AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033960 MtrunA17_Chr1g0194501 91.781 365 7 1 1 342 1 365 0.0 683
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033960 AT3G62370.1 62.953 359 110 3 4 341 3 359 1.18e-171 481

Find 112 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTCCGGGACGGCTTTA+TGG 0.170463 1_1:-61832084 Msa0033960:CDS
CTGTTTGATACACTATTTAA+AGG 0.204813 1_1:+61827560 None:intergenic
CGAGTTTATATAAGTGGATT+TGG 0.212359 1_1:+61834820 None:intergenic
CTCTAGGCCTTTGAGGACTA+TGG 0.252101 1_1:-61828517 Msa0033960:CDS
TTCTTTCTGCTTCAAGTTGA+TGG 0.258059 1_1:-61834359 Msa0033960:CDS
GTTGCACTTATGTTTCAAAT+TGG 0.278592 1_1:-61833514 Msa0033960:CDS
GGCACTGGTCCTTCAGGTTC+TGG 0.288724 1_1:-61831847 Msa0033960:intron
TTCAATTGGAAATGCTATTC+CGG 0.289510 1_1:-61832097 Msa0033960:CDS
GAGAACCCTTATGCAGAAAA+TGG 0.296262 1_1:-61828567 Msa0033960:CDS
TTGGATGGCACTGGTCCTTC+AGG 0.301058 1_1:-61831853 Msa0033960:CDS
TTCATACAGGTTTGGCCATT+TGG 0.305048 1_1:-61831911 Msa0033960:intron
GTTCAATAGTCCAAGTATAA+TGG 0.308197 1_1:-61827393 Msa0033960:three_prime_UTR
TGTATCAAACAGCTTGAGTT+TGG 0.320319 1_1:-61827549 Msa0033960:three_prime_UTR
AAGTGTAAAGAGAATGTAAA+AGG 0.325253 1_1:-61835019 Msa0033960:five_prime_UTR
CCCGGTGTTATTACACTTGA+TGG 0.331253 1_1:-61834593 Msa0033960:CDS
GTCAACTTCATGACCTTTGC+AGG 0.335113 1_1:+61832131 None:intergenic
CATTTACGATTGTACTATAT+AGG 0.336446 1_1:-61827514 Msa0033960:three_prime_UTR
GGTGATTATGCCTACTCTAA+TGG 0.343433 1_1:-61834338 Msa0033960:CDS
TGTCTGTGTTTGTGAGTTAT+CGG 0.344354 1_1:-61827624 Msa0033960:CDS
GCAAGATGTCTGTCGGATTC+TGG 0.349571 1_1:-61827828 Msa0033960:CDS
ACTACTCTGTTAACTGTGAT+TGG 0.350378 1_1:-61827768 Msa0033960:CDS
TCAATTGGAAATGCTATTCC+GGG 0.355065 1_1:-61832096 Msa0033960:CDS
GTATCTGCAGTGTGGATTCC+AGG 0.373410 1_1:+61831876 None:intergenic
GGTAAGCCATGGCACGGTTC+CGG 0.376073 1_1:-61827793 Msa0033960:CDS
GGTCCATGGAGCTGTGAAAC+CGG 0.385078 1_1:-61834647 Msa0033960:CDS
ATTTCCATCTCTATTGTCAA+TGG 0.406014 1_1:+61832053 None:intergenic
TTGAATTCTCTAGGCCTTTG+AGG 0.408768 1_1:-61828524 Msa0033960:CDS
AAGGTTCTCCATTGGAGTAA+AGG 0.412113 1_1:+61827579 None:intergenic
TTGTGTCTTGTTGCTAACTA+AGG 0.417284 1_1:+61835042 None:intergenic
AATAACACCGGGTTGAAATT+CGG 0.421139 1_1:+61834604 None:intergenic
GTATCAAACAGCTTGAGTTT+GGG 0.423240 1_1:-61827548 Msa0033960:three_prime_UTR
TGGAGTAAAGGCTACACTCT+TGG 0.432096 1_1:+61827591 None:intergenic
GGAGTAAAGGCTACACTCTT+GGG 0.441900 1_1:+61827592 None:intergenic
GTGATTATGCCTACTCTAAT+GGG 0.442592 1_1:-61834337 Msa0033960:intron
GCAACTTACATTATGATAAG+AGG 0.443186 1_1:+61833483 None:intergenic
GAATCCACACTGCAGATACT+TGG 0.443373 1_1:-61831872 Msa0033960:CDS
GACTATGGATCATCTGCAAC+AGG 0.447825 1_1:-61828502 Msa0033960:intron
TTGATGGTCATGCCGATGAT+TGG 0.452530 1_1:-61834577 Msa0033960:CDS
ATTTGGTTGATCTTTATGCC+TGG 0.456544 1_1:-61831894 Msa0033960:CDS
CTACTCTGTTAACTGTGATT+GGG 0.458444 1_1:-61827767 Msa0033960:CDS
TGCCATGGCTTACCATCTAC+TGG 0.461844 1_1:+61827802 None:intergenic
TTTCCATCTCTATTGTCAAT+GGG 0.463067 1_1:+61832054 None:intergenic
TTCCGGGACGGCTTTATGGC+GGG 0.467885 1_1:-61832080 Msa0033960:CDS
GGATTCTGGTATCCAGTAGA+TGG 0.471064 1_1:-61827814 Msa0033960:CDS
GTCTGTGTTTGTGAGTTATC+GGG 0.479240 1_1:-61827623 Msa0033960:CDS
ACTATTTAAAGGTTCTCCAT+TGG 0.483409 1_1:+61827571 None:intergenic
GTGGCAAGGTAGATCACAAA+TGG 0.484756 1_1:-61835088 Msa0033960:five_prime_UTR
GTTTATTCACACGAAGAGTC+GGG 0.494402 1_1:-61834668 Msa0033960:CDS
ATTTGATAGATCGCGATTTG+TGG 0.495040 1_1:+61834849 None:intergenic
AGATGGAACTCCATTATACT+TGG 0.495141 1_1:+61827383 None:intergenic
AAGGAAAATGCAACAAGTGC+TGG 0.498184 1_1:-61835000 Msa0033960:five_prime_UTR
GAGATGGAAATGGCGGTGAC+AGG 0.505100 1_1:-61832041 Msa0033960:intron
ATTGACAATAGAGATGGAAA+TGG 0.512303 1_1:-61832051 Msa0033960:CDS
GAGTGTAGCCTTTACTCCAA+TGG 0.521817 1_1:-61827587 Msa0033960:CDS
CTGCTCTGAGATATATCAAT+CGG 0.523134 1_1:+61827742 None:intergenic
CACACGAAGAGTCGGGTCCA+TGG 0.523429 1_1:-61834661 Msa0033960:CDS
TTTGTTGATTGAACTTGAAG+TGG 0.523706 1_1:-61834919 Msa0033960:five_prime_UTR
TGTTTATTCACACGAAGAGT+CGG 0.527511 1_1:-61834669 Msa0033960:CDS
CAGGATGTGCAATTCACCAT+TGG 0.528409 1_1:-61827859 Msa0033960:CDS
ATCAATGTCCTTCCAATCAT+CGG 0.529350 1_1:+61834565 None:intergenic
GTCCATGGAGCTGTGAAACC+GGG 0.530304 1_1:-61834646 Msa0033960:CDS
AGCAAGAAGAAGAGAGAAGT+GGG 0.530565 1_1:+61834538 None:intergenic
GATGATTGGAAGGACATTGA+TGG 0.532585 1_1:-61834563 Msa0033960:CDS
GACCCGGTTTCACAGCTCCA+TGG 0.533933 1_1:+61834644 None:intergenic
AGGCATAAAGATCAACCAAA+TGG 0.542098 1_1:+61831896 None:intergenic
GTTGATTGAACTTGAAGTGG+TGG 0.542845 1_1:-61834916 Msa0033960:five_prime_UTR
TTCCCGCCATAAAGCCGTCC+CGG 0.550538 1_1:+61832078 None:intergenic
TTGAAACATAAGTGCAACAG+AGG 0.557620 1_1:+61833519 None:intergenic
ACTCAGCATCAAGTAGCTCA+TGG 0.557960 1_1:-61827696 Msa0033960:CDS
GATGCTGAAAATGAATTCAA+TGG 0.562672 1_1:-61834506 Msa0033960:CDS
TGCAGATACTTGGATGGCAC+TGG 0.565255 1_1:-61831862 Msa0033960:CDS
ATTCCGGGACGGCTTTATGG+CGG 0.565691 1_1:-61832081 Msa0033960:CDS
ATGATTGGAAGGACATTGAT+GGG 0.569537 1_1:-61834562 Msa0033960:CDS
CTTAATTGTTGTAAGATGGG+TGG 0.570771 1_1:-61832189 Msa0033960:intron
CTCAACATGAATCTCTGACC+CGG 0.580275 1_1:+61834628 None:intergenic
GATGTGCAATTCACCATTGG+CGG 0.581517 1_1:-61827856 Msa0033960:CDS
TGCACAAATAAGACCTGCAA+AGG 0.582257 1_1:-61832144 Msa0033960:CDS
CAAAGAAAGAAATACCTTCA+CGG 0.582329 1_1:+61834472 None:intergenic
CTTATGTTTCAAATTGGAGA+TGG 0.582716 1_1:-61833508 Msa0033960:CDS
CCACACTGCAGATACTTGGA+TGG 0.585406 1_1:-61831868 Msa0033960:CDS
TTCATTGAGTGGCAAGTCAG+TGG 0.585865 1_1:-61827719 Msa0033960:CDS
TGCAACAACTAAGCACAAGA+TGG 0.588619 1_1:+61827366 None:intergenic
AATCCCATTGACAATAGAGA+TGG 0.588744 1_1:-61832057 Msa0033960:CDS
GAGCAAGAAGAAGAGAGAAG+TGG 0.590725 1_1:+61834537 None:intergenic
CATCTTGCTTGATCCGCCAA+TGG 0.594402 1_1:+61827843 None:intergenic
CCATCAAGTGTAATAACACC+GGG 0.594542 1_1:+61834593 None:intergenic
ACCATCAAGTGTAATAACAC+CGG 0.597071 1_1:+61834592 None:intergenic
TTGTTGCAGAGTGTGCATGA+TGG 0.598722 1_1:-61834392 Msa0033960:intron
ACAGTTAACAGAGTAGTGTC+CGG 0.602771 1_1:+61827774 None:intergenic
GCAGGTCTTATTTGTGCACG+AGG 0.611952 1_1:+61832149 None:intergenic
GGATCAAGCAAGATGTCTGT+CGG 0.616205 1_1:-61827835 Msa0033960:CDS
TTGGAAATGCTATTCCGGGA+CGG 0.622396 1_1:-61832092 Msa0033960:CDS
TAGTGTCCGGAACCGTGCCA+TGG 0.623740 1_1:+61827787 None:intergenic
TGGTCATGCCGATGATTGGA+AGG 0.627013 1_1:-61834573 Msa0033960:CDS
GATGATTATGATGCATGAAG+TGG 0.632238 1_1:-61835107 Msa0033960:five_prime_UTR
ATCCAGTAGATGGTAAGCCA+TGG 0.634636 1_1:-61827804 Msa0033960:CDS
GTTGAGTCCGAATTTCAACC+CGG 0.640532 1_1:-61834611 Msa0033960:CDS
TAGATCACAAATGGAATACG+TGG 0.642073 1_1:-61835079 Msa0033960:five_prime_UTR
AGATGATCCATAGTCCTCAA+AGG 0.643096 1_1:+61828510 None:intergenic
GACAATAGAGATGGAAATGG+CGG 0.643121 1_1:-61832048 Msa0033960:CDS
TCTCAGAGCAGTTCATTGAG+TGG 0.649577 1_1:-61827730 Msa0033960:CDS
GAAGCAGAAAGAAAATATCA+CGG 0.656787 1_1:+61834369 None:intergenic
GTAGATGGTAAGCCATGGCA+CGG 0.658775 1_1:-61827799 Msa0033960:CDS
CACATCTTACCCATTAGAGT+AGG 0.661936 1_1:+61834328 None:intergenic
AGATCACAAATGGAATACGT+GGG 0.665653 1_1:-61835078 Msa0033960:five_prime_UTR
TGAAACATAAGTGCAACAGA+GGG 0.672670 1_1:+61833520 None:intergenic
TTGTGCATACCAGAACCTGA+AGG 0.682415 1_1:+61831838 None:intergenic
CCATCCAAGTATCTGCAGTG+TGG 0.694075 1_1:+61831868 None:intergenic
GATCACAAATGGAATACGTG+GGG 0.698603 1_1:-61835077 Msa0033960:five_prime_UTR
TTGTAAGATGGGTGGCTGTG+AGG 0.702871 1_1:-61832181 Msa0033960:intron
TTATGATGCATGAAGTGGCA+AGG 0.708279 1_1:-61835102 Msa0033960:five_prime_UTR
GCTGAAAATGAATTCAATGG+CGG 0.714687 1_1:-61834503 Msa0033960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATTCTTTTAATG+AGG + chr1_1:61829925-61829944 None:intergenic 10.0%
!! AAAATAAATTAAAATCAGTT+AGG - chr1_1:61829941-61829960 Msa0033960:intron 10.0%
!! AAATAAATTAAAATCAGTTA+GGG - chr1_1:61829942-61829961 Msa0033960:intron 10.0%
!!! TACATAACATTTTTTTTTTA+TGG - chr1_1:61832966-61832985 Msa0033960:intron 10.0%
!!! TTTTATGTTAAAGTATATTA+TGG - chr1_1:61833656-61833675 Msa0033960:intron 10.0%
!! TCAAATAGAATTAAAAAATA+GGG + chr1_1:61834958-61834977 None:intergenic 10.0%
!! TTCAAATAGAATTAAAAAAT+AGG + chr1_1:61834959-61834978 None:intergenic 10.0%
!!! ATTTTTCTTTTTTAAAAAAC+TGG - chr1_1:61835097-61835116 Msa0033960:five_prime_UTR 10.0%
!!! TTTAAGTTGTTTGATTTTTT+CGG - chr1_1:61828184-61828203 Msa0033960:intron 15.0%
!! AAAATGTTGAATATATAAAG+AGG - chr1_1:61828420-61828439 Msa0033960:intron 15.0%
!!! AAGTAATGATATTTTTATTG+AGG - chr1_1:61828736-61828755 Msa0033960:intron 15.0%
!!! AGTAATGATATTTTTATTGA+GGG - chr1_1:61828737-61828756 Msa0033960:intron 15.0%
!! ATTATTAAAACAACATAGAT+TGG - chr1_1:61829104-61829123 Msa0033960:intron 15.0%
!!! TTTGACTTTATTTAATCTTT+TGG - chr1_1:61829544-61829563 Msa0033960:intron 15.0%
!!! ATTTTTGTATAATCTGTTTT+AGG - chr1_1:61829676-61829695 Msa0033960:intron 15.0%
!!! AAATAAGTTGAAACAATTTA+TGG - chr1_1:61829766-61829785 Msa0033960:intron 15.0%
!! AATAAATTAAAATCAGTTAG+GGG - chr1_1:61829943-61829962 Msa0033960:intron 15.0%
!!! AAAATGTATAAAACATTTTC+AGG + chr1_1:61830947-61830966 None:intergenic 15.0%
!!! TGTTGTCTAATTTTTATTTT+AGG - chr1_1:61832436-61832455 Msa0033960:intron 15.0%
!!! GTTGTCTAATTTTTATTTTA+GGG - chr1_1:61832437-61832456 Msa0033960:intron 15.0%
!! AAAACATATTGTACATATAT+TGG + chr1_1:61832877-61832896 None:intergenic 15.0%
!!! CAATTTTAATATCATATATG+GGG + chr1_1:61833701-61833720 None:intergenic 15.0%
!!! CCAATTTTAATATCATATAT+GGG + chr1_1:61833702-61833721 None:intergenic 15.0%
!! TTATTAATCATAATGAATTC+TGG - chr1_1:61834096-61834115 Msa0033960:intron 15.0%
!!! ATTTTGTATTTCTGATATTA+TGG - chr1_1:61834158-61834177 Msa0033960:intron 15.0%
!! AAAAATAAAGCTAAAAAAGA+CGG + chr1_1:61834334-61834353 None:intergenic 15.0%
!!! AGCTTTATTTTTTATTTTTG+TGG - chr1_1:61834342-61834361 Msa0033960:CDS 15.0%
!! TAAAAACGAGTTTATATAAG+TGG + chr1_1:61827602-61827621 None:intergenic 20.0%
!!! TATTTAGTGGCTTAAAATTT+TGG - chr1_1:61828452-61828471 Msa0033960:intron 20.0%
!!! ATTTAGTGGCTTAAAATTTT+GGG - chr1_1:61828453-61828472 Msa0033960:intron 20.0%
!!! ATGATACTCTTTTAATAAGT+TGG - chr1_1:61828826-61828845 Msa0033960:intron 20.0%
!!! TTCATGTTTTTCAAATCTAA+GGG - chr1_1:61829328-61829347 Msa0033960:intron 20.0%
!! AGAATTTCTCTAACTTATTT+AGG + chr1_1:61829846-61829865 None:intergenic 20.0%
!! AATAAGTTAGAGAAATTCTT+AGG - chr1_1:61829847-61829866 Msa0033960:intron 20.0%
!!! TAATTATTTTAATGAGGTGT+TGG - chr1_1:61830059-61830078 Msa0033960:intron 20.0%
!!! AATTATTTTAATGAGGTGTT+GGG - chr1_1:61830060-61830079 Msa0033960:intron 20.0%
!! AAAGTTCTTTAGACTTAAAA+AGG + chr1_1:61830763-61830782 None:intergenic 20.0%
!!! ATAACTATGCCTTTTATTTA+AGG - chr1_1:61830874-61830893 Msa0033960:intron 20.0%
!!! TAACTATGCCTTTTATTTAA+GGG - chr1_1:61830875-61830894 Msa0033960:intron 20.0%
!! ATAGAAAAGCAAAATGATAA+TGG + chr1_1:61830970-61830989 None:intergenic 20.0%
!!! ATTTCTCTTATAGTTTTTCT+AGG + chr1_1:61831282-61831301 None:intergenic 20.0%
!!! ATATGTCATTGTTTCTTATA+TGG + chr1_1:61831443-61831462 None:intergenic 20.0%
!! AGGAAAAGATGAATTAATTA+AGG - chr1_1:61831734-61831753 Msa0033960:intron 20.0%
!! TGTAAATTCATTATTCACAT+AGG + chr1_1:61832142-61832161 None:intergenic 20.0%
!!! GATTTTGTGCATATAATTAT+TGG - chr1_1:61832168-61832187 Msa0033960:CDS 20.0%
!!! ATATGAAAGTATGAAACAAT+GGG + chr1_1:61832243-61832262 None:intergenic 20.0%
!! AGCTTATATATCCAATTATA+TGG + chr1_1:61832344-61832363 None:intergenic 20.0%
!!! TTTTCTTTTTGAACAGTAAA+AGG + chr1_1:61832573-61832592 None:intergenic 20.0%
!!! CTGATTTTAGAATGAAATAT+TGG - chr1_1:61832650-61832669 Msa0033960:intron 20.0%
!!! TTTTAGAATGAAATATTGGT+TGG - chr1_1:61832654-61832673 Msa0033960:intron 20.0%
!! ATTGTTTACCTAATTCTATA+TGG + chr1_1:61832710-61832729 None:intergenic 20.0%
!! GTATGAATATCATTAAGAAT+CGG + chr1_1:61832771-61832790 None:intergenic 20.0%
!! TATGTTGAAAGATATTTCTT+TGG + chr1_1:61832793-61832812 None:intergenic 20.0%
!!! TATATGTACAATATGTTTTC+TGG - chr1_1:61832878-61832897 Msa0033960:intron 20.0%
!! ATTATAAAAGGAAATTCTTG+TGG + chr1_1:61833341-61833360 None:intergenic 20.0%
!! CCCATATATGATATTAAAAT+TGG - chr1_1:61833699-61833718 Msa0033960:intron 20.0%
!!! GCCAATTTTAATATCATATA+TGG + chr1_1:61833703-61833722 None:intergenic 20.0%
!!! CATATTTTTTTGAATTCTCT+AGG - chr1_1:61833880-61833899 Msa0033960:intron 20.0%
!! AACTCAGTTAATTCAAAATA+GGG + chr1_1:61834021-61834040 None:intergenic 20.0%
!! ATTATATTTGAGAGAACTTA+TGG + chr1_1:61834393-61834412 None:intergenic 20.0%
! AAGTGTAAAGAGAATGTAAA+AGG - chr1_1:61827394-61827413 Msa0033960:three_prime_UTR 25.0%
! ACTTGAATGTGAATAACAAA+AGG + chr1_1:61827968-61827987 None:intergenic 25.0%
!!! TTTTTCGGTAATCATGTTAT+CGG - chr1_1:61828199-61828218 Msa0033960:intron 25.0%
!! TTTTAAGCCACTAAATATAC+CGG + chr1_1:61828449-61828468 None:intergenic 25.0%
! TCTCAATGATTGATATTGTT+TGG - chr1_1:61828558-61828577 Msa0033960:CDS 25.0%
! TATTCATAACAAATCATGAG+TGG - chr1_1:61828582-61828601 Msa0033960:CDS 25.0%
!! ATATCAACTCTTGATTTTAG+CGG - chr1_1:61828610-61828629 Msa0033960:intron 25.0%
! TACTTGGATCAATATAATAG+TGG - chr1_1:61828652-61828671 Msa0033960:intron 25.0%
!! TACAAAAACACTCTCTAAAA+AGG + chr1_1:61829061-61829080 None:intergenic 25.0%
!!! ATGAAGTTTTTTGGGAATTT+AGG + chr1_1:61829305-61829324 None:intergenic 25.0%
!!! CTTCATGTTTTTCAAATCTA+AGG - chr1_1:61829327-61829346 Msa0033960:intron 25.0%
!!! TCATGTTTTTCAAATCTAAG+GGG - chr1_1:61829329-61829348 Msa0033960:intron 25.0%
!!! TGTTTTTATATGCTATCATG+AGG - chr1_1:61829734-61829753 Msa0033960:intron 25.0%
!!! AATTCTTTTAATGAGGTGTT+GGG + chr1_1:61829918-61829937 None:intergenic 25.0%
!! TAATTCTTTTAATGAGGTGT+TGG + chr1_1:61829919-61829938 None:intergenic 25.0%
! TTGTCTTAATTGTTGTAAGA+TGG - chr1_1:61830220-61830239 Msa0033960:intron 25.0%
! TGTCTTAATTGTTGTAAGAT+GGG - chr1_1:61830221-61830240 Msa0033960:intron 25.0%
! ACAATTTATGATGACTATAG+TGG - chr1_1:61830436-61830455 Msa0033960:intron 25.0%
! ACAAATGTAACATCTTTAGT+TGG - chr1_1:61830594-61830613 Msa0033960:intron 25.0%
!! AATAAAAGGCATAGTTATCA+AGG + chr1_1:61830872-61830891 None:intergenic 25.0%
! AAAGTAAAACAGAAAATACG+AGG + chr1_1:61831014-61831033 None:intergenic 25.0%
! TGATATCTTTCATTAGAGAT+AGG - chr1_1:61831049-61831068 Msa0033960:intron 25.0%
! TAATTAGTTGGATAGAGATA+TGG - chr1_1:61831323-61831342 Msa0033960:intron 25.0%
!! AAATTTTAAATTGGGTGTGT+GGG + chr1_1:61831624-61831643 None:intergenic 25.0%
!! AGTGGCACAAATTTTAAATT+GGG + chr1_1:61831632-61831651 None:intergenic 25.0%
!! AAGTGGCACAAATTTTAAAT+TGG + chr1_1:61831633-61831652 None:intergenic 25.0%
! TTATCATCTTTATCCAAGTT+AGG + chr1_1:61831838-61831857 None:intergenic 25.0%
!! AATTCCTTTATTTGTCTCAA+TGG - chr1_1:61831971-61831990 Msa0033960:intron 25.0%
!! ATTCCTTTATTTGTCTCAAT+GGG - chr1_1:61831972-61831991 Msa0033960:intron 25.0%
!! GTTTTGCAAAGATATAGAAA+AGG + chr1_1:61832087-61832106 None:intergenic 25.0%
! GCTGTTAATGTTTATGAATT+GGG - chr1_1:61832203-61832222 Msa0033960:intron 25.0%
!! CATATGAAAGTATGAAACAA+TGG + chr1_1:61832244-61832263 None:intergenic 25.0%
! TACTTTCATATGATTTGAAG+TGG - chr1_1:61832252-61832271 Msa0033960:intron 25.0%
!! ACTTTCATATGATTTGAAGT+GGG - chr1_1:61832253-61832272 Msa0033960:intron 25.0%
! GGAAATTATCAACAAATGAA+GGG + chr1_1:61832411-61832430 None:intergenic 25.0%
! AGGAAATTATCAACAAATGA+AGG + chr1_1:61832412-61832431 None:intergenic 25.0%
!!! TCATTTGTTGATAATTTCCT+AGG - chr1_1:61832412-61832431 Msa0033960:intron 25.0%
! TAAAAATTAGACAACAACCT+AGG + chr1_1:61832432-61832451 None:intergenic 25.0%
! AAGATAGTTAAAATCAGCTT+CGG + chr1_1:61832624-61832643 None:intergenic 25.0%
!!! TTTCATTCTAAAATCAGCTT+CGG + chr1_1:61832647-61832666 None:intergenic 25.0%
! TTTACCTAATTCTATATGGA+GGG + chr1_1:61832706-61832725 None:intergenic 25.0%
!!! AAGTGGTATTTTTAAAACGT+TGG + chr1_1:61832910-61832929 None:intergenic 25.0%
!!! TTTTAAAAATACCACTTTGC+TGG - chr1_1:61832913-61832932 Msa0033960:intron 25.0%
! TTTAAAAATACCACTTTGCT+GGG - chr1_1:61832914-61832933 Msa0033960:intron 25.0%
! TATGCTTAACATTCAATTCA+TGG + chr1_1:61833102-61833121 None:intergenic 25.0%
! TATAAATTATTGAAAGCAGC+AGG + chr1_1:61833205-61833224 None:intergenic 25.0%
!! TTTATGGATCACTAAACTTT+TGG + chr1_1:61833280-61833299 None:intergenic 25.0%
! TCCAGAATAACTAAATGATA+GGG + chr1_1:61833769-61833788 None:intergenic 25.0%
! ATCCAGAATAACTAAATGAT+AGG + chr1_1:61833770-61833789 None:intergenic 25.0%
!! TTTTTCCATTTTCTGCATAA+GGG + chr1_1:61833854-61833873 None:intergenic 25.0%
!!! TTTTTTCCATTTTCTGCATA+AGG + chr1_1:61833855-61833874 None:intergenic 25.0%
! TTATGCAGAAAATGGAAAAA+AGG - chr1_1:61833854-61833873 Msa0033960:intron 25.0%
! TATGCAGAAAATGGAAAAAA+GGG - chr1_1:61833855-61833874 Msa0033960:intron 25.0%
! GAACTCAGTTAATTCAAAAT+AGG + chr1_1:61834022-61834041 None:intergenic 25.0%
!! TTTTGAATTAACTGAGTTCT+TGG - chr1_1:61834023-61834042 Msa0033960:intron 25.0%
! CTGTTTGATACACTATTTAA+AGG + chr1_1:61834856-61834875 None:intergenic 25.0%
! CATTTACGATTGTACTATAT+AGG - chr1_1:61834899-61834918 Msa0033960:five_prime_UTR 25.0%
! TTTGTTGATTGAACTTGAAG+TGG - chr1_1:61827494-61827513 Msa0033960:three_prime_UTR 30.0%
! CGAGTTTATATAAGTGGATT+TGG + chr1_1:61827596-61827615 None:intergenic 30.0%
! TGAATTCATTTTCAGCATCA+GGG + chr1_1:61827906-61827925 None:intergenic 30.0%
! TTGAATTCATTTTCAGCATC+AGG + chr1_1:61827907-61827926 None:intergenic 30.0%
GATGCTGAAAATGAATTCAA+TGG - chr1_1:61827907-61827926 Msa0033960:intron 30.0%
CAAAGAAAGAAATACCTTCA+CGG + chr1_1:61827944-61827963 None:intergenic 30.0%
GAAGCAGAAAGAAAATATCA+CGG + chr1_1:61828047-61828066 None:intergenic 30.0%
AGCTCAATAAATCAAACTCA+TGG + chr1_1:61828146-61828165 None:intergenic 30.0%
! ACCTATTTGATGACTAATCT+TGG - chr1_1:61828234-61828253 Msa0033960:intron 30.0%
! ACCAAGATTAGTCATCAAAT+AGG + chr1_1:61828238-61828257 None:intergenic 30.0%
! ATTTGATGACTAATCTTGGT+CGG - chr1_1:61828238-61828257 Msa0033960:intron 30.0%
TGAATATATAAAGAGGTGAC+CGG - chr1_1:61828427-61828446 Msa0033960:intron 30.0%
TATCAACAACGGATATTACT+GGG + chr1_1:61828534-61828553 None:intergenic 30.0%
TTATCAACAACGGATATTAC+TGG + chr1_1:61828535-61828554 None:intergenic 30.0%
!! CAATTTTGTTTCGTTCTACT+TGG - chr1_1:61828636-61828655 Msa0033960:intron 30.0%
GTTGCACTTATGTTTCAAAT+TGG - chr1_1:61828899-61828918 Msa0033960:intron 30.0%
CTTATGTTTCAAATTGGAGA+TGG - chr1_1:61828905-61828924 Msa0033960:intron 30.0%
GCAACTTACATTATGATAAG+AGG + chr1_1:61828933-61828952 None:intergenic 30.0%
ACTCAACAATGTATTCTTTG+AGG - chr1_1:61828956-61828975 Msa0033960:intron 30.0%
CTCAACAATGTATTCTTTGA+GGG - chr1_1:61828957-61828976 Msa0033960:intron 30.0%
!!! AAGGAGGATATTTTAGGTTT+TGG + chr1_1:61829154-61829173 None:intergenic 30.0%
! GTATTGAAGGAGGATATTTT+AGG + chr1_1:61829160-61829179 None:intergenic 30.0%
AACTCAAAATGTATTGAAGG+AGG + chr1_1:61829170-61829189 None:intergenic 30.0%
!!! ATTTTGAGTTCCCTCAAATT+AGG - chr1_1:61829180-61829199 Msa0033960:intron 30.0%
!!! TTTTGAGTTCCCTCAAATTA+GGG - chr1_1:61829181-61829200 Msa0033960:intron 30.0%
!!! AGTTTTTTGGGAATTTAGGA+GGG + chr1_1:61829301-61829320 None:intergenic 30.0%
!!! AAGTTTTTTGGGAATTTAGG+AGG + chr1_1:61829302-61829321 None:intergenic 30.0%
!!! ATGAAGCGATGAAGTTTTTT+GGG + chr1_1:61829313-61829332 None:intergenic 30.0%
GCATTTGGATAAACAACTTA+GGG - chr1_1:61829351-61829370 Msa0033960:intron 30.0%
AATAAGCTAAAAACAACTGG+TGG + chr1_1:61829466-61829485 None:intergenic 30.0%
GGAAATAAGCTAAAAACAAC+TGG + chr1_1:61829469-61829488 None:intergenic 30.0%
AAGTTATCTTGAAGAGCTTA+TGG + chr1_1:61829490-61829509 None:intergenic 30.0%
! TGATTACCATAAGCACTTTT+TGG + chr1_1:61829655-61829674 None:intergenic 30.0%
AAATTAAAATCAGTTAGGGG+TGG - chr1_1:61829946-61829965 Msa0033960:intron 30.0%
AGAGATCTTTCATAAAGATC+AGG + chr1_1:61830178-61830197 None:intergenic 30.0%
! GACATTATGCACTTTTCAAT+TGG - chr1_1:61830302-61830321 Msa0033960:intron 30.0%
TTCAATTGGAAATGCTATTC+CGG - chr1_1:61830316-61830335 Msa0033960:intron 30.0%
TTTCCATCTCTATTGTCAAT+GGG + chr1_1:61830362-61830381 None:intergenic 30.0%
ATTTCCATCTCTATTGTCAA+TGG + chr1_1:61830363-61830382 None:intergenic 30.0%
ATTGACAATAGAGATGGAAA+TGG - chr1_1:61830362-61830381 Msa0033960:intron 30.0%
CTCCTTAACTTTAACCATAT+CGG - chr1_1:61830410-61830429 Msa0033960:intron 30.0%
TTTCCTATAATCGTTCATAC+AGG - chr1_1:61830489-61830508 Msa0033960:intron 30.0%
AAACCTGTATGAACGATTAT+AGG + chr1_1:61830495-61830514 None:intergenic 30.0%
TATAATCGTTCATACAGGTT+TGG - chr1_1:61830494-61830513 Msa0033960:intron 30.0%
!! TATGCCTTTTATTTAAGGGT+TGG - chr1_1:61830879-61830898 Msa0033960:intron 30.0%
!!! AACATTTTCAGGTGAGAAAT+GGG + chr1_1:61830936-61830955 None:intergenic 30.0%
!!! AAACATTTTCAGGTGAGAAA+TGG + chr1_1:61830937-61830956 None:intergenic 30.0%
AGATCTAGCGATTAATTAGT+TGG - chr1_1:61831311-61831330 Msa0033960:intron 30.0%
!!! ATTGTTTTAAACCTTGCATG+AGG - chr1_1:61831461-61831480 Msa0033960:intron 30.0%
! AATTTTAAATTGGGTGTGTG+GGG + chr1_1:61831623-61831642 None:intergenic 30.0%
! CAAATTTTAAATTGGGTGTG+TGG + chr1_1:61831625-61831644 None:intergenic 30.0%
! TGCTTAATCATTTTGTGAAG+TGG + chr1_1:61831650-61831669 None:intergenic 30.0%
CAAAATGATTAAGCAGTGAT+TGG - chr1_1:61831655-61831674 Msa0033960:intron 30.0%
! AATTAAGGCATCTGTATAGA+AGG - chr1_1:61831749-61831768 Msa0033960:intron 30.0%
! ATTAAGGCATCTGTATAGAA+GGG - chr1_1:61831750-61831769 Msa0033960:intron 30.0%
CAATTTATTAGTGCCTAACT+TGG - chr1_1:61831822-61831841 Msa0033960:intron 30.0%
AGATTGACAAACACATTTGT+TGG - chr1_1:61831890-61831909 Msa0033960:CDS 30.0%
GATTGACAAACACATTTGTT+GGG - chr1_1:61831891-61831910 Msa0033960:CDS 30.0%
AATCCCATTGAGACAAATAA+AGG + chr1_1:61831978-61831997 None:intergenic 30.0%
ATATAGAAAAGGACACAATC+TGG + chr1_1:61832076-61832095 None:intergenic 30.0%
CGCTGTTAATGTTTATGAAT+TGG - chr1_1:61832202-61832221 Msa0033960:intron 30.0%
! CTTTCATATGATTTGAAGTG+GGG - chr1_1:61832254-61832273 Msa0033960:intron 30.0%
TAGGGATATACATTAAGCAT+TGG - chr1_1:61832455-61832474 Msa0033960:intron 30.0%
CATTAACTGAGAACAGAAAA+AGG + chr1_1:61832482-61832501 None:intergenic 30.0%
TCGGAAGATAGTTAATTGAT+AGG + chr1_1:61832605-61832624 None:intergenic 30.0%
AATTCTATATGGAGGGATTT+CGG + chr1_1:61832699-61832718 None:intergenic 30.0%
AAATCCCTCCATATAGAATT+AGG - chr1_1:61832699-61832718 Msa0033960:intron 30.0%
GTTTACCTAATTCTATATGG+AGG + chr1_1:61832707-61832726 None:intergenic 30.0%
!!! TGGTATTTTTAAAACGTTGG+TGG + chr1_1:61832907-61832926 None:intergenic 30.0%
TTAAAAATACCACTTTGCTG+GGG - chr1_1:61832915-61832934 Msa0033960:intron 30.0%
ATTACATTAACCTACCTAGT+TGG + chr1_1:61833245-61833264 None:intergenic 30.0%
TCCATCAAGGATGAAAAAAT+GGG + chr1_1:61833377-61833396 None:intergenic 30.0%
ATCCATCAAGGATGAAAAAA+TGG + chr1_1:61833378-61833397 None:intergenic 30.0%
TGTTTCAACGTATCTAATAC+TGG - chr1_1:61833412-61833431 Msa0033960:intron 30.0%
GTTTCAACGTATCTAATACT+GGG - chr1_1:61833413-61833432 Msa0033960:intron 30.0%
! TGTAAGAGAGCTCTAATTTA+GGG - chr1_1:61833487-61833506 Msa0033960:intron 30.0%
TATGTAGAGGACAAAAGTAA+GGG - chr1_1:61833622-61833641 Msa0033960:intron 30.0%
ACCCTATCATTTAGTTATTC+TGG - chr1_1:61833765-61833784 Msa0033960:intron 30.0%
!! CTCTATAACAGGTTTTGTAA+AGG - chr1_1:61833821-61833840 Msa0033960:intron 30.0%
CTCTTCTAAATGCATCATAA+AGG + chr1_1:61833951-61833970 None:intergenic 30.0%
AATAGGGATTCAAACATAAG+AGG + chr1_1:61834005-61834024 None:intergenic 30.0%
AAATCCTTCTAGATAACTCA+TGG - chr1_1:61834052-61834071 Msa0033960:intron 30.0%
!! ATCATAATGAATTCTGGTTC+TGG - chr1_1:61834102-61834121 Msa0033960:intron 30.0%
TGTAGTTTAGTATGTGACTT+GGG + chr1_1:61834138-61834157 None:intergenic 30.0%
TTGTAGTTTAGTATGTGACT+TGG + chr1_1:61834139-61834158 None:intergenic 30.0%
!! GCTATTTTGTCAAACAGTTT+TGG - chr1_1:61834187-61834206 Msa0033960:intron 30.0%
TTGGATAAGATATCTTCTAC+CGG - chr1_1:61834212-61834231 Msa0033960:intron 30.0%
TTGCAATACCTTCTTTACAA+AGG - chr1_1:61834241-61834260 Msa0033960:intron 30.0%
CGGAGAAATATTTCTTATGA+AGG + chr1_1:61834274-61834293 None:intergenic 30.0%
!!! GTTTGGTTGTTTTAGCTATT+GGG + chr1_1:61834302-61834321 None:intergenic 30.0%
!!! AGTTTGGTTGTTTTAGCTAT+TGG + chr1_1:61834303-61834322 None:intergenic 30.0%
CATGCAAATTTATACCTTAC+AGG - chr1_1:61834535-61834554 Msa0033960:CDS 30.0%
ACTATTTAAAGGTTCTCCAT+TGG + chr1_1:61834845-61834864 None:intergenic 30.0%
GTTCAATAGTCCAAGTATAA+TGG - chr1_1:61835020-61835039 Msa0033960:five_prime_UTR 30.0%
TAGATCACAAATGGAATACG+TGG - chr1_1:61827334-61827353 Msa0033960:three_prime_UTR 35.0%
AGATCACAAATGGAATACGT+GGG - chr1_1:61827335-61827354 Msa0033960:three_prime_UTR 35.0%
! TTGTGTCTTGTTGCTAACTA+AGG + chr1_1:61827374-61827393 None:intergenic 35.0%
!! AACAAGTGCTGGTGAAAAAA+AGG - chr1_1:61827424-61827443 Msa0033960:three_prime_UTR 35.0%
ATTTGATAGATCGCGATTTG+TGG + chr1_1:61827567-61827586 None:intergenic 35.0%
TGTTTATTCACACGAAGAGT+CGG - chr1_1:61827744-61827763 Msa0033960:CDS 35.0%
! AATAACACCGGGTTGAAATT+CGG + chr1_1:61827812-61827831 None:intergenic 35.0%
ACCATCAAGTGTAATAACAC+CGG + chr1_1:61827824-61827843 None:intergenic 35.0%
ATCAATGTCCTTCCAATCAT+CGG + chr1_1:61827851-61827870 None:intergenic 35.0%
ATGATTGGAAGGACATTGAT+GGG - chr1_1:61827851-61827870 Msa0033960:CDS 35.0%
GCTGAAAATGAATTCAATGG+CGG - chr1_1:61827910-61827929 Msa0033960:intron 35.0%
!! TTCTTTCTGCTTCAAGTTGA+TGG - chr1_1:61828054-61828073 Msa0033960:intron 35.0%
GTGATTATGCCTACTCTAAT+GGG - chr1_1:61828076-61828095 Msa0033960:intron 35.0%
! TTTGATGACTAATCTTGGTC+GGG - chr1_1:61828239-61828258 Msa0033960:intron 35.0%
ATTGAGACGCTTATCAACAA+CGG + chr1_1:61828545-61828564 None:intergenic 35.0%
ACTCTTATATCCCATCATGT+TGG + chr1_1:61828764-61828783 None:intergenic 35.0%
TGAAACATAAGTGCAACAGA+GGG + chr1_1:61828896-61828915 None:intergenic 35.0%
TTGAAACATAAGTGCAACAG+AGG + chr1_1:61828897-61828916 None:intergenic 35.0%
!!! TTTTAGGTTTTGGAGGACTT+GGG + chr1_1:61829144-61829163 None:intergenic 35.0%
!!! ATTTTAGGTTTTGGAGGACT+TGG + chr1_1:61829145-61829164 None:intergenic 35.0%
!!! GAGGATATTTTAGGTTTTGG+AGG + chr1_1:61829151-61829170 None:intergenic 35.0%
GGGAACTCAAAATGTATTGA+AGG + chr1_1:61829173-61829192 None:intergenic 35.0%
! TTTGAGTTCCCTCAAATTAG+GGG - chr1_1:61829182-61829201 Msa0033960:intron 35.0%
ACAAAATCCCCCTAATTTGA+GGG + chr1_1:61829193-61829212 None:intergenic 35.0%
TACAAAATCCCCCTAATTTG+AGG + chr1_1:61829194-61829213 None:intergenic 35.0%
TGTAAGGTATGAAGGGATTT+GGG + chr1_1:61829251-61829270 None:intergenic 35.0%
! GAGAAAGTGTAAGGTATGAA+GGG + chr1_1:61829258-61829277 None:intergenic 35.0%
! AAAAGGAAGGAGAAAGTGTA+AGG + chr1_1:61829267-61829286 None:intergenic 35.0%
!!! TTTTTTGGGAATTTAGGAGG+GGG + chr1_1:61829299-61829318 None:intergenic 35.0%
!!! GTTTTTTGGGAATTTAGGAG+GGG + chr1_1:61829300-61829319 None:intergenic 35.0%
!!! CATGAAGCGATGAAGTTTTT+TGG + chr1_1:61829314-61829333 None:intergenic 35.0%
!! TTTCAAATCTAAGGGGCATT+TGG - chr1_1:61829336-61829355 Msa0033960:intron 35.0%
GGCATTTGGATAAACAACTT+AGG - chr1_1:61829350-61829369 Msa0033960:intron 35.0%
TGACTGTTTGAGAGAGTTTA+TGG - chr1_1:61829422-61829441 Msa0033960:intron 35.0%
!! ACACTTCCAAAAAGTGCTTA+TGG - chr1_1:61829646-61829665 Msa0033960:intron 35.0%
AGGTGTAAGAATGACATGTT+AGG + chr1_1:61829883-61829902 None:intergenic 35.0%
!!! ATGAGGTGTTGGGTTTTAAT+TGG + chr1_1:61830070-61830089 None:intergenic 35.0%
TGCTGATCAGTTAAAGAAAG+TGG - chr1_1:61829972-61829991 Msa0033960:intron 35.0%
GCTGATCAGTTAAAGAAAGT+GGG - chr1_1:61829973-61829992 Msa0033960:intron 35.0%
CTGATCAGTTAAAGAAAGTG+GGG - chr1_1:61829974-61829993 Msa0033960:intron 35.0%
AAGAAGAGAGAGAAAACATC+AGG - chr1_1:61829998-61830017 Msa0033960:intron 35.0%
!!! ATGAGGTGTTGGGTTTTAAT+TGG - chr1_1:61830070-61830089 Msa0033960:intron 35.0%
CTTAATTGTTGTAAGATGGG+TGG - chr1_1:61830224-61830243 Msa0033960:intron 35.0%
TCAATTGGAAATGCTATTCC+GGG - chr1_1:61830317-61830336 Msa0033960:intron 35.0%
AATCCCATTGACAATAGAGA+TGG - chr1_1:61830356-61830375 Msa0033960:intron 35.0%
AGCCGATATGGTTAAAGTTA+AGG + chr1_1:61830415-61830434 None:intergenic 35.0%
TCATAAATTGTCAGCCGATA+TGG + chr1_1:61830427-61830446 None:intergenic 35.0%
AGGCATAAAGATCAACCAAA+TGG + chr1_1:61830520-61830539 None:intergenic 35.0%
ATTTGGTTGATCTTTATGCC+TGG - chr1_1:61830519-61830538 Msa0033960:intron 35.0%
AACGAGATTAAAACAGCAAG+TGG - chr1_1:61830656-61830675 Msa0033960:intron 35.0%
TCATGAAGCAAACTACTTGA+TGG + chr1_1:61830724-61830743 None:intergenic 35.0%
!! AAGTAGTTTGCTTCATGACT+TGG - chr1_1:61830726-61830745 Msa0033960:intron 35.0%
TGCACCAACCCTTAAATAAA+AGG + chr1_1:61830886-61830905 None:intergenic 35.0%
CGAGGTAGATAAGTGTTAAA+AGG + chr1_1:61830996-61831015 None:intergenic 35.0%
TTAGAGATAGGATGTTGTGT+TGG - chr1_1:61831061-61831080 Msa0033960:intron 35.0%
AAATGACAACCTTAGAGAGA+AGG - chr1_1:61831116-61831135 Msa0033960:intron 35.0%
AGCACCTATCATAGAAAAGA+TGG - chr1_1:61831146-61831165 Msa0033960:intron 35.0%
ACCTATCATAGAAAAGATGG+TGG - chr1_1:61831149-61831168 Msa0033960:intron 35.0%
! TCCACCATCTTTTCTATGAT+AGG + chr1_1:61831153-61831172 None:intergenic 35.0%
!! TAGAAAAGATGGTGGAAACT+CGG - chr1_1:61831157-61831176 Msa0033960:intron 35.0%
CTAATCTACTTTCCTCACTA+GGG + chr1_1:61831223-61831242 None:intergenic 35.0%
TCTAATCTACTTTCCTCACT+AGG + chr1_1:61831224-61831243 None:intergenic 35.0%
AGTGAGGAAAGTAGATTAGA+TGG - chr1_1:61831224-61831243 Msa0033960:intron 35.0%
AGGAAAGTAGATTAGATGGA+GGG - chr1_1:61831228-61831247 Msa0033960:intron 35.0%
! ATTTGATAGAACGTGTCGTT+TGG - chr1_1:61831347-61831366 Msa0033960:intron 35.0%
ATAATTGACATCCTCATGCA+AGG + chr1_1:61831475-61831494 None:intergenic 35.0%
ATTTGACATGGCTAAGCTAA+AGG + chr1_1:61831504-61831523 None:intergenic 35.0%
TAAGATTGCTTCTTCCACAT+TGG - chr1_1:61831711-61831730 Msa0033960:intron 35.0%
! ATTCATCTTTTCCTCCAATG+TGG + chr1_1:61831728-61831747 None:intergenic 35.0%
! TTAAGGCATCTGTATAGAAG+GGG - chr1_1:61831751-61831770 Msa0033960:intron 35.0%
TATAGAAGGGGACAAATAGA+TGG - chr1_1:61831763-61831782 Msa0033960:intron 35.0%
ACTTCTTATGTTGAGAATCC+TGG + chr1_1:61831925-61831944 None:intergenic 35.0%
TTCTGTTTGTGGTCAAAATG+CGG - chr1_1:61832013-61832032 Msa0033960:intron 35.0%
AATGTGAGACGTATCTTCTT+TGG + chr1_1:61832317-61832336 None:intergenic 35.0%
TCACATTGCGACCATATAAT+TGG - chr1_1:61832330-61832349 Msa0033960:intron 35.0%
TAAGCTATAACCCTACAATG+TGG - chr1_1:61832358-61832377 Msa0033960:intron 35.0%
AAGCTATAACCCTACAATGT+GGG - chr1_1:61832359-61832378 Msa0033960:intron 35.0%
GATGTTTAACCCACATTGTA+GGG + chr1_1:61832371-61832390 None:intergenic 35.0%
AGATGTTTAACCCACATTGT+AGG + chr1_1:61832372-61832391 None:intergenic 35.0%
!! AATATTGGTTGGTAGTGTAG+TGG - chr1_1:61832665-61832684 Msa0033960:intron 35.0%
ATTCTATATGGAGGGATTTC+GGG + chr1_1:61832698-61832717 None:intergenic 35.0%
!!! GTGGAAGATGTTTGTTTTTG+CGG - chr1_1:61832937-61832956 Msa0033960:intron 35.0%
!!! TGGAAGATGTTTGTTTTTGC+GGG - chr1_1:61832938-61832957 Msa0033960:intron 35.0%
CTGAGGACATAAATGATGTA+TGG + chr1_1:61833145-61833164 None:intergenic 35.0%
CATACATCATTTATGTCCTC+AGG - chr1_1:61833143-61833162 Msa0033960:intron 35.0%
! TAATTAGTGCTGTTCCAACT+AGG - chr1_1:61833228-61833247 Msa0033960:intron 35.0%
! CTAAACTTTTGGCACTTAGT+GGG + chr1_1:61833269-61833288 None:intergenic 35.0%
! ACTAAACTTTTGGCACTTAG+TGG + chr1_1:61833270-61833289 None:intergenic 35.0%
! ATCCATAAAAGAAGCATGAC+TGG - chr1_1:61833291-61833310 Msa0033960:intron 35.0%
! AACCAGTCATGCTTCTTTTA+TGG + chr1_1:61833296-61833315 None:intergenic 35.0%
!! CATGACTGGTTTGTTTCTTA+TGG - chr1_1:61833305-61833324 Msa0033960:intron 35.0%
!!! ACCCATTTTTTCATCCTTGA+TGG - chr1_1:61833373-61833392 Msa0033960:intron 35.0%
! TAACTTTTACTCGACTCCAA+TGG - chr1_1:61833437-61833456 Msa0033960:intron 35.0%
! GTGTAAGAGAGCTCTAATTT+AGG - chr1_1:61833486-61833505 Msa0033960:intron 35.0%
TTGACGATACATGTATGTAG+AGG - chr1_1:61833609-61833628 Msa0033960:intron 35.0%
GTATGTAGAGGACAAAAGTA+AGG - chr1_1:61833621-61833640 Msa0033960:intron 35.0%
CTCACATGATTCTCTATAAC+AGG - chr1_1:61833810-61833829 Msa0033960:intron 35.0%
TAGTCCATGAGTTATCTAGA+AGG + chr1_1:61834059-61834078 None:intergenic 35.0%
GTAGTTTAGTATGTGACTTG+GGG + chr1_1:61834137-61834156 None:intergenic 35.0%
!!! TTGTCAAACAGTTTTGGCTT+TGG - chr1_1:61834193-61834212 Msa0033960:intron 35.0%
!! GAAGGTATTGCAAAACAAAC+CGG + chr1_1:61834234-61834253 None:intergenic 35.0%
GCAAGTTTCCTTTGTAAAGA+AGG + chr1_1:61834252-61834271 None:intergenic 35.0%
!! AAAGACGGCACTTTAAAGTT+TGG + chr1_1:61834319-61834338 None:intergenic 35.0%
! TTTTGTGGATGTAGTTGAAG+TGG - chr1_1:61834357-61834376 Msa0033960:CDS 35.0%
! AACACGCATGAATGTCATTT+AGG - chr1_1:61834492-61834511 Msa0033960:CDS 35.0%
ACTACTCTGTTAACTGTGAT+TGG - chr1_1:61834645-61834664 Msa0033960:CDS 35.0%
CTACTCTGTTAACTGTGATT+GGG - chr1_1:61834646-61834665 Msa0033960:CDS 35.0%
!! CTGCTCTGAGATATATCAAT+CGG + chr1_1:61834674-61834693 None:intergenic 35.0%
TGTCTGTGTTTGTGAGTTAT+CGG - chr1_1:61834789-61834808 Msa0033960:five_prime_UTR 35.0%
TGTATCAAACAGCTTGAGTT+TGG - chr1_1:61834864-61834883 Msa0033960:five_prime_UTR 35.0%
GTATCAAACAGCTTGAGTTT+GGG - chr1_1:61834865-61834884 Msa0033960:five_prime_UTR 35.0%
AGATGGAACTCCATTATACT+TGG + chr1_1:61835033-61835052 None:intergenic 35.0%
! AACGTGCAATTTCTTTTCAC+AGG - chr1_1:61835069-61835088 Msa0033960:five_prime_UTR 35.0%
! ACGTGCAATTTCTTTTCACA+GGG - chr1_1:61835070-61835089 Msa0033960:five_prime_UTR 35.0%
TTATGATGCATGAAGTGGCA+AGG - chr1_1:61827311-61827330 Msa0033960:three_prime_UTR 40.0%
GATCACAAATGGAATACGTG+GGG - chr1_1:61827336-61827355 Msa0033960:three_prime_UTR 40.0%
AAGGAAAATGCAACAAGTGC+TGG - chr1_1:61827413-61827432 Msa0033960:three_prime_UTR 40.0%
GTTGATTGAACTTGAAGTGG+TGG - chr1_1:61827497-61827516 Msa0033960:three_prime_UTR 40.0%
GTTTATTCACACGAAGAGTC+GGG - chr1_1:61827745-61827764 Msa0033960:CDS 40.0%
CCATCAAGTGTAATAACACC+GGG + chr1_1:61827823-61827842 None:intergenic 40.0%
GATGATTGGAAGGACATTGA+TGG - chr1_1:61827850-61827869 Msa0033960:CDS 40.0%
AGCAAGAAGAAGAGAGAAGT+GGG + chr1_1:61827878-61827897 None:intergenic 40.0%
GGTGATTATGCCTACTCTAA+TGG - chr1_1:61828075-61828094 Msa0033960:intron 40.0%
CACATCTTACCCATTAGAGT+AGG + chr1_1:61828088-61828107 None:intergenic 40.0%
! TTGATGACTAATCTTGGTCG+GGG - chr1_1:61828240-61828259 Msa0033960:intron 40.0%
ATGGGAAAAACGTGGTTAAG+CGG + chr1_1:61828305-61828324 None:intergenic 40.0%
!!! GAACTCGAGACCTTGTTTTA+GGG - chr1_1:61828336-61828355 Msa0033960:intron 40.0%
CTCAAACTTGATCCCAGTAT+TGG + chr1_1:61828370-61828389 None:intergenic 40.0%
ATACTGGGATCAAGTTTGAG+TGG - chr1_1:61828370-61828389 Msa0033960:intron 40.0%
TTATTGAGGGTCCAACATGA+TGG - chr1_1:61828750-61828769 Msa0033960:intron 40.0%
TATTGAGGGTCCAACATGAT+GGG - chr1_1:61828751-61828770 Msa0033960:intron 40.0%
TATTTGCGAGTTTGGATGGT+AGG - chr1_1:61828982-61829001 Msa0033960:intron 40.0%
ATTTGCGAGTTTGGATGGTA+GGG - chr1_1:61828983-61829002 Msa0033960:intron 40.0%
TTGAGTTCCCTCAAATTAGG+GGG - chr1_1:61829183-61829202 Msa0033960:intron 40.0%
GTGTAAGGTATGAAGGGATT+TGG + chr1_1:61829252-61829271 None:intergenic 40.0%
! GGAGAAAGTGTAAGGTATGA+AGG + chr1_1:61829259-61829278 None:intergenic 40.0%
GGGGAATTTGAGAAAAAGGA+AGG + chr1_1:61829280-61829299 None:intergenic 40.0%
TAAACAACTTAGGGCCTGTT+TGG - chr1_1:61829360-61829379 Msa0033960:intron 40.0%
TCATATACGTCCATCCAAAC+AGG + chr1_1:61829377-61829396 None:intergenic 40.0%
!!! GTGTTGGGTTTTAATTGGCT+AGG + chr1_1:61830075-61830094 None:intergenic 40.0%
TTAAAATCAGTTAGGGGTGG+TGG - chr1_1:61829949-61829968 Msa0033960:intron 40.0%
!!! GTGTTGGGTTTTAATTGGCT+GGG - chr1_1:61830075-61830094 Msa0033960:intron 40.0%
TGCACAAATAAGACCTGCAA+AGG - chr1_1:61830269-61830288 Msa0033960:intron 40.0%
GACAATAGAGATGGAAATGG+CGG - chr1_1:61830365-61830384 Msa0033960:intron 40.0%
!!! GAGCTATTTTTCATGAGACG+TGG - chr1_1:61830458-61830477 Msa0033960:intron 40.0%
TTCATACAGGTTTGGCCATT+TGG - chr1_1:61830502-61830521 Msa0033960:intron 40.0%
GTCTGTAGCAATAGTGAATC+CGG - chr1_1:61830803-61830822 Msa0033960:intron 40.0%
GAGTGAAGTCATTCAAGCAA+TGG + chr1_1:61830829-61830848 None:intergenic 40.0%
ACAACCTTAGAGAGAAGGTT+GGG - chr1_1:61831121-61831140 Msa0033960:intron 40.0%
CACTTATAGATTCCCTAGTG+AGG - chr1_1:61831208-61831227 Msa0033960:intron 40.0%
GAGGAAAGTAGATTAGATGG+AGG - chr1_1:61831227-61831246 Msa0033960:intron 40.0%
GAGGGTAGTCAAATCATTAG+AGG - chr1_1:61831246-61831265 Msa0033960:intron 40.0%
! AAGCATTTTCCCACTAAGTG+GGG + chr1_1:61831386-61831405 None:intergenic 40.0%
! CAAGCATTTTCCCACTAAGT+GGG + chr1_1:61831387-61831406 None:intergenic 40.0%
AGCTTAGCCATGTCAAATCA+AGG - chr1_1:61831506-61831525 Msa0033960:intron 40.0%
! ACGCAAACCTTGATTTGACA+TGG + chr1_1:61831516-61831535 None:intergenic 40.0%
! ATGTTGAGAATCCTGGTTTG+TGG + chr1_1:61831918-61831937 None:intergenic 40.0%
CAATCACTTCGTTCTGTTTG+TGG - chr1_1:61832002-61832021 Msa0033960:intron 40.0%
!! CAATCTGGTTTGGCATAATG+AGG + chr1_1:61832061-61832080 None:intergenic 40.0%
GAAAAGGACACAATCTGGTT+TGG + chr1_1:61832071-61832090 None:intergenic 40.0%
!!! GGAAGATGTTTGTTTTTGCG+GGG - chr1_1:61832939-61832958 Msa0033960:intron 40.0%
GAGAGACTCAATATCCATCA+AGG + chr1_1:61833390-61833409 None:intergenic 40.0%
TTTACTCGACTCCAATGGAA+TGG - chr1_1:61833442-61833461 Msa0033960:intron 40.0%
TTACTCGACTCCAATGGAAT+GGG - chr1_1:61833443-61833462 Msa0033960:intron 40.0%
ATGCAGAAAGCTCGCATTTA+AGG + chr1_1:61833739-61833758 None:intergenic 40.0%
GAGAACCCTTATGCAGAAAA+TGG - chr1_1:61833846-61833865 Msa0033960:intron 40.0%
TTGAATTCTCTAGGCCTTTG+AGG - chr1_1:61833889-61833908 Msa0033960:intron 40.0%
AGATGATCCATAGTCCTCAA+AGG + chr1_1:61833906-61833925 None:intergenic 40.0%
!!! GTTGTTTTAGCTATTGGGCA+TGG + chr1_1:61834297-61834316 None:intergenic 40.0%
ACAGTTAACAGAGTAGTGTC+CGG + chr1_1:61834642-61834661 None:intergenic 40.0%
GTCTGTGTTTGTGAGTTATC+GGG - chr1_1:61834790-61834809 Msa0033960:five_prime_UTR 40.0%
AAGGTTCTCCATTGGAGTAA+AGG + chr1_1:61834837-61834856 None:intergenic 40.0%
TGCAACAACTAAGCACAAGA+TGG + chr1_1:61835050-61835069 None:intergenic 40.0%
! CGTGCAATTTCTTTTCACAG+GGG - chr1_1:61835071-61835090 Msa0033960:five_prime_UTR 40.0%
! GTGCAATTTCTTTTCACAGG+GGG - chr1_1:61835072-61835091 Msa0033960:five_prime_UTR 40.0%
GTGGCAAGGTAGATCACAAA+TGG - chr1_1:61827325-61827344 Msa0033960:three_prime_UTR 45.0%
! GTGCTTGACTTTTCTGAGCT+TGG + chr1_1:61827543-61827562 None:intergenic 45.0%
CTCAACATGAATCTCTGACC+CGG + chr1_1:61827788-61827807 None:intergenic 45.0%
GTTGAGTCCGAATTTCAACC+CGG - chr1_1:61827802-61827821 Msa0033960:CDS 45.0%
!! CCCGGTGTTATTACACTTGA+TGG - chr1_1:61827820-61827839 Msa0033960:CDS 45.0%
! TTGATGGTCATGCCGATGAT+TGG - chr1_1:61827836-61827855 Msa0033960:CDS 45.0%
GAGCAAGAAGAAGAGAGAAG+TGG + chr1_1:61827879-61827898 None:intergenic 45.0%
TTGTTGCAGAGTGTGCATGA+TGG - chr1_1:61828021-61828040 Msa0033960:intron 45.0%
TGGGAAAAACGTGGTTAAGC+GGG + chr1_1:61828304-61828323 None:intergenic 45.0%
ACTTGTGGATGGGAAAAACG+TGG + chr1_1:61828313-61828332 None:intergenic 45.0%
!!! CGAACTCGAGACCTTGTTTT+AGG - chr1_1:61828335-61828354 Msa0033960:intron 45.0%
! CTTGATCCCAGTATTGGACT+CGG + chr1_1:61828364-61828383 None:intergenic 45.0%
GAGGTGACCGGTATATTTAG+TGG - chr1_1:61828439-61828458 Msa0033960:intron 45.0%
AATGCTCCAAAACCACAGGA+AGG + chr1_1:61828493-61828512 None:intergenic 45.0%
GGTTAATGCTCCAAAACCAC+AGG + chr1_1:61828497-61828516 None:intergenic 45.0%
CAACGGATATTACTGGGAGT+CGG + chr1_1:61828528-61828547 None:intergenic 45.0%
TGAGGGTCTATTTGCGAGTT+TGG - chr1_1:61828974-61828993 Msa0033960:intron 45.0%
GGTCTATTTGCGAGTTTGGA+TGG - chr1_1:61828978-61828997 Msa0033960:intron 45.0%
TTTGCGAGTTTGGATGGTAG+GGG - chr1_1:61828984-61829003 Msa0033960:intron 45.0%
AGGTATGAAGGGATTTGGGA+GGG + chr1_1:61829247-61829266 None:intergenic 45.0%
AAGGTATGAAGGGATTTGGG+AGG + chr1_1:61829248-61829267 None:intergenic 45.0%
GGAGGGGGAATTTGAGAAAA+AGG + chr1_1:61829284-61829303 None:intergenic 45.0%
!!! GGTGTTGGGTTTTAATTGGC+TGG - chr1_1:61830074-61830093 Msa0033960:intron 45.0%
GGGTGTAAGAATGACGTGTT+AGG - chr1_1:61830095-61830114 Msa0033960:intron 45.0%
GTCAACTTCATGACCTTTGC+AGG + chr1_1:61830285-61830304 None:intergenic 45.0%
TTGGAAATGCTATTCCGGGA+CGG - chr1_1:61830321-61830340 Msa0033960:intron 45.0%
GAATCCACACTGCAGATACT+TGG - chr1_1:61830541-61830560 Msa0033960:intron 45.0%
TTGTGCATACCAGAACCTGA+AGG + chr1_1:61830578-61830597 None:intergenic 45.0%
GAAGTCATTCAAGCAATGGC+CGG + chr1_1:61830825-61830844 None:intergenic 45.0%
AGGATGTTGTGTTGGATGTG+TGG - chr1_1:61831069-61831088 Msa0033960:intron 45.0%
GACAACCTTAGAGAGAAGGT+TGG - chr1_1:61831120-61831139 Msa0033960:intron 45.0%
CAACCTTAGAGAGAAGGTTG+GGG - chr1_1:61831122-61831141 Msa0033960:intron 45.0%
AAACTCGGCTTAGGTGGTTT+GGG - chr1_1:61831172-61831191 Msa0033960:intron 45.0%
! ATTTTCCCACTAAGTGGGGT+CGG + chr1_1:61831382-61831401 None:intergenic 45.0%
! CCAAGCATTTTCCCACTAAG+TGG + chr1_1:61831388-61831407 None:intergenic 45.0%
CCACTTAGTGGGAAAATGCT+TGG - chr1_1:61831385-61831404 Msa0033960:intron 45.0%
GATTGCTTCTTCCACATTGG+AGG - chr1_1:61831714-61831733 Msa0033960:intron 45.0%
AGAAGGGGACAAATAGATGG+AGG - chr1_1:61831766-61831785 Msa0033960:intron 45.0%
GAAGGGGACAAATAGATGGA+GGG - chr1_1:61831767-61831786 Msa0033960:intron 45.0%
! ATTTGTTGGGACCACAAACC+AGG - chr1_1:61831904-61831923 Msa0033960:CDS 45.0%
GCGGCATTTCTGCACAAAAT+AGG - chr1_1:61832032-61832051 Msa0033960:intron 45.0%
ATTCTAGTGCACAGAACGAC+TGG - chr1_1:61832502-61832521 Msa0033960:intron 45.0%
AGCAGCTTTACAGTTCACTC+AGG - chr1_1:61832543-61832562 Msa0033960:intron 45.0%
AAAATACCACTTTGCTGGGG+TGG - chr1_1:61832918-61832937 Msa0033960:intron 45.0%
!!! AGATGTTTGTTTTTGCGGGG+TGG - chr1_1:61832942-61832961 Msa0033960:intron 45.0%
!!! GATGTTTGTTTTTGCGGGGT+GGG - chr1_1:61832943-61832962 Msa0033960:intron 45.0%
! TAGTGCTGTTCCAACTAGGT+AGG - chr1_1:61833232-61833251 Msa0033960:intron 45.0%
TACTCGACTCCAATGGAATG+GGG - chr1_1:61833444-61833463 Msa0033960:intron 45.0%
AGCTCATTTCCCCATTCCAT+TGG + chr1_1:61833456-61833475 None:intergenic 45.0%
!! CATTTAAGGTGCTGCGACTA+AGG + chr1_1:61833725-61833744 None:intergenic 45.0%
GACTATGGATCATCTGCAAC+AGG - chr1_1:61833911-61833930 Msa0033960:intron 45.0%
!!! GTTTTAGCTATTGGGCATGG+CGG + chr1_1:61834294-61834313 None:intergenic 45.0%
TGTGGATGTAGTTGAAGTGG+AGG - chr1_1:61834360-61834379 Msa0033960:CDS 45.0%
GTGGATGTAGTTGAAGTGGA+GGG - chr1_1:61834361-61834380 Msa0033960:CDS 45.0%
TGCGTGTTTGCATCATGTGT+TGG + chr1_1:61834480-61834499 None:intergenic 45.0%
GGTGAATTGCACATCCTGTA+AGG + chr1_1:61834552-61834571 None:intergenic 45.0%
CAGGATGTGCAATTCACCAT+TGG - chr1_1:61834554-61834573 Msa0033960:CDS 45.0%
GATGTGCAATTCACCATTGG+CGG - chr1_1:61834557-61834576 Msa0033960:CDS 45.0%
GGATCAAGCAAGATGTCTGT+CGG - chr1_1:61834578-61834597 Msa0033960:CDS 45.0%
GGATTCTGGTATCCAGTAGA+TGG - chr1_1:61834599-61834618 Msa0033960:CDS 45.0%
ATCCAGTAGATGGTAAGCCA+TGG - chr1_1:61834609-61834628 Msa0033960:CDS 45.0%
TCTCAGAGCAGTTCATTGAG+TGG - chr1_1:61834683-61834702 Msa0033960:CDS 45.0%
TTCATTGAGTGGCAAGTCAG+TGG - chr1_1:61834694-61834713 Msa0033960:CDS 45.0%
ACTCAGCATCAAGTAGCTCA+TGG - chr1_1:61834717-61834736 Msa0033960:CDS 45.0%
GGAGTAAAGGCTACACTCTT+GGG + chr1_1:61834824-61834843 None:intergenic 45.0%
TGGAGTAAAGGCTACACTCT+TGG + chr1_1:61834825-61834844 None:intergenic 45.0%
GAGTGTAGCCTTTACTCCAA+TGG - chr1_1:61834826-61834845 Msa0033960:five_prime_UTR 45.0%
!!! TTTTTTTAATTATTTTAATG+AGG - chr1_1:61830053-61830072 Msa0033960:intron 5.0%
!! TTATATGATTAAAATAAAAA+AGG - chr1_1:61830627-61830646 Msa0033960:intron 5.0%
!!! TTTTCTAAAATAATTATAAA+AGG + chr1_1:61833353-61833372 None:intergenic 5.0%
TGGTCATGCCGATGATTGGA+AGG - chr1_1:61827840-61827859 Msa0033960:CDS 50.0%
TGGCGGAAAAATGACCGTGA+AGG - chr1_1:61827927-61827946 Msa0033960:intron 50.0%
GGGAAAAACGTGGTTAAGCG+GGG + chr1_1:61828303-61828322 None:intergenic 50.0%
CGAGTTCGAGACTTGTGGAT+GGG + chr1_1:61828323-61828342 None:intergenic 50.0%
TCGAGTTCGAGACTTGTGGA+TGG + chr1_1:61828324-61828343 None:intergenic 50.0%
GGACTCGGATCCCTAAAACA+AGG + chr1_1:61828349-61828368 None:intergenic 50.0%
TAGGGATCCGAGTCCAATAC+TGG - chr1_1:61828354-61828373 Msa0033960:intron 50.0%
AGGGATCCGAGTCCAATACT+GGG - chr1_1:61828355-61828374 Msa0033960:intron 50.0%
! TTGCGTCCTTCCTGTGGTTT+TGG - chr1_1:61828484-61828503 Msa0033960:intron 50.0%
TTACTGGGAGTCGGTAGCAA+CGG + chr1_1:61828519-61828538 None:intergenic 50.0%
ATTTGGGAGGGGAGAGCTTT+CGG + chr1_1:61829235-61829254 None:intergenic 50.0%
GGTATGAAGGGATTTGGGAG+GGG + chr1_1:61829246-61829265 None:intergenic 50.0%
CAACTTAGGGCCTGTTTGGA+TGG - chr1_1:61829364-61829383 Msa0033960:intron 50.0%
TTGTAAGATGGGTGGCTGTG+AGG - chr1_1:61830232-61830251 Msa0033960:intron 50.0%
!! GCAGGTCTTATTTGTGCACG+AGG + chr1_1:61830267-61830286 None:intergenic 50.0%
GTATCTGCAGTGTGGATTCC+AGG + chr1_1:61830540-61830559 None:intergenic 50.0%
CCATCCAAGTATCTGCAGTG+TGG + chr1_1:61830548-61830567 None:intergenic 50.0%
CCACACTGCAGATACTTGGA+TGG - chr1_1:61830545-61830564 Msa0033960:intron 50.0%
TGCAGATACTTGGATGGCAC+TGG - chr1_1:61830551-61830570 Msa0033960:intron 50.0%
!! CAGCAAGTGGAAGTATCAGC+AGG - chr1_1:61830669-61830688 Msa0033960:intron 50.0%
CTACCCCAACCTTCTCTCTA+AGG + chr1_1:61831128-61831147 None:intergenic 50.0%
!! AGATGGTGGAAACTCGGCTT+AGG - chr1_1:61831163-61831182 Msa0033960:intron 50.0%
GAAACTCGGCTTAGGTGGTT+TGG - chr1_1:61831171-61831190 Msa0033960:intron 50.0%
AGTGCACAGAACGACTGGAA+AGG - chr1_1:61832507-61832526 Msa0033960:intron 50.0%
!! AGAACGACTGGAAAGGTGCT+TGG - chr1_1:61832514-61832533 Msa0033960:intron 50.0%
TGCTGCTGACATGTTTCCTG+AGG + chr1_1:61833162-61833181 None:intergenic 50.0%
! CTCTAGGCCTTTGAGGACTA+TGG - chr1_1:61833896-61833915 Msa0033960:intron 50.0%
CATCTTGCTTGATCCGCCAA+TGG + chr1_1:61834573-61834592 None:intergenic 50.0%
GCAAGATGTCTGTCGGATTC+TGG - chr1_1:61834585-61834604 Msa0033960:CDS 50.0%
TGCCATGGCTTACCATCTAC+TGG + chr1_1:61834614-61834633 None:intergenic 50.0%
GTAGATGGTAAGCCATGGCA+CGG - chr1_1:61834614-61834633 Msa0033960:CDS 50.0%
GGTCCATGGAGCTGTGAAAC+CGG - chr1_1:61827766-61827785 Msa0033960:CDS 55.0%
GTCCATGGAGCTGTGAAACC+GGG - chr1_1:61827767-61827786 Msa0033960:CDS 55.0%
TGGTCGGGGAAACTCCTTAC+TGG - chr1_1:61828254-61828273 Msa0033960:intron 55.0%
GGTCGGGGAAACTCCTTACT+GGG - chr1_1:61828255-61828274 Msa0033960:intron 55.0%
AAGCGGGGAGACCTCATGAA+AGG + chr1_1:61828288-61828307 None:intergenic 55.0%
GGTCTCGAGTTCGAGACTTG+TGG + chr1_1:61828328-61828347 None:intergenic 55.0%
GAGATGTTGCGTCCTTCCTG+TGG - chr1_1:61828478-61828497 Msa0033960:intron 55.0%
TACTGGGAGTCGGTAGCAAC+GGG + chr1_1:61828518-61828537 None:intergenic 55.0%
TTTGGATGGTAGGGGACGAG+AGG - chr1_1:61828992-61829011 Msa0033960:intron 55.0%
TTGGATGGTAGGGGACGAGA+GGG - chr1_1:61828993-61829012 Msa0033960:intron 55.0%
! GTAGGGGACGAGAGGGTTTT+GGG - chr1_1:61829000-61829019 Msa0033960:intron 55.0%
!!! ACGAGAGGGTTTTGGGTGGA+GGG - chr1_1:61829007-61829026 Msa0033960:intron 55.0%
TTTGGGAGGGGAGAGCTTTC+GGG + chr1_1:61829234-61829253 None:intergenic 55.0%
GCTATTCCGGGACGGCTTTA+TGG - chr1_1:61830329-61830348 Msa0033960:intron 55.0%
! ATTCCGGGACGGCTTTATGG+CGG - chr1_1:61830332-61830351 Msa0033960:intron 55.0%
GAGATGGAAATGGCGGTGAC+AGG - chr1_1:61830372-61830391 Msa0033960:intron 55.0%
!! TTGGATGGCACTGGTCCTTC+AGG - chr1_1:61830560-61830579 Msa0033960:intron 55.0%
TGGTGGAAACTCGGCTTAGG+TGG - chr1_1:61831166-61831185 Msa0033960:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_1:61831373-61831392 Msa0033960:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_1:61831374-61831393 Msa0033960:intron 55.0%
!! ACGACTGGAAAGGTGCTTGG+TGG - chr1_1:61832517-61832536 Msa0033960:intron 55.0%
CATCTTCCACCCCAGCAAAG+TGG + chr1_1:61832927-61832946 None:intergenic 55.0%
CACACGAAGAGTCGGGTCCA+TGG - chr1_1:61827752-61827771 Msa0033960:CDS 60.0%
GACCCGGTTTCACAGCTCCA+TGG + chr1_1:61827772-61827791 None:intergenic 60.0%
GGGGAAACTCCTTACTGGGC+TGG - chr1_1:61828259-61828278 Msa0033960:intron 60.0%
GAAAGGTGGCCAGCCCAGTA+AGG + chr1_1:61828271-61828290 None:intergenic 60.0%
!! TGGGCTGGCCACCTTTCATG+AGG - chr1_1:61828274-61828293 Msa0033960:intron 60.0%
CGGGGAGACCTCATGAAAGG+TGG + chr1_1:61828285-61828304 None:intergenic 60.0%
! GGTAGGGGACGAGAGGGTTT+TGG - chr1_1:61828999-61829018 Msa0033960:intron 60.0%
!!! GACGAGAGGGTTTTGGGTGG+AGG - chr1_1:61829006-61829025 Msa0033960:intron 60.0%
!!! CGAGAGGGTTTTGGGTGGAG+GGG - chr1_1:61829008-61829027 Msa0033960:intron 60.0%
! TTCCGGGACGGCTTTATGGC+GGG - chr1_1:61830333-61830352 Msa0033960:intron 60.0%
TTCCCGCCATAAAGCCGTCC+CGG + chr1_1:61830338-61830357 None:intergenic 60.0%
!! GGCACTGGTCCTTCAGGTTC+TGG - chr1_1:61830566-61830585 Msa0033960:intron 60.0%
GGTAAGCCATGGCACGGTTC+CGG - chr1_1:61834620-61834639 Msa0033960:CDS 60.0%
TAGTGTCCGGAACCGTGCCA+TGG + chr1_1:61834629-61834648 None:intergenic 60.0%
!!! GGGGACGAGAGGGTTTTGGG+TGG - chr1_1:61829003-61829022 Msa0033960:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61827309 61835126 61827309 ID=Msa0033960;Name=Msa0033960
chr1_1 mRNA 61827309 61835126 61827309 ID=Msa0033960-mRNA-1;Parent=Msa0033960;Name=Msa0033960-mRNA-1;_AED=0.19;_eAED=0.19;_QI=382|0.83|1|1|1|1|7|267|342
chr1_1 exon 61827309 61827878 61827309 ID=Msa0033960-mRNA-1:exon:19384;Parent=Msa0033960-mRNA-1
chr1_1 exon 61828503 61828603 61828503 ID=Msa0033960-mRNA-1:exon:19383;Parent=Msa0033960-mRNA-1
chr1_1 exon 61831848 61831924 61831848 ID=Msa0033960-mRNA-1:exon:19382;Parent=Msa0033960-mRNA-1
chr1_1 exon 61832042 61832196 61832042 ID=Msa0033960-mRNA-1:exon:19381;Parent=Msa0033960-mRNA-1
chr1_1 exon 61833492 61833558 61833492 ID=Msa0033960-mRNA-1:exon:19380;Parent=Msa0033960-mRNA-1
chr1_1 exon 61834338 61834405 61834338 ID=Msa0033960-mRNA-1:exon:19379;Parent=Msa0033960-mRNA-1
chr1_1 exon 61834487 61835126 61834487 ID=Msa0033960-mRNA-1:exon:19378;Parent=Msa0033960-mRNA-1
chr1_1 five_prime_UTR 61834745 61835126 61834745 ID=Msa0033960-mRNA-1:five_prime_utr;Parent=Msa0033960-mRNA-1
chr1_1 CDS 61834487 61834744 61834487 ID=Msa0033960-mRNA-1:cds;Parent=Msa0033960-mRNA-1
chr1_1 CDS 61834338 61834405 61834338 ID=Msa0033960-mRNA-1:cds;Parent=Msa0033960-mRNA-1
chr1_1 CDS 61833492 61833558 61833492 ID=Msa0033960-mRNA-1:cds;Parent=Msa0033960-mRNA-1
chr1_1 CDS 61832042 61832196 61832042 ID=Msa0033960-mRNA-1:cds;Parent=Msa0033960-mRNA-1
chr1_1 CDS 61831848 61831924 61831848 ID=Msa0033960-mRNA-1:cds;Parent=Msa0033960-mRNA-1
chr1_1 CDS 61828503 61828603 61828503 ID=Msa0033960-mRNA-1:cds;Parent=Msa0033960-mRNA-1
chr1_1 CDS 61827576 61827878 61827576 ID=Msa0033960-mRNA-1:cds;Parent=Msa0033960-mRNA-1
chr1_1 three_prime_UTR 61827309 61827575 61827309 ID=Msa0033960-mRNA-1:three_prime_utr;Parent=Msa0033960-mRNA-1
Gene Sequence

>Msa0033960

ATGTTTCGTAACATAATAGTTTTAGTTTTGTTATTGTTAGTATCATCTTATGATGTTTATTCACACGAAGAGTCGGGTCCATGGAGCTGTGAAACCGGGTCAGAGATTCATGTTGAGTCCGAATTTCAACCCGGTGTTATTACACTTGATGGTCATGCCGATGATTGGAAGGACATTGATGGGTCCCACTTCTCTCTTCTTCTTGCTCTCGACCCTGATGCTGAAAATGAATTCAATGGCGGAAAAATGACCGTGAAGAGTGTGCATGATGGCCGTGATATTTTCTTTCTGCTTCAAGTTGATGGTGATTATGCCTACTCTAATGGTGAAAGCAAGAAATGTCCCTCTGTTGCACTTATGTTTCAAATTGGAGATGGTGCCTCTTATCATAATATGGGTGGCTGTGAGGAACATTCAACCTCGTGCACAAATAAGACCTGCAAAGGTCATGAAGTTGACATTATGCACTTTTCAATTGGAAATGCTATTCCGGGACGGCTTTATGGCGGGAATCCCATTGACAATAGAGATGGAAATGGCGGTGACAGGTTTGGCCATTTGGTTGATCTTTATGCCTGGAATCCACACTGCAGATACTTGGATGGCACTGGTCCTTCAGGTTCTGGTTTTGTAAAGGATGAGAACCCTTATGCAGAAAATGGAAAAAAGGGCACATATTTTTTTGAATTCTCTAGGCCTTTGAGGACTATGGATCATCTGCAACAGGATGTGCAATTCACCATTGGCGGATCAAGCAAGATGTCTGTCGGATTCTGGTATCCAGTAGATGGTAAGCCATGGCACGGTTCCGGACACTACTCTGTTAACTGTGATTGGGTTCCGATTGATATATCTCAGAGCAGTTCATTGAGTGGCAAGTCAGTGGACTCAGCATCAAGTAGCTCATGGAATTTTGCAAGCGCATTTTCGCTTATACTTTCAGTAGCAGCACTTTGTGTGTCTGTGTTTGTGAGTTATCGGGTTTTACATCCCAAGAGTGTAGCCTTTACTCCAATGGAGAACCTTTAA
Protein sequence

>Msa0033960

MFRNIIVLVLLLLVSSYDVYSHEESGPWSCETGSEIHVESEFQPGVITLDGHADDWKDIDGSHFSLLLALDPDAENEFNGGKMTVKSVHDGRDIFFLLQVDGDYAYSNGESKKCPSVALMFQIGDGASYHNMGGCEEHSTSCTNKTCKGHEVDIMHFSIGNAIPGRLYGGNPIDNRDGNGGDRFGHLVDLYAWNPHCRYLDGTGPSGSGFVKDENPYAENGKKGTYFFEFSRPLRTMDHLQQDVQFTIGGSSKMSVGFWYPVDGKPWHGSGHYSVNCDWVPIDISQSSSLSGKSVDSASSSSWNFASAFSLILSVAALCVSVFVSYRVLHPKSVAFTPMENL*