AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034990 MtrunA17_Chr1g0197331 99.130 115 1 0 1 115 1 115 5.07e-79 232
Msa0034990 MtrunA17_Chr7g0265001 74.528 106 26 1 12 117 13 117 2.65e-53 166
Msa0034990 MtrunA17_Chr8g0384311 69.231 117 32 2 1 117 1 113 1.72e-51 162
Msa0034990 MtrunA17_Chr1g0180291 74.528 106 25 1 12 117 11 114 4.26e-51 161
Msa0034990 MtrunA17_Chr1g0159481 69.159 107 31 1 11 117 13 117 2.47e-49 156
Msa0034990 MtrunA17_Chr3g0130271 69.444 108 31 1 10 117 7 112 3.01e-49 156
Msa0034990 MtrunA17_Chr4g0055651 61.111 108 40 2 9 116 2 107 1.87e-38 128
Msa0034990 MtrunA17_Chr7g0250531 60.185 108 41 2 9 116 2 107 1.29e-37 126
Msa0034990 MtrunA17_Chr8g0335471 60.185 108 41 2 9 116 2 107 1.36e-37 126
Msa0034990 MtrunA17_Chr2g0276931 57.658 111 43 3 7 116 1 108 1.15e-34 119
Msa0034990 MtrunA17_Chr1g0182321 51.724 116 54 2 1 116 1 114 7.02e-34 117
Msa0034990 MtrunA17_Chr1g0182301 51.724 116 54 2 1 116 1 114 7.49e-34 117
Msa0034990 MtrunA17_Chr2g0276941 52.174 115 53 2 1 115 1 113 1.18e-32 114
Msa0034990 MtrunA17_Chr1g0212521 54.717 106 46 2 11 116 11 114 1.50e-32 114
Msa0034990 MtrunA17_Chr2g0319951 54.630 108 47 2 8 115 6 111 1.55e-32 114
Msa0034990 MtrunA17_Chr4g0030911 54.717 106 46 2 11 116 11 114 1.84e-32 113
Msa0034990 MtrunA17_Chr2g0283131 55.556 108 46 2 8 115 6 111 2.09e-32 113
Msa0034990 MtrunA17_Chr7g0263071 54.717 106 46 2 11 116 11 114 2.20e-32 113
Msa0034990 MtrunA17_Chr4g0046261 55.556 108 46 2 8 115 6 111 2.71e-32 113
Msa0034990 MtrunA17_Chr4g0040781 55.556 108 46 2 8 115 6 111 4.36e-32 112
Msa0034990 MtrunA17_Chr2g0315551 53.704 108 48 2 8 115 6 111 2.06e-31 111
Msa0034990 MtrunA17_Chr8g0392931 52.336 107 49 2 9 115 8 112 5.94e-31 110
Msa0034990 MtrunA17_Chr3g0112681 48.800 125 57 4 6 126 4 125 6.17e-31 109
Msa0034990 MtrunA17_Chr8g0381841 50.427 117 54 3 1 115 1 115 1.20e-30 109
Msa0034990 MtrunA17_Chr4g0032201 47.541 122 58 3 9 126 6 125 1.21e-30 108
Msa0034990 MtrunA17_Chr2g0325091 54.206 107 47 2 9 115 5 109 3.93e-30 107
Msa0034990 MtrunA17_Chr6g0458081 52.830 106 46 3 11 115 2 104 5.32e-30 107
Msa0034990 MtrunA17_Chr1g0174281 45.968 124 61 3 9 128 9 130 5.90e-30 107
Msa0034990 MtrunA17_Chr6g0482721 52.336 107 49 2 9 115 6 110 1.14e-29 106
Msa0034990 MtrunA17_Chr7g0231131 45.968 124 61 3 9 128 9 130 1.78e-29 106
Msa0034990 MtrunA17_Chr3g0123821 49.074 108 53 2 8 115 9 114 2.14e-29 106
Msa0034990 MtrunA17_Chr2g0290891 52.830 106 46 3 11 115 2 104 2.33e-29 105
Msa0034990 MtrunA17_Chr1g0189361 50.467 107 43 3 13 115 12 112 2.87e-29 105
Msa0034990 MtrunA17_Chr2g0327911 50.000 106 51 2 11 116 11 114 3.96e-29 105
Msa0034990 MtrunA17_Chr8g0349711 52.427 103 45 3 14 115 5 104 5.46e-29 104
Msa0034990 MtrunA17_Chr7g0275991 51.456 103 48 2 13 115 18 118 8.73e-29 104
Msa0034990 MtrunA17_Chr8g0349681 54.286 105 44 3 12 115 381 482 2.33e-28 108
Msa0034990 MtrunA17_Chr8g0349681 51.456 103 46 3 14 115 12 111 1.30e-25 100
Msa0034990 MtrunA17_Chr8g0349681 48.598 107 53 2 9 115 169 273 2.42e-25 99.8
Msa0034990 MtrunA17_Chr7g0214241 47.059 119 57 3 14 128 14 130 2.37e-28 103
Msa0034990 MtrunA17_Chr8g0346421 50.485 103 49 2 13 115 24 124 7.64e-28 102
Msa0034990 MtrunA17_Chr8g0351861 50.485 103 49 2 13 115 14 114 2.82e-27 100
Msa0034990 MtrunA17_Chr7g0234201 46.667 120 56 4 14 128 12 128 3.50e-26 97.8
Msa0034990 MtrunA17_Chr1g0201121 46.465 99 51 2 16 114 9 105 4.49e-22 86.7
Msa0034990 MtrunA17_Chr4g0034871 45.455 99 52 2 16 114 9 105 4.94e-22 86.7
Msa0034990 MtrunA17_Chr2g0331691 45.455 99 52 2 16 114 11 107 5.04e-22 86.7
Msa0034990 MtrunA17_Chr5g0433561 40.000 110 62 3 7 116 4 109 2.68e-21 84.7
Msa0034990 MtrunA17_Chr6g0466301 45.455 99 52 2 16 114 9 105 3.79e-21 84.3
Msa0034990 MtrunA17_Chr6g0465491 45.455 99 52 2 16 114 9 105 3.79e-21 84.3
Msa0034990 MtrunA17_Chr4g0004661 45.918 98 51 2 17 114 66 161 3.79e-21 85.5
Msa0034990 MtrunA17_Chr8g0383261 47.826 92 47 1 16 107 13 103 5.60e-21 84.0
Msa0034990 MtrunA17_Chr3g0109721 38.182 110 64 3 7 116 4 109 3.61e-20 81.6
Msa0034990 MtrunA17_Chr4g0055081 41.000 100 57 2 16 115 10 107 8.39e-20 80.9
Msa0034990 MtrunA17_Chr5g0400131 41.000 100 57 2 16 115 10 107 1.15e-19 80.5
Msa0034990 MtrunA17_Chr3g0123971 40.000 100 58 2 16 115 10 107 3.91e-19 79.0
Msa0034990 MtrunA17_Chr8g0382221 40.000 100 58 2 16 115 10 107 4.11e-19 79.0
Msa0034990 MtrunA17_Chr8g0390561 38.000 100 60 2 17 116 11 108 5.77e-18 75.9
Msa0034990 MtrunA17_Chr1g0199331 39.091 110 62 4 8 115 24 130 4.30e-17 73.6
Msa0034990 MtrunA17_Chr3g0138121 34.615 104 65 3 13 115 10 111 7.64e-14 65.5
Msa0034990 MtrunA17_Chr3g0138101 34.615 104 65 3 13 115 10 111 7.64e-14 65.5
Msa0034990 MtrunA17_Chr3g0138111 34.615 104 65 3 13 115 10 111 7.80e-14 65.5
Msa0034990 MtrunA17_Chr6g0466431 37.374 99 51 2 16 114 9 96 2.04e-13 61.6
Msa0034990 MtrunA17_Chr6g0465611 37.374 99 51 2 16 114 9 96 2.04e-13 61.6
Msa0034990 MtrunA17_Chr6g0466161 46.875 64 33 1 48 111 22 84 1.16e-11 59.3
Msa0034990 MtrunA17_Chr6g0465471 46.875 64 33 1 48 111 22 84 1.20e-11 59.3
Msa0034990 MtrunA17_Chr8g0383221 32.174 115 63 3 17 118 23 135 1.20e-11 60.5
Msa0034990 MtrunA17_Chr6g0486041 31.481 108 71 3 17 123 8 113 3.10e-11 58.2
Msa0034990 MtrunA17_Chr2g0325101 30.556 108 72 3 17 123 8 113 4.61e-11 57.8
Msa0034990 MtrunA17_Chr8g0371501 30.556 108 72 3 17 123 8 113 7.91e-11 57.0
Msa0034990 MtrunA17_Chr4g0037021 30.556 108 72 3 17 123 8 113 9.72e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034990 AT5G03530.2 75.214 117 25 2 1 117 1 113 1.96e-57 177
Msa0034990 AT5G03530.1 75.214 117 25 2 1 117 1 113 1.96e-57 177
Msa0034990 AT1G43890.3 73.504 117 27 2 1 117 1 113 1.03e-55 173
Msa0034990 AT1G43890.1 73.504 117 27 2 1 117 1 113 1.03e-55 173
Msa0034990 AT1G43890.2 73.504 117 27 2 1 117 1 113 1.03e-55 173
Msa0034990 AT3G09910.5 67.521 117 34 2 1 117 1 113 2.37e-44 144
Msa0034990 AT3G09910.4 67.521 117 34 2 1 117 1 113 2.37e-44 144
Msa0034990 AT3G09910.3 67.521 117 34 2 1 117 1 113 2.66e-44 144
Msa0034990 AT3G09910.1 67.521 117 34 2 1 117 1 113 2.66e-44 144
Msa0034990 AT3G09910.2 67.521 117 34 2 1 117 1 113 2.66e-44 144
Msa0034990 AT1G02130.1 60.185 108 41 2 9 116 2 107 3.05e-37 125
Msa0034990 AT5G47200.1 60.185 108 41 2 9 116 2 107 7.47e-37 125
Msa0034990 AT4G17530.1 60.185 108 41 2 9 116 2 107 8.99e-37 124
Msa0034990 AT3G11730.1 58.333 108 43 2 9 116 2 107 1.12e-35 122
Msa0034990 AT5G45750.1 56.481 108 45 2 8 115 6 111 9.38e-34 117
Msa0034990 AT5G59840.1 54.717 106 46 2 11 116 11 114 2.11e-32 114
Msa0034990 AT3G53610.2 54.717 106 46 2 11 116 11 114 2.17e-32 114
Msa0034990 AT3G53610.3 54.717 106 46 2 11 116 11 114 2.17e-32 114
Msa0034990 AT3G53610.1 54.717 106 46 2 11 116 11 114 2.17e-32 114
Msa0034990 AT5G03520.1 52.586 116 53 2 1 116 1 114 2.22e-32 114
Msa0034990 AT3G09900.1 52.586 116 53 2 1 116 1 114 2.52e-32 114
Msa0034990 AT3G46060.2 54.717 106 46 2 11 116 11 114 3.01e-32 113
Msa0034990 AT3G46060.3 54.717 106 46 2 11 116 11 114 3.01e-32 113
Msa0034990 AT3G46060.1 54.717 106 46 2 11 116 11 114 3.01e-32 113
Msa0034990 AT4G18800.1 53.704 108 48 2 8 115 6 111 3.59e-32 113
Msa0034990 AT5G60860.1 55.556 108 46 2 8 115 6 111 7.39e-32 112
Msa0034990 AT1G16920.1 56.190 105 44 2 11 115 9 111 1.16e-31 112
Msa0034990 AT1G18200.1 55.340 103 44 2 13 115 11 111 1.23e-31 112
Msa0034990 AT3G12160.1 46.774 124 60 3 9 128 9 130 1.26e-30 109
Msa0034990 AT2G33870.1 54.630 108 47 2 8 115 6 111 1.35e-30 109
Msa0034990 AT1G07410.1 46.721 122 59 3 9 126 6 125 2.10e-30 108
Msa0034990 AT3G15060.1 52.778 108 49 2 8 115 6 111 2.40e-30 108
Msa0034990 AT4G39990.1 52.427 103 47 2 13 115 15 115 3.20e-30 108
Msa0034990 AT4G17160.1 54.717 106 44 3 11 115 2 104 3.35e-30 108
Msa0034990 AT1G73640.1 55.789 95 41 1 13 107 11 104 3.78e-30 108
Msa0034990 AT1G09630.1 52.336 107 49 2 9 115 6 110 4.74e-30 107
Msa0034990 AT3G46830.1 46.721 122 59 3 9 126 6 125 7.14e-30 107
Msa0034990 AT3G46830.2 46.721 122 59 3 9 126 6 125 7.14e-30 107
Msa0034990 AT5G59150.1 45.902 122 60 3 9 126 6 125 7.53e-30 107
Msa0034990 AT1G06400.1 46.400 125 61 3 8 128 6 128 1.02e-29 107
Msa0034990 AT1G28550.1 53.704 108 48 2 8 115 6 111 1.08e-29 107
Msa0034990 AT4G18430.1 50.926 108 51 2 8 115 6 111 1.11e-29 107
Msa0034990 AT5G47960.1 50.467 107 51 2 9 115 9 113 1.62e-29 106
Msa0034990 AT4G35860.1 51.887 106 47 3 11 115 2 104 2.98e-29 105
Msa0034990 AT4G17170.1 52.830 106 46 3 11 115 2 104 3.74e-29 105
Msa0034990 AT5G65270.1 51.456 103 48 2 13 115 15 115 6.51e-29 105
Msa0034990 AT5G47520.1 50.467 107 43 3 13 115 12 112 7.04e-29 105
Msa0034990 AT1G05810.1 46.667 120 58 3 13 128 10 127 5.29e-28 102
Msa0034990 AT1G05810.2 46.667 120 58 3 13 128 56 173 9.44e-28 103
Msa0034990 AT2G43130.1 48.148 108 46 3 13 116 10 111 3.67e-27 100
Msa0034990 AT2G31680.1 45.000 120 60 3 13 128 10 127 4.39e-27 100
Msa0034990 AT1G01200.1 49.515 103 50 2 13 115 26 126 3.72e-26 98.6
Msa0034990 AT3G07410.1 47.009 117 55 4 1 116 1 111 2.55e-25 95.9
Msa0034990 AT4G09720.1 47.475 99 50 2 16 114 9 105 5.78e-23 89.4
Msa0034990 AT4G09720.3 47.475 99 50 2 16 114 9 105 7.68e-23 89.4
Msa0034990 AT4G09720.4 47.475 99 50 2 16 114 9 105 7.71e-23 89.4
Msa0034990 AT1G52280.1 47.475 99 50 2 16 114 9 105 1.21e-22 88.6
Msa0034990 AT1G22740.1 46.465 99 51 2 16 114 9 105 2.35e-22 87.8
Msa0034990 AT3G18820.1 45.455 99 52 2 16 114 9 105 4.04e-22 87.4
Msa0034990 AT3G16100.1 46.465 99 51 2 16 114 9 105 1.49e-21 85.9
Msa0034990 AT1G49300.2 44.444 99 53 2 16 114 9 105 2.56e-21 85.1
Msa0034990 AT1G49300.1 44.444 99 53 2 16 114 9 105 2.56e-21 85.1
Msa0034990 AT4G39890.1 41.000 100 57 2 16 115 10 107 1.63e-20 83.2
Msa0034990 AT2G21880.1 44.444 99 53 2 16 114 10 106 3.96e-20 82.0
Msa0034990 AT5G03520.2 52.778 72 33 1 45 116 34 104 1.31e-19 80.9
Msa0034990 AT4G19640.2 37.736 106 64 2 11 116 6 109 1.66e-19 79.0
Msa0034990 AT5G45130.1 37.931 116 65 4 1 116 1 109 1.81e-19 80.1
Msa0034990 AT4G19640.1 37.736 106 64 2 11 116 6 109 3.42e-19 79.3
Msa0034990 AT4G19640.3 39.000 100 59 2 17 116 12 109 6.07e-19 78.6
Msa0034990 AT2G44610.1 40.000 100 58 2 16 115 10 107 9.94e-19 78.6
Msa0034990 AT5G10260.1 39.000 100 59 2 16 115 10 107 3.91e-18 77.0
Msa0034990 AT5G45130.2 37.755 98 59 2 19 116 22 117 5.70e-18 76.6
Msa0034990 AT2G22290.1 40.000 100 58 2 16 115 10 107 8.02e-18 76.3
Msa0034990 AT5G64990.1 39.000 100 59 2 16 115 8 105 8.30e-18 75.9
Msa0034990 AT5G39620.1 43.000 100 53 3 16 114 6 102 1.07e-17 75.9
Msa0034990 AT3G54840.1 42.574 101 53 4 17 115 35 132 7.82e-17 73.6
Msa0034990 AT3G54840.2 42.574 101 53 4 17 115 35 132 8.47e-17 73.2
Msa0034990 AT3G54840.3 41.584 101 54 4 18 116 2 99 2.56e-16 71.2
Msa0034990 AT4G09720.6 52.239 67 31 1 48 114 6 71 7.95e-16 70.1
Msa0034990 AT4G09720.5 52.239 67 31 1 48 114 6 71 7.95e-16 70.1
Msa0034990 AT4G09720.2 52.239 67 31 1 48 114 6 71 7.95e-16 70.1
Msa0034990 AT4G35860.2 54.386 57 25 1 59 115 3 58 3.37e-15 68.2
Msa0034990 AT5G64990.2 36.449 107 59 3 16 115 8 112 4.18e-15 68.9
Msa0034990 AT5G59150.2 45.714 70 33 2 63 128 8 76 5.20e-14 65.1
Msa0034990 AT2G21880.4 49.254 67 33 1 48 114 16 81 5.29e-14 65.5
Msa0034990 AT2G21880.3 49.254 67 33 1 48 114 16 81 5.29e-14 65.5
Msa0034990 AT5G20020.1 34.615 104 65 3 13 115 10 111 1.10e-13 65.5
Msa0034990 AT5G55190.1 34.615 104 65 3 13 115 10 111 1.12e-13 65.5
Msa0034990 AT5G20010.1 34.615 104 65 3 13 115 10 111 1.25e-13 65.1
Msa0034990 AT2G44690.1 35.185 108 67 3 17 123 20 125 1.31e-13 65.1
Msa0034990 AT5G55080.1 30.693 101 68 2 15 115 13 111 3.17e-13 64.3
Msa0034990 AT5G09910.1 34.483 116 61 3 16 118 23 136 6.76e-13 64.3
Msa0034990 AT5G09910.4 34.483 116 61 3 16 118 23 136 6.76e-13 64.3
Msa0034990 AT3G48040.2 31.481 108 71 3 17 123 10 115 1.91e-11 58.9
Msa0034990 AT3G48040.1 31.481 108 71 3 17 123 10 115 2.43e-11 58.9
Msa0034990 AT4G35020.4 29.915 117 76 3 17 129 8 122 5.38e-11 57.0
Msa0034990 AT4G35020.5 29.915 117 76 3 17 129 8 122 5.38e-11 57.0
Msa0034990 AT4G28950.1 30.275 109 73 3 16 123 7 113 7.38e-11 57.8
Msa0034990 AT5G62880.2 30.556 108 72 3 17 123 10 115 9.90e-11 57.0

Find 47 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGATTGAAGCTTACTATT+TGG 0.159285 1_1:-62983065 Msa0034990:CDS
TCAAATTCTTGTTGGCAATA+AGG 0.261502 1_1:-62980782 Msa0034990:exon
AAGATTGAAGCTTACTATTT+GGG 0.304127 1_1:-62983064 Msa0034990:CDS
CGTCCAGGCGGTTGAGAGTT+TGG 0.328951 1_1:+62984052 None:intergenic
GATGACCTTTCTCCCACTAT+TGG 0.342365 1_1:-62983766 Msa0034990:intron
CATTTCACCCTTTATGATCA+TGG 0.351737 1_1:-62983969 Msa0034990:five_prime_UTR
TTTGATGCAATCTTGATTAG+TGG 0.356660 1_1:+62980800 Msa0034980:intron
TCATGGCCAAATGATTCATT+AGG 0.367086 1_1:-62983952 Msa0034990:five_prime_UTR
TCATTTGGCCATGATCATAA+AGG 0.377860 1_1:+62983961 None:intergenic
ACCAATCCTAATGAATCATT+TGG 0.383302 1_1:+62983946 None:intergenic
ATGGGTTCTTCTTCAAAAGT+TGG 0.386734 1_1:-62983892 Msa0034990:CDS
TAAGGTAAATATTAGGTCTA+TGG 0.389211 1_1:-62980755 Msa0034990:three_prime_UTR
GGCGCACATGGAATCGTTCT+TGG 0.394093 1_1:-62981191 Msa0034990:intron
ATGATTCATTAGGATTGGTT+TGG 0.394356 1_1:-62983942 Msa0034990:five_prime_UTR
TGTTGGCAATAAGGTGGATA+AGG 0.416713 1_1:-62980773 Msa0034990:exon
GCAGCTGGACAAGAGAGGTT+TGG 0.417511 1_1:-62981239 Msa0034990:intron
GCCAAATGATTCATTAGGAT+TGG 0.425604 1_1:-62983947 Msa0034990:five_prime_UTR
TTGATTGGTGATTCTGGTGT+TGG 0.435841 1_1:-62983835 Msa0034990:CDS
AGGTGGATAAGGTAAATATT+AGG 0.442122 1_1:-62980762 Msa0034990:three_prime_UTR
AGATTGCATCAAATTCTTGT+TGG 0.461575 1_1:-62980790 Msa0034990:CDS
CTTGCATTCATTACTTACTC+AGG 0.466010 1_1:-62980727 Msa0034990:three_prime_UTR
ACCAAGCAAGCTGATTTCCT+TGG 0.468615 1_1:-62984076 None:intergenic
GAAGGTAAGGTTGTCCGTCC+AGG 0.480146 1_1:+62984037 None:intergenic
GAGAACCAATAGTGGGAGAA+AGG 0.483210 1_1:+62983761 None:intergenic
CATTTGGCCATGATCATAAA+GGG 0.488183 1_1:+62983962 None:intergenic
TTACAAACCTGGTGGGAACA+TGG 0.492228 1_1:-62980844 Msa0034990:CDS
AGAAAGAAAGCAAAGTAAGA+AGG 0.492318 1_1:+62983992 None:intergenic
GAAGAGAAGAGAACCAATAG+TGG 0.493822 1_1:+62983753 None:intergenic
GGGAGAAAACATAATCTGTA+TGG 0.498102 1_1:+62980691 Msa0034980:intron
AAAATGAGACAAAGAAGGTA+AGG 0.523000 1_1:+62984024 None:intergenic
GGTGGGAACATGGGCAAAAG+AGG 0.525668 1_1:-62980834 Msa0034990:CDS
GGACCAAACTCTCAACCGCC+TGG 0.549618 1_1:-62984055 Msa0034990:five_prime_UTR
TACAAACCTGGTGGGAACAT+GGG 0.559570 1_1:-62980843 Msa0034990:CDS
AAGCTTACTATTTGGGACAC+AGG 0.560298 1_1:-62983057 Msa0034990:intron
ACAAGAAAATGAGACAAAGA+AGG 0.568313 1_1:+62984019 None:intergenic
AATTCTTGTTGGCAATAAGG+TGG 0.578639 1_1:-62980779 Msa0034990:exon
TCTTATTACAGAGGCGCACA+TGG 0.580596 1_1:-62981203 Msa0034990:CDS
GTAAATATTAGGTCTATGGT+AGG 0.580673 1_1:-62980751 Msa0034990:three_prime_UTR
CAAACTCTCAACCGCCTGGA+CGG 0.584661 1_1:-62984051 Msa0034990:five_prime_UTR
GCGAGAGACATTTACAAACC+TGG 0.589818 1_1:-62980855 Msa0034990:CDS
AAGAGAAGAGAACCAATAGT+GGG 0.590629 1_1:+62983754 None:intergenic
GCGGTTGAGAGTTTGGTCCA+AGG 0.618670 1_1:+62984059 None:intergenic
ATTTAGTGTATGATGTAACA+AGG 0.660740 1_1:-62980877 Msa0034990:intron
GGTAAGGTTGTCCGTCCAGG+CGG 0.673872 1_1:+62984040 None:intergenic
GTGATATGCTCTTATTACAG+AGG 0.674573 1_1:-62981212 Msa0034990:CDS
GAGACATTTACAAACCTGGT+GGG 0.674869 1_1:-62980851 Msa0034990:CDS
AGAGACATTTACAAACCTGG+TGG 0.692793 1_1:-62980852 Msa0034990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAACATGAAAAATAAT+TGG - chr1_1:62981313-62981332 Msa0034990:intron 10.0%
!! AAAAAGAATACTAAATACAT+GGG - chr1_1:62980851-62980870 Msa0034990:CDS 15.0%
!! AACTAGAAAGAAAAAATAAA+AGG + chr1_1:62981037-62981056 Msa0034980:intron 15.0%
!!! ATTTTATGTTTTCAAGATTT+TGG + chr1_1:62981298-62981317 Msa0034980:intron 15.0%
!!! TTTAACTTCTCTATTATAAT+AGG - chr1_1:62981524-62981543 Msa0034990:intron 15.0%
!! TTAACTTCTCTATTATAATA+GGG - chr1_1:62981525-62981544 Msa0034990:intron 15.0%
!!! TAAAACACATTATATTTTTG+TGG + chr1_1:62981947-62981966 None:intergenic 15.0%
!! AATTATATTTCCAAATATGA+TGG - chr1_1:62982539-62982558 Msa0034990:intron 15.0%
!! GAAAAAGAATACTAAATACA+TGG - chr1_1:62980850-62980869 Msa0034990:CDS 20.0%
!!! TAACTATGATTACTCTTTTA+AGG - chr1_1:62980898-62980917 Msa0034990:intron 20.0%
!!! TTTCTTGATTCATTTTGATT+TGG - chr1_1:62981103-62981122 Msa0034990:intron 20.0%
!! AAGTATCATAAAATATGACA+AGG + chr1_1:62981132-62981151 Msa0034980:intron 20.0%
!!! TTTTACATTACATACTGAAA+TGG - chr1_1:62981445-62981464 Msa0034990:intron 20.0%
!!! TTTTTGATAAGTTGATATCT+AGG - chr1_1:62981476-62981495 Msa0034990:intron 20.0%
!! TTAAAAACTATGAATGAAGA+AGG + chr1_1:62981509-62981528 Msa0034980:intron 20.0%
!!! GGTATTTGTTTTTGAAATTT+TGG - chr1_1:62981567-62981586 Msa0034990:intron 20.0%
!!! AAAATCAAGCATTTTACAAT+TGG - chr1_1:62981668-62981687 Msa0034990:intron 20.0%
!!! TATATTTTTGTGGTTGTTTA+TGG + chr1_1:62981937-62981956 None:intergenic 20.0%
!! TGATGAATAAATTCATTCAT+TGG - chr1_1:62982133-62982152 Msa0034990:intron 20.0%
!! TGTAACATGAAAAATATGTA+AGG - chr1_1:62982835-62982854 Msa0034990:intron 20.0%
!!! TCTATCAGTTTAAAATATGA+TGG + chr1_1:62983250-62983269 None:intergenic 20.0%
!!! TCTTTTAAGGTTTTGTTGAT+TGG - chr1_1:62980911-62980930 Msa0034990:intron 25.0%
!!! TATGTTTTCAAGATTTTGTG+AGG - chr1_1:62981260-62981279 Msa0034990:intron 25.0%
!!! ATGTTTTCAAGATTTTGTGA+GGG - chr1_1:62981261-62981280 Msa0034990:intron 25.0%
!!! ATGTTTTCAAGATTTTGGAA+AGG + chr1_1:62981293-62981312 Msa0034980:intron 25.0%
! AAAGATTGAAGCTTACTATT+TGG - chr1_1:62981696-62981715 Msa0034990:intron 25.0%
! AAGATTGAAGCTTACTATTT+GGG - chr1_1:62981697-62981716 Msa0034990:intron 25.0%
! AAAACCAATGAAATTCTGTT+TGG - chr1_1:62981809-62981828 Msa0034990:intron 25.0%
!!! TGGTTTTGTAATTATGATTC+AGG + chr1_1:62981917-62981936 None:intergenic 25.0%
! AATGAACTATCCATCATATT+TGG + chr1_1:62982552-62982571 None:intergenic 25.0%
! CAATATTCTCCTTATTGTAA+GGG + chr1_1:62982602-62982621 None:intergenic 25.0%
! ACAATATTCTCCTTATTGTA+AGG + chr1_1:62982603-62982622 None:intergenic 25.0%
! TGAGTAGTATAACATGAAAT+TGG - chr1_1:62982903-62982922 Msa0034990:intron 25.0%
! GAGTAGTATAACATGAAATT+GGG - chr1_1:62982904-62982923 Msa0034990:intron 25.0%
! AATATATGTTCTACTTCTCA+AGG - chr1_1:62983168-62983187 Msa0034990:intron 25.0%
! TATTATAATCTAACTGCAAC+AGG + chr1_1:62983488-62983507 None:intergenic 25.0%
! ATTTGTAGCAAAATTATCCA+GGG + chr1_1:62983792-62983811 None:intergenic 25.0%
! TATTTGTAGCAAAATTATCC+AGG + chr1_1:62983793-62983812 None:intergenic 25.0%
! ATTTAGTGTATGATGTAACA+AGG - chr1_1:62983884-62983903 Msa0034990:CDS 25.0%
! TAAGGTAAATATTAGGTCTA+TGG - chr1_1:62984006-62984025 Msa0034990:five_prime_UTR 25.0%
AAAATGAGACAAAGAAGGTA+AGG + chr1_1:62980740-62980759 Msa0034980:intron 30.0%
ACAAGAAAATGAGACAAAGA+AGG + chr1_1:62980745-62980764 Msa0034980:intron 30.0%
AGAAAGAAAGCAAAGTAAGA+AGG + chr1_1:62980772-62980791 Msa0034980:intron 30.0%
ACCAATCCTAATGAATCATT+TGG + chr1_1:62980818-62980837 Msa0034980:intron 30.0%
!! ATGATTCATTAGGATTGGTT+TGG - chr1_1:62980819-62980838 Msa0034990:CDS 30.0%
!! ATAAGTTGATATCTAGGCTT+TGG - chr1_1:62981482-62981501 Msa0034990:intron 30.0%
GGTATTCTTAAATCATTCAC+AGG - chr1_1:62981635-62981654 Msa0034990:intron 30.0%
GAAAACGTGATCTAATAACT+AGG + chr1_1:62981740-62981759 None:intergenic 30.0%
ATTTCTCGAGTAATGCTATA+AGG - chr1_1:62981778-62981797 Msa0034990:intron 30.0%
GTAACCAAACAGAATTTCAT+TGG + chr1_1:62981816-62981835 None:intergenic 30.0%
! AGCTTTAGCTATATGTCATA+TGG - chr1_1:62981966-62981985 Msa0034990:intron 30.0%
CGAATTCTATTCTAATTAGC+CGG + chr1_1:62982047-62982066 None:intergenic 30.0%
CGGCTAATTAGAATAGAATT+CGG - chr1_1:62982045-62982064 Msa0034990:intron 30.0%
AAATTCATTCATTGGAACCT+TGG - chr1_1:62982141-62982160 Msa0034990:intron 30.0%
! AGATGGGAATTTGGATTTTA+GGG - chr1_1:62982440-62982459 Msa0034990:intron 30.0%
!! ATCTAGAGAAGTGGATTTTT+CGG + chr1_1:62982472-62982491 None:intergenic 30.0%
CAAATTACATTCTACTTTGC+TGG + chr1_1:62982503-62982522 None:intergenic 30.0%
!!! ACCTTTTAGTTTTATGTGCT+GGG + chr1_1:62982653-62982672 None:intergenic 30.0%
!!! AACCTTTTAGTTTTATGTGC+TGG + chr1_1:62982654-62982673 None:intergenic 30.0%
ATGTTATACTACTCATCATC+CGG + chr1_1:62982898-62982917 None:intergenic 30.0%
AAATTGGGAAACACTAAATC+AGG - chr1_1:62982919-62982938 Msa0034990:intron 30.0%
! TGGATGATTACTTCTTTTGT+TGG - chr1_1:62983021-62983040 Msa0034990:intron 30.0%
!!! ATTACTTCTTTTGTTGGTTC+TGG - chr1_1:62983027-62983046 Msa0034990:intron 30.0%
!!! TTACTTCTTTTGTTGGTTCT+GGG - chr1_1:62983028-62983047 Msa0034990:intron 30.0%
TAGAACATATATTAGACTCG+AGG + chr1_1:62983161-62983180 None:intergenic 30.0%
AACATGAAATCTTGTAGTGT+TGG - chr1_1:62983462-62983481 Msa0034990:intron 30.0%
!!! ATTTAGTTTTTTTTGGCAGC+TGG - chr1_1:62983507-62983526 Msa0034990:intron 30.0%
!! TCTTTTGTTATAGCAATGCT+TGG - chr1_1:62983754-62983773 Msa0034990:intron 30.0%
AATATTAGATGTCAGCACTA+AGG + chr1_1:62983841-62983860 None:intergenic 30.0%
TTTGATGCAATCTTGATTAG+TGG + chr1_1:62983964-62983983 None:intergenic 30.0%
AGATTGCATCAAATTCTTGT+TGG - chr1_1:62983971-62983990 Msa0034990:five_prime_UTR 30.0%
TCAAATTCTTGTTGGCAATA+AGG - chr1_1:62983979-62983998 Msa0034990:five_prime_UTR 30.0%
AGGTGGATAAGGTAAATATT+AGG - chr1_1:62983999-62984018 Msa0034990:five_prime_UTR 30.0%
GTAAATATTAGGTCTATGGT+AGG - chr1_1:62984010-62984029 Msa0034990:five_prime_UTR 30.0%
CATTTCACCCTTTATGATCA+TGG - chr1_1:62980792-62980811 Msa0034990:CDS 35.0%
CATTTGGCCATGATCATAAA+GGG + chr1_1:62980802-62980821 Msa0034980:intron 35.0%
TCATTTGGCCATGATCATAA+AGG + chr1_1:62980803-62980822 Msa0034980:intron 35.0%
TCATGGCCAAATGATTCATT+AGG - chr1_1:62980809-62980828 Msa0034990:CDS 35.0%
GCCAAATGATTCATTAGGAT+TGG - chr1_1:62980814-62980833 Msa0034990:CDS 35.0%
ATGGGTTCTTCTTCAAAAGT+TGG - chr1_1:62980869-62980888 Msa0034990:CDS 35.0%
!! GTTTTGTTGATTGGTGATTC+TGG - chr1_1:62980920-62980939 Msa0034990:intron 35.0%
AAGAGAAGAGAACCAATAGT+GGG + chr1_1:62981010-62981029 Msa0034980:intron 35.0%
ACTAGTATTAAGCATGTGCT+CGG + chr1_1:62981394-62981413 Msa0034980:intron 35.0%
GGTAGTTTATCTGAATTCTG+TGG - chr1_1:62981546-62981565 Msa0034990:intron 35.0%
TTTGTTGCATACTGAGTTGT+CGG - chr1_1:62981614-62981633 Msa0034990:intron 35.0%
TACTAAATATACCCGTCAGA+TGG - chr1_1:62981833-62981852 Msa0034990:intron 35.0%
CAGACGATATAAAGAAGAGA+AGG + chr1_1:62981861-62981880 None:intergenic 35.0%
CTTCTCTTCTTTATATCGTC+TGG - chr1_1:62981859-62981878 Msa0034990:intron 35.0%
ACAGAATTCTGAGTTCTCTA+GGG - chr1_1:62982013-62982032 Msa0034990:intron 35.0%
AAGACAGAGAATGTATGTGT+AGG - chr1_1:62982071-62982090 Msa0034990:intron 35.0%
AGACAGAGAATGTATGTGTA+GGG - chr1_1:62982072-62982091 Msa0034990:intron 35.0%
!!! GGAGAAATAGAGTTTTAGAG+AGG - chr1_1:62982093-62982112 Msa0034990:intron 35.0%
GAATATTCTCCTTAGTGCAA+GGG + chr1_1:62982185-62982204 None:intergenic 35.0%
AGAATATTCTCCTTAGTGCA+AGG + chr1_1:62982186-62982205 None:intergenic 35.0%
!!! GTAGTTTTATGCACTGAGTT+AGG + chr1_1:62982229-62982248 None:intergenic 35.0%
ACTCAGTGCATAAAACTACA+TGG - chr1_1:62982230-62982249 Msa0034990:intron 35.0%
ATGACAAGGATGTGCTTAAA+GGG + chr1_1:62982306-62982325 None:intergenic 35.0%
TCATTTCATCCATGATGACA+AGG + chr1_1:62982320-62982339 None:intergenic 35.0%
TGGATGAAATGAGTGAACTT+AGG - chr1_1:62982328-62982347 Msa0034990:intron 35.0%
ATCCAAATTCCCATCTCAAT+TGG + chr1_1:62982436-62982455 None:intergenic 35.0%
! GAGATGGGAATTTGGATTTT+AGG - chr1_1:62982439-62982458 Msa0034990:intron 35.0%
AAAATCCACTTCTCTAGATC+AGG - chr1_1:62982473-62982492 Msa0034990:intron 35.0%
!!! TTTAGTTTTATGTGCTGGGA+TGG + chr1_1:62982649-62982668 None:intergenic 35.0%
TCCCAGCACATAAAACTAAA+AGG - chr1_1:62982649-62982668 Msa0034990:intron 35.0%
! TCTCTGTTTGGAATTTCAGT+GGG + chr1_1:62982722-62982741 None:intergenic 35.0%
! ATCTCTGTTTGGAATTTCAG+TGG + chr1_1:62982723-62982742 None:intergenic 35.0%
TTCCAAACAGAGATTACAGA+AGG - chr1_1:62982729-62982748 Msa0034990:intron 35.0%
TTTATAGCATTCGTTGTCAC+CGG - chr1_1:62982876-62982895 Msa0034990:intron 35.0%
!!! AATCAGGTTGAGGTTTTCAT+TGG - chr1_1:62982935-62982954 Msa0034990:intron 35.0%
! TTCATTGGCTATGTTGGATT+CGG - chr1_1:62982950-62982969 Msa0034990:intron 35.0%
ACCATGAGGTCTATTCTATT+GGG + chr1_1:62983088-62983107 None:intergenic 35.0%
AACCATGAGGTCTATTCTAT+TGG + chr1_1:62983089-62983108 None:intergenic 35.0%
TTACTTGATGTTGACGTCTT+TGG + chr1_1:62983133-62983152 None:intergenic 35.0%
! TGTAGCTTTTGCCAAAATCA+CGG + chr1_1:62983409-62983428 None:intergenic 35.0%
GTGATATGCTCTTATTACAG+AGG - chr1_1:62983549-62983568 Msa0034990:intron 35.0%
CTTGGATGTATTAATATCCC+TGG - chr1_1:62983772-62983791 Msa0034990:CDS 35.0%
AATTCTTGTTGGCAATAAGG+TGG - chr1_1:62983982-62984001 Msa0034990:five_prime_UTR 35.0%
CTTGCATTCATTACTTACTC+AGG - chr1_1:62984034-62984053 Msa0034990:five_prime_UTR 35.0%
! TTGATTGGTGATTCTGGTGT+TGG - chr1_1:62980926-62980945 Msa0034990:intron 40.0%
GAAGAGAAGAGAACCAATAG+TGG + chr1_1:62981011-62981030 Msa0034980:intron 40.0%
ATGTCCATACGTAGAGTTGT+TGG - chr1_1:62981153-62981172 Msa0034990:intron 40.0%
TAGACCAACAACTCTACGTA+TGG + chr1_1:62981160-62981179 Msa0034980:intron 40.0%
! ACGTAGAGTTGTTGGTCTAA+TGG - chr1_1:62981161-62981180 Msa0034990:intron 40.0%
! AAGCTTACTATTTGGGACAC+AGG - chr1_1:62981704-62981723 Msa0034990:intron 40.0%
! TTACTATTTGGGACACAGGT+TGG - chr1_1:62981708-62981727 Msa0034990:intron 40.0%
GACAGAATTCTGAGTTCTCT+AGG - chr1_1:62982012-62982031 Msa0034990:intron 40.0%
TGGAACCTTGGTCACAATAT+AGG - chr1_1:62982153-62982172 Msa0034990:intron 40.0%
TCATGCCTATATTGTGACCA+AGG + chr1_1:62982161-62982180 None:intergenic 40.0%
TGACAAGGATGTGCTTAAAG+GGG + chr1_1:62982305-62982324 None:intergenic 40.0%
GATGACAAGGATGTGCTTAA+AGG + chr1_1:62982307-62982326 None:intergenic 40.0%
TAAGCACATCCTTGTCATCA+TGG - chr1_1:62982308-62982327 Msa0034990:intron 40.0%
ATCAACCTGGTGCTTAATCA+TGG + chr1_1:62982404-62982423 None:intergenic 40.0%
TACTCTGATGCCAATTGAGA+TGG - chr1_1:62982423-62982442 Msa0034990:intron 40.0%
ACTCTGATGCCAATTGAGAT+GGG - chr1_1:62982424-62982443 Msa0034990:intron 40.0%
TGCCAATTGAGATGGGAATT+TGG - chr1_1:62982431-62982450 Msa0034990:intron 40.0%
GAATTCCTGATCTAGAGAAG+TGG + chr1_1:62982481-62982500 None:intergenic 40.0%
AATAGCGTGCCCTTACAATA+AGG - chr1_1:62982590-62982609 Msa0034990:intron 40.0%
AGCCTTCTGTAATCTCTGTT+TGG + chr1_1:62982734-62982753 None:intergenic 40.0%
ACAGAGATTACAGAAGGCTT+TGG - chr1_1:62982735-62982754 Msa0034990:intron 40.0%
! GGAAACACTAAATCAGGTTG+AGG - chr1_1:62982925-62982944 Msa0034990:intron 40.0%
!! GAGGTTTTCATTGGCTATGT+TGG - chr1_1:62982944-62982963 Msa0034990:intron 40.0%
AATCAGATTTCTCTGACCAC+TGG - chr1_1:62982994-62983013 Msa0034990:intron 40.0%
AGTAATCATCCATGAACCAG+TGG + chr1_1:62983013-62983032 None:intergenic 40.0%
AGGTCTATTCTATTGGGTCA+AGG + chr1_1:62983082-62983101 None:intergenic 40.0%
ACCCAATAGAATAGACCTCA+TGG - chr1_1:62983084-62983103 Msa0034990:CDS 40.0%
!! CTTTGGTGCCAAATCCTTTA+AGG + chr1_1:62983116-62983135 None:intergenic 40.0%
TTGAGTTCTGTTCACAGCTT+GGG + chr1_1:62983226-62983245 None:intergenic 40.0%
! TTTGAGTTCTGTTCACAGCT+TGG + chr1_1:62983227-62983246 None:intergenic 40.0%
! GTTTTGTCAGAACCACAGTT+TGG - chr1_1:62983381-62983400 Msa0034990:intron 40.0%
AAAATCACGGTACCAAACTG+TGG + chr1_1:62983396-62983415 None:intergenic 40.0%
! ACAGTTTGGTACCGTGATTT+TGG - chr1_1:62983395-62983414 Msa0034990:intron 40.0%
ATTTCAAGGGCTTGAATGTG+GGG + chr1_1:62983719-62983738 None:intergenic 40.0%
GATTTCAAGGGCTTGAATGT+GGG + chr1_1:62983720-62983739 None:intergenic 40.0%
TGATTTCAAGGGCTTGAATG+TGG + chr1_1:62983721-62983740 None:intergenic 40.0%
TTGTGCGTGCTTGATTTCAA+GGG + chr1_1:62983732-62983751 None:intergenic 40.0%
AGAGACATTTACAAACCTGG+TGG - chr1_1:62983909-62983928 Msa0034990:exon 40.0%
GAGACATTTACAAACCTGGT+GGG - chr1_1:62983910-62983929 Msa0034990:exon 40.0%
TGTTGGCAATAAGGTGGATA+AGG - chr1_1:62983988-62984007 Msa0034990:five_prime_UTR 40.0%
GATGACCTTTCTCCCACTAT+TGG - chr1_1:62980995-62981014 Msa0034990:intron 45.0%
! GAGAACCAATAGTGGGAGAA+AGG + chr1_1:62981003-62981022 Msa0034980:intron 45.0%
GTATTAAGCATGTGCTCGGT+TGG + chr1_1:62981390-62981409 Msa0034980:intron 45.0%
AAGAGAAGGAACCATCTGAC+GGG + chr1_1:62981847-62981866 None:intergenic 45.0%
GAAGAGAAGGAACCATCTGA+CGG + chr1_1:62981848-62981867 None:intergenic 45.0%
!! AATTCTGAGTTCTCTAGGGC+AGG - chr1_1:62982017-62982036 Msa0034990:intron 45.0%
AACCTGGTGCTTAATCATGG+CGG + chr1_1:62982401-62982420 None:intergenic 45.0%
! TTGGCATCAGAGTATCAACC+TGG + chr1_1:62982417-62982436 None:intergenic 45.0%
GGGCACGCTATTACTAACAA+GGG + chr1_1:62982582-62982601 None:intergenic 45.0%
AGGGCACGCTATTACTAACA+AGG + chr1_1:62982583-62982602 None:intergenic 45.0%
!! TTTCTCTGACCACTGGTTCA+TGG - chr1_1:62983001-62983020 Msa0034990:intron 45.0%
GGTTGCGTCCTTAAAGGATT+TGG - chr1_1:62983105-62983124 Msa0034990:CDS 45.0%
CCAAACATGCACTAAGCTGA+TGG + chr1_1:62983345-62983364 None:intergenic 45.0%
CCATCAGCTTAGTGCATGTT+TGG - chr1_1:62983342-62983361 Msa0034990:intron 45.0%
GCATGTTTGGATTGACAGTG+AGG - chr1_1:62983355-62983374 Msa0034990:intron 45.0%
! TCTTATTACAGAGGCGCACA+TGG - chr1_1:62983558-62983577 Msa0034990:intron 45.0%
GTGGGGAAGAATAGCAATAG+CGG + chr1_1:62983702-62983721 None:intergenic 45.0%
CTTGTGCGTGCTTGATTTCA+AGG + chr1_1:62983733-62983752 None:intergenic 45.0%
GCGAGAGACATTTACAAACC+TGG - chr1_1:62983906-62983925 Msa0034990:exon 45.0%
TTACAAACCTGGTGGGAACA+TGG - chr1_1:62983917-62983936 Msa0034990:five_prime_UTR 45.0%
TACAAACCTGGTGGGAACAT+GGG - chr1_1:62983918-62983937 Msa0034990:five_prime_UTR 45.0%
!!! TTATAATATTTAGTTTTTTT+TGG - chr1_1:62983500-62983519 Msa0034990:intron 5.0%
!! GTTCTCTAGGGCAGGAATTC+CGG - chr1_1:62982025-62982044 Msa0034990:intron 50.0%
AGGCATGAACCCTTGCACTA+AGG - chr1_1:62982173-62982192 Msa0034990:intron 50.0%
GAAAGATTCACCCCTAGGCA+TGG + chr1_1:62982375-62982394 None:intergenic 50.0%
GGATGGAAAGATTCACCCCT+AGG + chr1_1:62982380-62982399 None:intergenic 50.0%
! TGGTGCTTAATCATGGCGGA+TGG + chr1_1:62982397-62982416 None:intergenic 50.0%
ATCCGCCATGATTAAGCACC+AGG - chr1_1:62982396-62982415 Msa0034990:intron 50.0%
! CTGGGATGGAAAGTGTGTAG+TGG + chr1_1:62982635-62982654 None:intergenic 50.0%
! CCTTTAAGGACGCAACCATG+AGG + chr1_1:62983102-62983121 None:intergenic 50.0%
CCTCATGGTTGCGTCCTTAA+AGG - chr1_1:62983099-62983118 Msa0034990:CDS 50.0%
! GTGGTTTGTGTGCTCACAAG+AGG + chr1_1:62983198-62983217 None:intergenic 50.0%
GTTCACAGCTTGGGTTTGTG+TGG + chr1_1:62983217-62983236 None:intergenic 50.0%
! TTTTGGCAGCTGGACAAGAG+AGG - chr1_1:62983517-62983536 Msa0034990:intron 50.0%
GCGGTTGAGAGTTTGGTCCA+AGG + chr1_1:62980705-62980724 Msa0034980:intron 55.0%
CAAACTCTCAACCGCCTGGA+CGG - chr1_1:62980710-62980729 Msa0034990:three_prime_UTR 55.0%
GAAGGTAAGGTTGTCCGTCC+AGG + chr1_1:62980727-62980746 Msa0034980:intron 55.0%
GCAGCTGGACAAGAGAGGTT+TGG - chr1_1:62983522-62983541 Msa0034990:intron 55.0%
GGCGCACATGGAATCGTTCT+TGG - chr1_1:62983570-62983589 Msa0034990:intron 55.0%
! CTTTTGCCCATGTTCCCACC+AGG + chr1_1:62983927-62983946 None:intergenic 55.0%
GGTGGGAACATGGGCAAAAG+AGG - chr1_1:62983927-62983946 Msa0034990:five_prime_UTR 55.0%
GGACCAAACTCTCAACCGCC+TGG - chr1_1:62980706-62980725 Msa0034990:three_prime_UTR 60.0%
CGTCCAGGCGGTTGAGAGTT+TGG + chr1_1:62980712-62980731 Msa0034980:intron 60.0%
GGTAAGGTTGTCCGTCCAGG+CGG + chr1_1:62980724-62980743 Msa0034980:intron 60.0%
AGACTCCGAGTGCCATGCCT+AGG - chr1_1:62982360-62982379 Msa0034990:intron 60.0%
GACTCCGAGTGCCATGCCTA+GGG - chr1_1:62982361-62982380 Msa0034990:intron 60.0%
ACTCCGAGTGCCATGCCTAG+GGG - chr1_1:62982362-62982381 Msa0034990:intron 60.0%
TCACCCCTAGGCATGGCACT+CGG + chr1_1:62982368-62982387 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 62980694 62984089 62980694 ID=Msa0034990;Name=Msa0034990
chr1_1 mRNA 62980694 62984089 62980694 ID=Msa0034990-mRNA-1;Parent=Msa0034990;Name=Msa0034990-mRNA-1;_AED=0.03;_eAED=0.03;_QI=175|1|1|1|1|1|4|90|130
chr1_1 exon 62980694 62980893 62980694 ID=Msa0034990-mRNA-1:exon:19973;Parent=Msa0034990-mRNA-1
chr1_1 exon 62981192 62981257 62981192 ID=Msa0034990-mRNA-1:exon:19972;Parent=Msa0034990-mRNA-1
chr1_1 exon 62983058 62983126 62983058 ID=Msa0034990-mRNA-1:exon:19971;Parent=Msa0034990-mRNA-1
chr1_1 exon 62983767 62984089 62983767 ID=Msa0034990-mRNA-1:exon:19970;Parent=Msa0034990-mRNA-1
chr1_1 five_prime_UTR 62983915 62984089 62983915 ID=Msa0034990-mRNA-1:five_prime_utr;Parent=Msa0034990-mRNA-1
chr1_1 CDS 62983767 62983914 62983767 ID=Msa0034990-mRNA-1:cds;Parent=Msa0034990-mRNA-1
chr1_1 CDS 62983058 62983126 62983058 ID=Msa0034990-mRNA-1:cds;Parent=Msa0034990-mRNA-1
chr1_1 CDS 62981192 62981257 62981192 ID=Msa0034990-mRNA-1:cds;Parent=Msa0034990-mRNA-1
chr1_1 CDS 62980784 62980893 62980784 ID=Msa0034990-mRNA-1:cds;Parent=Msa0034990-mRNA-1
chr1_1 three_prime_UTR 62980694 62980783 62980694 ID=Msa0034990-mRNA-1:three_prime_utr;Parent=Msa0034990-mRNA-1
Gene Sequence

>Msa0034990

ATGGGTTCTTCTTCAAAAGTTGGAAATAGTAACTATGATTACTCTTTTAAGGTTTTGTTGATTGGTGATTCTGGTGTTGGCAAGAGTAGTCTTCTTCTCAGCTTTATCTCTAATGCTAACTCACTTGATGACCTTTCTCCCACTATTGGAGTAGATTTCAAAATCAAGCATTTTACAATTGGTGATAAAAGATTGAAGCTTACTATTTGGGACACAGCTGGACAAGAGAGGTTTGGAACAGTGATATGCTCTTATTACAGAGGCGCACATGGAATCGTTCTTGTGTATGATGTAACAAGGCGAGAGACATTTACAAACCTGGTGGGAACATGGGCAAAAGAGGTTGACTTTACTCCACTAATCAAGATTGCATCAAATTCTTGTTGGCAATAA
Protein sequence

>Msa0034990

MGSSSKVGNSNYDYSFKVLLIGDSGVGKSSLLLSFISNANSLDDLSPTIGVDFKIKHFTIGDKRLKLTIWDTAGQERFGTVICSYYRGAHGIVLVYDVTRRETFTNLVGTWAKEVDFTPLIKIASNSCWQ*