Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034020 | XP_003591383.1 | 91.781 | 365 | 7 | 1 | 1 | 342 | 1 | 365 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033960 | Msa0034020 | 0.906864 | 9.398351e-81 | -8.615850e-47 |
| Msa0034020 | Msa1400210 | 0.952021 | 5.925337e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034020 | MtrunA17_Chr1g0194501 | 91.781 | 365 | 7 | 1 | 1 | 342 | 1 | 365 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034020 | AT3G62370.1 | 62.953 | 359 | 110 | 3 | 4 | 341 | 3 | 359 | 1.18e-171 | 481 |
Find 116 sgRNAs with CRISPR-Local
Find 525 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATTCCGGGACGGCTTTA+TGG | 0.170463 | 1_1:+61921822 | Msa0034020:CDS |
| CTGTTTGATACACTATTTAA+AGG | 0.204813 | 1_1:-61926335 | None:intergenic |
| CGAGTTTATATAAGTGGATT+TGG | 0.212359 | 1_1:-61919086 | None:intergenic |
| CTCTAGGCCTTTGAGGACTA+TGG | 0.252101 | 1_1:+61925391 | Msa0034020:CDS |
| TTCTTTCTGCTTCAAGTTGA+TGG | 0.258059 | 1_1:+61919547 | Msa0034020:CDS |
| GTTGCACTTATGTTTCAAAT+TGG | 0.278592 | 1_1:+61920392 | Msa0034020:CDS |
| GGCACTGGTCCTTCAGGTTC+TGG | 0.288724 | 1_1:+61922059 | Msa0034020:CDS |
| TTCAATTGGAAATGCTATTC+CGG | 0.289510 | 1_1:+61921809 | Msa0034020:CDS |
| GAGAACCCTTATGCAGAAAA+TGG | 0.296262 | 1_1:+61925341 | Msa0034020:CDS |
| TTGGATGGCACTGGTCCTTC+AGG | 0.301058 | 1_1:+61922053 | Msa0034020:CDS |
| TTCATACAGGTTTGGCCATT+TGG | 0.305048 | 1_1:+61921995 | Msa0034020:intron |
| GTTCAATAGTCCAAGTATAA+TGG | 0.308197 | 1_1:+61926503 | Msa0034020:three_prime_UTR |
| TGTATCAAACAGCTTGAGTT+TGG | 0.320319 | 1_1:+61926346 | Msa0034020:three_prime_UTR |
| AAGTGTAAAGAGAATGTAAA+AGG | 0.325253 | 1_1:+61918887 | Msa0034020:five_prime_UTR |
| CCCGGTGTTATTACACTTGA+TGG | 0.331253 | 1_1:+61919313 | Msa0034020:CDS |
| GTCAACTTCATGACCTTTGC+AGG | 0.335113 | 1_1:-61921775 | None:intergenic |
| CATTTACGATTGTACTATAT+AGG | 0.336446 | 1_1:+61926381 | Msa0034020:three_prime_UTR |
| GGTGATTATGCCTACTCTAA+TGG | 0.343433 | 1_1:+61919568 | Msa0034020:CDS |
| TGTCTGTGTTTGTGAGTTAT+CGG | 0.344354 | 1_1:+61926271 | Msa0034020:CDS |
| GCAAGATGTCTGTCGGATTC+TGG | 0.349571 | 1_1:+61926067 | Msa0034020:CDS |
| ACTACTCTGTTAACTGTGAT+TGG | 0.350378 | 1_1:+61926127 | Msa0034020:CDS |
| TCAATTGGAAATGCTATTCC+GGG | 0.355065 | 1_1:+61921810 | Msa0034020:CDS |
| GTATCTGCAGTGTGGATTCC+AGG | 0.373410 | 1_1:-61922030 | None:intergenic |
| GGTAAGCCATGGCACGGTTC+CGG | 0.376073 | 1_1:+61926102 | Msa0034020:CDS |
| GGTCCATGGAGCTGTGAAAC+CGG | 0.385078 | 1_1:+61919259 | Msa0034020:CDS |
| ATTTCCATCTCTATTGTCAA+TGG | 0.406014 | 1_1:-61921853 | None:intergenic |
| TTGAATTCTCTAGGCCTTTG+AGG | 0.408768 | 1_1:+61925384 | Msa0034020:CDS |
| AAGGTTCTCCATTGGAGTAA+AGG | 0.412113 | 1_1:-61926316 | None:intergenic |
| TTGTGTCTTGTTGCTAACTA+AGG | 0.417284 | 1_1:-61918864 | None:intergenic |
| AATAACACCGGGTTGAAATT+CGG | 0.421139 | 1_1:-61919302 | None:intergenic |
| GTATCAAACAGCTTGAGTTT+GGG | 0.423240 | 1_1:+61926347 | Msa0034020:three_prime_UTR |
| AACGTGCAATTTCCTTTCAC+AGG | 0.428801 | 1_1:+61926552 | Msa0034020:three_prime_UTR |
| TGGAGTAAAGGCTACACTCT+TGG | 0.432096 | 1_1:-61926304 | None:intergenic |
| GGAGTAAAGGCTACACTCTT+GGG | 0.441900 | 1_1:-61926303 | None:intergenic |
| GTGATTATGCCTACTCTAAT+GGG | 0.442592 | 1_1:+61919569 | Msa0034020:CDS |
| GCAACTTACATTATGATAAG+AGG | 0.443186 | 1_1:-61920423 | None:intergenic |
| GAATCCACACTGCAGATACT+TGG | 0.443373 | 1_1:+61922034 | Msa0034020:CDS |
| GACTATGGATCATCTGCAAC+AGG | 0.447825 | 1_1:+61925406 | Msa0034020:CDS |
| TTGATGGTCATGCCGATGAT+TGG | 0.452530 | 1_1:+61919329 | Msa0034020:CDS |
| ATTTGGTTGATCTTTATGCC+TGG | 0.456544 | 1_1:+61922012 | Msa0034020:CDS |
| CTACTCTGTTAACTGTGATT+GGG | 0.458444 | 1_1:+61926128 | Msa0034020:CDS |
| TGCCATGGCTTACCATCTAC+TGG | 0.461844 | 1_1:-61926093 | None:intergenic |
| TTTCCATCTCTATTGTCAAT+GGG | 0.463067 | 1_1:-61921852 | None:intergenic |
| TTCCGGGACGGCTTTATGGC+GGG | 0.467885 | 1_1:+61921826 | Msa0034020:CDS |
| GGATTCTGGTATCCAGTAGA+TGG | 0.471064 | 1_1:+61926081 | Msa0034020:CDS |
| GTCTGTGTTTGTGAGTTATC+GGG | 0.479240 | 1_1:+61926272 | Msa0034020:CDS |
| ACTATTTAAAGGTTCTCCAT+TGG | 0.483409 | 1_1:-61926324 | None:intergenic |
| GTGGCAAGGTAGATCACAAA+TGG | 0.484756 | 1_1:+61918818 | Msa0034020:five_prime_UTR |
| GTTTATTCACACGAAGAGTC+GGG | 0.494402 | 1_1:+61919238 | Msa0034020:CDS |
| ATTTGATAGATCGCGATTTG+TGG | 0.495040 | 1_1:-61919057 | None:intergenic |
| AGATGGAACTCCATTATACT+TGG | 0.495141 | 1_1:-61926513 | None:intergenic |
| AAGGAAAATGCAACAAGTGC+TGG | 0.498184 | 1_1:+61918906 | Msa0034020:five_prime_UTR |
| GAGATGGAAATGGCGGTGAC+AGG | 0.505100 | 1_1:+61921865 | Msa0034020:CDS |
| ATTGACAATAGAGATGGAAA+TGG | 0.512303 | 1_1:+61921855 | Msa0034020:CDS |
| GAGTGTAGCCTTTACTCCAA+TGG | 0.521817 | 1_1:+61926308 | Msa0034020:CDS |
| CTGCTCTGAGATATATCAAT+CGG | 0.523134 | 1_1:-61926153 | None:intergenic |
| CACACGAAGAGTCGGGTCCA+TGG | 0.523429 | 1_1:+61919245 | Msa0034020:CDS |
| TTTGTTGATTGAACTTGAAG+TGG | 0.523706 | 1_1:+61918987 | Msa0034020:five_prime_UTR |
| TGTTTATTCACACGAAGAGT+CGG | 0.527511 | 1_1:+61919237 | Msa0034020:CDS |
| CAGGATGTGCAATTCACCAT+TGG | 0.528409 | 1_1:+61926036 | Msa0034020:intron |
| ATCAATGTCCTTCCAATCAT+CGG | 0.529350 | 1_1:-61919341 | None:intergenic |
| GTCCATGGAGCTGTGAAACC+GGG | 0.530304 | 1_1:+61919260 | Msa0034020:CDS |
| AGCAAGAAGAAGAGAGAAGT+GGG | 0.530565 | 1_1:-61919368 | None:intergenic |
| GATGATTGGAAGGACATTGA+TGG | 0.532585 | 1_1:+61919343 | Msa0034020:CDS |
| GACCCGGTTTCACAGCTCCA+TGG | 0.533933 | 1_1:-61919262 | None:intergenic |
| AGGCATAAAGATCAACCAAA+TGG | 0.542098 | 1_1:-61922010 | None:intergenic |
| GTTGATTGAACTTGAAGTGG+TGG | 0.542845 | 1_1:+61918990 | Msa0034020:five_prime_UTR |
| TTCCCGCCATAAAGCCGTCC+CGG | 0.550538 | 1_1:-61921828 | None:intergenic |
| TTGAAACATAAGTGCAACAG+AGG | 0.557620 | 1_1:-61920387 | None:intergenic |
| ACTCAGCATCAAGTAGCTCA+TGG | 0.557960 | 1_1:+61926199 | Msa0034020:CDS |
| GATGCTGAAAATGAATTCAA+TGG | 0.562672 | 1_1:+61919400 | Msa0034020:CDS |
| ACGTGCAATTTCCTTTCACA+GGG | 0.564244 | 1_1:+61926553 | Msa0034020:three_prime_UTR |
| TGCAGATACTTGGATGGCAC+TGG | 0.565255 | 1_1:+61922044 | Msa0034020:CDS |
| ATTCCGGGACGGCTTTATGG+CGG | 0.565691 | 1_1:+61921825 | Msa0034020:CDS |
| ATGATTGGAAGGACATTGAT+GGG | 0.569537 | 1_1:+61919344 | Msa0034020:CDS |
| CTTAATTGTTGTAAGATGGG+TGG | 0.570771 | 1_1:+61921717 | Msa0034020:intron |
| CTCAACATGAATCTCTGACC+CGG | 0.580275 | 1_1:-61919278 | None:intergenic |
| GATGTGCAATTCACCATTGG+CGG | 0.581517 | 1_1:+61926039 | Msa0034020:CDS |
| TGCACAAATAAGACCTGCAA+AGG | 0.582257 | 1_1:+61921762 | Msa0034020:CDS |
| CAAAGAAAGAAATACCTTCA+CGG | 0.582329 | 1_1:-61919434 | None:intergenic |
| CTTATGTTTCAAATTGGAGA+TGG | 0.582716 | 1_1:+61920398 | Msa0034020:CDS |
| CCACACTGCAGATACTTGGA+TGG | 0.585406 | 1_1:+61922038 | Msa0034020:CDS |
| TTCATTGAGTGGCAAGTCAG+TGG | 0.585865 | 1_1:+61926176 | Msa0034020:CDS |
| TGCAACAACTAAGCACAAGA+TGG | 0.588619 | 1_1:-61926530 | None:intergenic |
| AATCCCATTGACAATAGAGA+TGG | 0.588744 | 1_1:+61921849 | Msa0034020:CDS |
| GAGCAAGAAGAAGAGAGAAG+TGG | 0.590725 | 1_1:-61919369 | None:intergenic |
| CATCTTGCTTGATCCGCCAA+TGG | 0.594402 | 1_1:-61926052 | None:intergenic |
| CCATCAAGTGTAATAACACC+GGG | 0.594542 | 1_1:-61919313 | None:intergenic |
| ACCATCAAGTGTAATAACAC+CGG | 0.597071 | 1_1:-61919314 | None:intergenic |
| TTGTTGCAGAGTGTGCATGA+TGG | 0.598722 | 1_1:+61919514 | Msa0034020:intron |
| ACAGTTAACAGAGTAGTGTC+CGG | 0.602771 | 1_1:-61926121 | None:intergenic |
| GCAGGTCTTATTTGTGCACG+AGG | 0.611952 | 1_1:-61921757 | None:intergenic |
| GGATCAAGCAAGATGTCTGT+CGG | 0.616205 | 1_1:+61926060 | Msa0034020:CDS |
| TTGGAAATGCTATTCCGGGA+CGG | 0.622396 | 1_1:+61921814 | Msa0034020:CDS |
| GTGCAATTTCCTTTCACAGG+GGG | 0.623334 | 1_1:+61926555 | Msa0034020:three_prime_UTR |
| TAGTGTCCGGAACCGTGCCA+TGG | 0.623740 | 1_1:-61926108 | None:intergenic |
| TGGTCATGCCGATGATTGGA+AGG | 0.627013 | 1_1:+61919333 | Msa0034020:CDS |
| GATGATTATGATGCATGAAG+TGG | 0.632238 | 1_1:+61918799 | None:intergenic |
| ATCCAGTAGATGGTAAGCCA+TGG | 0.634636 | 1_1:+61926091 | Msa0034020:CDS |
| GTTGAGTCCGAATTTCAACC+CGG | 0.640532 | 1_1:+61919295 | Msa0034020:CDS |
| TAGATCACAAATGGAATACG+TGG | 0.642073 | 1_1:+61918827 | Msa0034020:five_prime_UTR |
| AGATGATCCATAGTCCTCAA+AGG | 0.643096 | 1_1:-61925398 | None:intergenic |
| GACAATAGAGATGGAAATGG+CGG | 0.643121 | 1_1:+61921858 | Msa0034020:CDS |
| TCTCAGAGCAGTTCATTGAG+TGG | 0.649577 | 1_1:+61926165 | Msa0034020:CDS |
| GAAGCAGAAAGAAAATATCA+CGG | 0.656787 | 1_1:-61919537 | None:intergenic |
| GTAGATGGTAAGCCATGGCA+CGG | 0.658775 | 1_1:+61926096 | Msa0034020:CDS |
| CACATCTTACCCATTAGAGT+AGG | 0.661936 | 1_1:-61919578 | None:intergenic |
| AGATCACAAATGGAATACGT+GGG | 0.665653 | 1_1:+61918828 | Msa0034020:five_prime_UTR |
| TGAAACATAAGTGCAACAGA+GGG | 0.672670 | 1_1:-61920386 | None:intergenic |
| TTGTGCATACCAGAACCTGA+AGG | 0.682415 | 1_1:-61922068 | None:intergenic |
| CCATCCAAGTATCTGCAGTG+TGG | 0.694075 | 1_1:-61922038 | None:intergenic |
| GATCACAAATGGAATACGTG+GGG | 0.698603 | 1_1:+61918829 | Msa0034020:five_prime_UTR |
| TTGTAAGATGGGTGGCTGTG+AGG | 0.702871 | 1_1:+61921725 | Msa0034020:intron |
| TTATGATGCATGAAGTGGCA+AGG | 0.708279 | 1_1:+61918804 | Msa0034020:five_prime_UTR |
| GCTGAAAATGAATTCAATGG+CGG | 0.714687 | 1_1:+61919403 | Msa0034020:CDS |
| CGTGCAATTTCCTTTCACAG+GGG | 0.744932 | 1_1:+61926554 | Msa0034020:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATTCTTTTAATG+AGG | - | chr1_1:61921418-61921437 | None:intergenic | 10.0% |
| !! | AAAATAAATTAAAATCAGTT+AGG | + | chr1_1:61921434-61921453 | Msa0034020:intron | 10.0% |
| !! | AAATAAATTAAAATCAGTTA+GGG | + | chr1_1:61921435-61921454 | Msa0034020:intron | 10.0% |
| !!! | ACATAACATTTTTTTTTTTA+TGG | + | chr1_1:61924460-61924479 | Msa0034020:intron | 10.0% |
| !!! | TTTTATGTTAAAGTATATTA+TGG | + | chr1_1:61925151-61925170 | Msa0034020:intron | 10.0% |
| !! | TCAAATAGAATTAAAAAATA+GGG | - | chr1_1:61926440-61926459 | None:intergenic | 10.0% |
| !! | TTCAAATAGAATTAAAAAAT+AGG | - | chr1_1:61926441-61926460 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTTTTTAAAAAAC+TGG | + | chr1_1:61926580-61926599 | Msa0034020:three_prime_UTR | 10.0% |
| !!! | TTTAAGTTGTTTGATTTTTT+CGG | + | chr1_1:61919677-61919696 | Msa0034020:intron | 15.0% |
| !! | AAAATGTTGAATATATAAAG+AGG | + | chr1_1:61919913-61919932 | Msa0034020:intron | 15.0% |
| !!! | AAGTAATGATATTTTTATTG+AGG | + | chr1_1:61920229-61920248 | Msa0034020:intron | 15.0% |
| !!! | AGTAATGATATTTTTATTGA+GGG | + | chr1_1:61920230-61920249 | Msa0034020:intron | 15.0% |
| !! | ATTATTAAAACAACATAGAT+TGG | + | chr1_1:61920597-61920616 | Msa0034020:intron | 15.0% |
| !!! | TTTGACTTTATTTAATCTTT+TGG | + | chr1_1:61921037-61921056 | Msa0034020:intron | 15.0% |
| !!! | ATTTTTGTATAATCTGTTTT+AGG | + | chr1_1:61921169-61921188 | Msa0034020:intron | 15.0% |
| !!! | AAATAAGTTGAAACAATTTA+TGG | + | chr1_1:61921259-61921278 | Msa0034020:intron | 15.0% |
| !! | AATAAATTAAAATCAGTTAG+GGG | + | chr1_1:61921436-61921455 | Msa0034020:intron | 15.0% |
| !!! | AAAATGTATAAAACATTTTC+AGG | - | chr1_1:61922440-61922459 | None:intergenic | 15.0% |
| !!! | TGTTGTCTAATTTTTATTTT+AGG | + | chr1_1:61923929-61923948 | Msa0034020:intron | 15.0% |
| !!! | GTTGTCTAATTTTTATTTTA+GGG | + | chr1_1:61923930-61923949 | Msa0034020:intron | 15.0% |
| !! | AAAACATATTGTACATATAT+TGG | - | chr1_1:61924370-61924389 | None:intergenic | 15.0% |
| !!! | CAATTTTAATATCATATATG+GGG | - | chr1_1:61925196-61925215 | None:intergenic | 15.0% |
| !!! | CCAATTTTAATATCATATAT+GGG | - | chr1_1:61925197-61925216 | None:intergenic | 15.0% |
| !! | TTATTAATCATAATGAATTC+TGG | + | chr1_1:61925591-61925610 | Msa0034020:intron | 15.0% |
| !!! | ATTTTGTATTTCTGATATTA+TGG | + | chr1_1:61925653-61925672 | Msa0034020:intron | 15.0% |
| !! | TAAAAACGAGTTTATATAAG+TGG | - | chr1_1:61919095-61919114 | None:intergenic | 20.0% |
| !!! | TATTTAGTGGCTTAAAATTT+TGG | + | chr1_1:61919945-61919964 | Msa0034020:intron | 20.0% |
| !!! | ATTTAGTGGCTTAAAATTTT+GGG | + | chr1_1:61919946-61919965 | Msa0034020:intron | 20.0% |
| !!! | ATGATACTCTTTTAATAAGT+TGG | + | chr1_1:61920319-61920338 | Msa0034020:intron | 20.0% |
| !!! | TTCATGTTTTTCAAATCTAA+GGG | + | chr1_1:61920821-61920840 | Msa0034020:intron | 20.0% |
| !! | AGAATTTCTCTAACTTATTT+AGG | - | chr1_1:61921339-61921358 | None:intergenic | 20.0% |
| !! | AATAAGTTAGAGAAATTCTT+AGG | + | chr1_1:61921340-61921359 | Msa0034020:intron | 20.0% |
| !!! | TAATTATTTTAATGAGGTGT+TGG | + | chr1_1:61921552-61921571 | Msa0034020:intron | 20.0% |
| !!! | AATTATTTTAATGAGGTGTT+GGG | + | chr1_1:61921553-61921572 | Msa0034020:intron | 20.0% |
| !! | AAAGTTCTTTAGACTTAAAA+AGG | - | chr1_1:61922256-61922275 | None:intergenic | 20.0% |
| !!! | ATAACTATGCCTTTTATTTA+AGG | + | chr1_1:61922367-61922386 | Msa0034020:intron | 20.0% |
| !!! | TAACTATGCCTTTTATTTAA+GGG | + | chr1_1:61922368-61922387 | Msa0034020:intron | 20.0% |
| !! | ATAGAAAAGCAAAATGATAA+TGG | - | chr1_1:61922463-61922482 | None:intergenic | 20.0% |
| !!! | ATTTCTCTTATAGTTTTTCT+AGG | - | chr1_1:61922775-61922794 | None:intergenic | 20.0% |
| !!! | ATATGTCATTGTTTCTTATA+TGG | - | chr1_1:61922936-61922955 | None:intergenic | 20.0% |
| !! | AGGAAAAGATGAATTAATTA+AGG | + | chr1_1:61923227-61923246 | Msa0034020:intron | 20.0% |
| !! | TGTAAATTCATTATTCACAT+AGG | - | chr1_1:61923635-61923654 | None:intergenic | 20.0% |
| !!! | GATTTTGTGCATATAATTAT+TGG | + | chr1_1:61923661-61923680 | Msa0034020:intron | 20.0% |
| !!! | ATATGAAAGTATGAAACAAT+GGG | - | chr1_1:61923736-61923755 | None:intergenic | 20.0% |
| !! | AGCTTATATATCCAATTATA+TGG | - | chr1_1:61923837-61923856 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTGAACAGTAAA+AGG | - | chr1_1:61924066-61924085 | None:intergenic | 20.0% |
| !!! | CTGATTTTAGAATGAAATAT+TGG | + | chr1_1:61924143-61924162 | Msa0034020:intron | 20.0% |
| !!! | TTTTAGAATGAAATATTGGT+TGG | + | chr1_1:61924147-61924166 | Msa0034020:intron | 20.0% |
| !! | ATTGTTTACCTAATTCTATA+TGG | - | chr1_1:61924203-61924222 | None:intergenic | 20.0% |
| !! | GTATGAATATCATTAAGAAT+CGG | - | chr1_1:61924264-61924283 | None:intergenic | 20.0% |
| !! | TATGTTGAAAGATATTTCTT+TGG | - | chr1_1:61924286-61924305 | None:intergenic | 20.0% |
| !!! | TATATGTACAATATGTTTTC+TGG | + | chr1_1:61924371-61924390 | Msa0034020:intron | 20.0% |
| !! | ATTATAAAAGGAAATTCTTG+TGG | - | chr1_1:61924835-61924854 | None:intergenic | 20.0% |
| !! | CCCATATATGATATTAAAAT+TGG | + | chr1_1:61925194-61925213 | Msa0034020:intron | 20.0% |
| !!! | GCCAATTTTAATATCATATA+TGG | - | chr1_1:61925198-61925217 | None:intergenic | 20.0% |
| !!! | CATATTTTTTTGAATTCTCT+AGG | + | chr1_1:61925375-61925394 | Msa0034020:CDS | 20.0% |
| !! | AACTCAGTTAATTCAAAATA+GGG | - | chr1_1:61925516-61925535 | None:intergenic | 20.0% |
| !! | ATTATATTTGAGAGAACTTA+TGG | - | chr1_1:61925875-61925894 | None:intergenic | 20.0% |
| ! | AAGTGTAAAGAGAATGTAAA+AGG | + | chr1_1:61918887-61918906 | Msa0034020:five_prime_UTR | 25.0% |
| ! | ACTTGAATGTGAATAACAAA+AGG | - | chr1_1:61919461-61919480 | None:intergenic | 25.0% |
| !!! | TTTTTCGGTAATCATGTTAT+CGG | + | chr1_1:61919692-61919711 | Msa0034020:intron | 25.0% |
| !! | TTTTAAGCCACTAAATATAC+CGG | - | chr1_1:61919942-61919961 | None:intergenic | 25.0% |
| ! | TCTCAATGATTGATATTGTT+TGG | + | chr1_1:61920051-61920070 | Msa0034020:intron | 25.0% |
| ! | TATTCATAACAAATCATGAG+TGG | + | chr1_1:61920075-61920094 | Msa0034020:intron | 25.0% |
| !! | ATATCAACTCTTGATTTTAG+CGG | + | chr1_1:61920103-61920122 | Msa0034020:intron | 25.0% |
| ! | TACTTGGATCAATATAATAG+TGG | + | chr1_1:61920145-61920164 | Msa0034020:intron | 25.0% |
| !! | TACAAAAACACTCTCTAAAA+AGG | - | chr1_1:61920554-61920573 | None:intergenic | 25.0% |
| !!! | ATGAAGTTTTTTGGGAATTT+AGG | - | chr1_1:61920798-61920817 | None:intergenic | 25.0% |
| !!! | CTTCATGTTTTTCAAATCTA+AGG | + | chr1_1:61920820-61920839 | Msa0034020:intron | 25.0% |
| !!! | TCATGTTTTTCAAATCTAAG+GGG | + | chr1_1:61920822-61920841 | Msa0034020:intron | 25.0% |
| !!! | TGTTTTTTTATGCTATCATG+AGG | + | chr1_1:61921227-61921246 | Msa0034020:intron | 25.0% |
| !!! | AATTCTTTTAATGAGGTGTT+GGG | - | chr1_1:61921411-61921430 | None:intergenic | 25.0% |
| !! | TAATTCTTTTAATGAGGTGT+TGG | - | chr1_1:61921412-61921431 | None:intergenic | 25.0% |
| ! | TTGTCTTAATTGTTGTAAGA+TGG | + | chr1_1:61921713-61921732 | Msa0034020:intron | 25.0% |
| ! | TGTCTTAATTGTTGTAAGAT+GGG | + | chr1_1:61921714-61921733 | Msa0034020:intron | 25.0% |
| ! | ACAATTTATGATGACTATAG+TGG | + | chr1_1:61921929-61921948 | Msa0034020:intron | 25.0% |
| ! | ACAAATGTAACATCTTTAGT+TGG | + | chr1_1:61922087-61922106 | Msa0034020:intron | 25.0% |
| !! | AATAAAAGGCATAGTTATCA+AGG | - | chr1_1:61922365-61922384 | None:intergenic | 25.0% |
| ! | AAAGTAAAACAGAAAATACG+AGG | - | chr1_1:61922507-61922526 | None:intergenic | 25.0% |
| ! | TGATATCTTTCATTAGAGAT+AGG | + | chr1_1:61922542-61922561 | Msa0034020:intron | 25.0% |
| ! | TAATTAGTTGGATAGAGATA+TGG | + | chr1_1:61922816-61922835 | Msa0034020:intron | 25.0% |
| !! | AAATTTTAAATTGGGTGTGT+GGG | - | chr1_1:61923117-61923136 | None:intergenic | 25.0% |
| !! | AGTGGCACAAATTTTAAATT+GGG | - | chr1_1:61923125-61923144 | None:intergenic | 25.0% |
| !! | AAGTGGCACAAATTTTAAAT+TGG | - | chr1_1:61923126-61923145 | None:intergenic | 25.0% |
| ! | TTATCATCTTTATCCAAGTT+AGG | - | chr1_1:61923331-61923350 | None:intergenic | 25.0% |
| !! | AATTCCTTTATTTGTCTCAA+TGG | + | chr1_1:61923464-61923483 | Msa0034020:intron | 25.0% |
| !! | ATTCCTTTATTTGTCTCAAT+GGG | + | chr1_1:61923465-61923484 | Msa0034020:intron | 25.0% |
| !! | GTTTTGCAAAGATATAGAAA+AGG | - | chr1_1:61923580-61923599 | None:intergenic | 25.0% |
| ! | GCTGTTAATGTTTATGAATT+GGG | + | chr1_1:61923696-61923715 | Msa0034020:intron | 25.0% |
| !! | CATATGAAAGTATGAAACAA+TGG | - | chr1_1:61923737-61923756 | None:intergenic | 25.0% |
| ! | TACTTTCATATGATTTGAAG+TGG | + | chr1_1:61923745-61923764 | Msa0034020:intron | 25.0% |
| !! | ACTTTCATATGATTTGAAGT+GGG | + | chr1_1:61923746-61923765 | Msa0034020:intron | 25.0% |
| ! | GGAAATTATCAACAAATGAA+GGG | - | chr1_1:61923904-61923923 | None:intergenic | 25.0% |
| ! | AGGAAATTATCAACAAATGA+AGG | - | chr1_1:61923905-61923924 | None:intergenic | 25.0% |
| !!! | TCATTTGTTGATAATTTCCT+AGG | + | chr1_1:61923905-61923924 | Msa0034020:intron | 25.0% |
| ! | TAAAAATTAGACAACAACCT+AGG | - | chr1_1:61923925-61923944 | None:intergenic | 25.0% |
| ! | AAGATAGTTAAAATCAGCTT+CGG | - | chr1_1:61924117-61924136 | None:intergenic | 25.0% |
| !!! | TTTCATTCTAAAATCAGCTT+CGG | - | chr1_1:61924140-61924159 | None:intergenic | 25.0% |
| ! | TTTACCTAATTCTATATGGA+GGG | - | chr1_1:61924199-61924218 | None:intergenic | 25.0% |
| !!! | AAGTGGTATTTTTAAAACGT+TGG | - | chr1_1:61924403-61924422 | None:intergenic | 25.0% |
| !!! | TTTTAAAAATACCACTTTGC+TGG | + | chr1_1:61924406-61924425 | Msa0034020:intron | 25.0% |
| ! | TTTAAAAATACCACTTTGCT+GGG | + | chr1_1:61924407-61924426 | Msa0034020:intron | 25.0% |
| ! | TATGCTTAACATTCAATTCA+TGG | - | chr1_1:61924596-61924615 | None:intergenic | 25.0% |
| ! | TATAAATTATTGAAAGCAGC+AGG | - | chr1_1:61924699-61924718 | None:intergenic | 25.0% |
| !! | TTTATGGATCACTAAACTTT+TGG | - | chr1_1:61924774-61924793 | None:intergenic | 25.0% |
| ! | TCCAGAATAACTAAATGATA+GGG | - | chr1_1:61925264-61925283 | None:intergenic | 25.0% |
| ! | ATCCAGAATAACTAAATGAT+AGG | - | chr1_1:61925265-61925284 | None:intergenic | 25.0% |
| !! | TTTTTCCATTTTCTGCATAA+GGG | - | chr1_1:61925349-61925368 | None:intergenic | 25.0% |
| !!! | TTTTTTCCATTTTCTGCATA+AGG | - | chr1_1:61925350-61925369 | None:intergenic | 25.0% |
| ! | TTATGCAGAAAATGGAAAAA+AGG | + | chr1_1:61925349-61925368 | Msa0034020:CDS | 25.0% |
| ! | TATGCAGAAAATGGAAAAAA+GGG | + | chr1_1:61925350-61925369 | Msa0034020:CDS | 25.0% |
| ! | GAACTCAGTTAATTCAAAAT+AGG | - | chr1_1:61925517-61925536 | None:intergenic | 25.0% |
| !! | TTTTGAATTAACTGAGTTCT+TGG | + | chr1_1:61925518-61925537 | Msa0034020:intron | 25.0% |
| !!! | CGGAGAAATATTTTTTATGA+AGG | - | chr1_1:61925769-61925788 | None:intergenic | 25.0% |
| ! | CTGTTTGATACACTATTTAA+AGG | - | chr1_1:61926338-61926357 | None:intergenic | 25.0% |
| ! | CATTTACGATTGTACTATAT+AGG | + | chr1_1:61926381-61926400 | Msa0034020:three_prime_UTR | 25.0% |
| ! | TTTGTTGATTGAACTTGAAG+TGG | + | chr1_1:61918987-61919006 | Msa0034020:five_prime_UTR | 30.0% |
| ! | CGAGTTTATATAAGTGGATT+TGG | - | chr1_1:61919089-61919108 | None:intergenic | 30.0% |
| ! | TGAATTCATTTTCAGCATCA+GGG | - | chr1_1:61919399-61919418 | None:intergenic | 30.0% |
| ! | TTGAATTCATTTTCAGCATC+AGG | - | chr1_1:61919400-61919419 | None:intergenic | 30.0% |
| GATGCTGAAAATGAATTCAA+TGG | + | chr1_1:61919400-61919419 | Msa0034020:CDS | 30.0% | |
| CAAAGAAAGAAATACCTTCA+CGG | - | chr1_1:61919437-61919456 | None:intergenic | 30.0% | |
| GAAGCAGAAAGAAAATATCA+CGG | - | chr1_1:61919540-61919559 | None:intergenic | 30.0% | |
| AGCTCAATAAATCAAACTCA+TGG | - | chr1_1:61919639-61919658 | None:intergenic | 30.0% | |
| ! | ACCTATTTGATGACTAATCT+TGG | + | chr1_1:61919727-61919746 | Msa0034020:intron | 30.0% |
| ! | ACCAAGATTAGTCATCAAAT+AGG | - | chr1_1:61919731-61919750 | None:intergenic | 30.0% |
| ! | ATTTGATGACTAATCTTGGT+CGG | + | chr1_1:61919731-61919750 | Msa0034020:intron | 30.0% |
| TGAATATATAAAGAGGTGAC+CGG | + | chr1_1:61919920-61919939 | Msa0034020:intron | 30.0% | |
| TATCAACAACGGATATTACT+GGG | - | chr1_1:61920027-61920046 | None:intergenic | 30.0% | |
| TTATCAACAACGGATATTAC+TGG | - | chr1_1:61920028-61920047 | None:intergenic | 30.0% | |
| !! | CAATTTTGTTTCGTTCTACT+TGG | + | chr1_1:61920129-61920148 | Msa0034020:intron | 30.0% |
| GTTGCACTTATGTTTCAAAT+TGG | + | chr1_1:61920392-61920411 | Msa0034020:CDS | 30.0% | |
| CTTATGTTTCAAATTGGAGA+TGG | + | chr1_1:61920398-61920417 | Msa0034020:CDS | 30.0% | |
| GCAACTTACATTATGATAAG+AGG | - | chr1_1:61920426-61920445 | None:intergenic | 30.0% | |
| ACTCAACAATGTATTCTTTG+AGG | + | chr1_1:61920449-61920468 | Msa0034020:intron | 30.0% | |
| CTCAACAATGTATTCTTTGA+GGG | + | chr1_1:61920450-61920469 | Msa0034020:intron | 30.0% | |
| !!! | AAGGAGGATATTTTAGGTTT+TGG | - | chr1_1:61920647-61920666 | None:intergenic | 30.0% |
| ! | GTATTGAAGGAGGATATTTT+AGG | - | chr1_1:61920653-61920672 | None:intergenic | 30.0% |
| AACTCAAAATGTATTGAAGG+AGG | - | chr1_1:61920663-61920682 | None:intergenic | 30.0% | |
| !!! | ATTTTGAGTTCCCTCAAATT+AGG | + | chr1_1:61920673-61920692 | Msa0034020:intron | 30.0% |
| !!! | TTTTGAGTTCCCTCAAATTA+GGG | + | chr1_1:61920674-61920693 | Msa0034020:intron | 30.0% |
| !!! | AGTTTTTTGGGAATTTAGGA+GGG | - | chr1_1:61920794-61920813 | None:intergenic | 30.0% |
| !!! | AAGTTTTTTGGGAATTTAGG+AGG | - | chr1_1:61920795-61920814 | None:intergenic | 30.0% |
| !!! | ATGAAGCGATGAAGTTTTTT+GGG | - | chr1_1:61920806-61920825 | None:intergenic | 30.0% |
| GCATTTGGATAAACAACTTA+GGG | + | chr1_1:61920844-61920863 | Msa0034020:intron | 30.0% | |
| AATAAGCTAAAAACAACTGG+TGG | - | chr1_1:61920959-61920978 | None:intergenic | 30.0% | |
| GGAAATAAGCTAAAAACAAC+TGG | - | chr1_1:61920962-61920981 | None:intergenic | 30.0% | |
| AAGTTATCTTGAAGAGCTTA+TGG | - | chr1_1:61920983-61921002 | None:intergenic | 30.0% | |
| ! | TGATTACCATAAGCACTTTT+TGG | - | chr1_1:61921148-61921167 | None:intergenic | 30.0% |
| AAATTAAAATCAGTTAGGGG+TGG | + | chr1_1:61921439-61921458 | Msa0034020:intron | 30.0% | |
| AGAGATCTTTCATAAAGATC+AGG | - | chr1_1:61921671-61921690 | None:intergenic | 30.0% | |
| ! | GACATTATGCACTTTTCAAT+TGG | + | chr1_1:61921795-61921814 | Msa0034020:CDS | 30.0% |
| TTCAATTGGAAATGCTATTC+CGG | + | chr1_1:61921809-61921828 | Msa0034020:CDS | 30.0% | |
| TTTCCATCTCTATTGTCAAT+GGG | - | chr1_1:61921855-61921874 | None:intergenic | 30.0% | |
| ATTTCCATCTCTATTGTCAA+TGG | - | chr1_1:61921856-61921875 | None:intergenic | 30.0% | |
| ATTGACAATAGAGATGGAAA+TGG | + | chr1_1:61921855-61921874 | Msa0034020:CDS | 30.0% | |
| CTCCTTAACTTTAACCATAT+CGG | + | chr1_1:61921903-61921922 | Msa0034020:intron | 30.0% | |
| TTTCCTATAATCGTTCATAC+AGG | + | chr1_1:61921982-61922001 | Msa0034020:intron | 30.0% | |
| AAACCTGTATGAACGATTAT+AGG | - | chr1_1:61921988-61922007 | None:intergenic | 30.0% | |
| TATAATCGTTCATACAGGTT+TGG | + | chr1_1:61921987-61922006 | Msa0034020:intron | 30.0% | |
| !! | TATGCCTTTTATTTAAGGGT+TGG | + | chr1_1:61922372-61922391 | Msa0034020:intron | 30.0% |
| !!! | AACATTTTCAGGTGAGAAAT+GGG | - | chr1_1:61922429-61922448 | None:intergenic | 30.0% |
| !!! | AAACATTTTCAGGTGAGAAA+TGG | - | chr1_1:61922430-61922449 | None:intergenic | 30.0% |
| AGATCTAGCGATTAATTAGT+TGG | + | chr1_1:61922804-61922823 | Msa0034020:intron | 30.0% | |
| !!! | ATTGTTTTAAACCTTGCATG+AGG | + | chr1_1:61922954-61922973 | Msa0034020:intron | 30.0% |
| ! | AATTTTAAATTGGGTGTGTG+GGG | - | chr1_1:61923116-61923135 | None:intergenic | 30.0% |
| ! | CAAATTTTAAATTGGGTGTG+TGG | - | chr1_1:61923118-61923137 | None:intergenic | 30.0% |
| ! | TGCTTAATCATTTTGTGAAG+TGG | - | chr1_1:61923143-61923162 | None:intergenic | 30.0% |
| CAAAATGATTAAGCAGTGAT+TGG | + | chr1_1:61923148-61923167 | Msa0034020:intron | 30.0% | |
| ! | AATTAAGGCATCTGTATAGA+AGG | + | chr1_1:61923242-61923261 | Msa0034020:intron | 30.0% |
| ! | ATTAAGGCATCTGTATAGAA+GGG | + | chr1_1:61923243-61923262 | Msa0034020:intron | 30.0% |
| CAATTTATTAGTGCCTAACT+TGG | + | chr1_1:61923315-61923334 | Msa0034020:intron | 30.0% | |
| AGATTGACAAACACATTTGT+TGG | + | chr1_1:61923383-61923402 | Msa0034020:intron | 30.0% | |
| GATTGACAAACACATTTGTT+GGG | + | chr1_1:61923384-61923403 | Msa0034020:intron | 30.0% | |
| AATCCCATTGAGACAAATAA+AGG | - | chr1_1:61923471-61923490 | None:intergenic | 30.0% | |
| ATATAGAAAAGGACACAATC+TGG | - | chr1_1:61923569-61923588 | None:intergenic | 30.0% | |
| CGCTGTTAATGTTTATGAAT+TGG | + | chr1_1:61923695-61923714 | Msa0034020:intron | 30.0% | |
| ! | CTTTCATATGATTTGAAGTG+GGG | + | chr1_1:61923747-61923766 | Msa0034020:intron | 30.0% |
| TAGGGATATACATTAAGCAT+TGG | + | chr1_1:61923948-61923967 | Msa0034020:intron | 30.0% | |
| CATTAACTGAGAACAGAAAA+AGG | - | chr1_1:61923975-61923994 | None:intergenic | 30.0% | |
| TCGGAAGATAGTTAATTGAT+AGG | - | chr1_1:61924098-61924117 | None:intergenic | 30.0% | |
| AATTCTATATGGAGGGATTT+CGG | - | chr1_1:61924192-61924211 | None:intergenic | 30.0% | |
| AAATCCCTCCATATAGAATT+AGG | + | chr1_1:61924192-61924211 | Msa0034020:intron | 30.0% | |
| GTTTACCTAATTCTATATGG+AGG | - | chr1_1:61924200-61924219 | None:intergenic | 30.0% | |
| !!! | TGGTATTTTTAAAACGTTGG+TGG | - | chr1_1:61924400-61924419 | None:intergenic | 30.0% |
| TTAAAAATACCACTTTGCTG+GGG | + | chr1_1:61924408-61924427 | Msa0034020:intron | 30.0% | |
| ATTACATTAACCTACCTAGT+TGG | - | chr1_1:61924739-61924758 | None:intergenic | 30.0% | |
| TCCATCAAGGATGAAAAAAT+GGG | - | chr1_1:61924871-61924890 | None:intergenic | 30.0% | |
| ATCCATCAAGGATGAAAAAA+TGG | - | chr1_1:61924872-61924891 | None:intergenic | 30.0% | |
| TGTTTCAACGTATCTAATAC+TGG | + | chr1_1:61924906-61924925 | Msa0034020:intron | 30.0% | |
| GTTTCAACGTATCTAATACT+GGG | + | chr1_1:61924907-61924926 | Msa0034020:intron | 30.0% | |
| ! | TGTAAGAGAGCTCTAATTTA+GGG | + | chr1_1:61924981-61925000 | Msa0034020:intron | 30.0% |
| TATGTAGAGGACAAAAGTAA+GGG | + | chr1_1:61925116-61925135 | Msa0034020:intron | 30.0% | |
| ACCCTATCATTTAGTTATTC+TGG | + | chr1_1:61925260-61925279 | Msa0034020:intron | 30.0% | |
| !! | CTCTATAACAGGTTTTGTAA+AGG | + | chr1_1:61925316-61925335 | Msa0034020:intron | 30.0% |
| CTCTTCTAAATGCATCATAA+AGG | - | chr1_1:61925446-61925465 | None:intergenic | 30.0% | |
| AATAGGGATTCAAACATAAG+AGG | - | chr1_1:61925500-61925519 | None:intergenic | 30.0% | |
| AAATCCTTCTAGATAACTCA+TGG | + | chr1_1:61925547-61925566 | Msa0034020:intron | 30.0% | |
| !! | ATCATAATGAATTCTGGTTC+TGG | + | chr1_1:61925597-61925616 | Msa0034020:intron | 30.0% |
| TGTAGTTTAGTATGTGACTT+GGG | - | chr1_1:61925633-61925652 | None:intergenic | 30.0% | |
| TTGTAGTTTAGTATGTGACT+TGG | - | chr1_1:61925634-61925653 | None:intergenic | 30.0% | |
| !! | GCTATTTTGTCAAACAGTTT+TGG | + | chr1_1:61925682-61925701 | Msa0034020:intron | 30.0% |
| TTGGATAAGATATCTTCTAC+CGG | + | chr1_1:61925707-61925726 | Msa0034020:intron | 30.0% | |
| TTGCAATACCTTCTTTACAA+AGG | + | chr1_1:61925736-61925755 | Msa0034020:intron | 30.0% | |
| !!! | GTTTGGTTGTTTTAGCTATT+GGG | - | chr1_1:61925797-61925816 | None:intergenic | 30.0% |
| !!! | AGTTTGGTTGTTTTAGCTAT+TGG | - | chr1_1:61925798-61925817 | None:intergenic | 30.0% |
| !! | AACAACCAAACTTTAAAGTG+CGG | + | chr1_1:61925806-61925825 | Msa0034020:intron | 30.0% |
| !!! | TGCGGTCTTTTTTATTTTTG+TGG | + | chr1_1:61925824-61925843 | Msa0034020:intron | 30.0% |
| CATGCAAATTTATACCTTAC+AGG | + | chr1_1:61926017-61926036 | Msa0034020:intron | 30.0% | |
| ACTATTTAAAGGTTCTCCAT+TGG | - | chr1_1:61926327-61926346 | None:intergenic | 30.0% | |
| GTTCAATAGTCCAAGTATAA+TGG | + | chr1_1:61926503-61926522 | Msa0034020:three_prime_UTR | 30.0% | |
| TAGATCACAAATGGAATACG+TGG | + | chr1_1:61918827-61918846 | Msa0034020:five_prime_UTR | 35.0% | |
| AGATCACAAATGGAATACGT+GGG | + | chr1_1:61918828-61918847 | Msa0034020:five_prime_UTR | 35.0% | |
| ! | TTGTGTCTTGTTGCTAACTA+AGG | - | chr1_1:61918867-61918886 | None:intergenic | 35.0% |
| !! | AACAAGTGCTGGTGAAAAAA+AGG | + | chr1_1:61918917-61918936 | Msa0034020:five_prime_UTR | 35.0% |
| ATTTGATAGATCGCGATTTG+TGG | - | chr1_1:61919060-61919079 | None:intergenic | 35.0% | |
| TGTTTATTCACACGAAGAGT+CGG | + | chr1_1:61919237-61919256 | Msa0034020:CDS | 35.0% | |
| ! | AATAACACCGGGTTGAAATT+CGG | - | chr1_1:61919305-61919324 | None:intergenic | 35.0% |
| ACCATCAAGTGTAATAACAC+CGG | - | chr1_1:61919317-61919336 | None:intergenic | 35.0% | |
| ATCAATGTCCTTCCAATCAT+CGG | - | chr1_1:61919344-61919363 | None:intergenic | 35.0% | |
| ATGATTGGAAGGACATTGAT+GGG | + | chr1_1:61919344-61919363 | Msa0034020:CDS | 35.0% | |
| GCTGAAAATGAATTCAATGG+CGG | + | chr1_1:61919403-61919422 | Msa0034020:CDS | 35.0% | |
| !! | TTCTTTCTGCTTCAAGTTGA+TGG | + | chr1_1:61919547-61919566 | Msa0034020:CDS | 35.0% |
| GTGATTATGCCTACTCTAAT+GGG | + | chr1_1:61919569-61919588 | Msa0034020:CDS | 35.0% | |
| ! | TTTGATGACTAATCTTGGTC+GGG | + | chr1_1:61919732-61919751 | Msa0034020:intron | 35.0% |
| ATTGAGACGCTTATCAACAA+CGG | - | chr1_1:61920038-61920057 | None:intergenic | 35.0% | |
| ACTCTTATATCCCATCATGT+TGG | - | chr1_1:61920257-61920276 | None:intergenic | 35.0% | |
| TGAAACATAAGTGCAACAGA+GGG | - | chr1_1:61920389-61920408 | None:intergenic | 35.0% | |
| TTGAAACATAAGTGCAACAG+AGG | - | chr1_1:61920390-61920409 | None:intergenic | 35.0% | |
| !!! | TTTTAGGTTTTGGAGGACTT+GGG | - | chr1_1:61920637-61920656 | None:intergenic | 35.0% |
| !!! | ATTTTAGGTTTTGGAGGACT+TGG | - | chr1_1:61920638-61920657 | None:intergenic | 35.0% |
| !!! | GAGGATATTTTAGGTTTTGG+AGG | - | chr1_1:61920644-61920663 | None:intergenic | 35.0% |
| GGGAACTCAAAATGTATTGA+AGG | - | chr1_1:61920666-61920685 | None:intergenic | 35.0% | |
| ! | TTTGAGTTCCCTCAAATTAG+GGG | + | chr1_1:61920675-61920694 | Msa0034020:intron | 35.0% |
| ACAAAATCCCCCTAATTTGA+GGG | - | chr1_1:61920686-61920705 | None:intergenic | 35.0% | |
| TACAAAATCCCCCTAATTTG+AGG | - | chr1_1:61920687-61920706 | None:intergenic | 35.0% | |
| TGTAAGGTATGAAGGGATTT+GGG | - | chr1_1:61920744-61920763 | None:intergenic | 35.0% | |
| ! | GAGAAAGTGTAAGGTATGAA+GGG | - | chr1_1:61920751-61920770 | None:intergenic | 35.0% |
| ! | AAAAGGAAGGAGAAAGTGTA+AGG | - | chr1_1:61920760-61920779 | None:intergenic | 35.0% |
| !!! | TTTTTTGGGAATTTAGGAGG+GGG | - | chr1_1:61920792-61920811 | None:intergenic | 35.0% |
| !!! | GTTTTTTGGGAATTTAGGAG+GGG | - | chr1_1:61920793-61920812 | None:intergenic | 35.0% |
| !!! | CATGAAGCGATGAAGTTTTT+TGG | - | chr1_1:61920807-61920826 | None:intergenic | 35.0% |
| !! | TTTCAAATCTAAGGGGCATT+TGG | + | chr1_1:61920829-61920848 | Msa0034020:intron | 35.0% |
| GGCATTTGGATAAACAACTT+AGG | + | chr1_1:61920843-61920862 | Msa0034020:intron | 35.0% | |
| TGACTGTTTGAGAGAGTTTA+TGG | + | chr1_1:61920915-61920934 | Msa0034020:intron | 35.0% | |
| !! | ACACTTCCAAAAAGTGCTTA+TGG | + | chr1_1:61921139-61921158 | Msa0034020:intron | 35.0% |
| AGGTGTAAGAATGACATGTT+AGG | - | chr1_1:61921376-61921395 | None:intergenic | 35.0% | |
| !!! | ATGAGGTGTTGGGTTTTAAT+TGG | - | chr1_1:61921563-61921582 | None:intergenic | 35.0% |
| TGCTGATCAGTTAAAGAAAG+TGG | + | chr1_1:61921465-61921484 | Msa0034020:intron | 35.0% | |
| GCTGATCAGTTAAAGAAAGT+GGG | + | chr1_1:61921466-61921485 | Msa0034020:intron | 35.0% | |
| CTGATCAGTTAAAGAAAGTG+GGG | + | chr1_1:61921467-61921486 | Msa0034020:intron | 35.0% | |
| AAGAAGAGAGAGAAAACATC+AGG | + | chr1_1:61921491-61921510 | Msa0034020:intron | 35.0% | |
| !!! | ATGAGGTGTTGGGTTTTAAT+TGG | + | chr1_1:61921563-61921582 | Msa0034020:intron | 35.0% |
| CTTAATTGTTGTAAGATGGG+TGG | + | chr1_1:61921717-61921736 | Msa0034020:intron | 35.0% | |
| TCAATTGGAAATGCTATTCC+GGG | + | chr1_1:61921810-61921829 | Msa0034020:CDS | 35.0% | |
| AATCCCATTGACAATAGAGA+TGG | + | chr1_1:61921849-61921868 | Msa0034020:CDS | 35.0% | |
| AGCCGATATGGTTAAAGTTA+AGG | - | chr1_1:61921908-61921927 | None:intergenic | 35.0% | |
| TCATAAATTGTCAGCCGATA+TGG | - | chr1_1:61921920-61921939 | None:intergenic | 35.0% | |
| AGGCATAAAGATCAACCAAA+TGG | - | chr1_1:61922013-61922032 | None:intergenic | 35.0% | |
| ATTTGGTTGATCTTTATGCC+TGG | + | chr1_1:61922012-61922031 | Msa0034020:CDS | 35.0% | |
| AACGAGATTAAAACAGCAAG+TGG | + | chr1_1:61922149-61922168 | Msa0034020:intron | 35.0% | |
| TCATGAAGCAAACTACTTGA+TGG | - | chr1_1:61922217-61922236 | None:intergenic | 35.0% | |
| !! | AAGTAGTTTGCTTCATGACT+TGG | + | chr1_1:61922219-61922238 | Msa0034020:intron | 35.0% |
| TGCACCAACCCTTAAATAAA+AGG | - | chr1_1:61922379-61922398 | None:intergenic | 35.0% | |
| CGAGGTAGATAAGTGTTAAA+AGG | - | chr1_1:61922489-61922508 | None:intergenic | 35.0% | |
| TTAGAGATAGGATGTTGTGT+TGG | + | chr1_1:61922554-61922573 | Msa0034020:intron | 35.0% | |
| AAATGACAACCTTAGAGAGA+AGG | + | chr1_1:61922609-61922628 | Msa0034020:intron | 35.0% | |
| AGCACCTATCATAGAAAAGA+TGG | + | chr1_1:61922639-61922658 | Msa0034020:intron | 35.0% | |
| ACCTATCATAGAAAAGATGG+TGG | + | chr1_1:61922642-61922661 | Msa0034020:intron | 35.0% | |
| ! | TCCACCATCTTTTCTATGAT+AGG | - | chr1_1:61922646-61922665 | None:intergenic | 35.0% |
| !! | TAGAAAAGATGGTGGAAACT+CGG | + | chr1_1:61922650-61922669 | Msa0034020:intron | 35.0% |
| CTAATCTACTTTCCTCACTA+GGG | - | chr1_1:61922716-61922735 | None:intergenic | 35.0% | |
| TCTAATCTACTTTCCTCACT+AGG | - | chr1_1:61922717-61922736 | None:intergenic | 35.0% | |
| AGTGAGGAAAGTAGATTAGA+TGG | + | chr1_1:61922717-61922736 | Msa0034020:intron | 35.0% | |
| AGGAAAGTAGATTAGATGGA+GGG | + | chr1_1:61922721-61922740 | Msa0034020:intron | 35.0% | |
| ! | ATTTGATAGAACGTGTCGTT+TGG | + | chr1_1:61922840-61922859 | Msa0034020:intron | 35.0% |
| ATAATTGACATCCTCATGCA+AGG | - | chr1_1:61922968-61922987 | None:intergenic | 35.0% | |
| ATTTGACATGGCTAAGCTAA+AGG | - | chr1_1:61922997-61923016 | None:intergenic | 35.0% | |
| TAAGATTGCTTCTTCCACAT+TGG | + | chr1_1:61923204-61923223 | Msa0034020:intron | 35.0% | |
| ! | ATTCATCTTTTCCTCCAATG+TGG | - | chr1_1:61923221-61923240 | None:intergenic | 35.0% |
| ! | TTAAGGCATCTGTATAGAAG+GGG | + | chr1_1:61923244-61923263 | Msa0034020:intron | 35.0% |
| TATAGAAGGGGACAAATAGA+TGG | + | chr1_1:61923256-61923275 | Msa0034020:intron | 35.0% | |
| ACTTCTTATGTTGAGAATCC+TGG | - | chr1_1:61923418-61923437 | None:intergenic | 35.0% | |
| TTCTGTTTGTGGTCAAAATG+CGG | + | chr1_1:61923506-61923525 | Msa0034020:intron | 35.0% | |
| AATGTGAGACGTATCTTCTT+TGG | - | chr1_1:61923810-61923829 | None:intergenic | 35.0% | |
| TCACATTGCGACCATATAAT+TGG | + | chr1_1:61923823-61923842 | Msa0034020:intron | 35.0% | |
| TAAGCTATAACCCTACAATG+TGG | + | chr1_1:61923851-61923870 | Msa0034020:intron | 35.0% | |
| AAGCTATAACCCTACAATGT+GGG | + | chr1_1:61923852-61923871 | Msa0034020:intron | 35.0% | |
| GATGTTTAACCCACATTGTA+GGG | - | chr1_1:61923864-61923883 | None:intergenic | 35.0% | |
| AGATGTTTAACCCACATTGT+AGG | - | chr1_1:61923865-61923884 | None:intergenic | 35.0% | |
| !! | AATATTGGTTGGTAGTGTAG+TGG | + | chr1_1:61924158-61924177 | Msa0034020:intron | 35.0% |
| ATTCTATATGGAGGGATTTC+GGG | - | chr1_1:61924191-61924210 | None:intergenic | 35.0% | |
| !!! | GTGGAAGATGTTTGTTTTTG+CGG | + | chr1_1:61924430-61924449 | Msa0034020:intron | 35.0% |
| !!! | TGGAAGATGTTTGTTTTTGC+GGG | + | chr1_1:61924431-61924450 | Msa0034020:intron | 35.0% |
| CTGAGGACATAAATGATGTA+TGG | - | chr1_1:61924639-61924658 | None:intergenic | 35.0% | |
| CATACATCATTTATGTCCTC+AGG | + | chr1_1:61924637-61924656 | Msa0034020:intron | 35.0% | |
| ! | TAATTAGTGCTGTTCCAACT+AGG | + | chr1_1:61924722-61924741 | Msa0034020:intron | 35.0% |
| ! | CTAAACTTTTGGCACTTAGT+GGG | - | chr1_1:61924763-61924782 | None:intergenic | 35.0% |
| ! | ACTAAACTTTTGGCACTTAG+TGG | - | chr1_1:61924764-61924783 | None:intergenic | 35.0% |
| ! | ATCCATAAAAGAAGCATGAC+TGG | + | chr1_1:61924785-61924804 | Msa0034020:intron | 35.0% |
| ! | AACCAGTCATGCTTCTTTTA+TGG | - | chr1_1:61924790-61924809 | None:intergenic | 35.0% |
| !! | CATGACTGGTTTGTTTCTTA+TGG | + | chr1_1:61924799-61924818 | Msa0034020:intron | 35.0% |
| !!! | ACCCATTTTTTCATCCTTGA+TGG | + | chr1_1:61924867-61924886 | Msa0034020:intron | 35.0% |
| ! | TAACTTTTACTCGACTCCAA+TGG | + | chr1_1:61924931-61924950 | Msa0034020:intron | 35.0% |
| ! | GTGTAAGAGAGCTCTAATTT+AGG | + | chr1_1:61924980-61924999 | Msa0034020:intron | 35.0% |
| TTGACGATACATGTATGTAG+AGG | + | chr1_1:61925103-61925122 | Msa0034020:intron | 35.0% | |
| GTATGTAGAGGACAAAAGTA+AGG | + | chr1_1:61925115-61925134 | Msa0034020:intron | 35.0% | |
| CTCACATGATTCTCTATAAC+AGG | + | chr1_1:61925305-61925324 | Msa0034020:intron | 35.0% | |
| TAGTCCATGAGTTATCTAGA+AGG | - | chr1_1:61925554-61925573 | None:intergenic | 35.0% | |
| GTAGTTTAGTATGTGACTTG+GGG | - | chr1_1:61925632-61925651 | None:intergenic | 35.0% | |
| !!! | TTGTCAAACAGTTTTGGCTT+TGG | + | chr1_1:61925688-61925707 | Msa0034020:intron | 35.0% |
| !! | GAAGGTATTGCAAAACAAAC+CGG | - | chr1_1:61925729-61925748 | None:intergenic | 35.0% |
| GCAAGTTTCCTTTGTAAAGA+AGG | - | chr1_1:61925747-61925766 | None:intergenic | 35.0% | |
| !! | AAAGACCGCACTTTAAAGTT+TGG | - | chr1_1:61925814-61925833 | None:intergenic | 35.0% |
| ! | TTTTGTGGATGTAGTTGAAG+TGG | + | chr1_1:61925839-61925858 | Msa0034020:intron | 35.0% |
| ! | AACACGCATGAATGTCATTT+AGG | + | chr1_1:61925974-61925993 | Msa0034020:intron | 35.0% |
| ACTACTCTGTTAACTGTGAT+TGG | + | chr1_1:61926127-61926146 | Msa0034020:CDS | 35.0% | |
| CTACTCTGTTAACTGTGATT+GGG | + | chr1_1:61926128-61926147 | Msa0034020:CDS | 35.0% | |
| !! | CTGCTCTGAGATATATCAAT+CGG | - | chr1_1:61926156-61926175 | None:intergenic | 35.0% |
| TGTCTGTGTTTGTGAGTTAT+CGG | + | chr1_1:61926271-61926290 | Msa0034020:CDS | 35.0% | |
| TGTATCAAACAGCTTGAGTT+TGG | + | chr1_1:61926346-61926365 | Msa0034020:three_prime_UTR | 35.0% | |
| GTATCAAACAGCTTGAGTTT+GGG | + | chr1_1:61926347-61926366 | Msa0034020:three_prime_UTR | 35.0% | |
| AGATGGAACTCCATTATACT+TGG | - | chr1_1:61926516-61926535 | None:intergenic | 35.0% | |
| TTATGATGCATGAAGTGGCA+AGG | + | chr1_1:61918804-61918823 | Msa0034020:five_prime_UTR | 40.0% | |
| GATCACAAATGGAATACGTG+GGG | + | chr1_1:61918829-61918848 | Msa0034020:five_prime_UTR | 40.0% | |
| AAGGAAAATGCAACAAGTGC+TGG | + | chr1_1:61918906-61918925 | Msa0034020:five_prime_UTR | 40.0% | |
| GTTGATTGAACTTGAAGTGG+TGG | + | chr1_1:61918990-61919009 | Msa0034020:five_prime_UTR | 40.0% | |
| GTTTATTCACACGAAGAGTC+GGG | + | chr1_1:61919238-61919257 | Msa0034020:CDS | 40.0% | |
| CCATCAAGTGTAATAACACC+GGG | - | chr1_1:61919316-61919335 | None:intergenic | 40.0% | |
| GATGATTGGAAGGACATTGA+TGG | + | chr1_1:61919343-61919362 | Msa0034020:CDS | 40.0% | |
| AGCAAGAAGAAGAGAGAAGT+GGG | - | chr1_1:61919371-61919390 | None:intergenic | 40.0% | |
| GGTGATTATGCCTACTCTAA+TGG | + | chr1_1:61919568-61919587 | Msa0034020:CDS | 40.0% | |
| CACATCTTACCCATTAGAGT+AGG | - | chr1_1:61919581-61919600 | None:intergenic | 40.0% | |
| ! | TTGATGACTAATCTTGGTCG+GGG | + | chr1_1:61919733-61919752 | Msa0034020:intron | 40.0% |
| ATGGGAAAAACGTGGTTAAG+CGG | - | chr1_1:61919798-61919817 | None:intergenic | 40.0% | |
| !!! | GAACTCGAGACCTTGTTTTA+GGG | + | chr1_1:61919829-61919848 | Msa0034020:intron | 40.0% |
| CTCAAACTTGATCCCAGTAT+TGG | - | chr1_1:61919863-61919882 | None:intergenic | 40.0% | |
| ATACTGGGATCAAGTTTGAG+TGG | + | chr1_1:61919863-61919882 | Msa0034020:intron | 40.0% | |
| TTATTGAGGGTCCAACATGA+TGG | + | chr1_1:61920243-61920262 | Msa0034020:intron | 40.0% | |
| TATTGAGGGTCCAACATGAT+GGG | + | chr1_1:61920244-61920263 | Msa0034020:intron | 40.0% | |
| TATTTGCGAGTTTGGATGGT+AGG | + | chr1_1:61920475-61920494 | Msa0034020:intron | 40.0% | |
| ATTTGCGAGTTTGGATGGTA+GGG | + | chr1_1:61920476-61920495 | Msa0034020:intron | 40.0% | |
| TTGAGTTCCCTCAAATTAGG+GGG | + | chr1_1:61920676-61920695 | Msa0034020:intron | 40.0% | |
| GTGTAAGGTATGAAGGGATT+TGG | - | chr1_1:61920745-61920764 | None:intergenic | 40.0% | |
| ! | GGAGAAAGTGTAAGGTATGA+AGG | - | chr1_1:61920752-61920771 | None:intergenic | 40.0% |
| GGGGAATTTGAGAAAAAGGA+AGG | - | chr1_1:61920773-61920792 | None:intergenic | 40.0% | |
| TAAACAACTTAGGGCCTGTT+TGG | + | chr1_1:61920853-61920872 | Msa0034020:intron | 40.0% | |
| TCATATACGTCCATCCAAAC+AGG | - | chr1_1:61920870-61920889 | None:intergenic | 40.0% | |
| !!! | GTGTTGGGTTTTAATTGGCT+AGG | - | chr1_1:61921568-61921587 | None:intergenic | 40.0% |
| TTAAAATCAGTTAGGGGTGG+TGG | + | chr1_1:61921442-61921461 | Msa0034020:intron | 40.0% | |
| !!! | GTGTTGGGTTTTAATTGGCT+GGG | + | chr1_1:61921568-61921587 | Msa0034020:intron | 40.0% |
| TGCACAAATAAGACCTGCAA+AGG | + | chr1_1:61921762-61921781 | Msa0034020:CDS | 40.0% | |
| GACAATAGAGATGGAAATGG+CGG | + | chr1_1:61921858-61921877 | Msa0034020:CDS | 40.0% | |
| !!! | GAGCTATTTTTCATGAGACG+TGG | + | chr1_1:61921951-61921970 | Msa0034020:intron | 40.0% |
| TTCATACAGGTTTGGCCATT+TGG | + | chr1_1:61921995-61922014 | Msa0034020:intron | 40.0% | |
| GTCTGTAGCAATAGTGAATC+CGG | + | chr1_1:61922296-61922315 | Msa0034020:intron | 40.0% | |
| GAGTGAAGTCATTCAAGCAA+TGG | - | chr1_1:61922322-61922341 | None:intergenic | 40.0% | |
| ACAACCTTAGAGAGAAGGTT+GGG | + | chr1_1:61922614-61922633 | Msa0034020:intron | 40.0% | |
| CACTTATAGATTCCCTAGTG+AGG | + | chr1_1:61922701-61922720 | Msa0034020:intron | 40.0% | |
| GAGGAAAGTAGATTAGATGG+AGG | + | chr1_1:61922720-61922739 | Msa0034020:intron | 40.0% | |
| GAGGGTAGTCAAATCATTAG+AGG | + | chr1_1:61922739-61922758 | Msa0034020:intron | 40.0% | |
| ! | AAGCATTTTCCCACTAAGTG+GGG | - | chr1_1:61922879-61922898 | None:intergenic | 40.0% |
| ! | CAAGCATTTTCCCACTAAGT+GGG | - | chr1_1:61922880-61922899 | None:intergenic | 40.0% |
| AGCTTAGCCATGTCAAATCA+AGG | + | chr1_1:61922999-61923018 | Msa0034020:intron | 40.0% | |
| ! | ACGCAAACCTTGATTTGACA+TGG | - | chr1_1:61923009-61923028 | None:intergenic | 40.0% |
| ! | ATGTTGAGAATCCTGGTTTG+TGG | - | chr1_1:61923411-61923430 | None:intergenic | 40.0% |
| CAATCACTTCGTTCTGTTTG+TGG | + | chr1_1:61923495-61923514 | Msa0034020:intron | 40.0% | |
| !! | CAATCTGGTTTGGCATAATG+AGG | - | chr1_1:61923554-61923573 | None:intergenic | 40.0% |
| GAAAAGGACACAATCTGGTT+TGG | - | chr1_1:61923564-61923583 | None:intergenic | 40.0% | |
| !!! | GGAAGATGTTTGTTTTTGCG+GGG | + | chr1_1:61924432-61924451 | Msa0034020:intron | 40.0% |
| GAGAGACTCAATATCCATCA+AGG | - | chr1_1:61924884-61924903 | None:intergenic | 40.0% | |
| TTTACTCGACTCCAATGGAA+TGG | + | chr1_1:61924936-61924955 | Msa0034020:intron | 40.0% | |
| TTACTCGACTCCAATGGAAT+GGG | + | chr1_1:61924937-61924956 | Msa0034020:intron | 40.0% | |
| ATGCAGAAAGCTCGCATTTA+AGG | - | chr1_1:61925234-61925253 | None:intergenic | 40.0% | |
| GAGAACCCTTATGCAGAAAA+TGG | + | chr1_1:61925341-61925360 | Msa0034020:CDS | 40.0% | |
| TTGAATTCTCTAGGCCTTTG+AGG | + | chr1_1:61925384-61925403 | Msa0034020:CDS | 40.0% | |
| AGATGATCCATAGTCCTCAA+AGG | - | chr1_1:61925401-61925420 | None:intergenic | 40.0% | |
| !!! | GTTGTTTTAGCTATTGGGCA+TGG | - | chr1_1:61925792-61925811 | None:intergenic | 40.0% |
| ACAGTTAACAGAGTAGTGTC+CGG | - | chr1_1:61926124-61926143 | None:intergenic | 40.0% | |
| GTCTGTGTTTGTGAGTTATC+GGG | + | chr1_1:61926272-61926291 | Msa0034020:CDS | 40.0% | |
| AAGGTTCTCCATTGGAGTAA+AGG | - | chr1_1:61926319-61926338 | None:intergenic | 40.0% | |
| TGCAACAACTAAGCACAAGA+TGG | - | chr1_1:61926533-61926552 | None:intergenic | 40.0% | |
| AACGTGCAATTTCCTTTCAC+AGG | + | chr1_1:61926552-61926571 | Msa0034020:three_prime_UTR | 40.0% | |
| ACGTGCAATTTCCTTTCACA+GGG | + | chr1_1:61926553-61926572 | Msa0034020:three_prime_UTR | 40.0% | |
| GTGGCAAGGTAGATCACAAA+TGG | + | chr1_1:61918818-61918837 | Msa0034020:five_prime_UTR | 45.0% | |
| ! | GTGCTTGACTTTTCTGAGCT+TGG | - | chr1_1:61919036-61919055 | None:intergenic | 45.0% |
| CTCAACATGAATCTCTGACC+CGG | - | chr1_1:61919281-61919300 | None:intergenic | 45.0% | |
| GTTGAGTCCGAATTTCAACC+CGG | + | chr1_1:61919295-61919314 | Msa0034020:CDS | 45.0% | |
| !! | CCCGGTGTTATTACACTTGA+TGG | + | chr1_1:61919313-61919332 | Msa0034020:CDS | 45.0% |
| ! | TTGATGGTCATGCCGATGAT+TGG | + | chr1_1:61919329-61919348 | Msa0034020:CDS | 45.0% |
| GAGCAAGAAGAAGAGAGAAG+TGG | - | chr1_1:61919372-61919391 | None:intergenic | 45.0% | |
| TTGTTGCAGAGTGTGCATGA+TGG | + | chr1_1:61919514-61919533 | Msa0034020:intron | 45.0% | |
| TGGGAAAAACGTGGTTAAGC+GGG | - | chr1_1:61919797-61919816 | None:intergenic | 45.0% | |
| ACTTGTGGATGGGAAAAACG+TGG | - | chr1_1:61919806-61919825 | None:intergenic | 45.0% | |
| !!! | CGAACTCGAGACCTTGTTTT+AGG | + | chr1_1:61919828-61919847 | Msa0034020:intron | 45.0% |
| ! | CTTGATCCCAGTATTGGACT+CGG | - | chr1_1:61919857-61919876 | None:intergenic | 45.0% |
| GAGGTGACCGGTATATTTAG+TGG | + | chr1_1:61919932-61919951 | Msa0034020:intron | 45.0% | |
| AATGCTCCAAAACCACAGGA+AGG | - | chr1_1:61919986-61920005 | None:intergenic | 45.0% | |
| GGTTAATGCTCCAAAACCAC+AGG | - | chr1_1:61919990-61920009 | None:intergenic | 45.0% | |
| CAACGGATATTACTGGGAGT+CGG | - | chr1_1:61920021-61920040 | None:intergenic | 45.0% | |
| TGAGGGTCTATTTGCGAGTT+TGG | + | chr1_1:61920467-61920486 | Msa0034020:intron | 45.0% | |
| GGTCTATTTGCGAGTTTGGA+TGG | + | chr1_1:61920471-61920490 | Msa0034020:intron | 45.0% | |
| TTTGCGAGTTTGGATGGTAG+GGG | + | chr1_1:61920477-61920496 | Msa0034020:intron | 45.0% | |
| AGGTATGAAGGGATTTGGGA+GGG | - | chr1_1:61920740-61920759 | None:intergenic | 45.0% | |
| AAGGTATGAAGGGATTTGGG+AGG | - | chr1_1:61920741-61920760 | None:intergenic | 45.0% | |
| GGAGGGGGAATTTGAGAAAA+AGG | - | chr1_1:61920777-61920796 | None:intergenic | 45.0% | |
| !!! | GGTGTTGGGTTTTAATTGGC+TGG | + | chr1_1:61921567-61921586 | Msa0034020:intron | 45.0% |
| GGGTGTAAGAATGACGTGTT+AGG | + | chr1_1:61921588-61921607 | Msa0034020:intron | 45.0% | |
| GTCAACTTCATGACCTTTGC+AGG | - | chr1_1:61921778-61921797 | None:intergenic | 45.0% | |
| TTGGAAATGCTATTCCGGGA+CGG | + | chr1_1:61921814-61921833 | Msa0034020:CDS | 45.0% | |
| GAATCCACACTGCAGATACT+TGG | + | chr1_1:61922034-61922053 | Msa0034020:CDS | 45.0% | |
| TTGTGCATACCAGAACCTGA+AGG | - | chr1_1:61922071-61922090 | None:intergenic | 45.0% | |
| GAAGTCATTCAAGCAATGGC+CGG | - | chr1_1:61922318-61922337 | None:intergenic | 45.0% | |
| AGGATGTTGTGTTGGATGTG+TGG | + | chr1_1:61922562-61922581 | Msa0034020:intron | 45.0% | |
| GACAACCTTAGAGAGAAGGT+TGG | + | chr1_1:61922613-61922632 | Msa0034020:intron | 45.0% | |
| CAACCTTAGAGAGAAGGTTG+GGG | + | chr1_1:61922615-61922634 | Msa0034020:intron | 45.0% | |
| AAACTCGGCTTAGGTGGTTT+GGG | + | chr1_1:61922665-61922684 | Msa0034020:intron | 45.0% | |
| ! | ATTTTCCCACTAAGTGGGGT+CGG | - | chr1_1:61922875-61922894 | None:intergenic | 45.0% |
| ! | CCAAGCATTTTCCCACTAAG+TGG | - | chr1_1:61922881-61922900 | None:intergenic | 45.0% |
| CCACTTAGTGGGAAAATGCT+TGG | + | chr1_1:61922878-61922897 | Msa0034020:intron | 45.0% | |
| GATTGCTTCTTCCACATTGG+AGG | + | chr1_1:61923207-61923226 | Msa0034020:intron | 45.0% | |
| AGAAGGGGACAAATAGATGG+AGG | + | chr1_1:61923259-61923278 | Msa0034020:intron | 45.0% | |
| GAAGGGGACAAATAGATGGA+GGG | + | chr1_1:61923260-61923279 | Msa0034020:intron | 45.0% | |
| ! | ATTTGTTGGGACCACAAACC+AGG | + | chr1_1:61923397-61923416 | Msa0034020:intron | 45.0% |
| GCGGCATTTCTGCACAAAAT+AGG | + | chr1_1:61923525-61923544 | Msa0034020:intron | 45.0% | |
| ATTCTAGTGCACAGAACGAC+TGG | + | chr1_1:61923995-61924014 | Msa0034020:intron | 45.0% | |
| AGCAGCTTTACAGTTCACTC+AGG | + | chr1_1:61924036-61924055 | Msa0034020:intron | 45.0% | |
| AAAATACCACTTTGCTGGGG+TGG | + | chr1_1:61924411-61924430 | Msa0034020:intron | 45.0% | |
| !!! | AGATGTTTGTTTTTGCGGGG+TGG | + | chr1_1:61924435-61924454 | Msa0034020:intron | 45.0% |
| !!! | GATGTTTGTTTTTGCGGGGT+GGG | + | chr1_1:61924436-61924455 | Msa0034020:intron | 45.0% |
| ! | TAGTGCTGTTCCAACTAGGT+AGG | + | chr1_1:61924726-61924745 | Msa0034020:intron | 45.0% |
| TACTCGACTCCAATGGAATG+GGG | + | chr1_1:61924938-61924957 | Msa0034020:intron | 45.0% | |
| AGCTCATTTCCCCATTCCAT+TGG | - | chr1_1:61924950-61924969 | None:intergenic | 45.0% | |
| !! | CATTTAAGGTGCTGCGACTA+AGG | - | chr1_1:61925220-61925239 | None:intergenic | 45.0% |
| GACTATGGATCATCTGCAAC+AGG | + | chr1_1:61925406-61925425 | Msa0034020:CDS | 45.0% | |
| !!! | GTTTTAGCTATTGGGCATGG+CGG | - | chr1_1:61925789-61925808 | None:intergenic | 45.0% |
| TGTGGATGTAGTTGAAGTGG+AGG | + | chr1_1:61925842-61925861 | Msa0034020:intron | 45.0% | |
| GTGGATGTAGTTGAAGTGGA+GGG | + | chr1_1:61925843-61925862 | Msa0034020:intron | 45.0% | |
| TGCGTGTTTGCATCATGTGT+TGG | - | chr1_1:61925962-61925981 | None:intergenic | 45.0% | |
| GGTGAATTGCACATCCTGTA+AGG | - | chr1_1:61926034-61926053 | None:intergenic | 45.0% | |
| CAGGATGTGCAATTCACCAT+TGG | + | chr1_1:61926036-61926055 | Msa0034020:intron | 45.0% | |
| GATGTGCAATTCACCATTGG+CGG | + | chr1_1:61926039-61926058 | Msa0034020:CDS | 45.0% | |
| GGATCAAGCAAGATGTCTGT+CGG | + | chr1_1:61926060-61926079 | Msa0034020:CDS | 45.0% | |
| GGATTCTGGTATCCAGTAGA+TGG | + | chr1_1:61926081-61926100 | Msa0034020:CDS | 45.0% | |
| ATCCAGTAGATGGTAAGCCA+TGG | + | chr1_1:61926091-61926110 | Msa0034020:CDS | 45.0% | |
| TCTCAGAGCAGTTCATTGAG+TGG | + | chr1_1:61926165-61926184 | Msa0034020:CDS | 45.0% | |
| TTCATTGAGTGGCAAGTCAG+TGG | + | chr1_1:61926176-61926195 | Msa0034020:CDS | 45.0% | |
| ACTCAGCATCAAGTAGCTCA+TGG | + | chr1_1:61926199-61926218 | Msa0034020:CDS | 45.0% | |
| GGAGTAAAGGCTACACTCTT+GGG | - | chr1_1:61926306-61926325 | None:intergenic | 45.0% | |
| TGGAGTAAAGGCTACACTCT+TGG | - | chr1_1:61926307-61926326 | None:intergenic | 45.0% | |
| GAGTGTAGCCTTTACTCCAA+TGG | + | chr1_1:61926308-61926327 | Msa0034020:CDS | 45.0% | |
| CGTGCAATTTCCTTTCACAG+GGG | + | chr1_1:61926554-61926573 | Msa0034020:three_prime_UTR | 45.0% | |
| GTGCAATTTCCTTTCACAGG+GGG | + | chr1_1:61926555-61926574 | Msa0034020:three_prime_UTR | 45.0% | |
| GAAAAATAGCCCCCTGTGAA+AGG | - | chr1_1:61926567-61926586 | None:intergenic | 45.0% | |
| !!! | TTTTTTTAATTATTTTAATG+AGG | + | chr1_1:61921546-61921565 | Msa0034020:intron | 5.0% |
| !! | TTATATGATTAAAATAAAAA+AGG | + | chr1_1:61922120-61922139 | Msa0034020:intron | 5.0% |
| !!! | TTTTCTAAAATAATTATAAA+AGG | - | chr1_1:61924847-61924866 | None:intergenic | 5.0% |
| TGGTCATGCCGATGATTGGA+AGG | + | chr1_1:61919333-61919352 | Msa0034020:CDS | 50.0% | |
| TGGCGGAAAAATGACCGTGA+AGG | + | chr1_1:61919420-61919439 | Msa0034020:CDS | 50.0% | |
| GGGAAAAACGTGGTTAAGCG+GGG | - | chr1_1:61919796-61919815 | None:intergenic | 50.0% | |
| CGAGTTCGAGACTTGTGGAT+GGG | - | chr1_1:61919816-61919835 | None:intergenic | 50.0% | |
| TCGAGTTCGAGACTTGTGGA+TGG | - | chr1_1:61919817-61919836 | None:intergenic | 50.0% | |
| GGACTCGGATCCCTAAAACA+AGG | - | chr1_1:61919842-61919861 | None:intergenic | 50.0% | |
| TAGGGATCCGAGTCCAATAC+TGG | + | chr1_1:61919847-61919866 | Msa0034020:intron | 50.0% | |
| AGGGATCCGAGTCCAATACT+GGG | + | chr1_1:61919848-61919867 | Msa0034020:intron | 50.0% | |
| ! | TTGCGTCCTTCCTGTGGTTT+TGG | + | chr1_1:61919977-61919996 | Msa0034020:intron | 50.0% |
| TTACTGGGAGTCGGTAGCAA+CGG | - | chr1_1:61920012-61920031 | None:intergenic | 50.0% | |
| ATTTGGGAGGGGAGAGCTTT+CGG | - | chr1_1:61920728-61920747 | None:intergenic | 50.0% | |
| GGTATGAAGGGATTTGGGAG+GGG | - | chr1_1:61920739-61920758 | None:intergenic | 50.0% | |
| CAACTTAGGGCCTGTTTGGA+TGG | + | chr1_1:61920857-61920876 | Msa0034020:intron | 50.0% | |
| TTGTAAGATGGGTGGCTGTG+AGG | + | chr1_1:61921725-61921744 | Msa0034020:intron | 50.0% | |
| !! | GCAGGTCTTATTTGTGCACG+AGG | - | chr1_1:61921760-61921779 | None:intergenic | 50.0% |
| GTATCTGCAGTGTGGATTCC+AGG | - | chr1_1:61922033-61922052 | None:intergenic | 50.0% | |
| CCATCCAAGTATCTGCAGTG+TGG | - | chr1_1:61922041-61922060 | None:intergenic | 50.0% | |
| CCACACTGCAGATACTTGGA+TGG | + | chr1_1:61922038-61922057 | Msa0034020:CDS | 50.0% | |
| TGCAGATACTTGGATGGCAC+TGG | + | chr1_1:61922044-61922063 | Msa0034020:CDS | 50.0% | |
| !! | CAGCAAGTGGAAGTATCAGC+AGG | + | chr1_1:61922162-61922181 | Msa0034020:intron | 50.0% |
| CTACCCCAACCTTCTCTCTA+AGG | - | chr1_1:61922621-61922640 | None:intergenic | 50.0% | |
| !! | AGATGGTGGAAACTCGGCTT+AGG | + | chr1_1:61922656-61922675 | Msa0034020:intron | 50.0% |
| GAAACTCGGCTTAGGTGGTT+TGG | + | chr1_1:61922664-61922683 | Msa0034020:intron | 50.0% | |
| AGTGCACAGAACGACTGGAA+AGG | + | chr1_1:61924000-61924019 | Msa0034020:intron | 50.0% | |
| !! | AGAACGACTGGAAAGGTGCT+TGG | + | chr1_1:61924007-61924026 | Msa0034020:intron | 50.0% |
| TGCTGCTGACATGTTTCCTG+AGG | - | chr1_1:61924656-61924675 | None:intergenic | 50.0% | |
| ! | CTCTAGGCCTTTGAGGACTA+TGG | + | chr1_1:61925391-61925410 | Msa0034020:CDS | 50.0% |
| CATCTTGCTTGATCCGCCAA+TGG | - | chr1_1:61926055-61926074 | None:intergenic | 50.0% | |
| GCAAGATGTCTGTCGGATTC+TGG | + | chr1_1:61926067-61926086 | Msa0034020:CDS | 50.0% | |
| TGCCATGGCTTACCATCTAC+TGG | - | chr1_1:61926096-61926115 | None:intergenic | 50.0% | |
| GTAGATGGTAAGCCATGGCA+CGG | + | chr1_1:61926096-61926115 | Msa0034020:CDS | 50.0% | |
| GGTCCATGGAGCTGTGAAAC+CGG | + | chr1_1:61919259-61919278 | Msa0034020:CDS | 55.0% | |
| GTCCATGGAGCTGTGAAACC+GGG | + | chr1_1:61919260-61919279 | Msa0034020:CDS | 55.0% | |
| TGGTCGGGGAAACTCCTTAC+TGG | + | chr1_1:61919747-61919766 | Msa0034020:intron | 55.0% | |
| GGTCGGGGAAACTCCTTACT+GGG | + | chr1_1:61919748-61919767 | Msa0034020:intron | 55.0% | |
| AAGCGGGGAGACCTCATGAA+AGG | - | chr1_1:61919781-61919800 | None:intergenic | 55.0% | |
| GGTCTCGAGTTCGAGACTTG+TGG | - | chr1_1:61919821-61919840 | None:intergenic | 55.0% | |
| GAGATGTTGCGTCCTTCCTG+TGG | + | chr1_1:61919971-61919990 | Msa0034020:intron | 55.0% | |
| TACTGGGAGTCGGTAGCAAC+GGG | - | chr1_1:61920011-61920030 | None:intergenic | 55.0% | |
| TTTGGATGGTAGGGGACGAG+AGG | + | chr1_1:61920485-61920504 | Msa0034020:intron | 55.0% | |
| TTGGATGGTAGGGGACGAGA+GGG | + | chr1_1:61920486-61920505 | Msa0034020:intron | 55.0% | |
| ! | GTAGGGGACGAGAGGGTTTT+GGG | + | chr1_1:61920493-61920512 | Msa0034020:intron | 55.0% |
| !!! | ACGAGAGGGTTTTGGGTGGA+GGG | + | chr1_1:61920500-61920519 | Msa0034020:intron | 55.0% |
| TTTGGGAGGGGAGAGCTTTC+GGG | - | chr1_1:61920727-61920746 | None:intergenic | 55.0% | |
| GCTATTCCGGGACGGCTTTA+TGG | + | chr1_1:61921822-61921841 | Msa0034020:CDS | 55.0% | |
| ! | ATTCCGGGACGGCTTTATGG+CGG | + | chr1_1:61921825-61921844 | Msa0034020:CDS | 55.0% |
| GAGATGGAAATGGCGGTGAC+AGG | + | chr1_1:61921865-61921884 | Msa0034020:CDS | 55.0% | |
| !! | TTGGATGGCACTGGTCCTTC+AGG | + | chr1_1:61922053-61922072 | Msa0034020:CDS | 55.0% |
| TGGTGGAAACTCGGCTTAGG+TGG | + | chr1_1:61922659-61922678 | Msa0034020:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1_1:61922866-61922885 | Msa0034020:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1_1:61922867-61922886 | Msa0034020:intron | 55.0% | |
| !! | ACGACTGGAAAGGTGCTTGG+TGG | + | chr1_1:61924010-61924029 | Msa0034020:intron | 55.0% |
| CATCTTCCACCCCAGCAAAG+TGG | - | chr1_1:61924420-61924439 | None:intergenic | 55.0% | |
| CACACGAAGAGTCGGGTCCA+TGG | + | chr1_1:61919245-61919264 | Msa0034020:CDS | 60.0% | |
| GACCCGGTTTCACAGCTCCA+TGG | - | chr1_1:61919265-61919284 | None:intergenic | 60.0% | |
| GGGGAAACTCCTTACTGGGC+TGG | + | chr1_1:61919752-61919771 | Msa0034020:intron | 60.0% | |
| GAAAGGTGGCCAGCCCAGTA+AGG | - | chr1_1:61919764-61919783 | None:intergenic | 60.0% | |
| !! | TGGGCTGGCCACCTTTCATG+AGG | + | chr1_1:61919767-61919786 | Msa0034020:intron | 60.0% |
| CGGGGAGACCTCATGAAAGG+TGG | - | chr1_1:61919778-61919797 | None:intergenic | 60.0% | |
| ! | GGTAGGGGACGAGAGGGTTT+TGG | + | chr1_1:61920492-61920511 | Msa0034020:intron | 60.0% |
| !!! | GACGAGAGGGTTTTGGGTGG+AGG | + | chr1_1:61920499-61920518 | Msa0034020:intron | 60.0% |
| !!! | CGAGAGGGTTTTGGGTGGAG+GGG | + | chr1_1:61920501-61920520 | Msa0034020:intron | 60.0% |
| ! | TTCCGGGACGGCTTTATGGC+GGG | + | chr1_1:61921826-61921845 | Msa0034020:CDS | 60.0% |
| TTCCCGCCATAAAGCCGTCC+CGG | - | chr1_1:61921831-61921850 | None:intergenic | 60.0% | |
| !! | GGCACTGGTCCTTCAGGTTC+TGG | + | chr1_1:61922059-61922078 | Msa0034020:CDS | 60.0% |
| GGTAAGCCATGGCACGGTTC+CGG | + | chr1_1:61926102-61926121 | Msa0034020:CDS | 60.0% | |
| TAGTGTCCGGAACCGTGCCA+TGG | - | chr1_1:61926111-61926130 | None:intergenic | 60.0% | |
| !!! | GGGGACGAGAGGGTTTTGGG+TGG | + | chr1_1:61920496-61920515 | Msa0034020:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 61918802 | 61926609 | 61918802 | ID=Msa0034020;Name=Msa0034020 |
| chr1_1 | mRNA | 61918802 | 61926609 | 61918802 | ID=Msa0034020-mRNA-1;Parent=Msa0034020;Name=Msa0034020-mRNA-1;_AED=0.19;_eAED=0.19;_QI=382|0.83|1|1|1|1|7|268|342 |
| chr1_1 | exon | 61918802 | 61919441 | 61918802 | ID=Msa0034020-mRNA-1:exon:19422;Parent=Msa0034020-mRNA-1 |
| chr1_1 | exon | 61919523 | 61919590 | 61919523 | ID=Msa0034020-mRNA-1:exon:19423;Parent=Msa0034020-mRNA-1 |
| chr1_1 | exon | 61920370 | 61920436 | 61920370 | ID=Msa0034020-mRNA-1:exon:19424;Parent=Msa0034020-mRNA-1 |
| chr1_1 | exon | 61921732 | 61921886 | 61921732 | ID=Msa0034020-mRNA-1:exon:19425;Parent=Msa0034020-mRNA-1 |
| chr1_1 | exon | 61922004 | 61922080 | 61922004 | ID=Msa0034020-mRNA-1:exon:19426;Parent=Msa0034020-mRNA-1 |
| chr1_1 | exon | 61925327 | 61925427 | 61925327 | ID=Msa0034020-mRNA-1:exon:19427;Parent=Msa0034020-mRNA-1 |
| chr1_1 | exon | 61926039 | 61926609 | 61926039 | ID=Msa0034020-mRNA-1:exon:19428;Parent=Msa0034020-mRNA-1 |
| chr1_1 | five_prime_UTR | 61918802 | 61919183 | 61918802 | ID=Msa0034020-mRNA-1:five_prime_utr;Parent=Msa0034020-mRNA-1 |
| chr1_1 | CDS | 61919184 | 61919441 | 61919184 | ID=Msa0034020-mRNA-1:cds;Parent=Msa0034020-mRNA-1 |
| chr1_1 | CDS | 61919523 | 61919590 | 61919523 | ID=Msa0034020-mRNA-1:cds;Parent=Msa0034020-mRNA-1 |
| chr1_1 | CDS | 61920370 | 61920436 | 61920370 | ID=Msa0034020-mRNA-1:cds;Parent=Msa0034020-mRNA-1 |
| chr1_1 | CDS | 61921732 | 61921886 | 61921732 | ID=Msa0034020-mRNA-1:cds;Parent=Msa0034020-mRNA-1 |
| chr1_1 | CDS | 61922004 | 61922080 | 61922004 | ID=Msa0034020-mRNA-1:cds;Parent=Msa0034020-mRNA-1 |
| chr1_1 | CDS | 61925327 | 61925427 | 61925327 | ID=Msa0034020-mRNA-1:cds;Parent=Msa0034020-mRNA-1 |
| chr1_1 | CDS | 61926039 | 61926341 | 61926039 | ID=Msa0034020-mRNA-1:cds;Parent=Msa0034020-mRNA-1 |
| chr1_1 | three_prime_UTR | 61926342 | 61926609 | 61926342 | ID=Msa0034020-mRNA-1:three_prime_utr;Parent=Msa0034020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
