Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137790 | sp|P23923|HBP1B_WHEAT | 56.609 | 348 | 87 | 10 | 34 | 333 | 1 | 332 | 7.61e-114 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137790 | A0A072VS38 | 76.435 | 331 | 36 | 3 | 34 | 327 | 1 | 326 | 6.01e-155 | 460 |
| Msa0137790 | A0A072VS38 | 78.811 | 387 | 24 | 4 | 1 | 334 | 327 | 708 | 0.0 | 568 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0137790 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035030 | Msa0137790 | 0.897472 | 1.360167e-76 | -8.615850e-47 |
| Msa0090160 | Msa0137790 | 0.891865 | 2.688985e-74 | -8.615850e-47 |
| Msa0137790 | Msa1345930 | 0.897080 | 1.988213e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137790 | MtrunA17_Chr1g0210151 | 79.191 | 346 | 22 | 3 | 34 | 334 | 1 | 341 | 0.0 | 512 |
| Msa0137790 | MtrunA17_Chr8g0353501 | 56.647 | 346 | 90 | 9 | 34 | 333 | 135 | 466 | 1.10e-116 | 345 |
| Msa0137790 | MtrunA17_Chr5g0422771 | 50.990 | 404 | 121 | 11 | 5 | 333 | 63 | 464 | 1.77e-116 | 344 |
| Msa0137790 | MtrunA17_Chr7g0256211 | 57.878 | 311 | 76 | 6 | 76 | 333 | 144 | 452 | 6.34e-114 | 337 |
| Msa0137790 | MtrunA17_Chr7g0258321 | 46.130 | 323 | 116 | 7 | 69 | 333 | 141 | 463 | 5.93e-88 | 271 |
| Msa0137790 | MtrunA17_Chr1g0174701 | 42.222 | 360 | 156 | 5 | 23 | 333 | 150 | 506 | 1.58e-87 | 271 |
| Msa0137790 | MtrunA17_Chr3g0093451 | 69.000 | 200 | 10 | 4 | 57 | 204 | 10 | 209 | 5.47e-86 | 258 |
| Msa0137790 | MtrunA17_Chr2g0321431 | 46.643 | 283 | 103 | 3 | 92 | 333 | 194 | 469 | 1.09e-81 | 256 |
| Msa0137790 | MtrunA17_Chr3g0124601 | 48.601 | 286 | 100 | 5 | 92 | 333 | 79 | 361 | 2.52e-81 | 251 |
| Msa0137790 | MtrunA17_Chr4g0026401 | 46.048 | 291 | 116 | 5 | 79 | 333 | 176 | 461 | 2.15e-78 | 248 |
| Msa0137790 | MtrunA17_Chr8g0382861 | 43.007 | 286 | 117 | 4 | 91 | 333 | 74 | 356 | 1.03e-71 | 226 |
| Msa0137790 | MtrunA17_Chr3g0115371 | 40.594 | 303 | 127 | 5 | 77 | 331 | 50 | 347 | 1.46e-65 | 211 |
| Msa0137790 | MtrunA17_Chr5g0424861 | 42.807 | 285 | 111 | 6 | 92 | 329 | 67 | 346 | 1.16e-59 | 195 |
| Msa0137790 | MtrunA17_Chr5g0424851 | 45.029 | 171 | 92 | 1 | 159 | 329 | 53 | 221 | 1.66e-41 | 149 |
| Msa0137790 | MtrunA17_Chr5g0424851 | 41.718 | 163 | 92 | 1 | 159 | 321 | 267 | 426 | 3.13e-36 | 135 |
| Msa0137790 | MtrunA17_Chr1g0196951 | 33.146 | 178 | 90 | 6 | 145 | 315 | 74 | 229 | 9.46e-17 | 78.6 |
| Msa0137790 | MtrunA17_Chr2g0315631 | 27.027 | 185 | 101 | 3 | 158 | 322 | 39 | 209 | 3.41e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137790 | AT1G68640.1 | 57.593 | 349 | 91 | 6 | 30 | 333 | 116 | 452 | 1.29e-109 | 327 |
| Msa0137790 | AT5G06950.2 | 57.006 | 314 | 83 | 8 | 68 | 333 | 21 | 330 | 9.26e-107 | 315 |
| Msa0137790 | AT5G06950.4 | 57.006 | 314 | 83 | 8 | 68 | 333 | 21 | 330 | 9.26e-107 | 315 |
| Msa0137790 | AT5G06950.1 | 57.006 | 314 | 83 | 8 | 68 | 333 | 21 | 330 | 9.26e-107 | 315 |
| Msa0137790 | AT5G06950.5 | 57.006 | 314 | 83 | 8 | 68 | 333 | 21 | 330 | 9.26e-107 | 315 |
| Msa0137790 | AT5G06950.3 | 57.006 | 314 | 83 | 8 | 68 | 333 | 21 | 330 | 9.26e-107 | 315 |
| Msa0137790 | AT3G12250.6 | 51.304 | 345 | 108 | 6 | 34 | 333 | 1 | 330 | 1.87e-105 | 312 |
| Msa0137790 | AT3G12250.2 | 51.304 | 345 | 108 | 6 | 34 | 333 | 1 | 330 | 1.87e-105 | 312 |
| Msa0137790 | AT3G12250.7 | 51.304 | 345 | 108 | 6 | 34 | 333 | 1 | 330 | 1.87e-105 | 312 |
| Msa0137790 | AT3G12250.1 | 51.304 | 345 | 108 | 6 | 34 | 333 | 1 | 330 | 1.87e-105 | 312 |
| Msa0137790 | AT3G12250.4 | 50.000 | 360 | 115 | 7 | 34 | 333 | 1 | 355 | 7.72e-104 | 309 |
| Msa0137790 | AT3G12250.5 | 55.629 | 302 | 84 | 5 | 77 | 333 | 7 | 303 | 1.24e-103 | 306 |
| Msa0137790 | AT3G12250.3 | 55.629 | 302 | 84 | 5 | 77 | 333 | 28 | 324 | 2.25e-103 | 306 |
| Msa0137790 | AT5G06960.2 | 55.363 | 289 | 82 | 4 | 90 | 333 | 44 | 330 | 1.21e-98 | 295 |
| Msa0137790 | AT5G06960.1 | 55.363 | 289 | 82 | 4 | 90 | 333 | 44 | 330 | 1.21e-98 | 295 |
| Msa0137790 | AT5G06960.3 | 55.363 | 289 | 82 | 4 | 90 | 333 | 24 | 310 | 1.74e-98 | 293 |
| Msa0137790 | AT1G08320.2 | 49.662 | 296 | 105 | 5 | 77 | 333 | 39 | 329 | 3.59e-91 | 276 |
| Msa0137790 | AT1G08320.5 | 49.662 | 296 | 105 | 5 | 77 | 333 | 39 | 329 | 3.59e-91 | 276 |
| Msa0137790 | AT1G08320.1 | 49.662 | 296 | 105 | 5 | 77 | 333 | 163 | 453 | 1.70e-89 | 276 |
| Msa0137790 | AT1G08320.4 | 49.662 | 296 | 105 | 5 | 77 | 333 | 163 | 453 | 1.70e-89 | 276 |
| Msa0137790 | AT1G08320.3 | 49.662 | 296 | 105 | 5 | 77 | 333 | 163 | 453 | 1.70e-89 | 276 |
| Msa0137790 | AT5G10030.5 | 47.735 | 287 | 101 | 4 | 92 | 333 | 80 | 362 | 1.79e-81 | 252 |
| Msa0137790 | AT5G10030.3 | 47.735 | 287 | 101 | 4 | 92 | 333 | 80 | 362 | 1.79e-81 | 252 |
| Msa0137790 | AT5G10030.1 | 47.735 | 287 | 101 | 4 | 92 | 333 | 80 | 362 | 1.79e-81 | 252 |
| Msa0137790 | AT5G10030.4 | 47.735 | 287 | 101 | 4 | 92 | 333 | 80 | 362 | 1.79e-81 | 252 |
| Msa0137790 | AT5G10030.2 | 47.735 | 287 | 101 | 4 | 92 | 333 | 80 | 362 | 1.79e-81 | 252 |
| Msa0137790 | AT1G77920.1 | 43.605 | 344 | 151 | 8 | 27 | 333 | 29 | 366 | 6.27e-79 | 246 |
| Msa0137790 | AT5G65210.6 | 46.207 | 290 | 101 | 5 | 92 | 333 | 14 | 296 | 1.53e-77 | 239 |
| Msa0137790 | AT5G06839.2 | 42.810 | 306 | 114 | 5 | 87 | 333 | 113 | 416 | 3.32e-77 | 243 |
| Msa0137790 | AT5G06839.3 | 37.113 | 388 | 180 | 6 | 2 | 333 | 79 | 458 | 3.56e-77 | 244 |
| Msa0137790 | AT5G06839.1 | 43.234 | 303 | 116 | 4 | 87 | 333 | 113 | 415 | 4.05e-77 | 243 |
| Msa0137790 | AT5G65210.5 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 5.08e-77 | 241 |
| Msa0137790 | AT5G65210.7 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 5.08e-77 | 241 |
| Msa0137790 | AT5G65210.3 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 5.08e-77 | 241 |
| Msa0137790 | AT5G65210.1 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 5.08e-77 | 241 |
| Msa0137790 | AT5G65210.2 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 5.08e-77 | 241 |
| Msa0137790 | AT5G65210.4 | 46.207 | 290 | 101 | 5 | 92 | 333 | 84 | 366 | 5.08e-77 | 241 |
| Msa0137790 | AT1G22070.1 | 46.875 | 288 | 106 | 4 | 92 | 334 | 98 | 383 | 8.10e-76 | 238 |
Find 77 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGTATTTCACATACTTTC+TGG | 0.133806 | 1_3:-70411719 | Msa0137790:CDS |
| TTCGAGCTCTTAATTCATTA+TGG | 0.231768 | 1_3:-70410907 | Msa0137790:CDS |
| ATTGTTGGAAATAGTAATTC+AGG | 0.251776 | 1_3:-70412204 | Msa0137790:intron |
| CAATTCCTTTAGTATTCTTT+AGG | 0.266207 | 1_3:+70410875 | None:intergenic |
| GAAAAGTAGGTTAAGGAAAA+AGG | 0.288507 | 1_3:-70413065 | Msa0137790:intron |
| CCGTTCTTCCGAACTTCTTA+AGG | 0.301460 | 1_3:-70411648 | Msa0137790:intron |
| ATGTATTTCACATACTTTCT+GGG | 0.339033 | 1_3:-70411718 | Msa0137790:CDS |
| AAACCACCTTGAGCCGTTAT+CGG | 0.365933 | 1_3:-70411345 | Msa0137790:CDS |
| CTTAGTCTTGCATTGATCCT+TGG | 0.372651 | 1_3:+70413261 | None:intergenic |
| TCATATTCAGGCTATGTGTT+TGG | 0.384585 | 1_3:-70413700 | None:intergenic |
| ATTGGTTCAGCTTCTTCTTC+AGG | 0.387251 | 1_3:-70413511 | Msa0137790:CDS |
| TGGCCATTGCAAGAGCCATT+TGG | 0.388199 | 1_3:+70411171 | None:intergenic |
| TTCACATACTTTCTGGGTTG+TGG | 0.392509 | 1_3:-70411712 | Msa0137790:CDS |
| ACCATGATCCGCTGGAACTC+CGG | 0.404015 | 1_3:+70412233 | None:intergenic |
| TCCTCCACATCCACTGGATC+TGG | 0.420633 | 1_3:-70411215 | Msa0137790:CDS |
| GATCATGGTCATTCAATTGT+TGG | 0.432278 | 1_3:-70412219 | Msa0137790:CDS |
| TAGGGTGCATTTGTTGCAAC+CGG | 0.435060 | 1_3:-70412252 | Msa0137790:CDS |
| CAAAATCACCTTAAGAAGTT+CGG | 0.438279 | 1_3:+70411640 | None:intergenic |
| ACTAGAGACTTTCATTCATC+AGG | 0.451246 | 1_3:-70411138 | Msa0137790:intron |
| AGTGTTTATCCACCGTGTCT+TGG | 0.455646 | 1_3:-70413324 | Msa0137790:CDS |
| TGTGAATATCATCACATTCA+AGG | 0.465804 | 1_3:-70410714 | Msa0137790:three_prime_UTR |
| AGTCTCTAGTGTGGCAAGCT+TGG | 0.468295 | 1_3:+70411151 | None:intergenic |
| GTTGCAAGTAACTTGCAGTA+TGG | 0.469501 | 1_3:-70413652 | Msa0137790:CDS |
| TTCAGCTTCTTCTTCAGGCA+TGG | 0.471184 | 1_3:-70413506 | Msa0137790:CDS |
| CAAGGATCAATGCAAGACTA+AGG | 0.474390 | 1_3:-70413260 | Msa0137790:CDS |
| ATAGGCATATGTGCAACAAT+TGG | 0.478088 | 1_3:-70412434 | Msa0137790:intron |
| TGGAAATGTTGCTGAGTACA+TGG | 0.493141 | 1_3:-70411195 | Msa0137790:CDS |
| CAAGGAGAGCGCGAGCAGCT+TGG | 0.498749 | 1_3:+70410954 | None:intergenic |
| ATCAACTGCTGATCCGATAA+CGG | 0.503931 | 1_3:+70411332 | None:intergenic |
| AATTGGAGAACAGTCGACTT+AGG | 0.507628 | 1_3:-70412417 | Msa0137790:CDS |
| TTTCTTAGGCTGATCTCTTG+AGG | 0.513370 | 1_3:-70411018 | Msa0137790:intron |
| GTGAATATCATCACATTCAA+GGG | 0.518441 | 1_3:-70410713 | Msa0137790:three_prime_UTR |
| ACCGGAGTTCCAGCGGATCA+TGG | 0.518939 | 1_3:-70412234 | Msa0137790:CDS |
| TTATCGGATCAGCAGTTGAT+GGG | 0.521698 | 1_3:-70411329 | Msa0137790:CDS |
| ATTTCCAGATCCAGTGGATG+TGG | 0.524593 | 1_3:+70411211 | None:intergenic |
| CATGTCCTAAAGAATACTAA+AGG | 0.527396 | 1_3:-70410880 | Msa0137790:exon |
| ACACTATCCTCCACATCCAC+TGG | 0.532462 | 1_3:-70411221 | Msa0137790:CDS |
| CACATGAAACATCTTTCTGC+AGG | 0.533251 | 1_3:+70411683 | None:intergenic |
| CTGCAAGGAAAAGTAGGTTA+AGG | 0.538526 | 1_3:-70413072 | Msa0137790:CDS |
| TGCTGAGTACATGGGCCAAA+TGG | 0.539603 | 1_3:-70411186 | Msa0137790:CDS |
| CCTTAAGAAGTTCGGAAGAA+CGG | 0.540585 | 1_3:+70411648 | None:intergenic |
| GTTATCGGATCAGCAGTTGA+TGG | 0.541892 | 1_3:-70411330 | Msa0137790:CDS |
| TCCACCGTGTCTTGGTGCAA+TGG | 0.545619 | 1_3:-70413316 | Msa0137790:CDS |
| TCTTGTAGTTGTTGAATCCA+AGG | 0.547828 | 1_3:-70413278 | Msa0137790:CDS |
| GTTGAAGAGCATAGCTGCAA+AGG | 0.551361 | 1_3:-70411744 | Msa0137790:CDS |
| GTGCAATGGTGTTGGAAATG+AGG | 0.552383 | 1_3:-70413302 | Msa0137790:CDS |
| GGGCCAAATGGCTCTTGCAA+TGG | 0.552891 | 1_3:-70411174 | Msa0137790:CDS |
| GTGAGGCTGCAAGGAAAAGT+AGG | 0.555483 | 1_3:-70413078 | Msa0137790:CDS |
| TGCAGAATCGTGAGGCTGCA+AGG | 0.558257 | 1_3:-70413087 | Msa0137790:CDS |
| AGCGCGAGCAGCTTGGTGCG+CGG | 0.560510 | 1_3:+70410961 | None:intergenic |
| ACTAGTACATATCAATATGT+AGG | 0.562068 | 1_3:+70410768 | None:intergenic |
| GCTGAGGATGCTTTATCTCA+AGG | 0.575247 | 1_3:-70411275 | Msa0137790:CDS |
| ATTGAATGACCATGATCCGC+TGG | 0.583662 | 1_3:+70412225 | None:intergenic |
| GCTGATCCGATAACGGCTCA+AGG | 0.599388 | 1_3:+70411339 | None:intergenic |
| GGATGCTTTATCTCAAGGAA+TGG | 0.606203 | 1_3:-70411270 | Msa0137790:CDS |
| TTGTGTATTGTATAGAACAT+TGG | 0.607394 | 1_3:-70413529 | Msa0137790:intron |
| TGTTGCAACCGGAGTTCCAG+CGG | 0.611050 | 1_3:-70412241 | Msa0137790:CDS |
| GTGTCTTGGTGCAATGGTGT+TGG | 0.611763 | 1_3:-70413310 | Msa0137790:CDS |
| AGCAACATTTCCAGATCCAG+TGG | 0.612783 | 1_3:+70411205 | None:intergenic |
| AAGGATCAATGCAAGACTAA+GGG | 0.612820 | 1_3:-70413259 | Msa0137790:CDS |
| GCATAACTAGTGTGTAGTGT+AGG | 0.616189 | 1_3:-70410848 | Msa0137790:three_prime_UTR |
| GAAAGATGTTTCATGTGGCT+CGG | 0.616317 | 1_3:-70411677 | Msa0137790:CDS |
| GCATTCTTCTCAGCAAGCTG+AGG | 0.619429 | 1_3:-70411291 | Msa0137790:CDS |
| TCCAGATCCAGTGGATGTGG+AGG | 0.620584 | 1_3:+70411214 | None:intergenic |
| AACACCATTGCACCAAGACA+CGG | 0.624897 | 1_3:+70413312 | None:intergenic |
| AAATGAAATCATTTATGACA+AGG | 0.642100 | 1_3:+70410936 | None:intergenic |
| AGATGTTTCATGTGGCTCGG+TGG | 0.642187 | 1_3:-70411674 | Msa0137790:CDS |
| GGGTCAATCTGATGAGCACA+AGG | 0.645680 | 1_3:-70413239 | Msa0137790:intron |
| TATCGGATCAGCAGTTGATG+GGG | 0.649177 | 1_3:-70411328 | Msa0137790:CDS |
| ATGGCAATTAGTTTCAAGCG+TGG | 0.657689 | 1_3:+70410670 | None:intergenic |
| TGAATATCATCACATTCAAG+GGG | 0.658475 | 1_3:-70410712 | Msa0137790:three_prime_UTR |
| TCGGCTGATGCAGAATCGTG+AGG | 0.665525 | 1_3:-70413095 | Msa0137790:CDS |
| CTGCAGAAAGATGTTTCATG+TGG | 0.677608 | 1_3:-70411682 | Msa0137790:CDS |
| GGAAATGTTGCTGAGTACAT+GGG | 0.694330 | 1_3:-70411194 | Msa0137790:CDS |
| ATGAATGAAAGTCTCTAGTG+TGG | 0.704515 | 1_3:+70411142 | None:intergenic |
| ACCATTGCACCAAGACACGG+TGG | 0.708421 | 1_3:+70413315 | None:intergenic |
| GATCCGATAACGGCTCAAGG+TGG | 0.733902 | 1_3:+70411342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAATTTAAATTTGAAT+TGG | + | chr1_3:70411192-70411211 | None:intergenic | 10.0% |
| !!! | TAAAATAGAAATTGTATTTT+GGG | - | chr1_3:70412837-70412856 | Msa0137790:intron | 10.0% |
| !! | TTACTGATACATTTATTTAT+GGG | - | chr1_3:70411221-70411240 | Msa0137790:CDS | 15.0% |
| !!! | TACTGATAAAACATTTTAAT+TGG | - | chr1_3:70411811-70411830 | Msa0137790:intron | 15.0% |
| !!! | TGCATTTTACAAATTAATTA+TGG | - | chr1_3:70412396-70412415 | Msa0137790:CDS | 15.0% |
| !!! | GTAAAATAGAAATTGTATTT+TGG | - | chr1_3:70412836-70412855 | Msa0137790:intron | 15.0% |
| !! | AAGTAATTAACTAACTTAAA+TGG | - | chr1_3:70412916-70412935 | Msa0137790:intron | 15.0% |
| !! | TACATAGATATTGAAATAGT+GGG | + | chr1_3:70410977-70410996 | None:intergenic | 20.0% |
| !! | ATACATAGATATTGAAATAG+TGG | + | chr1_3:70410978-70410997 | None:intergenic | 20.0% |
| !! | GTTACTGATACATTTATTTA+TGG | - | chr1_3:70411220-70411239 | Msa0137790:CDS | 20.0% |
| !!! | GTATATTTTAATCTGTCAAA+GGG | - | chr1_3:70411707-70411726 | Msa0137790:CDS | 20.0% |
| !!! | TATATGTTTTGGTTTTGAAT+AGG | - | chr1_3:70411909-70411928 | Msa0137790:intron | 20.0% |
| !!! | AACTTCAAAGATTTTTCATT+TGG | - | chr1_3:70412016-70412035 | Msa0137790:intron | 20.0% |
| !!! | GATTTTTCATTTGGTAAAAT+TGG | - | chr1_3:70412025-70412044 | Msa0137790:intron | 20.0% |
| !! | TAGGAAAGATTATTATAAAG+TGG | - | chr1_3:70412865-70412884 | Msa0137790:intron | 20.0% |
| !! | TATTATAAAGTGGTTATATC+AGG | - | chr1_3:70412875-70412894 | Msa0137790:intron | 20.0% |
| !!! | TACTTAGTTTGTTAGTATAT+AGG | + | chr1_3:70412901-70412920 | None:intergenic | 20.0% |
| !! | AAATGAAATCATTTATGACA+AGG | + | chr1_3:70413428-70413447 | None:intergenic | 20.0% |
| ! | TTGTGTATTGTATAGAACAT+TGG | - | chr1_3:70410832-70410851 | Msa0137790:three_prime_UTR | 25.0% |
| ! | TGGATAAACACTGAAAAATA+AGG | + | chr1_3:70411029-70411048 | None:intergenic | 25.0% |
| !!! | TTTATGGGTTACATTTTCTT+AGG | - | chr1_3:70411236-70411255 | Msa0137790:CDS | 25.0% |
| !! | AACCTTCTGAAAAATTGTTA+TGG | - | chr1_3:70411523-70411542 | Msa0137790:intron | 25.0% |
| !!! | TGATCATCTAATTTGACTTT+TGG | - | chr1_3:70411622-70411641 | Msa0137790:intron | 25.0% |
| !!! | GATCATCTAATTTGACTTTT+GGG | - | chr1_3:70411623-70411642 | Msa0137790:intron | 25.0% |
| !!! | GGTATATTTTAATCTGTCAA+AGG | - | chr1_3:70411706-70411725 | Msa0137790:CDS | 25.0% |
| !!! | TGAAAAATCTTTGAAGTTGT+TGG | + | chr1_3:70412014-70412033 | None:intergenic | 25.0% |
| !!! | CATTCTACTTATTTTTTCCA+TGG | - | chr1_3:70412071-70412090 | Msa0137790:intron | 25.0% |
| ! | ATTGTTGGAAATAGTAATTC+AGG | - | chr1_3:70412157-70412176 | Msa0137790:intron | 25.0% |
| !!! | ATGAAGTATTTTAAACCTTC+AGG | - | chr1_3:70412441-70412460 | Msa0137790:intron | 25.0% |
| ! | ATCAGCTATAAATTCTCAAA+TGG | - | chr1_3:70412533-70412552 | Msa0137790:intron | 25.0% |
| ! | TCAGCTATAAATTCTCAAAT+GGG | - | chr1_3:70412534-70412553 | Msa0137790:intron | 25.0% |
| ! | ATGTATTTCACATACTTTCT+GGG | - | chr1_3:70412643-70412662 | Msa0137790:intron | 25.0% |
| !!! | ATTTTAGTGTTAAGCTAAGA+TGG | + | chr1_3:70412757-70412776 | None:intergenic | 25.0% |
| !!! | AATTGTATTTTGGGATGAAT+AGG | - | chr1_3:70412846-70412865 | Msa0137790:intron | 25.0% |
| !!! | TTGTGAACATTGTTTTTCTT+AGG | - | chr1_3:70413329-70413348 | Msa0137790:intron | 25.0% |
| ! | CAATTCCTTTAGTATTCTTT+AGG | + | chr1_3:70413489-70413508 | None:intergenic | 25.0% |
| ! | ATCAGTAGTTAAGAAAAACA+AGG | + | chr1_3:70413566-70413585 | None:intergenic | 25.0% |
| ! | ACTAGTACATATCAATATGT+AGG | + | chr1_3:70413596-70413615 | None:intergenic | 25.0% |
| ACACAACATTGAATCAGATA+AGG | + | chr1_3:70410818-70410837 | None:intergenic | 30.0% | |
| TACATTTGATGTATGAAGAG+TGG | - | chr1_3:70410997-70411016 | Msa0137790:CDS | 30.0% | |
| GAAAAGTAGGTTAAGGAAAA+AGG | - | chr1_3:70411296-70411315 | Msa0137790:CDS | 30.0% | |
| AAGACAAATCATAAGTTAGG+AGG | + | chr1_3:70411335-70411354 | None:intergenic | 30.0% | |
| CACAAGACAAATCATAAGTT+AGG | + | chr1_3:70411338-70411357 | None:intergenic | 30.0% | |
| !!! | TCTAATTTGACTTTTGGGAT+TGG | - | chr1_3:70411628-70411647 | Msa0137790:intron | 30.0% |
| AGATTAAAATATACCAGAGC+AGG | + | chr1_3:70411701-70411720 | None:intergenic | 30.0% | |
| TAATTGGACCTTTCTCTAAT+AGG | - | chr1_3:70411827-70411846 | Msa0137790:intron | 30.0% | |
| ! | CTGGACTAAGTTATATGTTT+TGG | - | chr1_3:70411898-70411917 | Msa0137790:intron | 30.0% |
| TCCTTAGAACTAATCATTCT+TGG | - | chr1_3:70412311-70412330 | Msa0137790:intron | 30.0% | |
| !! | ACCAAGAATGATTAGTTCTA+AGG | + | chr1_3:70412315-70412334 | None:intergenic | 30.0% |
| GCAACAAAATAGATGATCAA+TGG | - | chr1_3:70412337-70412356 | Msa0137790:intron | 30.0% | |
| AATGGACACTTAAATTCATG+CGG | - | chr1_3:70412355-70412374 | Msa0137790:intron | 30.0% | |
| GATGTATTTCACATACTTTC+TGG | - | chr1_3:70412642-70412661 | Msa0137790:intron | 30.0% | |
| CAAAATCACCTTAAGAAGTT+CGG | + | chr1_3:70412724-70412743 | None:intergenic | 30.0% | |
| ! | GTGAAAAGTTTCAAAAGTGT+CGG | - | chr1_3:70412810-70412829 | Msa0137790:intron | 30.0% |
| ATGAAAAAACAAATGCGAAG+AGG | + | chr1_3:70412976-70412995 | None:intergenic | 30.0% | |
| TGATCACACTCAATTAATTG+TGG | + | chr1_3:70413298-70413317 | None:intergenic | 30.0% | |
| TTCGAGCTCTTAATTCATTA+TGG | - | chr1_3:70413454-70413473 | Msa0137790:CDS | 30.0% | |
| CATGTCCTAAAGAATACTAA+AGG | - | chr1_3:70413481-70413500 | Msa0137790:CDS | 30.0% | |
| TGTGAATATCATCACATTCA+AGG | - | chr1_3:70413647-70413666 | Msa0137790:CDS | 30.0% | |
| GTGAATATCATCACATTCAA+GGG | - | chr1_3:70413648-70413667 | Msa0137790:CDS | 30.0% | |
| TGAATATCATCACATTCAAG+GGG | - | chr1_3:70413649-70413668 | Msa0137790:CDS | 30.0% | |
| AAAGACGGTTGAAATGTACT+TGG | + | chr1_3:70410945-70410964 | None:intergenic | 35.0% | |
| AGTGGGAAAAGATCAAAAGA+CGG | + | chr1_3:70410960-70410979 | None:intergenic | 35.0% | |
| TCTTGTAGTTGTTGAATCCA+AGG | - | chr1_3:70411083-70411102 | Msa0137790:intron | 35.0% | |
| AAGGATCAATGCAAGACTAA+GGG | - | chr1_3:70411102-70411121 | Msa0137790:intron | 35.0% | |
| GCACAAAGTCACAATAAAAG+TGG | + | chr1_3:70411166-70411185 | None:intergenic | 35.0% | |
| AGTTAACCCGAAAAAGAACA+TGG | + | chr1_3:70411443-70411462 | None:intergenic | 35.0% | |
| !! | GGCCATAACAATTTTTCAGA+AGG | + | chr1_3:70411528-70411547 | None:intergenic | 35.0% |
| CTGAAAAATTGTTATGGCCA+AGG | - | chr1_3:70411529-70411548 | Msa0137790:intron | 35.0% | |
| !!! | ATTTTGTTTTCTTCCTGCTC+TGG | - | chr1_3:70411685-70411704 | Msa0137790:CDS | 35.0% |
| GATGTCTTCCTATTAGAGAA+AGG | + | chr1_3:70411838-70411857 | None:intergenic | 35.0% | |
| TTCGTACGATATAGCATTAC+TGG | - | chr1_3:70411879-70411898 | Msa0137790:intron | 35.0% | |
| ATAGGCATATGTGCAACAAT+TGG | - | chr1_3:70411927-70411946 | Msa0137790:intron | 35.0% | |
| GATCATGGTCATTCAATTGT+TGG | - | chr1_3:70412142-70412161 | Msa0137790:intron | 35.0% | |
| TGTGAAGGAAATGAAACTCA+AGG | + | chr1_3:70412196-70412215 | None:intergenic | 35.0% | |
| AGGTGCATTAGCATTTGATA+TGG | - | chr1_3:70412461-70412480 | Msa0137790:intron | 35.0% | |
| ! | TTGATATGGATTATGCTCGT+TGG | - | chr1_3:70412475-70412494 | Msa0137790:intron | 35.0% |
| ! | TGATATGGATTATGCTCGTT+GGG | - | chr1_3:70412476-70412495 | Msa0137790:intron | 35.0% |
| AAAAACAAATGCGAAGAGGA+AGG | + | chr1_3:70412972-70412991 | None:intergenic | 35.0% | |
| ATGAATGAAAGTCTCTAGTG+TGG | + | chr1_3:70413222-70413241 | None:intergenic | 35.0% | |
| ACTAGAGACTTTCATTCATC+AGG | - | chr1_3:70413223-70413242 | Msa0137790:intron | 35.0% | |
| ! | GTTGCAAGTAACTTGCAGTA+TGG | - | chr1_3:70410709-70410728 | Msa0137790:three_prime_UTR | 40.0% |
| ! | ATTGGTTCAGCTTCTTCTTC+AGG | - | chr1_3:70410850-70410869 | Msa0137790:three_prime_UTR | 40.0% |
| !! | CTTAGTCTTGCATTGATCCT+TGG | + | chr1_3:70411103-70411122 | None:intergenic | 40.0% |
| CAAGGATCAATGCAAGACTA+AGG | - | chr1_3:70411101-70411120 | Msa0137790:intron | 40.0% | |
| ! | CATTTTCTTAGGCTCTTCGT+CGG | - | chr1_3:70411247-70411266 | Msa0137790:CDS | 40.0% |
| CTGCAAGGAAAAGTAGGTTA+AGG | - | chr1_3:70411289-70411308 | Msa0137790:CDS | 40.0% | |
| ! | TCCAGCTCCATGTTCTTTTT+CGG | - | chr1_3:70411433-70411452 | Msa0137790:intron | 40.0% |
| TTGTTATGGCCAAGGACATA+AGG | - | chr1_3:70411537-70411556 | Msa0137790:intron | 40.0% | |
| ! | AATTGGAGAACAGTCGACTT+AGG | - | chr1_3:70411944-70411963 | Msa0137790:intron | 40.0% |
| TATAGGGGAAAAGCAATCCA+TGG | + | chr1_3:70412091-70412110 | None:intergenic | 40.0% | |
| !! | ATGGATTGCTTTTCCCCTAT+AGG | - | chr1_3:70412090-70412109 | Msa0137790:intron | 40.0% |
| !! | TGGATTGCTTTTCCCCTATA+GGG | - | chr1_3:70412091-70412110 | Msa0137790:intron | 40.0% |
| TGCAACAAATGCACCCTATA+GGG | + | chr1_3:70412107-70412126 | None:intergenic | 40.0% | |
| TTGCAACAAATGCACCCTAT+AGG | + | chr1_3:70412108-70412127 | None:intergenic | 40.0% | |
| GAGTTTCATTTCCTTCACAG+TGG | - | chr1_3:70412197-70412216 | Msa0137790:intron | 40.0% | |
| TCAAATGCTAATGCACCTGA+AGG | + | chr1_3:70412459-70412478 | None:intergenic | 40.0% | |
| GAACTGCATCTTCTTGTTGA+AGG | - | chr1_3:70412564-70412583 | Msa0137790:intron | 40.0% | |
| TTCACATACTTTCTGGGTTG+TGG | - | chr1_3:70412649-70412668 | Msa0137790:intron | 40.0% | |
| CACATGAAACATCTTTCTGC+AGG | + | chr1_3:70412681-70412700 | None:intergenic | 40.0% | |
| CTGCAGAAAGATGTTTCATG+TGG | - | chr1_3:70412679-70412698 | Msa0137790:intron | 40.0% | |
| GAAAGATGTTTCATGTGGCT+CGG | - | chr1_3:70412684-70412703 | Msa0137790:intron | 40.0% | |
| CCTTAAGAAGTTCGGAAGAA+CGG | + | chr1_3:70412716-70412735 | None:intergenic | 40.0% | |
| ATCAACTGCTGATCCGATAA+CGG | + | chr1_3:70413032-70413051 | None:intergenic | 40.0% | |
| TTATCGGATCAGCAGTTGAT+GGG | - | chr1_3:70413032-70413051 | Msa0137790:intron | 40.0% | |
| GGATGCTTTATCTCAAGGAA+TGG | - | chr1_3:70413091-70413110 | Msa0137790:CDS | 40.0% | |
| TGGAAATGTTGCTGAGTACA+TGG | - | chr1_3:70413166-70413185 | Msa0137790:intron | 40.0% | |
| GGAAATGTTGCTGAGTACAT+GGG | - | chr1_3:70413167-70413186 | Msa0137790:intron | 40.0% | |
| TTTCTTAGGCTGATCTCTTG+AGG | - | chr1_3:70413343-70413362 | Msa0137790:intron | 40.0% | |
| GCATAACTAGTGTGTAGTGT+AGG | - | chr1_3:70413513-70413532 | Msa0137790:CDS | 40.0% | |
| TTCAGCTTCTTCTTCAGGCA+TGG | - | chr1_3:70410855-70410874 | Msa0137790:three_prime_UTR | 45.0% | |
| AGTGTTTATCCACCGTGTCT+TGG | - | chr1_3:70411037-70411056 | Msa0137790:intron | 45.0% | |
| AACACCATTGCACCAAGACA+CGG | + | chr1_3:70411052-70411071 | None:intergenic | 45.0% | |
| ! | GTGCAATGGTGTTGGAAATG+AGG | - | chr1_3:70411059-70411078 | Msa0137790:intron | 45.0% |
| ! | CCAGCTCCATGTTCTTTTTC+GGG | - | chr1_3:70411434-70411453 | Msa0137790:intron | 45.0% |
| ACACTCTTGCCTTATGTCCT+TGG | + | chr1_3:70411549-70411568 | None:intergenic | 45.0% | |
| GCTTCAACAAGTACGTCAAC+AGG | - | chr1_3:70411987-70412006 | Msa0137790:intron | 45.0% | |
| GCAACAAATGCACCCTATAG+GGG | + | chr1_3:70412106-70412125 | None:intergenic | 45.0% | |
| ! | TAGGGTGCATTTGTTGCAAC+CGG | - | chr1_3:70412109-70412128 | Msa0137790:intron | 45.0% |
| ATTGAATGACCATGATCCGC+TGG | + | chr1_3:70412139-70412158 | None:intergenic | 45.0% | |
| ! | CCATGTTTCTACCACTGTGA+AGG | + | chr1_3:70412211-70412230 | None:intergenic | 45.0% |
| CCTTCACAGTGGTAGAAACA+TGG | - | chr1_3:70412208-70412227 | Msa0137790:CDS | 45.0% | |
| ! | TATGGATTATGCTCGTTGGG+TGG | - | chr1_3:70412479-70412498 | Msa0137790:intron | 45.0% |
| ! | GTTGAAGAGCATAGCTGCAA+AGG | - | chr1_3:70412617-70412636 | Msa0137790:intron | 45.0% |
| CCGTTCTTCCGAACTTCTTA+AGG | - | chr1_3:70412713-70412732 | Msa0137790:intron | 45.0% | |
| AAACCACCTTGAGCCGTTAT+CGG | - | chr1_3:70413016-70413035 | Msa0137790:intron | 45.0% | |
| GTTATCGGATCAGCAGTTGA+TGG | - | chr1_3:70413031-70413050 | Msa0137790:intron | 45.0% | |
| ! | TATCGGATCAGCAGTTGATG+GGG | - | chr1_3:70413033-70413052 | Msa0137790:intron | 45.0% |
| GCTGAGGATGCTTTATCTCA+AGG | - | chr1_3:70413086-70413105 | Msa0137790:CDS | 45.0% | |
| ATTTCCAGATCCAGTGGATG+TGG | + | chr1_3:70413153-70413172 | None:intergenic | 45.0% | |
| AGCAACATTTCCAGATCCAG+TGG | + | chr1_3:70413159-70413178 | None:intergenic | 45.0% | |
| ! | GTGTCTTGGTGCAATGGTGT+TGG | - | chr1_3:70411051-70411070 | Msa0137790:intron | 50.0% |
| GGGTCAATCTGATGAGCACA+AGG | - | chr1_3:70411122-70411141 | Msa0137790:intron | 50.0% | |
| GTGAGGCTGCAAGGAAAAGT+AGG | - | chr1_3:70411283-70411302 | Msa0137790:CDS | 50.0% | |
| CCCGAAAAAGAACATGGAGC+TGG | + | chr1_3:70411437-70411456 | None:intergenic | 50.0% | |
| ! | AGATGTTTCATGTGGCTCGG+TGG | - | chr1_3:70412687-70412706 | Msa0137790:intron | 50.0% |
| GCATTCTTCTCAGCAAGCTG+AGG | - | chr1_3:70413070-70413089 | Msa0137790:CDS | 50.0% | |
| ACACTATCCTCCACATCCAC+TGG | - | chr1_3:70413140-70413159 | Msa0137790:intron | 50.0% | |
| TGCTGAGTACATGGGCCAAA+TGG | - | chr1_3:70413175-70413194 | Msa0137790:intron | 50.0% | |
| TGGCCATTGCAAGAGCCATT+TGG | + | chr1_3:70413193-70413212 | None:intergenic | 50.0% | |
| AGTCTCTAGTGTGGCAAGCT+TGG | + | chr1_3:70413213-70413232 | None:intergenic | 50.0% | |
| ! | TCCACCGTGTCTTGGTGCAA+TGG | - | chr1_3:70411045-70411064 | Msa0137790:intron | 55.0% |
| ACCATTGCACCAAGACACGG+TGG | + | chr1_3:70411049-70411068 | None:intergenic | 55.0% | |
| TCGGCTGATGCAGAATCGTG+AGG | - | chr1_3:70411266-70411285 | Msa0137790:CDS | 55.0% | |
| TGCAGAATCGTGAGGCTGCA+AGG | - | chr1_3:70411274-70411293 | Msa0137790:CDS | 55.0% | |
| TGTTGCAACCGGAGTTCCAG+CGG | - | chr1_3:70412120-70412139 | Msa0137790:intron | 55.0% | |
| ACCATGATCCGCTGGAACTC+CGG | + | chr1_3:70412131-70412150 | None:intergenic | 55.0% | |
| ! | GATCCGATAACGGCTCAAGG+TGG | + | chr1_3:70413022-70413041 | None:intergenic | 55.0% |
| ! | GCTGATCCGATAACGGCTCA+AGG | + | chr1_3:70413025-70413044 | None:intergenic | 55.0% |
| TCCTCCACATCCACTGGATC+TGG | - | chr1_3:70413146-70413165 | Msa0137790:intron | 55.0% | |
| TCCAGATCCAGTGGATGTGG+AGG | + | chr1_3:70413150-70413169 | None:intergenic | 55.0% | |
| GGGCCAAATGGCTCTTGCAA+TGG | - | chr1_3:70413187-70413206 | Msa0137790:intron | 55.0% | |
| ACCGGAGTTCCAGCGGATCA+TGG | - | chr1_3:70412127-70412146 | Msa0137790:intron | 60.0% | |
| ! | CAAGGAGAGCGCGAGCAGCT+TGG | + | chr1_3:70413410-70413429 | None:intergenic | 65.0% |
| !! | AGCGCGAGCAGCTTGGTGCG+CGG | + | chr1_3:70413403-70413422 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 70410673 | 70413710 | 70410673 | ID=Msa0137790;Name=Msa0137790 |
| chr1_3 | mRNA | 70410673 | 70413710 | 70410673 | ID=Msa0137790-mRNA-1;Parent=Msa0137790;Name=Msa0137790-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.75|0.44|1|0.87|0.77|9|210|334 |
| chr1_3 | exon | 70410673 | 70411032 | 70410673 | ID=Msa0137790-mRNA-1:exon:24438;Parent=Msa0137790-mRNA-1 |
| chr1_3 | exon | 70411139 | 70411375 | 70411139 | ID=Msa0137790-mRNA-1:exon:24437;Parent=Msa0137790-mRNA-1 |
| chr1_3 | exon | 70411649 | 70411797 | 70411649 | ID=Msa0137790-mRNA-1:exon:24436;Parent=Msa0137790-mRNA-1 |
| chr1_3 | exon | 70412205 | 70412271 | 70412205 | ID=Msa0137790-mRNA-1:exon:24435;Parent=Msa0137790-mRNA-1 |
| chr1_3 | exon | 70412387 | 70412452 | 70412387 | ID=Msa0137790-mRNA-1:exon:24434;Parent=Msa0137790-mRNA-1 |
| chr1_3 | exon | 70413066 | 70413125 | 70413066 | ID=Msa0137790-mRNA-1:exon:24433;Parent=Msa0137790-mRNA-1 |
| chr1_3 | exon | 70413240 | 70413344 | 70413240 | ID=Msa0137790-mRNA-1:exon:24432;Parent=Msa0137790-mRNA-1 |
| chr1_3 | exon | 70413438 | 70413536 | 70413438 | ID=Msa0137790-mRNA-1:exon:24431;Parent=Msa0137790-mRNA-1 |
| chr1_3 | exon | 70413639 | 70413710 | 70413639 | ID=Msa0137790-mRNA-1:exon:24430;Parent=Msa0137790-mRNA-1 |
| chr1_3 | CDS | 70413639 | 70413710 | 70413639 | ID=Msa0137790-mRNA-1:cds;Parent=Msa0137790-mRNA-1 |
| chr1_3 | CDS | 70413438 | 70413536 | 70413438 | ID=Msa0137790-mRNA-1:cds;Parent=Msa0137790-mRNA-1 |
| chr1_3 | CDS | 70413240 | 70413344 | 70413240 | ID=Msa0137790-mRNA-1:cds;Parent=Msa0137790-mRNA-1 |
| chr1_3 | CDS | 70413066 | 70413125 | 70413066 | ID=Msa0137790-mRNA-1:cds;Parent=Msa0137790-mRNA-1 |
| chr1_3 | CDS | 70412387 | 70412452 | 70412387 | ID=Msa0137790-mRNA-1:cds;Parent=Msa0137790-mRNA-1 |
| chr1_3 | CDS | 70412205 | 70412271 | 70412205 | ID=Msa0137790-mRNA-1:cds;Parent=Msa0137790-mRNA-1 |
| chr1_3 | CDS | 70411649 | 70411797 | 70411649 | ID=Msa0137790-mRNA-1:cds;Parent=Msa0137790-mRNA-1 |
| chr1_3 | CDS | 70411139 | 70411375 | 70411139 | ID=Msa0137790-mRNA-1:cds;Parent=Msa0137790-mRNA-1 |
| chr1_3 | CDS | 70410883 | 70411032 | 70410883 | ID=Msa0137790-mRNA-1:cds;Parent=Msa0137790-mRNA-1 |
| chr1_3 | three_prime_UTR | 70410673 | 70410882 | 70410673 | ID=Msa0137790-mRNA-1:three_prime_utr;Parent=Msa0137790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
