Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035030 | sp|P23923|HBP1B_WHEAT | 56.609 | 348 | 87 | 10 | 34 | 333 | 1 | 332 | 3.05e-114 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0035030 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035030 | Msa0090160 | 0.844734 | 6.291242e-59 | -8.615850e-47 |
| Msa0035030 | Msa0137790 | 0.897472 | 1.360167e-76 | -8.615850e-47 |
| Msa0035030 | Msa1345930 | 0.883729 | 3.504933e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035030 | MtrunA17_Chr1g0210151 | 78.902 | 346 | 23 | 3 | 34 | 334 | 1 | 341 | 0.0 | 509 |
| Msa0035030 | MtrunA17_Chr8g0353501 | 56.647 | 346 | 90 | 9 | 34 | 333 | 135 | 466 | 4.15e-116 | 343 |
| Msa0035030 | MtrunA17_Chr5g0422771 | 50.743 | 404 | 122 | 11 | 5 | 333 | 63 | 464 | 4.40e-116 | 343 |
| Msa0035030 | MtrunA17_Chr7g0256211 | 56.211 | 322 | 86 | 6 | 65 | 333 | 133 | 452 | 4.38e-114 | 338 |
| Msa0035030 | MtrunA17_Chr1g0174701 | 48.311 | 296 | 104 | 4 | 87 | 333 | 211 | 506 | 2.06e-87 | 271 |
| Msa0035030 | MtrunA17_Chr7g0258321 | 46.519 | 316 | 113 | 6 | 74 | 333 | 148 | 463 | 4.60e-87 | 269 |
| Msa0035030 | MtrunA17_Chr3g0093451 | 68.500 | 200 | 11 | 4 | 57 | 204 | 10 | 209 | 9.70e-85 | 254 |
| Msa0035030 | MtrunA17_Chr2g0321431 | 46.643 | 283 | 103 | 3 | 92 | 333 | 194 | 469 | 1.13e-81 | 256 |
| Msa0035030 | MtrunA17_Chr3g0124601 | 48.601 | 286 | 100 | 5 | 92 | 333 | 79 | 361 | 1.94e-81 | 251 |
| Msa0035030 | MtrunA17_Chr4g0026401 | 46.048 | 291 | 116 | 5 | 79 | 333 | 176 | 461 | 2.20e-78 | 248 |
| Msa0035030 | MtrunA17_Chr8g0382861 | 43.007 | 286 | 117 | 4 | 91 | 333 | 74 | 356 | 1.05e-71 | 226 |
| Msa0035030 | MtrunA17_Chr3g0115371 | 40.594 | 303 | 127 | 5 | 77 | 331 | 50 | 347 | 1.31e-65 | 211 |
| Msa0035030 | MtrunA17_Chr5g0424861 | 42.807 | 285 | 111 | 6 | 92 | 329 | 67 | 346 | 1.25e-59 | 195 |
| Msa0035030 | MtrunA17_Chr5g0424851 | 45.029 | 171 | 92 | 1 | 159 | 329 | 53 | 221 | 1.66e-41 | 149 |
| Msa0035030 | MtrunA17_Chr5g0424851 | 41.718 | 163 | 92 | 1 | 159 | 321 | 267 | 426 | 3.19e-36 | 135 |
| Msa0035030 | MtrunA17_Chr1g0196951 | 33.146 | 178 | 90 | 6 | 145 | 315 | 74 | 229 | 8.83e-17 | 78.6 |
| Msa0035030 | MtrunA17_Chr2g0315631 | 27.027 | 185 | 101 | 3 | 158 | 322 | 39 | 209 | 3.51e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035030 | AT1G68640.1 | 57.593 | 349 | 91 | 6 | 30 | 333 | 116 | 452 | 1.69e-109 | 327 |
| Msa0035030 | AT5G06950.2 | 57.282 | 309 | 81 | 7 | 72 | 333 | 26 | 330 | 1.37e-106 | 315 |
| Msa0035030 | AT5G06950.4 | 57.282 | 309 | 81 | 7 | 72 | 333 | 26 | 330 | 1.37e-106 | 315 |
| Msa0035030 | AT5G06950.1 | 57.282 | 309 | 81 | 7 | 72 | 333 | 26 | 330 | 1.37e-106 | 315 |
| Msa0035030 | AT5G06950.5 | 57.282 | 309 | 81 | 7 | 72 | 333 | 26 | 330 | 1.37e-106 | 315 |
| Msa0035030 | AT5G06950.3 | 57.282 | 309 | 81 | 7 | 72 | 333 | 26 | 330 | 1.37e-106 | 315 |
| Msa0035030 | AT3G12250.6 | 51.304 | 345 | 108 | 6 | 34 | 333 | 1 | 330 | 6.87e-106 | 313 |
| Msa0035030 | AT3G12250.2 | 51.304 | 345 | 108 | 6 | 34 | 333 | 1 | 330 | 6.87e-106 | 313 |
| Msa0035030 | AT3G12250.7 | 51.304 | 345 | 108 | 6 | 34 | 333 | 1 | 330 | 6.87e-106 | 313 |
| Msa0035030 | AT3G12250.1 | 51.304 | 345 | 108 | 6 | 34 | 333 | 1 | 330 | 6.87e-106 | 313 |
| Msa0035030 | AT3G12250.4 | 50.000 | 360 | 115 | 7 | 34 | 333 | 1 | 355 | 1.98e-104 | 310 |
| Msa0035030 | AT3G12250.5 | 55.629 | 302 | 84 | 5 | 77 | 333 | 7 | 303 | 7.85e-104 | 307 |
| Msa0035030 | AT3G12250.3 | 54.516 | 310 | 91 | 5 | 69 | 333 | 20 | 324 | 9.11e-104 | 307 |
| Msa0035030 | AT5G06960.2 | 55.363 | 289 | 82 | 4 | 90 | 333 | 44 | 330 | 1.12e-98 | 295 |
| Msa0035030 | AT5G06960.1 | 55.363 | 289 | 82 | 4 | 90 | 333 | 44 | 330 | 1.12e-98 | 295 |
| Msa0035030 | AT5G06960.3 | 55.363 | 289 | 82 | 4 | 90 | 333 | 24 | 310 | 1.72e-98 | 293 |
| Msa0035030 | AT1G08320.2 | 49.662 | 296 | 105 | 5 | 77 | 333 | 39 | 329 | 5.24e-91 | 276 |
| Msa0035030 | AT1G08320.5 | 49.662 | 296 | 105 | 5 | 77 | 333 | 39 | 329 | 5.24e-91 | 276 |
| Msa0035030 | AT1G08320.1 | 49.662 | 296 | 105 | 5 | 77 | 333 | 163 | 453 | 1.78e-89 | 276 |
| Msa0035030 | AT1G08320.4 | 49.662 | 296 | 105 | 5 | 77 | 333 | 163 | 453 | 1.78e-89 | 276 |
| Msa0035030 | AT1G08320.3 | 49.662 | 296 | 105 | 5 | 77 | 333 | 163 | 453 | 1.78e-89 | 276 |
| Msa0035030 | AT5G10030.5 | 47.735 | 287 | 101 | 4 | 92 | 333 | 80 | 362 | 1.79e-81 | 252 |
| Msa0035030 | AT5G10030.3 | 47.735 | 287 | 101 | 4 | 92 | 333 | 80 | 362 | 1.79e-81 | 252 |
| Msa0035030 | AT5G10030.1 | 47.735 | 287 | 101 | 4 | 92 | 333 | 80 | 362 | 1.79e-81 | 252 |
| Msa0035030 | AT5G10030.4 | 47.735 | 287 | 101 | 4 | 92 | 333 | 80 | 362 | 1.79e-81 | 252 |
| Msa0035030 | AT5G10030.2 | 47.735 | 287 | 101 | 4 | 92 | 333 | 80 | 362 | 1.79e-81 | 252 |
| Msa0035030 | AT1G77920.1 | 43.149 | 343 | 154 | 8 | 27 | 333 | 29 | 366 | 1.38e-79 | 247 |
| Msa0035030 | AT5G65210.6 | 46.207 | 290 | 101 | 5 | 92 | 333 | 14 | 296 | 1.35e-77 | 240 |
| Msa0035030 | AT5G06839.2 | 42.810 | 306 | 114 | 5 | 87 | 333 | 113 | 416 | 3.25e-77 | 243 |
| Msa0035030 | AT5G06839.1 | 43.234 | 303 | 116 | 4 | 87 | 333 | 113 | 415 | 4.32e-77 | 242 |
| Msa0035030 | AT5G65210.5 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 4.66e-77 | 241 |
| Msa0035030 | AT5G65210.7 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 4.66e-77 | 241 |
| Msa0035030 | AT5G65210.3 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 4.66e-77 | 241 |
| Msa0035030 | AT5G65210.1 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 4.66e-77 | 241 |
| Msa0035030 | AT5G65210.2 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 4.66e-77 | 241 |
| Msa0035030 | AT5G65210.4 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 4.66e-77 | 241 |
| Msa0035030 | AT5G06839.3 | 43.234 | 303 | 116 | 4 | 87 | 333 | 156 | 458 | 5.84e-77 | 243 |
| Msa0035030 | AT1G22070.1 | 46.875 | 288 | 106 | 4 | 92 | 334 | 98 | 383 | 8.19e-76 | 238 |
Find 77 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGTATTTCACATACTTTC+TGG | 0.133806 | 1_1:+63041108 | Msa0035030:CDS |
| TTCGAGCTCTTAATTCATTA+TGG | 0.231768 | 1_1:+63041925 | Msa0035030:CDS |
| ATTGTTGGAAATAGTAATTC+AGG | 0.251776 | 1_1:+63040623 | Msa0035030:CDS |
| CAATTCCTTTAGTATTCTTT+AGG | 0.266207 | 1_1:-63041957 | None:intergenic |
| GAAAAGTAGGTTAAGGAAAA+AGG | 0.288507 | 1_1:+63039762 | Msa0035030:CDS |
| CCGTTCTTCCGAACTTCTTA+AGG | 0.301460 | 1_1:+63041179 | Msa0035030:CDS |
| ATGTATTTCACATACTTTCT+GGG | 0.339033 | 1_1:+63041109 | Msa0035030:CDS |
| AAACCACCTTGAGCCGTTAT+CGG | 0.365933 | 1_1:+63041487 | Msa0035030:CDS |
| CTTAGTCTTGCATTGATCCT+TGG | 0.372651 | 1_1:-63039566 | None:intergenic |
| TCATATTCAGGCTATGTGTT+TGG | 0.384585 | 1_1:+63039151 | None:intergenic |
| ATTGGTTCAGCTTCTTCTTC+AGG | 0.387251 | 1_1:+63039316 | Msa0035030:CDS |
| TGGCCATTGCAAGAGCCATT+TGG | 0.388199 | 1_1:-63041661 | None:intergenic |
| TTCACATACTTTCTGGGTTG+TGG | 0.392509 | 1_1:+63041115 | Msa0035030:CDS |
| ACCATGATCCGCTGGAACTC+CGG | 0.404015 | 1_1:-63040594 | None:intergenic |
| TCCTCCACATCCACTGGATC+TGG | 0.420633 | 1_1:+63041617 | Msa0035030:CDS |
| GATCATGGTCATTCAATTGT+TGG | 0.432278 | 1_1:+63040608 | Msa0035030:CDS |
| TAGGGTGCATTTGTTGCAAC+CGG | 0.435060 | 1_1:+63040575 | Msa0035030:intron |
| CAAAATCACCTTAAGAAGTT+CGG | 0.438279 | 1_1:-63041187 | None:intergenic |
| ACTAGAGACTTTCATTCATC+AGG | 0.451246 | 1_1:+63041694 | Msa0035030:CDS |
| AGTGTTTATCCACCGTGTCT+TGG | 0.455646 | 1_1:+63039503 | Msa0035030:intron |
| TGTGAATATCATCACATTCA+AGG | 0.465804 | 1_1:+63042118 | Msa0035030:three_prime_UTR |
| AGTCTCTAGTGTGGCAAGCT+TGG | 0.468295 | 1_1:-63041681 | None:intergenic |
| GTTGCAAGTAACTTGCAGTA+TGG | 0.469501 | 1_1:+63039199 | Msa0035030:CDS |
| TTCAGCTTCTTCTTCAGGCA+TGG | 0.471184 | 1_1:+63039321 | Msa0035030:CDS |
| CAAGGATCAATGCAAGACTA+AGG | 0.474390 | 1_1:+63039567 | Msa0035030:CDS |
| ATAGGCATATGTGCAACAAT+TGG | 0.478088 | 1_1:+63040393 | Msa0035030:intron |
| TGGAAATGTTGCTGAGTACA+TGG | 0.493141 | 1_1:+63041637 | Msa0035030:CDS |
| CAAGGAGAGCGCGAGCAGCT+TGG | 0.498749 | 1_1:-63041878 | None:intergenic |
| ATCAACTGCTGATCCGATAA+CGG | 0.503931 | 1_1:-63041500 | None:intergenic |
| AATTGGAGAACAGTCGACTT+AGG | 0.507628 | 1_1:+63040410 | Msa0035030:CDS |
| TTTCTTAGGCTGATCTCTTG+AGG | 0.513370 | 1_1:+63041814 | Msa0035030:intron |
| GTGAATATCATCACATTCAA+GGG | 0.518441 | 1_1:+63042119 | Msa0035030:three_prime_UTR |
| ACCGGAGTTCCAGCGGATCA+TGG | 0.518939 | 1_1:+63040593 | Msa0035030:CDS |
| TTATCGGATCAGCAGTTGAT+GGG | 0.521698 | 1_1:+63041503 | Msa0035030:CDS |
| ATTTCCAGATCCAGTGGATG+TGG | 0.524593 | 1_1:-63041621 | None:intergenic |
| CATGTCCTAAAGAATACTAA+AGG | 0.527396 | 1_1:+63041952 | Msa0035030:CDS |
| ACACTATCCTCCACATCCAC+TGG | 0.532462 | 1_1:+63041611 | Msa0035030:CDS |
| CACATGAAACATCTTTCTGC+AGG | 0.533251 | 1_1:-63041144 | None:intergenic |
| CTGCAAGGAAAAGTAGGTTA+AGG | 0.538526 | 1_1:+63039755 | Msa0035030:CDS |
| TGCTGAGTACATGGGCCAAA+TGG | 0.539603 | 1_1:+63041646 | Msa0035030:CDS |
| TCTTGTAGTTGTTGAATCCA+AGG | 0.540392 | 1_1:+63039549 | Msa0035030:CDS |
| CCTTAAGAAGTTCGGAAGAA+CGG | 0.540585 | 1_1:-63041179 | None:intergenic |
| GTTATCGGATCAGCAGTTGA+TGG | 0.541892 | 1_1:+63041502 | Msa0035030:CDS |
| TCCACCGTGTCTTGGTGCAA+TGG | 0.545619 | 1_1:+63039511 | Msa0035030:CDS |
| GTGCAATGGTGTTGGAAATG+TGG | 0.548162 | 1_1:+63039525 | Msa0035030:CDS |
| GTTGAAGAGCATAGCTGCAA+AGG | 0.551361 | 1_1:+63041083 | Msa0035030:CDS |
| GGGCCAAATGGCTCTTGCAA+TGG | 0.552891 | 1_1:+63041658 | Msa0035030:CDS |
| GTGAGGCTGCAAGGAAAAGT+AGG | 0.555483 | 1_1:+63039749 | Msa0035030:CDS |
| TGCAGAATCGTGAGGCTGCA+AGG | 0.558257 | 1_1:+63039740 | Msa0035030:CDS |
| AGCGCGAGCAGCTTGGTGCG+CGG | 0.560510 | 1_1:-63041871 | None:intergenic |
| ACTAGTACATATCAATATGT+AGG | 0.562068 | 1_1:-63042064 | None:intergenic |
| GCTGAGGATGCTTTATCTCA+AGG | 0.575247 | 1_1:+63041557 | Msa0035030:CDS |
| ATTGAATGACCATGATCCGC+TGG | 0.583662 | 1_1:-63040602 | None:intergenic |
| GCTGATCCGATAACGGCTCA+AGG | 0.599388 | 1_1:-63041493 | None:intergenic |
| GGATGCTTTATCTCAAGGAA+TGG | 0.606203 | 1_1:+63041562 | Msa0035030:CDS |
| TTGTGTATTGTATAGAACAT+TGG | 0.607394 | 1_1:+63039298 | Msa0035030:intron |
| TGTTGCAACCGGAGTTCCAG+CGG | 0.611050 | 1_1:+63040586 | Msa0035030:CDS |
| GTGTCTTGGTGCAATGGTGT+TGG | 0.611763 | 1_1:+63039517 | Msa0035030:CDS |
| AGCAACATTTCCAGATCCAG+TGG | 0.612783 | 1_1:-63041627 | None:intergenic |
| AAGGATCAATGCAAGACTAA+GGG | 0.612820 | 1_1:+63039568 | Msa0035030:CDS |
| GCATAACTAGTGTGTAGTGT+AGG | 0.616189 | 1_1:+63041984 | Msa0035030:three_prime_UTR |
| GAAAGATGTTTCATGTGGCT+CGG | 0.616317 | 1_1:+63041150 | Msa0035030:CDS |
| GCATTCTTCTCAGCAAGCTG+AGG | 0.619429 | 1_1:+63041541 | Msa0035030:CDS |
| TCCAGATCCAGTGGATGTGG+AGG | 0.620584 | 1_1:-63041618 | None:intergenic |
| AACACCATTGCACCAAGACA+CGG | 0.624897 | 1_1:-63039515 | None:intergenic |
| AAATGAAATCATTTATGACA+AGG | 0.642100 | 1_1:-63041896 | None:intergenic |
| AGATGTTTCATGTGGCTCGG+TGG | 0.642187 | 1_1:+63041153 | Msa0035030:CDS |
| GGGTCAATCTGATGAGCACA+AGG | 0.645680 | 1_1:+63039588 | Msa0035030:CDS |
| TATCGGATCAGCAGTTGATG+GGG | 0.649177 | 1_1:+63041504 | Msa0035030:CDS |
| ATGGCAATTAGTTTCAAGCG+TGG | 0.657689 | 1_1:-63042162 | None:intergenic |
| TGAATATCATCACATTCAAG+GGG | 0.658475 | 1_1:+63042120 | Msa0035030:three_prime_UTR |
| TCGGCTGATGCAGAATCGTG+AGG | 0.665525 | 1_1:+63039732 | Msa0035030:CDS |
| CTGCAGAAAGATGTTTCATG+TGG | 0.677608 | 1_1:+63041145 | Msa0035030:CDS |
| GGAAATGTTGCTGAGTACAT+GGG | 0.694330 | 1_1:+63041638 | Msa0035030:CDS |
| ATGAATGAAAGTCTCTAGTG+TGG | 0.704515 | 1_1:-63041690 | None:intergenic |
| ACCATTGCACCAAGACACGG+TGG | 0.708421 | 1_1:-63039512 | None:intergenic |
| GATCCGATAACGGCTCAAGG+TGG | 0.733902 | 1_1:-63041490 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAATTTAAATTTGAAT+TGG | - | chr1_1:63039658-63039677 | None:intergenic | 10.0% |
| !!! | TTAAAATAGAAATTGTATTT+TGG | + | chr1_1:63041307-63041326 | Msa0035030:intron | 10.0% |
| !!! | TAAAATAGAAATTGTATTTT+GGG | + | chr1_1:63041308-63041327 | Msa0035030:intron | 10.0% |
| !! | TTACTGATACATTTATTTAT+GGG | + | chr1_1:63039687-63039706 | Msa0035030:intron | 15.0% |
| !!! | TACTGATAAAACATTTTAAT+TGG | + | chr1_1:63040277-63040296 | Msa0035030:intron | 15.0% |
| !!! | TGCATTTTACAAATTAATTA+TGG | + | chr1_1:63040862-63040881 | Msa0035030:intron | 15.0% |
| !! | AAGTAATTAACTAACTTAAA+TGG | + | chr1_1:63041387-63041406 | Msa0035030:intron | 15.0% |
| !! | TACATAGATATTGAAATAGT+GGG | - | chr1_1:63039443-63039462 | None:intergenic | 20.0% |
| !! | ATACATAGATATTGAAATAG+TGG | - | chr1_1:63039444-63039463 | None:intergenic | 20.0% |
| !! | GTTACTGATACATTTATTTA+TGG | + | chr1_1:63039686-63039705 | Msa0035030:intron | 20.0% |
| !!! | GTATATTTTAATCTGTCAAA+GGG | + | chr1_1:63040173-63040192 | Msa0035030:intron | 20.0% |
| !!! | TATATGTTTTGGTTTTGAAT+AGG | + | chr1_1:63040375-63040394 | Msa0035030:intron | 20.0% |
| !!! | AACTTCAAAGATTTTTCATT+TGG | + | chr1_1:63040482-63040501 | Msa0035030:intron | 20.0% |
| !!! | GATTTTTCATTTGGTAAAAT+TGG | + | chr1_1:63040491-63040510 | Msa0035030:intron | 20.0% |
| !! | TAGGAAAGATTATTATAAAG+TGG | + | chr1_1:63041336-63041355 | Msa0035030:intron | 20.0% |
| !! | TATTATAAAGTGGTTATATC+AGG | + | chr1_1:63041346-63041365 | Msa0035030:intron | 20.0% |
| !!! | TACTTAGTTTGTTAGTATAT+AGG | - | chr1_1:63041372-63041391 | None:intergenic | 20.0% |
| !! | AAATGAAATCATTTATGACA+AGG | - | chr1_1:63041899-63041918 | None:intergenic | 20.0% |
| ! | TTGTGTATTGTATAGAACAT+TGG | + | chr1_1:63039298-63039317 | Msa0035030:intron | 25.0% |
| ! | TGGATAAACACTGAAAAATA+AGG | - | chr1_1:63039495-63039514 | None:intergenic | 25.0% |
| !!! | TTTATGGGTTACATTTTCTT+AGG | + | chr1_1:63039702-63039721 | Msa0035030:intron | 25.0% |
| !! | AACCTTCTGAAAAATTGTTA+TGG | + | chr1_1:63039989-63040008 | Msa0035030:intron | 25.0% |
| !!! | TGATCATCTAATTTGACTTT+TGG | + | chr1_1:63040088-63040107 | Msa0035030:intron | 25.0% |
| !!! | GATCATCTAATTTGACTTTT+GGG | + | chr1_1:63040089-63040108 | Msa0035030:intron | 25.0% |
| !!! | GGTATATTTTAATCTGTCAA+AGG | + | chr1_1:63040172-63040191 | Msa0035030:intron | 25.0% |
| !!! | TGAAAAATCTTTGAAGTTGT+TGG | - | chr1_1:63040480-63040499 | None:intergenic | 25.0% |
| !!! | CATTCTACTTATTTTTTCCA+TGG | + | chr1_1:63040537-63040556 | Msa0035030:intron | 25.0% |
| ! | ATTGTTGGAAATAGTAATTC+AGG | + | chr1_1:63040623-63040642 | Msa0035030:CDS | 25.0% |
| !!! | ATGAAGTATTTTAAACCTTC+AGG | + | chr1_1:63040907-63040926 | Msa0035030:intron | 25.0% |
| ! | ATCAGCTATAAATTCTCAAA+TGG | + | chr1_1:63040999-63041018 | Msa0035030:intron | 25.0% |
| ! | TCAGCTATAAATTCTCAAAT+GGG | + | chr1_1:63041000-63041019 | Msa0035030:intron | 25.0% |
| ! | ATGTATTTCACATACTTTCT+GGG | + | chr1_1:63041109-63041128 | Msa0035030:CDS | 25.0% |
| !!! | ATTTTAGTGTTAAGCTAAGA+TGG | - | chr1_1:63041223-63041242 | None:intergenic | 25.0% |
| !!! | AATTGTATTTTGGGATGAAT+AGG | + | chr1_1:63041317-63041336 | Msa0035030:intron | 25.0% |
| ! | TTATCACACTCAATTAATTG+TGG | - | chr1_1:63041769-63041788 | None:intergenic | 25.0% |
| !!! | TTGTGAACATTGTTTTTCTT+AGG | + | chr1_1:63041800-63041819 | Msa0035030:intron | 25.0% |
| ! | CAATTCCTTTAGTATTCTTT+AGG | - | chr1_1:63041960-63041979 | None:intergenic | 25.0% |
| ! | ATCAGTAGTTAAGAAAAACA+AGG | - | chr1_1:63042037-63042056 | None:intergenic | 25.0% |
| ! | ACTAGTACATATCAATATGT+AGG | - | chr1_1:63042067-63042086 | None:intergenic | 25.0% |
| ACACAACATTGAATCAGATA+AGG | - | chr1_1:63039284-63039303 | None:intergenic | 30.0% | |
| TACATTTGATGTATGAAGAG+TGG | + | chr1_1:63039463-63039482 | Msa0035030:intron | 30.0% | |
| GAAAAGTAGGTTAAGGAAAA+AGG | + | chr1_1:63039762-63039781 | Msa0035030:CDS | 30.0% | |
| AAGACAAATCATAAGTTAGG+AGG | - | chr1_1:63039801-63039820 | None:intergenic | 30.0% | |
| CACAAGACAAATCATAAGTT+AGG | - | chr1_1:63039804-63039823 | None:intergenic | 30.0% | |
| !!! | TCTAATTTGACTTTTGGGAT+TGG | + | chr1_1:63040094-63040113 | Msa0035030:intron | 30.0% |
| AGATTAAAATATACCAGAGC+AGG | - | chr1_1:63040167-63040186 | None:intergenic | 30.0% | |
| TAATTGGACCTTTCTCTAAA+AGG | + | chr1_1:63040293-63040312 | Msa0035030:intron | 30.0% | |
| ! | CTGGACTAAGTTATATGTTT+TGG | + | chr1_1:63040364-63040383 | Msa0035030:intron | 30.0% |
| TCCTTAGAACTAATCATTCT+TGG | + | chr1_1:63040777-63040796 | Msa0035030:intron | 30.0% | |
| !! | ACCAAGAATGATTAGTTCTA+AGG | - | chr1_1:63040781-63040800 | None:intergenic | 30.0% |
| GCAACAAAATAGATGATCAA+TGG | + | chr1_1:63040803-63040822 | Msa0035030:intron | 30.0% | |
| AATGGACACTTAAATTCATG+CGG | + | chr1_1:63040821-63040840 | Msa0035030:intron | 30.0% | |
| GATGTATTTCACATACTTTC+TGG | + | chr1_1:63041108-63041127 | Msa0035030:CDS | 30.0% | |
| CAAAATCACCTTAAGAAGTT+CGG | - | chr1_1:63041190-63041209 | None:intergenic | 30.0% | |
| ! | GTGAAAAGTTTCAAAAGTGT+CGG | + | chr1_1:63041276-63041295 | Msa0035030:intron | 30.0% |
| AAGAAAAAACAAATGCGAAG+AGG | - | chr1_1:63041447-63041466 | None:intergenic | 30.0% | |
| TTCGAGCTCTTAATTCATTA+TGG | + | chr1_1:63041925-63041944 | Msa0035030:CDS | 30.0% | |
| CATGTCCTAAAGAATACTAA+AGG | + | chr1_1:63041952-63041971 | Msa0035030:CDS | 30.0% | |
| TGTGAATATCATCACATTCA+AGG | + | chr1_1:63042118-63042137 | Msa0035030:three_prime_UTR | 30.0% | |
| GTGAATATCATCACATTCAA+GGG | + | chr1_1:63042119-63042138 | Msa0035030:three_prime_UTR | 30.0% | |
| TGAATATCATCACATTCAAG+GGG | + | chr1_1:63042120-63042139 | Msa0035030:three_prime_UTR | 30.0% | |
| AAAGACGGTTGAAATGTACT+TGG | - | chr1_1:63039411-63039430 | None:intergenic | 35.0% | |
| AGTGGGAAAAGATCAAAAGA+CGG | - | chr1_1:63039426-63039445 | None:intergenic | 35.0% | |
| TCTTGTAGTTGTTGAATCCA+AGG | + | chr1_1:63039549-63039568 | Msa0035030:CDS | 35.0% | |
| AAGGATCAATGCAAGACTAA+GGG | + | chr1_1:63039568-63039587 | Msa0035030:CDS | 35.0% | |
| GCACAAAGTCACAATAAAAG+TGG | - | chr1_1:63039632-63039651 | None:intergenic | 35.0% | |
| AGTTAACCCGAAAAAGAACA+TGG | - | chr1_1:63039909-63039928 | None:intergenic | 35.0% | |
| !! | GGCCATAACAATTTTTCAGA+AGG | - | chr1_1:63039994-63040013 | None:intergenic | 35.0% |
| CTGAAAAATTGTTATGGCCA+AGG | + | chr1_1:63039995-63040014 | Msa0035030:intron | 35.0% | |
| !!! | ATTTTGTTTTCTTCCTGCTC+TGG | + | chr1_1:63040151-63040170 | Msa0035030:intron | 35.0% |
| !! | GATGTCTTCCTTTTAGAGAA+AGG | - | chr1_1:63040304-63040323 | None:intergenic | 35.0% |
| TTCGTACGATATAGCATTAC+TGG | + | chr1_1:63040345-63040364 | Msa0035030:intron | 35.0% | |
| ATAGGCATATGTGCAACAAT+TGG | + | chr1_1:63040393-63040412 | Msa0035030:intron | 35.0% | |
| GATCATGGTCATTCAATTGT+TGG | + | chr1_1:63040608-63040627 | Msa0035030:CDS | 35.0% | |
| TGTGAAGGAAATGAAACTCA+AGG | - | chr1_1:63040662-63040681 | None:intergenic | 35.0% | |
| AGGTGCATTAGCATTTGATA+TGG | + | chr1_1:63040927-63040946 | Msa0035030:intron | 35.0% | |
| ! | TTGATATGGATTATGCTCGT+TGG | + | chr1_1:63040941-63040960 | Msa0035030:intron | 35.0% |
| ! | TGATATGGATTATGCTCGTT+GGG | + | chr1_1:63040942-63040961 | Msa0035030:intron | 35.0% |
| AAAAACAAATGCGAAGAGGA+AGG | - | chr1_1:63041443-63041462 | None:intergenic | 35.0% | |
| ATGAATGAAAGTCTCTAGTG+TGG | - | chr1_1:63041693-63041712 | None:intergenic | 35.0% | |
| ACTAGAGACTTTCATTCATC+AGG | + | chr1_1:63041694-63041713 | Msa0035030:CDS | 35.0% | |
| ! | GTTGCAAGTAACTTGCAGTA+TGG | + | chr1_1:63039199-63039218 | Msa0035030:CDS | 40.0% |
| ! | ATTGGTTCAGCTTCTTCTTC+AGG | + | chr1_1:63039316-63039335 | Msa0035030:CDS | 40.0% |
| !! | CTTAGTCTTGCATTGATCCT+TGG | - | chr1_1:63039569-63039588 | None:intergenic | 40.0% |
| CAAGGATCAATGCAAGACTA+AGG | + | chr1_1:63039567-63039586 | Msa0035030:CDS | 40.0% | |
| ! | CATTTTCTTAGGCTCTTCGT+CGG | + | chr1_1:63039713-63039732 | Msa0035030:intron | 40.0% |
| CTGCAAGGAAAAGTAGGTTA+AGG | + | chr1_1:63039755-63039774 | Msa0035030:CDS | 40.0% | |
| ! | TCCAGCTCCATGTTCTTTTT+CGG | + | chr1_1:63039899-63039918 | Msa0035030:intron | 40.0% |
| TTGTTATGGCCAAGGACATA+AGG | + | chr1_1:63040003-63040022 | Msa0035030:intron | 40.0% | |
| ! | AATTGGAGAACAGTCGACTT+AGG | + | chr1_1:63040410-63040429 | Msa0035030:CDS | 40.0% |
| TATAGGGGAAAAGCAATCCA+TGG | - | chr1_1:63040557-63040576 | None:intergenic | 40.0% | |
| !! | ATGGATTGCTTTTCCCCTAT+AGG | + | chr1_1:63040556-63040575 | Msa0035030:intron | 40.0% |
| !! | TGGATTGCTTTTCCCCTATA+GGG | + | chr1_1:63040557-63040576 | Msa0035030:intron | 40.0% |
| TGCAACAAATGCACCCTATA+GGG | - | chr1_1:63040573-63040592 | None:intergenic | 40.0% | |
| TTGCAACAAATGCACCCTAT+AGG | - | chr1_1:63040574-63040593 | None:intergenic | 40.0% | |
| GAGTTTCATTTCCTTCACAG+TGG | + | chr1_1:63040663-63040682 | Msa0035030:intron | 40.0% | |
| TCAAATGCTAATGCACCTGA+AGG | - | chr1_1:63040925-63040944 | None:intergenic | 40.0% | |
| GAACTGCATCTTCTTGTTGA+AGG | + | chr1_1:63041030-63041049 | Msa0035030:intron | 40.0% | |
| TTCACATACTTTCTGGGTTG+TGG | + | chr1_1:63041115-63041134 | Msa0035030:CDS | 40.0% | |
| CACATGAAACATCTTTCTGC+AGG | - | chr1_1:63041147-63041166 | None:intergenic | 40.0% | |
| CTGCAGAAAGATGTTTCATG+TGG | + | chr1_1:63041145-63041164 | Msa0035030:CDS | 40.0% | |
| GAAAGATGTTTCATGTGGCT+CGG | + | chr1_1:63041150-63041169 | Msa0035030:CDS | 40.0% | |
| CCTTAAGAAGTTCGGAAGAA+CGG | - | chr1_1:63041182-63041201 | None:intergenic | 40.0% | |
| ATCAACTGCTGATCCGATAA+CGG | - | chr1_1:63041503-63041522 | None:intergenic | 40.0% | |
| TTATCGGATCAGCAGTTGAT+GGG | + | chr1_1:63041503-63041522 | Msa0035030:CDS | 40.0% | |
| GGATGCTTTATCTCAAGGAA+TGG | + | chr1_1:63041562-63041581 | Msa0035030:CDS | 40.0% | |
| TGGAAATGTTGCTGAGTACA+TGG | + | chr1_1:63041637-63041656 | Msa0035030:CDS | 40.0% | |
| GGAAATGTTGCTGAGTACAT+GGG | + | chr1_1:63041638-63041657 | Msa0035030:CDS | 40.0% | |
| TTTCTTAGGCTGATCTCTTG+AGG | + | chr1_1:63041814-63041833 | Msa0035030:intron | 40.0% | |
| GCATAACTAGTGTGTAGTGT+AGG | + | chr1_1:63041984-63042003 | Msa0035030:three_prime_UTR | 40.0% | |
| TTCAGCTTCTTCTTCAGGCA+TGG | + | chr1_1:63039321-63039340 | Msa0035030:CDS | 45.0% | |
| AGTGTTTATCCACCGTGTCT+TGG | + | chr1_1:63039503-63039522 | Msa0035030:intron | 45.0% | |
| AACACCATTGCACCAAGACA+CGG | - | chr1_1:63039518-63039537 | None:intergenic | 45.0% | |
| ! | GTGCAATGGTGTTGGAAATG+TGG | + | chr1_1:63039525-63039544 | Msa0035030:CDS | 45.0% |
| ! | CCAGCTCCATGTTCTTTTTC+GGG | + | chr1_1:63039900-63039919 | Msa0035030:intron | 45.0% |
| ACACTCTTGCCTTATGTCCT+TGG | - | chr1_1:63040015-63040034 | None:intergenic | 45.0% | |
| GCTTCAACAAGTACGTCAAC+AGG | + | chr1_1:63040453-63040472 | Msa0035030:intron | 45.0% | |
| GCAACAAATGCACCCTATAG+GGG | - | chr1_1:63040572-63040591 | None:intergenic | 45.0% | |
| ! | TAGGGTGCATTTGTTGCAAC+CGG | + | chr1_1:63040575-63040594 | Msa0035030:intron | 45.0% |
| ATTGAATGACCATGATCCGC+TGG | - | chr1_1:63040605-63040624 | None:intergenic | 45.0% | |
| ! | CCATGTTTCTACCACTGTGA+AGG | - | chr1_1:63040677-63040696 | None:intergenic | 45.0% |
| CCTTCACAGTGGTAGAAACA+TGG | + | chr1_1:63040674-63040693 | Msa0035030:intron | 45.0% | |
| ! | GTTGAAGAGCATAGCTGCAA+AGG | + | chr1_1:63041083-63041102 | Msa0035030:CDS | 45.0% |
| CCGTTCTTCCGAACTTCTTA+AGG | + | chr1_1:63041179-63041198 | Msa0035030:CDS | 45.0% | |
| AAACCACCTTGAGCCGTTAT+CGG | + | chr1_1:63041487-63041506 | Msa0035030:CDS | 45.0% | |
| GTTATCGGATCAGCAGTTGA+TGG | + | chr1_1:63041502-63041521 | Msa0035030:CDS | 45.0% | |
| ! | TATCGGATCAGCAGTTGATG+GGG | + | chr1_1:63041504-63041523 | Msa0035030:CDS | 45.0% |
| GCTGAGGATGCTTTATCTCA+AGG | + | chr1_1:63041557-63041576 | Msa0035030:CDS | 45.0% | |
| ATTTCCAGATCCAGTGGATG+TGG | - | chr1_1:63041624-63041643 | None:intergenic | 45.0% | |
| AGCAACATTTCCAGATCCAG+TGG | - | chr1_1:63041630-63041649 | None:intergenic | 45.0% | |
| ! | GTGTCTTGGTGCAATGGTGT+TGG | + | chr1_1:63039517-63039536 | Msa0035030:CDS | 50.0% |
| GGGTCAATCTGATGAGCACA+AGG | + | chr1_1:63039588-63039607 | Msa0035030:CDS | 50.0% | |
| GTGAGGCTGCAAGGAAAAGT+AGG | + | chr1_1:63039749-63039768 | Msa0035030:CDS | 50.0% | |
| CCCGAAAAAGAACATGGAGC+TGG | - | chr1_1:63039903-63039922 | None:intergenic | 50.0% | |
| ! | AGATGTTTCATGTGGCTCGG+TGG | + | chr1_1:63041153-63041172 | Msa0035030:CDS | 50.0% |
| GCATTCTTCTCAGCAAGCTG+AGG | + | chr1_1:63041541-63041560 | Msa0035030:CDS | 50.0% | |
| ACACTATCCTCCACATCCAC+TGG | + | chr1_1:63041611-63041630 | Msa0035030:CDS | 50.0% | |
| TGCTGAGTACATGGGCCAAA+TGG | + | chr1_1:63041646-63041665 | Msa0035030:CDS | 50.0% | |
| TGGCCATTGCAAGAGCCATT+TGG | - | chr1_1:63041664-63041683 | None:intergenic | 50.0% | |
| AGTCTCTAGTGTGGCAAGCT+TGG | - | chr1_1:63041684-63041703 | None:intergenic | 50.0% | |
| ! | TCCACCGTGTCTTGGTGCAA+TGG | + | chr1_1:63039511-63039530 | Msa0035030:CDS | 55.0% |
| ACCATTGCACCAAGACACGG+TGG | - | chr1_1:63039515-63039534 | None:intergenic | 55.0% | |
| TCGGCTGATGCAGAATCGTG+AGG | + | chr1_1:63039732-63039751 | Msa0035030:CDS | 55.0% | |
| TGCAGAATCGTGAGGCTGCA+AGG | + | chr1_1:63039740-63039759 | Msa0035030:CDS | 55.0% | |
| TGTTGCAACCGGAGTTCCAG+CGG | + | chr1_1:63040586-63040605 | Msa0035030:CDS | 55.0% | |
| ACCATGATCCGCTGGAACTC+CGG | - | chr1_1:63040597-63040616 | None:intergenic | 55.0% | |
| ! | GATCCGATAACGGCTCAAGG+TGG | - | chr1_1:63041493-63041512 | None:intergenic | 55.0% |
| ! | GCTGATCCGATAACGGCTCA+AGG | - | chr1_1:63041496-63041515 | None:intergenic | 55.0% |
| TCCTCCACATCCACTGGATC+TGG | + | chr1_1:63041617-63041636 | Msa0035030:CDS | 55.0% | |
| TCCAGATCCAGTGGATGTGG+AGG | - | chr1_1:63041621-63041640 | None:intergenic | 55.0% | |
| GGGCCAAATGGCTCTTGCAA+TGG | + | chr1_1:63041658-63041677 | Msa0035030:CDS | 55.0% | |
| ACCGGAGTTCCAGCGGATCA+TGG | + | chr1_1:63040593-63040612 | Msa0035030:CDS | 60.0% | |
| ! | CAAGGAGAGCGCGAGCAGCT+TGG | - | chr1_1:63041881-63041900 | None:intergenic | 65.0% |
| !! | AGCGCGAGCAGCTTGGTGCG+CGG | - | chr1_1:63041874-63041893 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 63039163 | 63042181 | 63039163 | ID=Msa0035030;Name=Msa0035030 |
| chr1_1 | mRNA | 63039163 | 63042181 | 63039163 | ID=Msa0035030-mRNA-1;Parent=Msa0035030;Name=Msa0035030-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.75|0.44|1|0.87|0.88|9|210|334 |
| chr1_1 | exon | 63039163 | 63039234 | 63039163 | ID=Msa0035030-mRNA-1:exon:20013;Parent=Msa0035030-mRNA-1 |
| chr1_1 | exon | 63039313 | 63039411 | 63039313 | ID=Msa0035030-mRNA-1:exon:20014;Parent=Msa0035030-mRNA-1 |
| chr1_1 | exon | 63039505 | 63039609 | 63039505 | ID=Msa0035030-mRNA-1:exon:20015;Parent=Msa0035030-mRNA-1 |
| chr1_1 | exon | 63039724 | 63039783 | 63039724 | ID=Msa0035030-mRNA-1:exon:20016;Parent=Msa0035030-mRNA-1 |
| chr1_1 | exon | 63040397 | 63040462 | 63040397 | ID=Msa0035030-mRNA-1:exon:20017;Parent=Msa0035030-mRNA-1 |
| chr1_1 | exon | 63040578 | 63040644 | 63040578 | ID=Msa0035030-mRNA-1:exon:20018;Parent=Msa0035030-mRNA-1 |
| chr1_1 | exon | 63041052 | 63041200 | 63041052 | ID=Msa0035030-mRNA-1:exon:20019;Parent=Msa0035030-mRNA-1 |
| chr1_1 | exon | 63041479 | 63041715 | 63041479 | ID=Msa0035030-mRNA-1:exon:20020;Parent=Msa0035030-mRNA-1 |
| chr1_1 | exon | 63041822 | 63042181 | 63041822 | ID=Msa0035030-mRNA-1:exon:20021;Parent=Msa0035030-mRNA-1 |
| chr1_1 | CDS | 63039163 | 63039234 | 63039163 | ID=Msa0035030-mRNA-1:cds;Parent=Msa0035030-mRNA-1 |
| chr1_1 | CDS | 63039313 | 63039411 | 63039313 | ID=Msa0035030-mRNA-1:cds;Parent=Msa0035030-mRNA-1 |
| chr1_1 | CDS | 63039505 | 63039609 | 63039505 | ID=Msa0035030-mRNA-1:cds;Parent=Msa0035030-mRNA-1 |
| chr1_1 | CDS | 63039724 | 63039783 | 63039724 | ID=Msa0035030-mRNA-1:cds;Parent=Msa0035030-mRNA-1 |
| chr1_1 | CDS | 63040397 | 63040462 | 63040397 | ID=Msa0035030-mRNA-1:cds;Parent=Msa0035030-mRNA-1 |
| chr1_1 | CDS | 63040578 | 63040644 | 63040578 | ID=Msa0035030-mRNA-1:cds;Parent=Msa0035030-mRNA-1 |
| chr1_1 | CDS | 63041052 | 63041200 | 63041052 | ID=Msa0035030-mRNA-1:cds;Parent=Msa0035030-mRNA-1 |
| chr1_1 | CDS | 63041479 | 63041715 | 63041479 | ID=Msa0035030-mRNA-1:cds;Parent=Msa0035030-mRNA-1 |
| chr1_1 | CDS | 63041822 | 63041971 | 63041822 | ID=Msa0035030-mRNA-1:cds;Parent=Msa0035030-mRNA-1 |
| chr1_1 | three_prime_UTR | 63041972 | 63042181 | 63041972 | ID=Msa0035030-mRNA-1:three_prime_utr;Parent=Msa0035030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
