCAAACGAAGATATG+GGG | - | chr1_4:57395392-57395411 | None:intergenic | 40.0% | |
| CATTCCCCAAACGAAGATAT+GGG | - | chr1_4:57395393-57395412 | None:intergenic | 40.0% | |
| ! | CGCATGAACCAAACATTTTG+AGG | - | chr1_4:57395456-57395475 | None:intergenic | 40.0% |
| ! | CAAAATGTTTGGTTCATGCG+AGG | + | chr1_4:57395456-57395475 | Msa0172360:three_prime_UTR | 40.0% |
| ACAGAGGAAGAAGAAGGAGA+AGG | - | chr1_4:57390539-57390558 | None:intergenic | 45.0% | |
| TCAGCAACAGAGGAAGAAGA+AGG | - | chr1_4:57390545-57390564 | None:intergenic | 45.0% | |
| CAGAACAGCCCGATATTCTT+CGG | - | chr1_4:57390645-57390664 | None:intergenic | 45.0% | |
| GCCACCAAAGACCTTTCATT+TGG | - | chr1_4:57391298-57391317 | None:intergenic | 45.0% | |
| GAAGAAGAACTGCAGTAAGG+TGG | + | chr1_4:57391695-57391714 | Msa0172360:intron | 45.0% | |
| ! | ACGGTACTTTGAAAGAGGCT+AGG | - | chr1_4:57391758-57391777 | None:intergenic | 45.0% |
| ! | AGTACCGTATGTATTGGCCT+AGG | + | chr1_4:57391770-57391789 | Msa0172360:intron | 45.0% |
| !! | CGGACACTATTTTAGAGACG+CGG | - | chr1_4:57392084-57392103 | None:intergenic | 45.0% |
| AACCAAAAATTGGTGCGGAG+CGG | - | chr1_4:57392104-57392123 | None:intergenic | 45.0% | |
| !!! | CTCCGCACCAATTTTTGGTT+TGG | + | chr1_4:57392104-57392123 | Msa0172360:intron | 45.0% |
| GGCCAAACCAAAAATTGGTG+CGG | - | chr1_4:57392109-57392128 | None:intergenic | 45.0% | |
| AATGAAGTGTAGGGTGGAGA+TGG | - | chr1_4:57392217-57392236 | None:intergenic | 45.0% | |
| GCACAAAATGAAGTGTAGGG+TGG | - | chr1_4:57392223-57392242 | None:intergenic | 45.0% | |
| CATTCTCAGGAAAAGTGGCT+AGG | - | chr1_4:57392411-57392430 | None:intergenic | 45.0% | |
| !!! | CTAGCCACTTTTCCTGAGAA+TGG | + | chr1_4:57392409-57392428 | Msa0172360:CDS | 45.0% |
| TGGTCCATTCTCAGGAAAAG+TGG | - | chr1_4:57392416-57392435 | None:intergenic | 45.0% | |
| TGGCCCCATGAGTAATTTAG+AGG | + | chr1_4:57392579-57392598 | Msa0172360:intron | 45.0% | |
| CCCCATGAGTAATTTAGAGG+TGG | + | chr1_4:57392582-57392601 | Msa0172360:intron | 45.0% | |
| TATGCAGGATCTGTTCCTTC+TGG | + | chr1_4:57392761-57392780 | Msa0172360:intron | 45.0% | |
| !!! | TTTTTTCTGCACAGGCGGTA+TGG | - | chr1_4:57392843-57392862 | None:intergenic | 45.0% |
| TGATGGCCTAATGGCAACAA+TGG | - | chr1_4:57392867-57392886 | None:intergenic | 45.0% | |
| !! | TCCACTTGTTGATGGCCTAA+TGG | - | chr1_4:57392876-57392895 | None:intergenic | 45.0% |
| ! | TCTGATGATGACGAAGCTGA+GGG | + | chr1_4:57392911-57392930 | Msa0172360:CDS | 45.0% |
| CTGACGTAAAACGAGTAAGG+AGG | + | chr1_4:57392966-57392985 | Msa0172360:CDS | 45.0% | |
| !! | GTGCAAACTGTTGATTTGGC+TGG | + | chr1_4:57393220-57393239 | Msa0172360:intron | 45.0% |
| !! | CTATAGTGGTGCTATACTGC+TGG | + | chr1_4:57393319-57393338 | Msa0172360:intron | 45.0% |
| ! | GATATAGCCCTTTTGTGCAG+CGG | + | chr1_4:57393414-57393433 | Msa0172360:intron | 45.0% |
| ! | ATATAGCCCTTTTGTGCAGC+GGG | + | chr1_4:57393415-57393434 | Msa0172360:intron | 45.0% |
| ! | ATGTTCTGAATCGCGGATAG+CGG | - | chr1_4:57393462-57393481 | None:intergenic | 45.0% |
| !! | AACCGTACGAAAAGCACCTA+AGG | + | chr1_4:57393708-57393727 | Msa0172360:intron | 45.0% |
| CTTGAGGACTCTTTCTACCT+TGG | + | chr1_4:57393858-57393877 | Msa0172360:intron | 45.0% | |
| TTTCCAATAGAGAGTCAGCC+AGG | + | chr1_4:57393920-57393939 | Msa0172360:CDS | 45.0% | |
| GCAGGCTCATTTAACTGAGT+TGG | + | chr1_4:57393960-57393979 | Msa0172360:CDS | 45.0% | |
| ! | CCGCAGAATCAGTGTACTTT+TGG | - | chr1_4:57394165-57394184 | None:intergenic | 45.0% |
| CATGCCTGACATGTCATCAA+TGG | + | chr1_4:57394899-57394918 | Msa0172360:CDS | 45.0% | |
| TGCCTGACATGTCATCAATG+GGG | + | chr1_4:57394901-57394920 | Msa0172360:CDS | 45.0% | |
| ! | ATCCCCATTGATGACATGTC+AGG | - | chr1_4:57394906-57394925 | None:intergenic | 45.0% |
| CATCTGCTGAATTGTCTGAG+GGG | - | chr1_4:57394947-57394966 | None:intergenic | 45.0% | |
| GCATCTGCTGAATTGTCTGA+GGG | - | chr1_4:57394948-57394967 | None:intergenic | 45.0% | |
| TGCATCTGCTGAATTGTCTG+AGG | - | chr1_4:57394949-57394968 | None:intergenic | 45.0% | |
| CCTACAACTGCTGCATTGTT+TGG | - | chr1_4:57395098-57395117 | None:intergenic | 45.0% | |
| CCAAACAATGCAGCAGTTGT+AGG | + | chr1_4:57395095-57395114 | Msa0172360:CDS | 45.0% | |
| AACAATGCAGCAGTTGTAGG+TGG | + | chr1_4:57395098-57395117 | Msa0172360:CDS | 45.0% | |
| ACAATGCAGCAGTTGTAGGT+GGG | + | chr1_4:57395099-57395118 | Msa0172360:CDS | 45.0% | |
| AGTTGTAGGTGGGAACAAGA+TGG | + | chr1_4:57395109-57395128 | Msa0172360:CDS | 45.0% | |
| GTTGTAGGTGGGAACAAGAT+GGG | + | chr1_4:57395110-57395129 | Msa0172360:CDS | 45.0% | |
| GCTTGGAACATCTTCAGAAG+CGG | + | chr1_4:57395165-57395184 | Msa0172360:CDS | 45.0% | |
| TGCACCCCATATCTTCGTTT+GGG | + | chr1_4:57395385-57395404 | Msa0172360:three_prime_UTR | 45.0% | |
| GCATTCCCCAAACGAAGATA+TGG | - | chr1_4:57395394-57395413 | None:intergenic | 45.0% | |
| ACGAAATCCCCGACAACCTA+TGG | + | chr1_4:57390408-57390427 | Msa0172360:CDS | 50.0% | |
| CATGAATCTGCGGTGACCAT+AGG | - | chr1_4:57390427-57390446 | None:intergenic | 50.0% | |
| TCACCGCAGATTCATGTCAC+CGG | + | chr1_4:57390431-57390450 | Msa0172360:CDS | 50.0% | |
| CATCTTGGAGGATTCATCGC+CGG | - | chr1_4:57390462-57390481 | None:intergenic | 50.0% | |
| !! | AAAGCGTTGGAACGCCCATT+CGG | - | chr1_4:57390498-57390517 | None:intergenic | 50.0% |
| ! | CAGCTTCTTGCAGAAAGCGT+TGG | - | chr1_4:57390511-57390530 | None:intergenic | 50.0% |
| GGAAGAAGAAGGAGAAGGTG+TGG | - | chr1_4:57390534-57390553 | None:intergenic | 50.0% | |
| TCCTCTGTTGCTGACAACAC+CGG | + | chr1_4:57390551-57390570 | Msa0172360:CDS | 50.0% | |
| !! | ACCGTCTTTTGGTGCAGCAT+CGG | - | chr1_4:57390582-57390601 | None:intergenic | 50.0% |
| AGGTGGTCCATTGGGCAAAA+CGG | - | chr1_4:57390606-57390625 | None:intergenic | 50.0% | |
| GGATTTGAAAGCGGATGGAG+CGG | + | chr1_4:57391490-57391509 | Msa0172360:intron | 50.0% | |
| GATTTGAAAGCGGATGGAGC+GGG | + | chr1_4:57391491-57391510 | Msa0172360:intron | 50.0% | |
| AATGGTTAAAGTGGCCGCTC+CGG | - | chr1_4:57391528-57391547 | None:intergenic | 50.0% | |
| GAAGAACTGCAGTAAGGTGG+TGG | + | chr1_4:57391698-57391717 | Msa0172360:intron | 50.0% | |
| TGGGCCTAGGCCAATACATA+CGG | - | chr1_4:57391777-57391796 | None:intergenic | 50.0% | |
| GGCACGGCCAAACCAAAAAT+TGG | - | chr1_4:57392114-57392133 | None:intergenic | 50.0% | |
| GGATCTCAGCCCATTTCTGA+AGG | + | chr1_4:57392460-57392479 | Msa0172360:CDS | 50.0% | |
| ATAGGTGGATCGCTTCCAGA+AGG | - | chr1_4:57392779-57392798 | None:intergenic | 50.0% | |
| GCCATTAGGCCATCAACAAG+TGG | + | chr1_4:57392872-57392891 | Msa0172360:CDS | 50.0% | |
| ! | GTCTGATGATGACGAAGCTG+AGG | + | chr1_4:57392910-57392929 | Msa0172360:CDS | 50.0% |
| TGGTTCATTAAGCAGGAGCG+AGG | - | chr1_4:57393130-57393149 | None:intergenic | 50.0% | |
| TGCTATACTGCTGGGTGTAG+CGG | + | chr1_4:57393328-57393347 | Msa0172360:intron | 50.0% | |
| ! | TGTTCTGAATCGCGGATAGC+GGG | - | chr1_4:57393461-57393480 | None:intergenic | 50.0% |
| CTTTCTTCTTCTTGAGCGCC+TGG | - | chr1_4:57393941-57393960 | None:intergenic | 50.0% | |
| GCGCTCAAGAAGAAGAAAGC+AGG | + | chr1_4:57393942-57393961 | Msa0172360:CDS | 50.0% | |
| ATGGGGATGCCAGCATTTGA+TGG | + | chr1_4:57394918-57394937 | Msa0172360:CDS | 50.0% | |
| TGATGTGGATCGTCTTGCAC+AGG | - | chr1_4:57394978-57394997 | None:intergenic | 50.0% | |
| ! | CATCTTCAGAAGCGGATTCG+TGG | + | chr1_4:57395173-57395192 | Msa0172360:CDS | 50.0% |
| TCTTGTGGACCTCCTCCTAA+TGG | + | chr1_4:57395209-57395228 | Msa0172360:CDS | 50.0% | |
| TACTGCTCTCCATTAGGAGG+AGG | - | chr1_4:57395221-57395240 | None:intergenic | 50.0% | |
| GTGCACCCCATATCTTCGTT+TGG | + | chr1_4:57395384-57395403 | Msa0172360:three_prime_UTR | 50.0% | |
| GCACCCCATATCTTCGTTTG+GGG | + | chr1_4:57395386-57395405 | Msa0172360:three_prime_UTR | 50.0% | |
| ! | TGTTTGGTTCATGCGAGGGA+AGG | + | chr1_4:57395461-57395480 | Msa0172360:three_prime_UTR | 50.0% |
| ! | GTTTGGTTCATGCGAGGGAA+GGG | + | chr1_4:57395462-57395481 | Msa0172360:three_prime_UTR | 50.0% |
| ! | TTTGGTTCATGCGAGGGAAG+GGG | + | chr1_4:57395463-57395482 | Msa0172360:three_prime_UTR | 50.0% |
| TGCGGTGACCATAGGTTGTC+GGG | - | chr1_4:57390419-57390438 | None:intergenic | 55.0% | |
| CTGCGGTGACCATAGGTTGT+CGG | - | chr1_4:57390420-57390439 | None:intergenic | 55.0% | |
| !! | ACCGGTGTTGTCAGCAACAG+AGG | - | chr1_4:57390555-57390574 | None:intergenic | 55.0% |
| !! | TGGTGCAGCATCGGCAAAAC+CGG | - | chr1_4:57390573-57390592 | None:intergenic | 55.0% |
| GCCGATGCTGCACCAAAAGA+CGG | + | chr1_4:57390578-57390597 | Msa0172360:intron | 55.0% | |
| ! | GGCAAAACGGCACCGTCTTT+TGG | - | chr1_4:57390593-57390612 | None:intergenic | 55.0% |
| TTTGCCCAATGGACCACCTC+CGG | + | chr1_4:57390607-57390626 | Msa0172360:CDS | 55.0% | |
| TCTTCGGAATCAACGGCCAC+CGG | - | chr1_4:57390629-57390648 | None:intergenic | 55.0% | |
| GCCTGTAGCAGCTGCTATTG+CGG | + | chr1_4:57391382-57391401 | Msa0172360:intron | 55.0% | |
| ACCGCAATAGCAGCTGCTAC+AGG | - | chr1_4:57391386-57391405 | None:intergenic | 55.0% | |
| TAGCAGCTGCTATTGCGGTG+CGG | + | chr1_4:57391387-57391406 | Msa0172360:intron | 55.0% | |
| !! | AGGAGAGGTAATGGGGGAGA+AGG | + | chr1_4:57391654-57391673 | Msa0172360:intron | 55.0% |
| ! | GTCCGCTCCGCACCAATTTT+TGG | + | chr1_4:57392099-57392118 | Msa0172360:intron | 55.0% |
| ATCAATGCGGAAATGCGGCG+AGG | - | chr1_4:57392135-57392154 | None:intergenic | 55.0% | |
| GAGGACTGTGGTCCATTCTC+AGG | - | chr1_4:57392424-57392443 | None:intergenic | 55.0% | |
| TCTGCACAGGCGGTATGGAA+GGG | - | chr1_4:57392838-57392857 | None:intergenic | 55.0% | |
| TTCTGCACAGGCGGTATGGA+AGG | - | chr1_4:57392839-57392858 | None:intergenic | 55.0% | |
| GAGGGGCTTCCATCAAATGC+TGG | - | chr1_4:57394930-57394949 | None:intergenic | 55.0% | |
| AAACAGCTCCTCCGTTGCAC+CGG | + | chr1_4:57395135-57395154 | Msa0172360:CDS | 55.0% | |
| GATGTTCCAAGCTAGCCACC+CGG | - | chr1_4:57395157-57395176 | None:intergenic | 55.0% | |
| ! | CTTCAGAAGCGGATTCGTGG+TGG | + | chr1_4:57395176-57395195 | Msa0172360:CDS | 55.0% |
| TTGGTTCATGCGAGGGAAGG+GGG | + | chr1_4:57395464-57395483 | Msa0172360:three_prime_UTR | 55.0% | |
| GCGGTGACCATAGGTTGTCG+GGG | - | chr1_4:57390418-57390437 | None:intergenic | 60.0% | |
| CCGCCGGTGACATGAATCTG+CGG | - | chr1_4:57390437-57390456 | None:intergenic | 60.0% | |
| CCGCAGATTCATGTCACCGG+CGG | + | chr1_4:57390434-57390453 | Msa0172360:CDS | 60.0% | |
| AGCGCTGCGACTCATCTTGG+AGG | - | chr1_4:57390474-57390493 | None:intergenic | 60.0% | |
| !! | GGAAGCGCTGCGACTCATCT+TGG | - | chr1_4:57390477-57390496 | None:intergenic | 60.0% |
| TGAGTCGCAGCGCTTCCGAA+TGG | + | chr1_4:57390480-57390499 | Msa0172360:CDS | 60.0% | |
| GAGTCGCAGCGCTTCCGAAT+GGG | + | chr1_4:57390481-57390500 | Msa0172360:CDS | 60.0% | |
| !!! | GACGGTGCCGTTTTGCCCAA+TGG | + | chr1_4:57390596-57390615 | Msa0172360:intron | 60.0% |
| GCTGAATCAGGCATGCGCTG+CGG | + | chr1_4:57390673-57390692 | Msa0172360:CDS | 60.0% | |
| CGCTGCGGTTGCCATGACTA+GGG | + | chr1_4:57390688-57390707 | Msa0172360:CDS | 60.0% | |
| TCTGACACGGATGGGTGTGG+TGG | - | chr1_4:57391429-57391448 | None:intergenic | 60.0% | |
| CACACCCATCCGTGTCAGAG+CGG | + | chr1_4:57391430-57391449 | Msa0172360:intron | 60.0% | |
| ! | TGTGCCGCTCTGACACGGAT+GGG | - | chr1_4:57391437-57391456 | None:intergenic | 60.0% |
| ! | CTGACTGTGCCGCTCTGACA+CGG | - | chr1_4:57391442-57391461 | None:intergenic | 60.0% |
| !! | GGTTGGTGCGGCCGATTTTG+TGG | + | chr1_4:57391469-57391488 | Msa0172360:intron | 60.0% |
| GGATGGAGCGGGTATGAAGC+AGG | + | chr1_4:57391502-57391521 | Msa0172360:intron | 60.0% | |
| AGGGATCGCAGGTGGTACCT+TGG | - | chr1_4:57392819-57392838 | None:intergenic | 60.0% | |
| GGTATGGAAGGGATCGCAGG+TGG | - | chr1_4:57392827-57392846 | None:intergenic | 60.0% | |
| ! | GCGCCTGGCTGACTCTCTAT+TGG | - | chr1_4:57393926-57393945 | None:intergenic | 60.0% |
| AACAGCTCCTCCGTTGCACC+GGG | + | chr1_4:57395136-57395155 | Msa0172360:CDS | 60.0% | |
| AAGCTAGCCACCCGGTGCAA+CGG | - | chr1_4:57395149-57395168 | None:intergenic | 60.0% | |
| ! | CAGAAGCGGATTCGTGGTGG+CGG | + | chr1_4:57395179-57395198 | Msa0172360:CDS | 60.0% |
| !! | GGTGGCGGTGTCGATTCTTG+TGG | + | chr1_4:57395194-57395213 | Msa0172360:CDS | 60.0% |
| ATTCATGTCACCGGCGGCGC+CGG | + | chr1_4:57390440-57390459 | Msa0172360:CDS | 65.0% | |
| GCCACCGGAGGTGGTCCATT+GGG | - | chr1_4:57390614-57390633 | None:intergenic | 65.0% | |
| GAATCAACGGCCACCGGAGG+TGG | - | chr1_4:57390623-57390642 | None:intergenic | 65.0% | |
| TCGGAATCAACGGCCACCGG+AGG | - | chr1_4:57390626-57390645 | None:intergenic | 65.0% | |
| GCGCTGCGGTTGCCATGACT+AGG | + | chr1_4:57390687-57390706 | Msa0172360:CDS | 65.0% | |
| GGTGCGGCGCGGAAAAAGTG+AGG | + | chr1_4:57391403-57391422 | Msa0172360:intron | 65.0% | |
| CGCTCTGACACGGATGGGTG+TGG | - | chr1_4:57391432-57391451 | None:intergenic | 65.0% | |
| ! | CTGTGCCGCTCTGACACGGA+TGG | - | chr1_4:57391438-57391457 | None:intergenic | 65.0% |
| CGTGTCAGAGCGGCACAGTC+AGG | + | chr1_4:57391440-57391459 | Msa0172360:intron | 65.0% | |
| GTCAGAGCGGCACAGTCAGG+TGG | + | chr1_4:57391443-57391462 | Msa0172360:intron | 65.0% | |
| AGCGGCACAGTCAGGTGGTG+CGG | + | chr1_4:57391448-57391467 | Msa0172360:intron | 65.0% | |
| GCACAGTCAGGTGGTGCGGT+TGG | + | chr1_4:57391452-57391471 | Msa0172360:intron | 65.0% | |
| ! | GTCAGGTGGTGCGGTTGGTG+CGG | + | chr1_4:57391457-57391476 | Msa0172360:intron | 65.0% |
| GGAGCGGGTATGAAGCAGGC+CGG | + | chr1_4:57391506-57391525 | Msa0172360:intron | 65.0% | |
| GGGTATGAAGCAGGCCGGAG+CGG | + | chr1_4:57391511-57391530 | Msa0172360:intron | 65.0% | |
| TGCGGAAATGCGGCGAGGCA+CGG | - | chr1_4:57392130-57392149 | None:intergenic | 65.0% | |
| GGCGGTATGGAAGGGATCGC+AGG | - | chr1_4:57392830-57392849 | None:intergenic | 65.0% | |
| ! | GTTGCACCGGGTGGCTAGCT+TGG | + | chr1_4:57395148-57395167 | Msa0172360:CDS | 65.0% |
| GCCCAATGGACCACCTCCGG+TGG | + | chr1_4:57390610-57390629 | Msa0172360:CDS | 70.0% | |
| GGCCACCGGAGGTGGTCCAT+TGG | - | chr1_4:57390615-57390634 | None:intergenic | 70.0% | |
| GCTGCTATTGCGGTGCGGCG+CGG | + | chr1_4:57391392-57391411 | Msa0172360:intron | 70.0% | |
| AGCTCCTCCGTTGCACCGGG+TGG | + | chr1_4:57395139-57395158 | Msa0172360:CDS | 70.0% | |
| CTAGCCACCCGGTGCAACGG+AGG | - | chr1_4:57395146-57395165 | None:intergenic | 70.0% | |
| GGATTCATCGCCGGCGCCGC+CGG | - | chr1_4:57390453-57390472 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 57390386 | 57395599 | 57390386 | ID=Msa0172360;Name=Msa0172360 |
| chr1_4 | mRNA | 57390386 | 57395599 | 57390386 | ID=Msa0172360-mRNA-1;Parent=Msa0172360;Name=Msa0172360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.83|0.71|1|0.66|0.71|7|358|406 |
| chr1_4 | exon | 57390386 | 57390572 | 57390386 | ID=Msa0172360-mRNA-1:exon:17566;Parent=Msa0172360-mRNA-1 |
| chr1_4 | exon | 57390597 | 57390709 | 57390597 | ID=Msa0172360-mRNA-1:exon:17567;Parent=Msa0172360-mRNA-1 |
| chr1_4 | exon | 57392385 | 57392481 | 57392385 | ID=Msa0172360-mRNA-1:exon:17568;Parent=Msa0172360-mRNA-1 |
| chr1_4 | exon | 57392768 | 57392987 | 57392768 | ID=Msa0172360-mRNA-1:exon:17569;Parent=Msa0172360-mRNA-1 |
| chr1_4 | exon | 57393915 | 57393990 | 57393915 | ID=Msa0172360-mRNA-1:exon:17570;Parent=Msa0172360-mRNA-1 |
| chr1_4 | exon | 57394106 | 57394231 | 57394106 | ID=Msa0172360-mRNA-1:exon:17571;Parent=Msa0172360-mRNA-1 |
| chr1_4 | exon | 57394840 | 57395599 | 57394840 | ID=Msa0172360-mRNA-1:exon:17572;Parent=Msa0172360-mRNA-1 |
| chr1_4 | CDS | 57390386 | 57390572 | 57390386 | ID=Msa0172360-mRNA-1:cds;Parent=Msa0172360-mRNA-1 |
| chr1_4 | CDS | 57390597 | 57390709 | 57390597 | ID=Msa0172360-mRNA-1:cds;Parent=Msa0172360-mRNA-1 |
| chr1_4 | CDS | 57392385 | 57392481 | 57392385 | ID=Msa0172360-mRNA-1:cds;Parent=Msa0172360-mRNA-1 |
| chr1_4 | CDS | 57392768 | 57392987 | 57392768 | ID=Msa0172360-mRNA-1:cds;Parent=Msa0172360-mRNA-1 |
| chr1_4 | CDS | 57393915 | 57393990 | 57393915 | ID=Msa0172360-mRNA-1:cds;Parent=Msa0172360-mRNA-1 |
| chr1_4 | CDS | 57394106 | 57394231 | 57394106 | ID=Msa0172360-mRNA-1:cds;Parent=Msa0172360-mRNA-1 |
| chr1_4 | CDS | 57394840 | 57395241 | 57394840 | ID=Msa0172360-mRNA-1:cds;Parent=Msa0172360-mRNA-1 |
| chr1_4 | three_prime_UTR | 57395242 | 57395599 | 57395242 | ID=Msa0172360-mRNA-1:three_prime_utr;Parent=Msa0172360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
