AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0853200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853200 MtrunA17_Chr5g0410791 96.620 355 12 0 1 355 1 355 0.0 671
Msa0853200 MtrunA17_Chr2g0289301 45.455 264 132 3 92 354 63 315 6.61e-67 213
Msa0853200 MtrunA17_Chr2g0289291 42.125 273 142 3 83 354 57 314 1.02e-59 195
Msa0853200 MtrunA17_Chr1g0202631 37.415 147 69 3 91 237 18 141 3.14e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853200 AT2G35490.1 62.102 314 91 6 52 355 80 375 1.31e-119 350
Msa0853200 AT4G04020.1 46.792 265 133 3 92 355 60 317 5.68e-79 244
Msa0853200 AT4G22240.1 48.207 251 126 3 107 355 61 309 1.11e-78 244

Find 143 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATATACCTTTCACATTT+TGG 0.071931 5_4:-44920211 None:intergenic
CAGAGCTTCTTAATGGAAAT+TGG 0.139850 5_4:+44916673 Msa0853200:CDS
GCTCTTGTTGATACGGTTTA+TGG 0.164801 5_4:+44916546 Msa0853200:CDS
TCAAGCTGTTGTGTATTTAA+AGG 0.171848 5_4:+44920255 Msa0853200:three_prime_UTR
TCTTTATCCTCCAAGGTTTC+AGG 0.177149 5_4:+44916372 Msa0853200:CDS
ATTATTTCACCAAGTTAATA+AGG 0.210201 5_4:-44920382 None:intergenic
GAAGAGAGAGAAGAAGGTTT+AGG 0.227490 5_4:-44916192 None:intergenic
AATAATAATATATATTGATT+TGG 0.232043 5_4:+44920399 Msa0853200:three_prime_UTR
GAGGCCCCAGGCTAAGATTT+TGG 0.241414 5_4:-44919887 None:intergenic
AAGAGAGAGAAGAAGGTTTA+GGG 0.248806 5_4:-44916191 None:intergenic
GAAAGTGAATCACCCAAATT+TGG 0.258440 5_4:-44916058 None:intergenic
TTTATATATAACAGAATTAC+AGG 0.284747 5_4:-44920339 None:intergenic
AGAAATGAAATGTGTATTAA+AGG 0.289832 5_4:-44916089 None:intergenic
GAGGAACCAGAGCTTCTTAA+TGG 0.294675 5_4:+44916666 Msa0853200:CDS
ATAATAATATATATTGATTT+GGG 0.311097 5_4:+44920400 Msa0853200:three_prime_UTR
TGAAATGACACGTGATATAT+TGG 0.313752 5_4:-44919946 None:intergenic
GATAAAGATGGTTTCGCTTC+GGG 0.325235 5_4:-44916357 None:intergenic
AATATATCACGTGTCATTTC+AGG 0.334503 5_4:+44919948 Msa0853200:CDS
ACTGAGCTTGGGTTTCGAGC+TGG 0.339922 5_4:+44916570 Msa0853200:CDS
CTGAGCTTGGGTTTCGAGCT+GGG 0.348135 5_4:+44916571 Msa0853200:CDS
CTCTTGTTGATACGGTTTAT+GGG 0.348147 5_4:+44916547 Msa0853200:CDS
TTTGGGTGGGCAGAGGGAAA+TGG 0.360329 5_4:-44920193 None:intergenic
GAGAATACCTGTATTCTTGC+AGG 0.368434 5_4:-44917778 None:intergenic
TTGGGTGGGCAGAGGGAAAT+GGG 0.375489 5_4:-44920192 None:intergenic
TTATTTCACCAAGTTAATAA+GGG 0.383282 5_4:-44920381 None:intergenic
AGCTATAGCGATGCTGGAAA+TGG 0.384313 5_4:+44916453 Msa0853200:CDS
ATCCTCCAAGGTTTCAGGTT+CGG 0.389859 5_4:+44916377 Msa0853200:CDS
GATGGTTTCGCTTCGGGTAC+GGG 0.390387 5_4:-44916351 None:intergenic
TCCTTCCTCCACCGGAGCTT+CGG 0.393349 5_4:-44916493 None:intergenic
CGGTTTATGGGACTGAGCTT+GGG 0.396439 5_4:+44916559 Msa0853200:CDS
AGAAGCTCTGGTTCCTCAAC+CGG 0.397078 5_4:-44916660 None:intergenic
ACCCCATTCATCGGAGATAT+CGG 0.397999 5_4:-44916316 None:intergenic
CACCGATATCTCCGATGAAT+GGG 0.399176 5_4:+44916314 Msa0853200:CDS
ACGGTTTATGGGACTGAGCT+TGG 0.399549 5_4:+44916558 Msa0853200:CDS
TTTCGCTTCGGGTACGGGTT+CGG 0.403541 5_4:-44916346 None:intergenic
AGATGGTTTCGCTTCGGGTA+CGG 0.404635 5_4:-44916352 None:intergenic
GAGTCCCCTTCTTGATTAGT+AGG 0.407924 5_4:+44920097 Msa0853200:exon
TTCGAAGAACGAGGATGAAT+GGG 0.414775 5_4:+44916404 Msa0853200:CDS
GCAACAGTCTCTCGGTCCTC+TGG 0.422110 5_4:+44919911 Msa0853200:CDS
GTCTCCGATGTCGCCGGCGG+CGG 0.422448 5_4:-44916277 None:intergenic
GTCGGAGTTCGTGGCTCAGC+TGG 0.423316 5_4:+44916614 Msa0853200:CDS
TCATTCCCTCCTTCCTCCAC+CGG 0.424459 5_4:-44916501 None:intergenic
TGGGTGGGCAGAGGGAAATG+GGG 0.428409 5_4:-44920191 None:intergenic
GCTTGTCCTCTCACCAGGTA+TGG 0.429636 5_4:-44919991 None:intergenic
GGATAAAGATGGTTTCGCTT+CGG 0.433399 5_4:-44916358 None:intergenic
CCACCGATATCTCCGATGAA+TGG 0.434882 5_4:+44916313 Msa0853200:CDS
CAATTTCCATTAAGAAGCTC+TGG 0.437020 5_4:-44916672 None:intergenic
GGGAGAGAAGAGAGAGAAGA+AGG 0.440214 5_4:-44916198 None:intergenic
CTTCGAAGAACGAGGATGAA+TGG 0.442545 5_4:+44916403 Msa0853200:CDS
CCCTACCGCTGCTCCGGTTG+AGG 0.446206 5_4:+44916647 Msa0853200:CDS
CTGAAAGATGATGAGGCAAA+AGG 0.448168 5_4:-44917727 None:intergenic
AGAGCTTCTTAATGGAAATT+GGG 0.453732 5_4:+44916674 Msa0853200:CDS
TCTTACCACATACCTTGATA+AGG 0.454052 5_4:+44920022 Msa0853200:CDS
TCGAAGCCCTGCAAGAATAC+AGG 0.454672 5_4:+44917771 Msa0853200:CDS
GTTCACAACAGTGGAGCTAT+AGG 0.458564 5_4:-44917686 None:intergenic
ATCTCCGCCGCCGGCGACAT+CGG 0.459218 5_4:+44916273 Msa0853200:CDS
AGCTGAGGTGTCGGAGTTCG+TGG 0.459710 5_4:+44916605 Msa0853200:CDS
AGCAGCAGGAGCATTACCTT+TGG 0.464327 5_4:+44917630 Msa0853200:CDS
GAAACGTGCTCTTGTTGATA+CGG 0.468444 5_4:+44916539 Msa0853200:CDS
GCGGAGATGAAGCGGAGAGA+AGG 0.473892 5_4:-44916258 None:intergenic
AGGAACCGAACCTGAAACCT+TGG 0.476928 5_4:-44916382 None:intergenic
TTCTAACCCTACCGCTGCTC+CGG 0.478623 5_4:+44916641 Msa0853200:CDS
GGGCCTCTGCAACAGTCTCT+CGG 0.479400 5_4:+44919903 Msa0853200:CDS
GCCGGGAGCTATAGCGATGC+TGG 0.479717 5_4:+44916447 Msa0853200:CDS
GGCTTCTGCTACCGAAGCTC+CGG 0.480527 5_4:+44916482 Msa0853200:CDS
GCTTGGGTTTCGAGCTGGGT+CGG 0.485721 5_4:+44916575 Msa0853200:CDS
CTCCGCTTCATCTCCGCCGC+CGG 0.492082 5_4:+44916264 Msa0853200:CDS
ATAAGGACTTGAGAATATCA+AGG 0.494892 5_4:+44920039 Msa0853200:CDS
TCCTCAACCGGAGCAGCGGT+AGG 0.508926 5_4:-44916648 None:intergenic
TTGTTTGTCCTTGCAAGAGA+AGG 0.509859 5_4:+44920074 Msa0853200:CDS
GGAGCTTCGGTAGCAGAAGC+CGG 0.511929 5_4:-44916480 None:intergenic
CATTCATCCTCGTTCTTCGA+AGG 0.514164 5_4:-44916402 None:intergenic
ATATTCTCAAGTCCTTATCA+AGG 0.517104 5_4:-44920034 None:intergenic
AGCATTACCTTTGGTGAAGG+TGG 0.517212 5_4:+44917639 Msa0853200:CDS
CCAGGTATGGGAATCTTAAG+AGG 0.518200 5_4:-44919978 None:intergenic
GAGACTGTTGCAGAGGCCCC+AGG 0.518219 5_4:-44919899 None:intergenic
CAAGAGCTTGTCCTCTCACC+AGG 0.518418 5_4:-44919996 None:intergenic
CTGTTGCCTCTTCTAGCAGC+AGG 0.518463 5_4:+44917616 Msa0853200:CDS
TGAAAGATGATGAGGCAAAA+GGG 0.519153 5_4:-44917726 None:intergenic
CGCCGGCGGCGGAGATGAAG+CGG 0.523679 5_4:-44916266 None:intergenic
TTTGGCCAAAATCTTAGCCT+GGG 0.525313 5_4:+44919882 Msa0853200:CDS
TACTTCCTACTAATCAAGAA+GGG 0.525799 5_4:-44920102 None:intergenic
CTTGTCCTCTCACCAGGTAT+GGG 0.526234 5_4:-44919990 None:intergenic
TGCTACCGAAGCTCCGGTGG+AGG 0.528076 5_4:+44916488 Msa0853200:CDS
GAAACCTTGGAGGATAAAGA+TGG 0.529624 5_4:-44916369 None:intergenic
CTGGTGAGAGGACAAGCTCT+TGG 0.530530 5_4:+44919997 Msa0853200:CDS
GTGGGCAGAGGGAAATGGGG+TGG 0.530810 5_4:-44920188 None:intergenic
GGATTTCTCACCCCATTCAT+CGG 0.532988 5_4:-44916325 None:intergenic
TGAAGCGGAGAGAAGGGAAT+CGG 0.540766 5_4:-44916251 None:intergenic
TGTTTGTCCTTGCAAGAGAA+GGG 0.542298 5_4:+44920075 Msa0853200:CDS
TTACTTCCTACTAATCAAGA+AGG 0.544198 5_4:-44920103 None:intergenic
ACCGAAGCTCCGGTGGAGGA+AGG 0.544424 5_4:+44916492 Msa0853200:CDS
AATCAGGTTACATTCAAAGA+AGG 0.544455 5_4:+44919801 Msa0853200:intron
CGGAGATGAAGCGGAGAGAA+GGG 0.544568 5_4:-44916257 None:intergenic
ATGTGTATTAAAGGAACTTG+TGG 0.554433 5_4:-44916080 None:intergenic
CCTCTTAAGATTCCCATACC+TGG 0.555697 5_4:+44919978 Msa0853200:CDS
TCCAGCATCGCTATAGCTCC+CGG 0.556872 5_4:-44916448 None:intergenic
AGAATACCTGTATTCTTGCA+GGG 0.561505 5_4:-44917777 None:intergenic
CAAGTCCTTATCAAGGTATG+TGG 0.561987 5_4:-44920027 None:intergenic
AACGAGGATGAATGGGGAGA+AGG 0.562177 5_4:+44916411 Msa0853200:CDS
AACCGAACCTGAAACCTTGG+AGG 0.564163 5_4:-44916379 None:intergenic
TGGGTCGGAGGTTCGAGCTG+AGG 0.566095 5_4:+44916590 Msa0853200:CDS
TTCTGCTACCGAAGCTCCGG+TGG 0.570205 5_4:+44916485 Msa0853200:CDS
GAAACCATCTTTATCCTCCA+AGG 0.571449 5_4:+44916365 Msa0853200:CDS
AGAGAAGAGACATGGCGAAA+CGG 0.572628 5_4:-44916131 None:intergenic
GATGAGAGGAACACGTAGTG+TGG 0.575131 5_4:-44916157 None:intergenic
AGGAGCATTACCTTTGGTGA+AGG 0.578672 5_4:+44917636 Msa0853200:CDS
TCTCGGTCCTCTGGAGAATG+TGG 0.579374 5_4:+44919920 Msa0853200:CDS
CGATGCTGGAAATGGAACTC+CGG 0.580650 5_4:+44916461 Msa0853200:CDS
GAAGCTCCGGTGGAGGAAGG+AGG 0.581497 5_4:+44916495 Msa0853200:CDS
TGGTTCCTCAACCGGAGCAG+CGG 0.582763 5_4:-44916652 None:intergenic
GGAGGTTCGAGCTGAGGTGT+CGG 0.585365 5_4:+44916596 Msa0853200:CDS
GGGGACTCCCTTCTCTTGCA+AGG 0.586669 5_4:-44920082 None:intergenic
CCTCAACCGGAGCAGCGGTA+GGG 0.586793 5_4:-44916647 None:intergenic
TTGAGAATATCAAGGGGAGA+TGG 0.587068 5_4:+44920047 Msa0853200:CDS
TATTTCACCAAGTTAATAAG+GGG 0.587871 5_4:-44920380 None:intergenic
GAAGGGAATCGGTGAGAGCG+AGG 0.590945 5_4:-44916240 None:intergenic
CTGCCCACCCAAAATGTGAA+AGG 0.591170 5_4:+44920203 Msa0853200:three_prime_UTR
ATCAGCGTCTCCGATGTCGC+CGG 0.594805 5_4:-44916283 None:intergenic
TAAGGACTTGAGAATATCAA+GGG 0.594956 5_4:+44920040 Msa0853200:CDS
TGGGTTTCGAGCTGGGTCGG+AGG 0.599924 5_4:+44916578 Msa0853200:CDS
AAGCTCCGGTGGAGGAAGGA+GGG 0.601932 5_4:+44916496 Msa0853200:CDS
GGACCGAGAGACTGTTGCAG+AGG 0.604038 5_4:-44919906 None:intergenic
AGGGCTTCGAACTTCAAATG+AGG 0.604253 5_4:-44917758 None:intergenic
TTGGCCAAAATCTTAGCCTG+GGG 0.612553 5_4:+44919883 Msa0853200:CDS
ATTACAGGTTTACAACACAT+AGG 0.614263 5_4:-44920324 None:intergenic
AATGCTCCTGCTGCTAGAAG+AGG 0.620670 5_4:-44917622 None:intergenic
AGCGTCTCCGATGTCGCCGG+CGG 0.622611 5_4:-44916280 None:intergenic
TTCGGTTCCTTCGAAGAACG+AGG 0.624221 5_4:+44916395 Msa0853200:CDS
ATTTCACCAAGTTAATAAGG+GGG 0.635957 5_4:-44920379 None:intergenic
TCATCGGAGATATCGGTGGA+TGG 0.639488 5_4:-44916309 None:intergenic
ACTTCCTACTAATCAAGAAG+GGG 0.640290 5_4:-44920101 None:intergenic
AGATGCACTGAAAGATGATG+AGG 0.643499 5_4:-44917734 None:intergenic
AGAATATCAAGGGGAGATGG+CGG 0.646369 5_4:+44920050 Msa0853200:CDS
AGATTCCCATACCTGGTGAG+AGG 0.651644 5_4:+44919985 Msa0853200:CDS
CCATTCATCGGAGATATCGG+TGG 0.655548 5_4:-44916313 None:intergenic
TGTGGAAGAGAGAAGAGACA+TGG 0.661649 5_4:-44916139 None:intergenic
TCGAAGAACGAGGATGAATG+GGG 0.664578 5_4:+44916405 Msa0853200:CDS
ACCGATATCTCCGATGAATG+GGG 0.667674 5_4:+44916315 Msa0853200:CDS
GAGGGAATGAAGAACTTGAG+CGG 0.679326 5_4:+44916514 Msa0853200:CDS
AAGGACTTGAGAATATCAAG+GGG 0.684464 5_4:+44920041 Msa0853200:CDS
TGTCACAGAGTTCACAACAG+TGG 0.699209 5_4:-44917695 None:intergenic
TTGGCAACCACATTCTCCAG+AGG 0.717434 5_4:-44919927 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACAAATTTTAATCATA+GGG + chr5_4:44916860-44916879 Msa0853200:intron 10.0%
!! TAAACTATTTATATTGTAAA+AGG + chr5_4:44917230-44917249 Msa0853200:intron 10.0%
!!! ATTTTTAATTTCTCCAAATT+TGG + chr5_4:44916045-44916064 Msa0853200:five_prime_UTR 15.0%
!!! TTTTTAATTTCTCCAAATTT+GGG + chr5_4:44916046-44916065 Msa0853200:five_prime_UTR 15.0%
!!! CTTTTACAAATTTTAATCAT+AGG + chr5_4:44916859-44916878 Msa0853200:intron 15.0%
!! TTCATTACTAAATTGAAAAA+AGG + chr5_4:44917817-44917836 Msa0853200:intron 15.0%
!!! ATTATTTTCTTAGATATGAT+AGG - chr5_4:44918187-44918206 None:intergenic 15.0%
!!! TTTTGTTATCTTGATTTTAT+GGG - chr5_4:44918393-44918412 None:intergenic 15.0%
!! CAAAACTGTAATATTATTTA+TGG + chr5_4:44918408-44918427 Msa0853200:intron 15.0%
!! TGTAATATTATTTATGGAAA+AGG + chr5_4:44918414-44918433 Msa0853200:intron 15.0%
!!! TAAATTAAGTTGATTTTTCA+CGG - chr5_4:44919353-44919372 None:intergenic 15.0%
!!! TATCTTTTCTTTTTTACATT+CGG + chr5_4:44920165-44920184 Msa0853200:three_prime_UTR 15.0%
!! TTTATATATAACAGAATTAC+AGG - chr5_4:44920342-44920361 None:intergenic 15.0%
!! AGAAATGAAATGTGTATTAA+AGG - chr5_4:44916092-44916111 None:intergenic 20.0%
!!! TGAAAGTATCTTTTTTATGT+TGG + chr5_4:44917121-44917140 Msa0853200:intron 20.0%
!!! GAAAGTATCTTTTTTATGTT+GGG + chr5_4:44917122-44917141 Msa0853200:intron 20.0%
!! TAAATTGAAAAAAGGCAAAA+AGG + chr5_4:44917825-44917844 Msa0853200:intron 20.0%
!!! GTTTTGTTATCTTGATTTTA+TGG - chr5_4:44918394-44918413 None:intergenic 20.0%
!!! TGGAATAGAGATTTTATTAA+CGG - chr5_4:44919037-44919056 None:intergenic 20.0%
!!! TTCTCCTTTTTATTTCTTTT+GGG - chr5_4:44919309-44919328 None:intergenic 20.0%
!!! AATGATTAACTTGTAACAAA+GGG - chr5_4:44919709-44919728 None:intergenic 20.0%
!!! TAATGATTAACTTGTAACAA+AGG - chr5_4:44919710-44919729 None:intergenic 20.0%
!!! AAAAAAAGAAAAAAGCACAT+AGG - chr5_4:44920289-44920308 None:intergenic 20.0%
!!! TGCTTTTTTCTTTTTTTGAA+CGG + chr5_4:44920292-44920311 Msa0853200:three_prime_UTR 20.0%
!! TTATTTCACCAAGTTAATAA+GGG - chr5_4:44920384-44920403 None:intergenic 20.0%
!! ATTATTTCACCAAGTTAATA+AGG - chr5_4:44920385-44920404 None:intergenic 20.0%
! ATAAGATGTTAACACAAACA+GGG - chr5_4:44917165-44917184 None:intergenic 25.0%
! AATAAGATGTTAACACAAAC+AGG - chr5_4:44917166-44917185 None:intergenic 25.0%
!! CAACTTATTGACAATGTTTT+AGG + chr5_4:44917337-44917356 Msa0853200:intron 25.0%
!! ATGTTTTCAATGCAAAGTAA+AGG - chr5_4:44917453-44917472 None:intergenic 25.0%
!! ATTTTGTATCTTAGAAACGA+AGG + chr5_4:44917478-44917497 Msa0853200:intron 25.0%
! AATTTAGTAATGAAATGCGA+AGG - chr5_4:44917811-44917830 None:intergenic 25.0%
! GATACTTATCTAATGAGAAA+AGG - chr5_4:44917945-44917964 None:intergenic 25.0%
! TAGTAAGTTACTGTGAAATA+TGG + chr5_4:44918019-44918038 Msa0853200:intron 25.0%
! TTAGATATGATAGGACATTA+AGG - chr5_4:44918178-44918197 None:intergenic 25.0%
! GTCTGAGTAGTTAATTTAAA+TGG - chr5_4:44918231-44918250 None:intergenic 25.0%
! ACATTCTGTTATAAAAGTGA+GGG - chr5_4:44918601-44918620 None:intergenic 25.0%
! AACATTCTGTTATAAAAGTG+AGG - chr5_4:44918602-44918621 None:intergenic 25.0%
! CTTAACAGCTTATTAACAAT+TGG - chr5_4:44919130-44919149 None:intergenic 25.0%
! TACACCCAAAAGAAATAAAA+AGG + chr5_4:44919302-44919321 Msa0853200:intron 25.0%
!!! CTTCTCCTTTTTATTTCTTT+TGG - chr5_4:44919310-44919329 None:intergenic 25.0%
! CAAAAGAAATAAAAAGGAGA+AGG + chr5_4:44919308-44919327 Msa0853200:intron 25.0%
!! AAATAAAAAGGAGAAGGTAT+AGG + chr5_4:44919314-44919333 Msa0853200:intron 25.0%
! ATACTAAGAAAACCATTTGT+CGG - chr5_4:44919440-44919459 None:intergenic 25.0%
! CTTAGTATTAAGCAATAAGA+TGG + chr5_4:44919452-44919471 Msa0853200:intron 25.0%
! TAACACTTCTAAATGAAATC+AGG + chr5_4:44919785-44919804 Msa0853200:intron 25.0%
!! TCAATTTTAGACTTTATCTC+TGG - chr5_4:44919840-44919859 None:intergenic 25.0%
!!! AAATGTTTATGTTTTCTGGT+AGG - chr5_4:44919863-44919882 None:intergenic 25.0%
!! CCAAAAATGTTTATGTTTTC+TGG - chr5_4:44919867-44919886 None:intergenic 25.0%
!! CCAGAAAACATAAACATTTT+TGG + chr5_4:44919864-44919883 Msa0853200:CDS 25.0%
!! TGATATACCTTTCACATTTT+GGG - chr5_4:44920213-44920232 None:intergenic 25.0%
!! TTGATATACCTTTCACATTT+TGG - chr5_4:44920214-44920233 None:intergenic 25.0%
! TATTTCACCAAGTTAATAAG+GGG - chr5_4:44920383-44920402 None:intergenic 25.0%
ATGTGTATTAAAGGAACTTG+TGG - chr5_4:44916083-44916102 None:intergenic 30.0%
ACGGTTGAAACTGAAAAATT+TGG - chr5_4:44916115-44916134 None:intergenic 30.0%
AGAGCTTCTTAATGGAAATT+GGG + chr5_4:44916674-44916693 Msa0853200:CDS 30.0%
AGTTTGATTGACATCATAGT+TGG + chr5_4:44916890-44916909 Msa0853200:intron 30.0%
GTTTGATTGACATCATAGTT+GGG + chr5_4:44916891-44916910 Msa0853200:intron 30.0%
! TACGTTTTATGAGACTGTTT+GGG - chr5_4:44917382-44917401 None:intergenic 30.0%
! ATACGTTTTATGAGACTGTT+TGG - chr5_4:44917383-44917402 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG - chr5_4:44917407-44917426 None:intergenic 30.0%
ACTTTGCATTGAAAACATAG+AGG + chr5_4:44917455-44917474 Msa0853200:intron 30.0%
! ATGATTGTCAAACTGATTTC+AGG + chr5_4:44917575-44917594 Msa0853200:intron 30.0%
TATCTAATGAGAAAAGGCTT+TGG - chr5_4:44917939-44917958 None:intergenic 30.0%
AATCACAACACAACATCAAT+TGG - chr5_4:44918056-44918075 None:intergenic 30.0%
TAAAAAAACCCTAGATGAGA+TGG + chr5_4:44918132-44918151 Msa0853200:intron 30.0%
AAAAAAACCCTAGATGAGAT+GGG + chr5_4:44918133-44918152 Msa0853200:intron 30.0%
CAATTTACAAAAGCCTTAGT+TGG + chr5_4:44918300-44918319 Msa0853200:intron 30.0%
TGAGAAATATTGTCAGAAGT+TGG - chr5_4:44918558-44918577 None:intergenic 30.0%
AGGGAAGAATTAGTTACAAT+TGG + chr5_4:44918821-44918840 Msa0853200:intron 30.0%
AGAATTAGTTACAATTGGTG+AGG + chr5_4:44918826-44918845 Msa0853200:intron 30.0%
TTGGTTAGGAAAATTATCTC+TGG + chr5_4:44918938-44918957 Msa0853200:intron 30.0%
TTAGGAAAATTATCTCTGGT+AGG + chr5_4:44918942-44918961 Msa0853200:intron 30.0%
GAAGAAAAGGAAATAACCAA+GGG - chr5_4:44918990-44919009 None:intergenic 30.0%
AGAAGAAAAGGAAATAACCA+AGG - chr5_4:44918991-44919010 None:intergenic 30.0%
AATAGCTCTTACAGAAGAAA+AGG - chr5_4:44919003-44919022 None:intergenic 30.0%
ACTGAGAATTCAAGTATCAA+TGG - chr5_4:44919057-44919076 None:intergenic 30.0%
TACTAAGAAAACCATTTGTC+GGG - chr5_4:44919439-44919458 None:intergenic 30.0%
AAAAACAATACTGTGAACTC+AGG - chr5_4:44919533-44919552 None:intergenic 30.0%
!! AAAAAGTTCTAAGCAAACTG+AGG - chr5_4:44919737-44919756 None:intergenic 30.0%
AATCAGGTTACATTCAAAGA+AGG + chr5_4:44919801-44919820 Msa0853200:intron 30.0%
! ATTTTAGACTTTATCTCTGG+AGG - chr5_4:44919837-44919856 None:intergenic 30.0%
TGAAATGACACGTGATATAT+TGG - chr5_4:44919949-44919968 None:intergenic 30.0%
!! AATATATCACGTGTCATTTC+AGG + chr5_4:44919948-44919967 Msa0853200:CDS 30.0%
ATATTCTCAAGTCCTTATCA+AGG - chr5_4:44920037-44920056 None:intergenic 30.0%
ATAAGGACTTGAGAATATCA+AGG + chr5_4:44920039-44920058 Msa0853200:CDS 30.0%
TAAGGACTTGAGAATATCAA+GGG + chr5_4:44920040-44920059 Msa0853200:CDS 30.0%
TACTTCCTACTAATCAAGAA+GGG - chr5_4:44920105-44920124 None:intergenic 30.0%
TTACTTCCTACTAATCAAGA+AGG - chr5_4:44920106-44920125 None:intergenic 30.0%
TCAAGCTGTTGTGTATTTAA+AGG + chr5_4:44920255-44920274 Msa0853200:three_prime_UTR 30.0%
ATTACAGGTTTACAACACAT+AGG - chr5_4:44920327-44920346 None:intergenic 30.0%
ATTTCACCAAGTTAATAAGG+GGG - chr5_4:44920382-44920401 None:intergenic 30.0%
GAAAGTGAATCACCCAAATT+TGG - chr5_4:44916061-44916080 None:intergenic 35.0%
AAGAGAGAGAAGAAGGTTTA+GGG - chr5_4:44916194-44916213 None:intergenic 35.0%
CTCTTGTTGATACGGTTTAT+GGG + chr5_4:44916547-44916566 Msa0853200:CDS 35.0%
CAATTTCCATTAAGAAGCTC+TGG - chr5_4:44916675-44916694 None:intergenic 35.0%
CAGAGCTTCTTAATGGAAAT+TGG + chr5_4:44916673-44916692 Msa0853200:CDS 35.0%
TATACTATGAAGCACAAGCA+CGG + chr5_4:44916928-44916947 Msa0853200:intron 35.0%
ACGTCACACTGATAATAAGT+TGG + chr5_4:44916971-44916990 Msa0853200:intron 35.0%
!! GTTGGGAGTATTTAGAACTT+AGG + chr5_4:44917139-44917158 Msa0853200:intron 35.0%
CAAAATAAGCCAATCCAAAC+AGG + chr5_4:44917427-44917446 Msa0853200:intron 35.0%
!!! AAACGAAGGTATTTTTGCCA+CGG + chr5_4:44917492-44917511 Msa0853200:intron 35.0%
!!! TTTTGAGTTAGTTACATCCG+TGG - chr5_4:44917512-44917531 None:intergenic 35.0%
! ATTTTATCCACCTTCACCAA+AGG - chr5_4:44917649-44917668 None:intergenic 35.0%
TGAAAGATGATGAGGCAAAA+GGG - chr5_4:44917729-44917748 None:intergenic 35.0%
AGAATACCTGTATTCTTGCA+GGG - chr5_4:44917780-44917799 None:intergenic 35.0%
AAAAAAAGAGCAAACCTCGT+AGG + chr5_4:44917873-44917892 Msa0853200:intron 35.0%
CACAATATCAAGGATTGTGA+CGG - chr5_4:44917982-44918001 None:intergenic 35.0%
TTGATGTTGTGTTGTGATTG+CGG + chr5_4:44918057-44918076 Msa0853200:intron 35.0%
TGAGAGTCTTAATCACTCTT+GGG - chr5_4:44918331-44918350 None:intergenic 35.0%
TTGAGAGTCTTAATCACTCT+TGG - chr5_4:44918332-44918351 None:intergenic 35.0%
! TCACTAAGTCTGAAGCTAAA+GGG - chr5_4:44918365-44918384 None:intergenic 35.0%
! ATCACTAAGTCTGAAGCTAA+AGG - chr5_4:44918366-44918385 None:intergenic 35.0%
CTGTTATAAAAGTGAGGGAA+AGG - chr5_4:44918596-44918615 None:intergenic 35.0%
TTAGTCCAGTAAGAGTTAGT+GGG - chr5_4:44918645-44918664 None:intergenic 35.0%
TTTCCAAATTGCTGACCTAT+GGG - chr5_4:44918772-44918791 None:intergenic 35.0%
! CAATTTGGAAAGTGTATGTC+AGG + chr5_4:44918781-44918800 Msa0853200:intron 35.0%
TGTATGTCAGGAAAAGGAAA+GGG + chr5_4:44918793-44918812 Msa0853200:intron 35.0%
ATTAGTTACAATTGGTGAGG+TGG + chr5_4:44918829-44918848 Msa0853200:intron 35.0%
! GAGAGAATCATTCATGCTTT+TGG + chr5_4:44918908-44918927 Msa0853200:intron 35.0%
!! TCATGCTTTTGGTGATTTGT+TGG + chr5_4:44918919-44918938 Msa0853200:intron 35.0%
!!! CTTTTGGTGATTTGTTGGTT+AGG + chr5_4:44918924-44918943 Msa0853200:intron 35.0%
CTATCACCTAGCAAGTTAAA+CGG + chr5_4:44919079-44919098 Msa0853200:intron 35.0%
! AGTTAAACGGTTGAGTTTTG+TGG + chr5_4:44919092-44919111 Msa0853200:intron 35.0%
!! GTTAAACGGTTGAGTTTTGT+GGG + chr5_4:44919093-44919112 Msa0853200:intron 35.0%
CAACACATACATATTGCTCA+AGG + chr5_4:44919170-44919189 Msa0853200:intron 35.0%
ACTAAGGTAGTATGTCAGTA+GGG - chr5_4:44919252-44919271 None:intergenic 35.0%
AACTAAGGTAGTATGTCAGT+AGG - chr5_4:44919253-44919272 None:intergenic 35.0%
ACAAACAGAAGAGCTTATGA+AGG - chr5_4:44919406-44919425 None:intergenic 35.0%
AAGAACAAATACAACGTGAC+TGG - chr5_4:44919599-44919618 None:intergenic 35.0%
TCTTACCACATACCTTGATA+AGG + chr5_4:44920022-44920041 Msa0853200:CDS 35.0%
AAGGACTTGAGAATATCAAG+GGG + chr5_4:44920041-44920060 Msa0853200:CDS 35.0%
ACTTCCTACTAATCAAGAAG+GGG - chr5_4:44920104-44920123 None:intergenic 35.0%
!! ATACCTTTCACATTTTGGGT+GGG - chr5_4:44920209-44920228 None:intergenic 35.0%
! TATACCTTTCACATTTTGGG+TGG - chr5_4:44920210-44920229 None:intergenic 35.0%
GAAGAGAGAGAAGAAGGTTT+AGG - chr5_4:44916195-44916214 None:intergenic 40.0%
GATAAAGATGGTTTCGCTTC+GGG - chr5_4:44916360-44916379 None:intergenic 40.0%
GGATAAAGATGGTTTCGCTT+CGG - chr5_4:44916361-44916380 None:intergenic 40.0%
GAAACCATCTTTATCCTCCA+AGG + chr5_4:44916365-44916384 Msa0853200:CDS 40.0%
GAAACCTTGGAGGATAAAGA+TGG - chr5_4:44916372-44916391 None:intergenic 40.0%
TCTTTATCCTCCAAGGTTTC+AGG + chr5_4:44916372-44916391 Msa0853200:CDS 40.0%
TTCGAAGAACGAGGATGAAT+GGG + chr5_4:44916404-44916423 Msa0853200:CDS 40.0%
GAAACGTGCTCTTGTTGATA+CGG + chr5_4:44916539-44916558 Msa0853200:CDS 40.0%
GCTCTTGTTGATACGGTTTA+TGG + chr5_4:44916546-44916565 Msa0853200:CDS 40.0%
!! GCTGTTTTCACAAGCTATCT+TGG + chr5_4:44917289-44917308 Msa0853200:intron 40.0%
AAGTAAAGGCCTGTTTGGAT+TGG - chr5_4:44917439-44917458 None:intergenic 40.0%
ATGCAAAGTAAAGGCCTGTT+TGG - chr5_4:44917444-44917463 None:intergenic 40.0%
CTGAAAGATGATGAGGCAAA+AGG - chr5_4:44917730-44917749 None:intergenic 40.0%
AGATGCACTGAAAGATGATG+AGG - chr5_4:44917737-44917756 None:intergenic 40.0%
GAGAATACCTGTATTCTTGC+AGG - chr5_4:44917781-44917800 None:intergenic 40.0%
! TTCTAGCTGTCATGTGAAAG+AGG + chr5_4:44917848-44917867 Msa0853200:intron 40.0%
! TATTTTGCCTTTCACCTACG+AGG - chr5_4:44917890-44917909 None:intergenic 40.0%
CGTCACAATCCTTGATATTG+TGG + chr5_4:44917980-44917999 Msa0853200:intron 40.0%
TGCAACTCTCCACAATATCA+AGG - chr5_4:44917992-44918011 None:intergenic 40.0%
CGTATAACCCATCTCATCTA+GGG - chr5_4:44918143-44918162 None:intergenic 40.0%
TCGTATAACCCATCTCATCT+AGG - chr5_4:44918144-44918163 None:intergenic 40.0%
ATGGAAAAGGTTGAGCACAA+AGG + chr5_4:44918427-44918446 Msa0853200:intron 40.0%
ATATCCCCACTAACTCTTAC+TGG + chr5_4:44918637-44918656 Msa0853200:intron 40.0%
TAGTCCAGTAAGAGTTAGTG+GGG - chr5_4:44918644-44918663 None:intergenic 40.0%
CTTAGTCCAGTAAGAGTTAG+TGG - chr5_4:44918646-44918665 None:intergenic 40.0%
CACTAACTCTTACTGGACTA+AGG + chr5_4:44918644-44918663 Msa0853200:intron 40.0%
! GTTGATAGGACTCTGTGTTT+GGG - chr5_4:44918670-44918689 None:intergenic 40.0%
! TGTTGATAGGACTCTGTGTT+TGG - chr5_4:44918671-44918690 None:intergenic 40.0%
AACACAGAGTCCTATCAACA+TGG + chr5_4:44918671-44918690 Msa0853200:intron 40.0%
!! GGAGTATTGATAGGACTTGT+GGG + chr5_4:44918709-44918728 Msa0853200:intron 40.0%
TTCCAAATTGCTGACCTATG+GGG - chr5_4:44918771-44918790 None:intergenic 40.0%
CTTTCCAAATTGCTGACCTA+TGG - chr5_4:44918773-44918792 None:intergenic 40.0%
! GGAAAGTGTATGTCAGGAAA+AGG + chr5_4:44918787-44918806 Msa0853200:intron 40.0%
GTGTATGTCAGGAAAAGGAA+AGG + chr5_4:44918792-44918811 Msa0853200:intron 40.0%
GTATGTCAGGAAAAGGAAAG+GGG + chr5_4:44918794-44918813 Msa0853200:intron 40.0%
TATGTCAGGAAAAGGAAAGG+GGG + chr5_4:44918795-44918814 Msa0853200:intron 40.0%
AGGTGGTAGGAATATTCTCT+AGG + chr5_4:44918846-44918865 Msa0853200:intron 40.0%
TGGTAGGAATATTCTCTAGG+TGG + chr5_4:44918849-44918868 Msa0853200:intron 40.0%
!! ACTCAACCGTTTAACTTGCT+AGG - chr5_4:44919088-44919107 None:intergenic 40.0%
! CATATTGCTCAAGGTACTAC+TGG + chr5_4:44919179-44919198 Msa0853200:intron 40.0%
! CTGGTTTGCATCTTTCTGAA+AGG + chr5_4:44919198-44919217 Msa0853200:intron 40.0%
AAGGCACAACTAAGGAACTA+AGG - chr5_4:44919268-44919287 None:intergenic 40.0%
TAGTTCCTTAGTTGTGCCTT+TGG + chr5_4:44919268-44919287 Msa0853200:intron 40.0%
AGTTCCTTAGTTGTGCCTTT+GGG + chr5_4:44919269-44919288 Msa0853200:intron 40.0%
ATATTTGCATGACAGAGCAG+CGG - chr5_4:44919639-44919658 None:intergenic 40.0%
! TTTTGGCCAAAATCTTAGCC+TGG + chr5_4:44919881-44919900 Msa0853200:CDS 40.0%
TTTGGCCAAAATCTTAGCCT+GGG + chr5_4:44919882-44919901 Msa0853200:CDS 40.0%
CAAGTCCTTATCAAGGTATG+TGG - chr5_4:44920030-44920049 None:intergenic 40.0%
TTGAGAATATCAAGGGGAGA+TGG + chr5_4:44920047-44920066 Msa0853200:CDS 40.0%
TTGTTTGTCCTTGCAAGAGA+AGG + chr5_4:44920074-44920093 Msa0853200:CDS 40.0%
TGTTTGTCCTTGCAAGAGAA+GGG + chr5_4:44920075-44920094 Msa0853200:CDS 40.0%
TGTTCACCCCCTTATTAACT+TGG + chr5_4:44920373-44920392 Msa0853200:three_prime_UTR 40.0%
AGAGAAGAGACATGGCGAAA+CGG - chr5_4:44916134-44916153 None:intergenic 45.0%
TGTGGAAGAGAGAAGAGACA+TGG - chr5_4:44916142-44916161 None:intergenic 45.0%
!!! GGGTTTTGAGAGAAGATGAG+AGG - chr5_4:44916174-44916193 None:intergenic 45.0%
CACCGATATCTCCGATGAAT+GGG + chr5_4:44916314-44916333 Msa0853200:CDS 45.0%
ACCGATATCTCCGATGAATG+GGG + chr5_4:44916315-44916334 Msa0853200:CDS 45.0%
ACCCCATTCATCGGAGATAT+CGG - chr5_4:44916319-44916338 None:intergenic 45.0%
GGATTTCTCACCCCATTCAT+CGG - chr5_4:44916328-44916347 None:intergenic 45.0%
!! ATCCTCCAAGGTTTCAGGTT+CGG + chr5_4:44916377-44916396 Msa0853200:CDS 45.0%
CATTCATCCTCGTTCTTCGA+AGG - chr5_4:44916405-44916424 None:intergenic 45.0%
CTTCGAAGAACGAGGATGAA+TGG + chr5_4:44916403-44916422 Msa0853200:CDS 45.0%
TCGAAGAACGAGGATGAATG+GGG + chr5_4:44916405-44916424 Msa0853200:CDS 45.0%
AGCTATAGCGATGCTGGAAA+TGG + chr5_4:44916453-44916472 Msa0853200:CDS 45.0%
GAGGGAATGAAGAACTTGAG+CGG + chr5_4:44916514-44916533 Msa0853200:CDS 45.0%
GAGGAACCAGAGCTTCTTAA+TGG + chr5_4:44916666-44916685 Msa0853200:CDS 45.0%
AGAGTCTGACACGACACATT+TGG - chr5_4:44917033-44917052 None:intergenic 45.0%
!! AGGAGCATTACCTTTGGTGA+AGG + chr5_4:44917636-44917655 Msa0853200:CDS 45.0%
AGCATTACCTTTGGTGAAGG+TGG + chr5_4:44917639-44917658 Msa0853200:CDS 45.0%
GTTCACAACAGTGGAGCTAT+AGG - chr5_4:44917689-44917708 None:intergenic 45.0%
TGTCACAGAGTTCACAACAG+TGG - chr5_4:44917698-44917717 None:intergenic 45.0%
AGGGCTTCGAACTTCAAATG+AGG - chr5_4:44917761-44917780 None:intergenic 45.0%
ATGTTGTGTTGTGATTGCGG+AGG + chr5_4:44918060-44918079 Msa0853200:intron 45.0%
GCACAAAGGCTCTACAATGA+TGG + chr5_4:44918441-44918460 Msa0853200:intron 45.0%
AGTGTTCACACTTCACACTC+TGG - chr5_4:44918491-44918510 None:intergenic 45.0%
!! TAGAAGCATTGTGCTCTGGT+AGG - chr5_4:44918514-44918533 None:intergenic 45.0%
!! TGGTTAGAAGCATTGTGCTC+TGG - chr5_4:44918518-44918537 None:intergenic 45.0%
AGCACAATGCTTCTAACCAG+AGG + chr5_4:44918519-44918538 Msa0853200:intron 45.0%
GCACAATGCTTCTAACCAGA+GGG + chr5_4:44918520-44918539 Msa0853200:intron 45.0%
TGGTTAGTAGAGTTTCCCTC+TGG - chr5_4:44918538-44918557 None:intergenic 45.0%
TCACAAGCAGCCATGTTGAT+AGG - chr5_4:44918684-44918703 None:intergenic 45.0%
ATCAACATGGCTGCTTGTGA+CGG + chr5_4:44918684-44918703 Msa0853200:intron 45.0%
!! GGGAGTATTGATAGGACTTG+TGG + chr5_4:44918708-44918727 Msa0853200:intron 45.0%
TCCAAATTGCTGACCTATGG+GGG - chr5_4:44918770-44918789 None:intergenic 45.0%
GTTACAATTGGTGAGGTGGT+AGG + chr5_4:44918833-44918852 Msa0853200:intron 45.0%
TTATCTCTGGTAGGAGCCAT+AGG + chr5_4:44918951-44918970 Msa0853200:intron 45.0%
GGGAAAATATCCAGAGCCTA+TGG - chr5_4:44918970-44918989 None:intergenic 45.0%
!!! AGGCTCTGGATATTTTCCCT+TGG + chr5_4:44918971-44918990 Msa0853200:intron 45.0%
! TGTTGTTGTTCAGACGAGAC+AGG - chr5_4:44919155-44919174 None:intergenic 45.0%
GTGTAGTCAAAGATGCCCAA+AGG - chr5_4:44919287-44919306 None:intergenic 45.0%
TGTCGTGAAAACCCGACAAA+TGG + chr5_4:44919425-44919444 Msa0853200:intron 45.0%
TATTTGCATGACAGAGCAGC+GGG - chr5_4:44919638-44919657 None:intergenic 45.0%
TTGGCCAAAATCTTAGCCTG+GGG + chr5_4:44919883-44919902 Msa0853200:CDS 45.0%
CCAGGTATGGGAATCTTAAG+AGG - chr5_4:44919981-44920000 None:intergenic 45.0%
CCTCTTAAGATTCCCATACC+TGG + chr5_4:44919978-44919997 Msa0853200:CDS 45.0%
AGAATATCAAGGGGAGATGG+CGG + chr5_4:44920050-44920069 Msa0853200:CDS 45.0%
GAGTCCCCTTCTTGATTAGT+AGG + chr5_4:44920097-44920116 Msa0853200:exon 45.0%
!!! AATAATAATATATATTGATT+TGG + chr5_4:44920399-44920418 Msa0853200:three_prime_UTR 5.0%
GATGAGAGGAACACGTAGTG+TGG - chr5_4:44916160-44916179 None:intergenic 50.0%
GGGAGAGAAGAGAGAGAAGA+AGG - chr5_4:44916201-44916220 None:intergenic 50.0%
GAGAGAGAGAGATTCGAGAG+GGG - chr5_4:44916221-44916240 None:intergenic 50.0%
GGAGAGAGAGAGATTCGAGA+GGG - chr5_4:44916222-44916241 None:intergenic 50.0%
AGGAGAGAGAGAGATTCGAG+AGG - chr5_4:44916223-44916242 None:intergenic 50.0%
TGAAGCGGAGAGAAGGGAAT+CGG - chr5_4:44916254-44916273 None:intergenic 50.0%
TCATCGGAGATATCGGTGGA+TGG - chr5_4:44916312-44916331 None:intergenic 50.0%
CCATTCATCGGAGATATCGG+TGG - chr5_4:44916316-44916335 None:intergenic 50.0%
CCACCGATATCTCCGATGAA+TGG + chr5_4:44916313-44916332 Msa0853200:CDS 50.0%
AGATGGTTTCGCTTCGGGTA+CGG - chr5_4:44916355-44916374 None:intergenic 50.0%
AACCGAACCTGAAACCTTGG+AGG - chr5_4:44916382-44916401 None:intergenic 50.0%
AGGAACCGAACCTGAAACCT+TGG - chr5_4:44916385-44916404 None:intergenic 50.0%
TTCGGTTCCTTCGAAGAACG+AGG + chr5_4:44916395-44916414 Msa0853200:CDS 50.0%
AACGAGGATGAATGGGGAGA+AGG + chr5_4:44916411-44916430 Msa0853200:CDS 50.0%
GAAGGAGCGAAAAATGACGC+CGG + chr5_4:44916429-44916448 Msa0853200:CDS 50.0%
AAGGAGCGAAAAATGACGCC+GGG + chr5_4:44916430-44916449 Msa0853200:CDS 50.0%
CGATGCTGGAAATGGAACTC+CGG + chr5_4:44916461-44916480 Msa0853200:CDS 50.0%
ACGGTTTATGGGACTGAGCT+TGG + chr5_4:44916558-44916577 Msa0853200:CDS 50.0%
CGGTTTATGGGACTGAGCTT+GGG + chr5_4:44916559-44916578 Msa0853200:CDS 50.0%
! AGAAGCTCTGGTTCCTCAAC+CGG - chr5_4:44916663-44916682 None:intergenic 50.0%
TGAAGCACAAGCACGGATAC+CGG + chr5_4:44916935-44916954 Msa0853200:intron 50.0%
! ACACTCCACATTGAAGGCGT+GGG - chr5_4:44917074-44917093 None:intergenic 50.0%
! GCACTGACACTCCACATTGA+AGG - chr5_4:44917080-44917099 None:intergenic 50.0%
AATGCTCCTGCTGCTAGAAG+AGG - chr5_4:44917625-44917644 None:intergenic 50.0%
!! AGCAGCAGGAGCATTACCTT+TGG + chr5_4:44917630-44917649 Msa0853200:CDS 50.0%
TCGAAGCCCTGCAAGAATAC+AGG + chr5_4:44917771-44917790 Msa0853200:CDS 50.0%
GAGCAAACCTCGTAGGTGAA+AGG + chr5_4:44917880-44917899 Msa0853200:intron 50.0%
CACAAAGAGCCATGATGTCG+TGG + chr5_4:44918083-44918102 Msa0853200:intron 50.0%
CAAGTGAAGCCACGACATCA+TGG - chr5_4:44918095-44918114 None:intergenic 50.0%
GTGGCTTCACTTGCAGTTGT+GGG + chr5_4:44918102-44918121 Msa0853200:intron 50.0%
CTCTTGGGAGCAACCAACTA+AGG - chr5_4:44918316-44918335 None:intergenic 50.0%
!! GTGACGGAGGGAGTATTGAT+AGG + chr5_4:44918700-44918719 Msa0853200:intron 50.0%
GGTCAACACCAGTATCCACA+TGG - chr5_4:44918749-44918768 None:intergenic 50.0%
!! ATACTGGTGTTGACCCCCAT+AGG + chr5_4:44918754-44918773 Msa0853200:intron 50.0%
ACCCCCATAGGTCAGCAATT+TGG + chr5_4:44918766-44918785 Msa0853200:intron 50.0%
! GATGCCCAAAGGCACAACTA+AGG - chr5_4:44919276-44919295 None:intergenic 50.0%
TTGGCAACCACATTCTCCAG+AGG - chr5_4:44919930-44919949 None:intergenic 50.0%
AGATTCCCATACCTGGTGAG+AGG + chr5_4:44919985-44920004 Msa0853200:CDS 50.0%
CTTGTCCTCTCACCAGGTAT+GGG - chr5_4:44919993-44920012 None:intergenic 50.0%
!! TCACATTTTGGGTGGGCAGA+GGG - chr5_4:44920202-44920221 None:intergenic 50.0%
!! TTCACATTTTGGGTGGGCAG+AGG - chr5_4:44920203-44920222 None:intergenic 50.0%
CTGCCCACCCAAAATGTGAA+AGG + chr5_4:44920203-44920222 Msa0853200:three_prime_UTR 50.0%
CGGAGATGAAGCGGAGAGAA+GGG - chr5_4:44916260-44916279 None:intergenic 55.0%
TTTCGCTTCGGGTACGGGTT+CGG - chr5_4:44916349-44916368 None:intergenic 55.0%
GATGGTTTCGCTTCGGGTAC+GGG - chr5_4:44916354-44916373 None:intergenic 55.0%
TCCAGCATCGCTATAGCTCC+CGG - chr5_4:44916451-44916470 None:intergenic 55.0%
TCATTCCCTCCTTCCTCCAC+CGG - chr5_4:44916504-44916523 None:intergenic 55.0%
ACTGAGCTTGGGTTTCGAGC+TGG + chr5_4:44916570-44916589 Msa0853200:CDS 55.0%
CTGAGCTTGGGTTTCGAGCT+GGG + chr5_4:44916571-44916590 Msa0853200:CDS 55.0%
TTCTAACCCTACCGCTGCTC+CGG + chr5_4:44916641-44916660 Msa0853200:CDS 55.0%
ACAAGCACGGATACCGGACA+GGG + chr5_4:44916941-44916960 Msa0853200:intron 55.0%
TGACGTCTCAATGCCCTGTC+CGG - chr5_4:44916957-44916976 None:intergenic 55.0%
GACACTCCACATTGAAGGCG+TGG - chr5_4:44917075-44917094 None:intergenic 55.0%
CTGTTGCCTCTTCTAGCAGC+AGG + chr5_4:44917616-44917635 Msa0853200:CDS 55.0%
CGTGGCTTCACTTGCAGTTG+TGG + chr5_4:44918101-44918120 Msa0853200:intron 55.0%
AACATGGCTGCTTGTGACGG+AGG + chr5_4:44918687-44918706 Msa0853200:intron 55.0%
! ACATGGCTGCTTGTGACGGA+GGG + chr5_4:44918688-44918707 Msa0853200:intron 55.0%
TCCACATGGAAGCCTGGATC+AGG - chr5_4:44918735-44918754 None:intergenic 55.0%
CCAGTATCCACATGGAAGCC+TGG - chr5_4:44918741-44918760 None:intergenic 55.0%
CCAGGCTTCCATGTGGATAC+TGG + chr5_4:44918738-44918757 Msa0853200:intron 55.0%
! AGGAAAAGGAAAGGGGGTGC+AGG + chr5_4:44918801-44918820 Msa0853200:intron 55.0%
! GGAAAAGGAAAGGGGGTGCA+GGG + chr5_4:44918802-44918821 Msa0853200:intron 55.0%
! GAGGCCCCAGGCTAAGATTT+TGG - chr5_4:44919890-44919909 None:intergenic 55.0%
! TCTCGGTCCTCTGGAGAATG+TGG + chr5_4:44919920-44919939 Msa0853200:CDS 55.0%
GCTTGTCCTCTCACCAGGTA+TGG - chr5_4:44919994-44920013 None:intergenic 55.0%
CAAGAGCTTGTCCTCTCACC+AGG - chr5_4:44919999-44920018 None:intergenic 55.0%
CTGGTGAGAGGACAAGCTCT+TGG + chr5_4:44919997-44920016 Msa0853200:CDS 55.0%
TTGGGTGGGCAGAGGGAAAT+GGG - chr5_4:44920195-44920214 None:intergenic 55.0%
TTTGGGTGGGCAGAGGGAAA+TGG - chr5_4:44920196-44920215 None:intergenic 55.0%
GAAGGGAATCGGTGAGAGCG+AGG - chr5_4:44916243-44916262 None:intergenic 60.0%
GCGGAGATGAAGCGGAGAGA+AGG - chr5_4:44916261-44916280 None:intergenic 60.0%
ATCAGCGTCTCCGATGTCGC+CGG - chr5_4:44916286-44916305 None:intergenic 60.0%
GGAGCTTCGGTAGCAGAAGC+CGG - chr5_4:44916483-44916502 None:intergenic 60.0%
GGCTTCTGCTACCGAAGCTC+CGG + chr5_4:44916482-44916501 Msa0853200:CDS 60.0%
TTCTGCTACCGAAGCTCCGG+TGG + chr5_4:44916485-44916504 Msa0853200:CDS 60.0%
TCCTTCCTCCACCGGAGCTT+CGG - chr5_4:44916496-44916515 None:intergenic 60.0%
AAGCTCCGGTGGAGGAAGGA+GGG + chr5_4:44916496-44916515 Msa0853200:CDS 60.0%
GCTTGGGTTTCGAGCTGGGT+CGG + chr5_4:44916575-44916594 Msa0853200:CDS 60.0%
GGAGGTTCGAGCTGAGGTGT+CGG + chr5_4:44916596-44916615 Msa0853200:CDS 60.0%
!! AGCTGAGGTGTCGGAGTTCG+TGG + chr5_4:44916605-44916624 Msa0853200:CDS 60.0%
TGGTTCCTCAACCGGAGCAG+CGG - chr5_4:44916655-44916674 None:intergenic 60.0%
CACAAGCACGGATACCGGAC+AGG + chr5_4:44916940-44916959 Msa0853200:intron 60.0%
CAGCACCCACGCCTTCAATG+TGG + chr5_4:44917066-44917085 Msa0853200:intron 60.0%
AGGACTTGTGGGCCTGATCC+AGG + chr5_4:44918720-44918739 Msa0853200:intron 60.0%
GCCTGATCCAGGCTTCCATG+TGG + chr5_4:44918731-44918750 Msa0853200:intron 60.0%
CTGGTAGGAGCCATAGGCTC+TGG + chr5_4:44918957-44918976 Msa0853200:intron 60.0%
GGGCCTCTGCAACAGTCTCT+CGG + chr5_4:44919903-44919922 Msa0853200:CDS 60.0%
GGACCGAGAGACTGTTGCAG+AGG - chr5_4:44919909-44919928 None:intergenic 60.0%
GCAACAGTCTCTCGGTCCTC+TGG + chr5_4:44919911-44919930 Msa0853200:CDS 60.0%
GGGGACTCCCTTCTCTTGCA+AGG - chr5_4:44920085-44920104 None:intergenic 60.0%
TGGGTGGGCAGAGGGAAATG+GGG - chr5_4:44920194-44920213 None:intergenic 60.0%
GCCGGGAGCTATAGCGATGC+TGG + chr5_4:44916447-44916466 Msa0853200:CDS 65.0%
TGCTACCGAAGCTCCGGTGG+AGG + chr5_4:44916488-44916507 Msa0853200:CDS 65.0%
ACCGAAGCTCCGGTGGAGGA+AGG + chr5_4:44916492-44916511 Msa0853200:CDS 65.0%
GAAGCTCCGGTGGAGGAAGG+AGG + chr5_4:44916495-44916514 Msa0853200:CDS 65.0%
TGGGTTTCGAGCTGGGTCGG+AGG + chr5_4:44916578-44916597 Msa0853200:CDS 65.0%
TGGGTCGGAGGTTCGAGCTG+AGG + chr5_4:44916590-44916609 Msa0853200:CDS 65.0%
GTCGGAGTTCGTGGCTCAGC+TGG + chr5_4:44916614-44916633 Msa0853200:CDS 65.0%
CCTCAACCGGAGCAGCGGTA+GGG - chr5_4:44916650-44916669 None:intergenic 65.0%
TCCTCAACCGGAGCAGCGGT+AGG - chr5_4:44916651-44916670 None:intergenic 65.0%
! GCGTGGGTGCTGTCAGACAC+GGG - chr5_4:44917058-44917077 None:intergenic 65.0%
! GGCGTGGGTGCTGTCAGACA+CGG - chr5_4:44917059-44917078 None:intergenic 65.0%
GAGACTGTTGCAGAGGCCCC+AGG - chr5_4:44919902-44919921 None:intergenic 65.0%
GTGGGCAGAGGGAAATGGGG+TGG - chr5_4:44920191-44920210 None:intergenic 65.0%
CTCCGCTTCATCTCCGCCGC+CGG + chr5_4:44916264-44916283 Msa0853200:CDS 70.0%
ATCTCCGCCGCCGGCGACAT+CGG + chr5_4:44916273-44916292 Msa0853200:CDS 70.0%
AGCGTCTCCGATGTCGCCGG+CGG - chr5_4:44916283-44916302 None:intergenic 70.0%
CCCTACCGCTGCTCCGGTTG+AGG + chr5_4:44916647-44916666 Msa0853200:CDS 70.0%
CGCCGGCGGCGGAGATGAAG+CGG - chr5_4:44916269-44916288 None:intergenic 75.0%
GTCTCCGATGTCGCCGGCGG+CGG - chr5_4:44916280-44916299 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 44916038 44920422 44916038 ID=Msa0853200;Name=Msa0853200
chr5_4 mRNA 44916038 44920422 44916038 ID=Msa0853200-mRNA-1;Parent=Msa0853200;Name=Msa0853200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=103|1|1|1|0.5|1|3|307|355
chr5_4 exon 44916038 44916703 44916038 ID=Msa0853200-mRNA-1:exon:14163;Parent=Msa0853200-mRNA-1
chr5_4 exon 44917597 44917792 44917597 ID=Msa0853200-mRNA-1:exon:14164;Parent=Msa0853200-mRNA-1
chr5_4 exon 44919807 44920422 44919807 ID=Msa0853200-mRNA-1:exon:14165;Parent=Msa0853200-mRNA-1
chr5_4 five_prime_UTR 44916038 44916140 44916038 ID=Msa0853200-mRNA-1:five_prime_utr;Parent=Msa0853200-mRNA-1
chr5_4 CDS 44916141 44916703 44916141 ID=Msa0853200-mRNA-1:cds;Parent=Msa0853200-mRNA-1
chr5_4 CDS 44917597 44917792 44917597 ID=Msa0853200-mRNA-1:cds;Parent=Msa0853200-mRNA-1
chr5_4 CDS 44919807 44920115 44919807 ID=Msa0853200-mRNA-1:cds;Parent=Msa0853200-mRNA-1
chr5_4 three_prime_UTR 44920116 44920422 44920116 ID=Msa0853200-mRNA-1:three_prime_utr;Parent=Msa0853200-mRNA-1
Gene Sequence

>Msa0853200

ATGTCTCTTCTCTCTTCCACACTACGTGTTCCTCTCATCTTCTCTCAAAACCCTAAACCTTCTTCTCTCTCTTCTCTCCCCTCTCGAATCTCTCTCTCTCCTCGCTCTCACCGATTCCCTTCTCTCCGCTTCATCTCCGCCGCCGGCGACATCGGAGACGCTGATATACCATCCACCGATATCTCCGATGAATGGGGTGAGAAATCCGAACCCGTACCCGAAGCGAAACCATCTTTATCCTCCAAGGTTTCAGGTTCGGTTCCTTCGAAGAACGAGGATGAATGGGGAGAAGGAGCGAAAAATGACGCCGGGAGCTATAGCGATGCTGGAAATGGAACTCCGGCTTCTGCTACCGAAGCTCCGGTGGAGGAAGGAGGGAATGAAGAACTTGAGCGGTTGAAACGTGCTCTTGTTGATACGGTTTATGGGACTGAGCTTGGGTTTCGAGCTGGGTCGGAGGTTCGAGCTGAGGTGTCGGAGTTCGTGGCTCAGCTGGAAGCTTCTAACCCTACCGCTGCTCCGGTTGAGGAACCAGAGCTTCTTAATGGAAATTGGGTGTTGCTGTACACAGCATCTTCTGAACTGTTGCCTCTTCTAGCAGCAGGAGCATTACCTTTGGTGAAGGTGGATAAAATCTTGCAAACAATTGATACCTATAGCTCCACTGTTGTGAACTCTGTGACATTGTCTAGCCCTTTTGCCTCATCATCTTTCAGTGCATCTGCCTCATTTGAAGTTCGAAGCCCTGCAAGAATACAGGTTACATTCAAAGAAGGATCACTACAGCCTCCAGAGATAAAGTCTAAAATTGACCTACCAGAAAACATAAACATTTTTGGCCAAAATCTTAGCCTGGGGCCTCTGCAACAGTCTCTCGGTCCTCTGGAGAATGTGGTTGCCAATATATCACGTGTCATTTCAGGTCAGTCACCTCTTAAGATTCCCATACCTGGTGAGAGGACAAGCTCTTGGCTTCTTACCACATACCTTGATAAGGACTTGAGAATATCAAGGGGAGATGGCGGTTTGTTTGTCCTTGCAAGAGAAGGGAGTCCCCTTCTTGATTAG

Protein sequence

>Msa0853200

MSLLSSTLRVPLIFSQNPKPSSLSSLPSRISLSPRSHRFPSLRFISAAGDIGDADIPSTDISDEWGEKSEPVPEAKPSLSSKVSGSVPSKNEDEWGEGAKNDAGSYSDAGNGTPASATEAPVEEGGNEELERLKRALVDTVYGTELGFRAGSEVRAEVSEFVAQLEASNPTAAPVEEPELLNGNWVLLYTASSELLPLLAAGALPLVKVDKILQTIDTYSSTVVNSVTLSSPFASSSFSASASFEVRSPARIQVTFKEGSLQPPEIKSKIDLPENINIFGQNLSLGPLQQSLGPLENVVANISRVISGQSPLKIPIPGERTSSWLLTTYLDKDLRISRGDGGLFVLAREGSPLLD*