AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038260 MtrunA17_Chr1g0201751 76.233 223 14 1 15 198 21 243 4.47e-90 264
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038260 AT5G44080.1 36.604 265 80 10 3 198 70 315 1.74e-37 132
Msa0038260 AT1G03970.1 38.389 211 97 6 16 198 65 270 7.27e-29 108

Find 122 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGTGGGAAATAATAAAA+TGG 0.217623 1_1:-67654747 Msa0038260:three_prime_UTR
ACACTTCCTCCAAATATATT+AGG 0.308552 1_1:+67654007 None:intergenic
TTAGTGAGATGCTATTATTT+AGG 0.331677 1_1:-67654459 Msa0038260:three_prime_UTR
GAAGATGACGATTCCGTTAT+CGG 0.332969 1_1:-67658919 Msa0038260:CDS
GATTAGATACAACTTTGTTT+TGG 0.340810 1_1:-67654106 Msa0038260:three_prime_UTR
CAAGGAATTGAAAACGTTGA+TGG 0.345371 1_1:-67658852 Msa0038260:CDS
GATTTGATCGTCGAGGAAAT+TGG 0.346078 1_1:+67659124 None:intergenic
AACGTTGATGGGTCGGTGAT+AGG 0.356163 1_1:-67658840 Msa0038260:CDS
GATGGGTCGGTGATAGGGTT+TGG 0.356739 1_1:-67658834 Msa0038260:CDS
CGGTGATAGGGTTTGGGAAT+GGG 0.358384 1_1:-67658827 Msa0038260:CDS
CTCGAACCGTCGACGATGTC+TGG 0.371504 1_1:-67659076 Msa0038260:CDS
ATGGGTCGGTGATAGGGTTT+GGG 0.380377 1_1:-67658833 Msa0038260:CDS
GGCCTTCGCTGCTCCACAAC+AGG 0.380747 1_1:+67654845 None:intergenic
TTAGGCTTATCAAGTGGAAT+TGG 0.384866 1_1:-67658404 Msa0038260:intron
ATGGCAATGGGAATGTGAAT+GGG 0.390238 1_1:-67658797 Msa0038260:CDS
ATTTCTTATGTACTCCATTC+AGG 0.390544 1_1:+67654640 None:intergenic
TGTGCAGGCTGAGAGGAAAA+AGG 0.400339 1_1:-67657417 Msa0038260:intron
TGAGGATGAGGAGGAGGGTG+AGG 0.414838 1_1:-67658946 Msa0038260:CDS
TAGTCTTGTTGAGGATGTTA+AGG 0.418993 1_1:-67654253 Msa0038260:three_prime_UTR
TCGGTGATAGGGTTTGGGAA+TGG 0.430970 1_1:-67658828 Msa0038260:CDS
GAATGTGAATGGGGTGGAAA+TGG 0.432712 1_1:-67658787 Msa0038260:intron
ATTGTGGGAAATAATAAAAT+GGG 0.433816 1_1:-67654746 Msa0038260:three_prime_UTR
GCGGTGGTGAAGTGAGGTTT+AGG 0.434316 1_1:+67659146 None:intergenic
AATGGCAATGGGAATGTGAA+TGG 0.440487 1_1:-67658798 Msa0038260:CDS
CAGTGGTAGATCATATTTGC+TGG 0.440876 1_1:-67654791 Msa0038260:exon
TAGGGTTTGGGAATGGGAAT+GGG 0.448106 1_1:-67658821 Msa0038260:CDS
ATGGGAATGGGAATGGCAAT+GGG 0.449145 1_1:-67658809 Msa0038260:CDS
TTGCATGAGGAAGGTAGAAT+AGG 0.460116 1_1:-67654218 Msa0038260:three_prime_UTR
AATGGGAATGGGAATGGCAA+TGG 0.463203 1_1:-67658810 Msa0038260:CDS
CCACTGAGCGTCTCCGATAA+CGG 0.464675 1_1:+67658906 None:intergenic
TGCGGTTGAGGATGAGGAGG+AGG 0.464821 1_1:-67658952 Msa0038260:CDS
ATAGGGTTTGGGAATGGGAA+TGG 0.466638 1_1:-67658822 Msa0038260:CDS
GGTTAATGATAAGAGATAGA+AGG 0.467437 1_1:-67654671 Msa0038260:three_prime_UTR
ACGTTGATGGGTCGGTGATA+GGG 0.467935 1_1:-67658839 Msa0038260:CDS
TCAAGTGGAATTGGAGTCCT+TGG 0.472571 1_1:-67658395 Msa0038260:CDS
AGATGGAGAAGAAGGTGGAT+CGG 0.476558 1_1:+67659169 None:intergenic
TAAAAGCAGAATTGTGAAGT+TGG 0.484596 1_1:-67654594 Msa0038260:three_prime_UTR
ATGTGCTAGTAGAGGGCAAA+GGG 0.484672 1_1:-67654514 Msa0038260:three_prime_UTR
TGTGAAAGCTGGTGCGGTTG+AGG 0.485583 1_1:-67658964 Msa0038260:CDS
GGTTTAGGAGATGGAGAAGA+AGG 0.490179 1_1:+67659161 None:intergenic
AGCACATTTGCAGTCTGCAC+AGG 0.493719 1_1:+67654530 None:intergenic
TGACAAGTTGATGAAGGAAA+AGG 0.495815 1_1:-67658350 Msa0038260:intron
GTGAAGTGAGGTTTAGGAGA+TGG 0.499875 1_1:+67659152 None:intergenic
TCGAGGAGTGGCGACGGCGT+CGG 0.506745 1_1:+67659094 None:intergenic
TTTGGGAATGGGAATGGGAA+TGG 0.507407 1_1:-67658816 Msa0038260:CDS
GGAAAATGACAAGTTGATGA+AGG 0.507651 1_1:-67658356 Msa0038260:CDS
AGCTGGTGCGGTTGAGGATG+AGG 0.510481 1_1:-67658958 Msa0038260:CDS
TGAAATAGTTTGCATGAGGA+AGG 0.512588 1_1:-67654227 Msa0038260:three_prime_UTR
GCGATGTGATCTCCGGCGAT+AGG 0.515092 1_1:-67659037 Msa0038260:CDS
TTCTTTACACTCCCTATCGC+CGG 0.515808 1_1:+67659025 None:intergenic
ATTTATCTTACTTTGACCAC+TGG 0.518168 1_1:-67654287 Msa0038260:three_prime_UTR
GAGTGGCGACGGCGTCGGCG+AGG 0.520677 1_1:+67659099 None:intergenic
AAGGAATTGAAAACGTTGAT+GGG 0.523079 1_1:-67658851 Msa0038260:CDS
CGATGTGATCTCCGGCGATA+GGG 0.523997 1_1:-67659036 Msa0038260:CDS
TCGGAGACGCTCAGTGGTAG+TGG 0.524000 1_1:-67658900 Msa0038260:CDS
GTCTGCACAGGGGTGAGACC+AGG 0.526399 1_1:+67654542 None:intergenic
GTCGCCGGCGATGTGATCTC+CGG 0.529993 1_1:-67659044 Msa0038260:CDS
AGAAGGAATCAGTACCTGAA+TGG 0.529994 1_1:-67654654 Msa0038260:three_prime_UTR
GAAGAAGGTGGATCGGAAGA+AGG 0.530586 1_1:+67659176 None:intergenic
TTAGGAGATGGAGAAGAAGG+TGG 0.530669 1_1:+67659164 None:intergenic
TAGATACAATGTAGGCATCC+TGG 0.531044 1_1:-67654560 Msa0038260:three_prime_UTR
TGGCAATGGGAATGTGAATG+GGG 0.531390 1_1:-67658796 Msa0038260:CDS
ATCAAAATAGTTAGTCTCAA+GGG 0.531521 1_1:-67654701 Msa0038260:three_prime_UTR
AATCAAAATAGTTAGTCTCA+AGG 0.538063 1_1:-67654702 Msa0038260:three_prime_UTR
CTCCTCTAGCTTCACCGCCA+AGG 0.538630 1_1:+67658378 None:intergenic
GTGCTCTTGTAGTCTTGTTG+AGG 0.541304 1_1:-67654262 Msa0038260:three_prime_UTR
AAATTGGCGGTGGTGAAGTG+AGG 0.542267 1_1:+67659140 None:intergenic
GCCGCCACGGTTACTCCGTA+GGG 0.544674 1_1:-67654825 Msa0038260:CDS
TATCTTACTTTGACCACTGG+TGG 0.545885 1_1:-67654284 Msa0038260:three_prime_UTR
GCGGTTGAGGATGAGGAGGA+GGG 0.553341 1_1:-67658951 Msa0038260:CDS
CGATGAGATGATGACGCTGG+AGG 0.560524 1_1:-67658994 Msa0038260:CDS
TCTGTCGAAATTCTGCTGCT+AGG 0.562774 1_1:+67654138 None:intergenic
TTCCTGTTGTGGAGCAGCGA+AGG 0.563922 1_1:-67654847 Msa0038260:CDS
GGCCGCCACGGTTACTCCGT+AGG 0.566727 1_1:-67654826 Msa0038260:CDS
ATCGTCGAGGAAATTGGCGG+TGG 0.569885 1_1:+67659130 None:intergenic
CTCCAGCGTCATCATCTCAT+CGG 0.572527 1_1:+67658995 None:intergenic
AGTGGCGACGGCGTCGGCGA+GGG 0.573280 1_1:+67659100 None:intergenic
ATCGTCGACGGTTCGAGGAG+TGG 0.573362 1_1:+67659082 None:intergenic
AGATGTGAACTGAAGATTGT+GGG 0.576025 1_1:-67654761 Msa0038260:three_prime_UTR
CAGACATCGTCGACGGTTCG+AGG 0.576404 1_1:+67659077 None:intergenic
GCACATTTGCAGTCTGCACA+GGG 0.576824 1_1:+67654531 None:intergenic
TAATATATTTGGAGGAAGTG+TGG 0.577323 1_1:-67654005 Msa0038260:three_prime_UTR
GACTGCAAATGTGCTAGTAG+AGG 0.577729 1_1:-67654522 Msa0038260:three_prime_UTR
GACGGTTCGAGGAGTGGCGA+CGG 0.580962 1_1:+67659088 None:intergenic
AGCAGAATTTCGACAGACAA+AGG 0.584150 1_1:-67654132 Msa0038260:three_prime_UTR
AATTGAAAACGTTGATGGGT+CGG 0.585668 1_1:-67658847 Msa0038260:CDS
GTCTGGCGAGAGATCGTCGC+CGG 0.590254 1_1:-67659059 Msa0038260:CDS
ACTGACATGTGGAGATGCCT+TGG 0.591692 1_1:-67654355 Msa0038260:three_prime_UTR
GTTGTGAAATAGTTTGCATG+AGG 0.601381 1_1:-67654231 Msa0038260:three_prime_UTR
TTGATCGTCGAGGAAATTGG+CGG 0.607652 1_1:+67659127 None:intergenic
GCATCTCCACATGTCAGTGA+TGG 0.607945 1_1:+67654360 None:intergenic
ACTGCAAATGTGCTAGTAGA+GGG 0.608591 1_1:-67654521 Msa0038260:three_prime_UTR
ATCGCCGGAGATCACATCGC+CGG 0.608850 1_1:+67659040 None:intergenic
TTCCGATGAGATGATGACGC+TGG 0.609887 1_1:-67658997 Msa0038260:CDS
CTCTCGCCAGACATCGTCGA+CGG 0.611545 1_1:+67659070 None:intergenic
CAATGGGAATGTGAATGGGG+TGG 0.612710 1_1:-67658793 Msa0038260:CDS
TGGAGCAGCGAAGGCCGCCA+CGG 0.612735 1_1:-67654838 Msa0038260:CDS
ATGTAGTTTAGATACAATGT+AGG 0.614808 1_1:-67654568 Msa0038260:three_prime_UTR
GTAGGGTTCGCTCCTTGCAG+TGG 0.618144 1_1:-67654808 Msa0038260:CDS
AGTGGAATTGGAGTCCTTGG+CGG 0.619638 1_1:-67658392 Msa0038260:CDS
GTCCTTGGCGGTGAAGCTAG+AGG 0.622234 1_1:-67658380 Msa0038260:CDS
TACATTGTATCTAAACTACA+TGG 0.630821 1_1:+67654570 None:intergenic
CCGTTATCGGAGACGCTCAG+TGG 0.634758 1_1:-67658906 Msa0038260:CDS
ATATTCTTGTGCAGGCTGAG+AGG 0.635094 1_1:-67657424 Msa0038260:intron
AATGTGCTAGTAGAGGGCAA+AGG 0.636434 1_1:-67654515 Msa0038260:three_prime_UTR
AAATATGATCTACCACTGCA+AGG 0.655779 1_1:+67654796 None:intergenic
GTTAGTCTCAAGGGTAACTG+TGG 0.658223 1_1:-67654692 Msa0038260:three_prime_UTR
TATTAACCATCACTGACATG+TGG 0.659157 1_1:-67654366 Msa0038260:three_prime_UTR
AAGATGTGAACTGAAGATTG+TGG 0.663194 1_1:-67654762 Msa0038260:three_prime_UTR
GACTACAAGAGCACCACCAG+TGG 0.664023 1_1:+67654271 None:intergenic
TGGTGCGGTTGAGGATGAGG+AGG 0.665882 1_1:-67658955 Msa0038260:CDS
TGGTAGATCATATTTGCTGG+TGG 0.666125 1_1:-67654788 Msa0038260:exon
CGAGGGAGATTTGATCGTCG+AGG 0.673387 1_1:+67659117 None:intergenic
ACTGCAAGGAGCGAACCCTA+CGG 0.673999 1_1:+67654810 None:intergenic
ACGACTATATGATGTAGTCA+CGG 0.675264 1_1:-67654483 Msa0038260:three_prime_UTR
CAAGCACAGAAGTTTCAAGA+CGG 0.681774 1_1:+67654401 None:intergenic
CAGTACAACTAAATTTACCA+AGG 0.691069 1_1:+67654338 None:intergenic
CTTGGCGGTGAAGCTAGAGG+AGG 0.703301 1_1:-67658377 Msa0038260:CDS
CGAACCCTACGGAGTAACCG+TGG 0.709737 1_1:+67654821 None:intergenic
TGTGCTAGTAGAGGGCAAAG+GGG 0.714313 1_1:-67654513 Msa0038260:three_prime_UTR
CACATTTGCAGTCTGCACAG+GGG 0.730816 1_1:+67654532 None:intergenic
ACCCTACGGAGTAACCGTGG+CGG 0.761547 1_1:+67654824 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAATACTATAGAAA+AGG + chr1_1:67656078-67656097 None:intergenic 10.0%
!!! AATAATTTTTAACTCATTTT+GGG + chr1_1:67657433-67657452 None:intergenic 10.0%
!!! TAATAATTTTTAACTCATTT+TGG + chr1_1:67657434-67657453 None:intergenic 10.0%
!! AAAATGAGTTAAAAATTATT+AGG - chr1_1:67657433-67657452 Msa0038260:intron 10.0%
!! TAAAAATTATTAGGTTATAA+AGG - chr1_1:67657442-67657461 Msa0038260:intron 10.0%
!! AAATAATATGTATAAATAAC+AGG + chr1_1:67657935-67657954 None:intergenic 10.0%
!! TGAAAGAAAAAATATTTAAA+GGG + chr1_1:67657977-67657996 None:intergenic 10.0%
!!! ATTTTTTTACCTAATATATT+TGG - chr1_1:67659162-67659181 Msa0038260:CDS 10.0%
!!! ATTTTGACATTTCATAAATT+AGG - chr1_1:67655184-67655203 Msa0038260:intron 15.0%
!!! TTTTGACATTTCATAAATTA+GGG - chr1_1:67655185-67655204 Msa0038260:intron 15.0%
!! TCATGATATCAATAATTTAT+AGG - chr1_1:67656333-67656352 Msa0038260:intron 15.0%
!! CATGATATCAATAATTTATA+GGG - chr1_1:67656334-67656353 Msa0038260:intron 15.0%
!!! ATTTTTTTAATGAATTTCCT+TGG - chr1_1:67656608-67656627 Msa0038260:intron 15.0%
!!! ATAATTTTTAACTCATTTTG+GGG + chr1_1:67657432-67657451 None:intergenic 15.0%
!! ATGTGAAATATAGAATTAAA+TGG - chr1_1:67657694-67657713 Msa0038260:intron 15.0%
!! CTGAAAGAAAAAATATTTAA+AGG + chr1_1:67657978-67657997 None:intergenic 15.0%
!!! GCTGATTTATAAAAAAATTG+CGG + chr1_1:67654873-67654892 None:intergenic 20.0%
!! ATTATAGTAAATTTCCGAAA+TGG - chr1_1:67654940-67654959 Msa0038260:intron 20.0%
!! TGTTTGAAAAAAAAAACAGA+AGG + chr1_1:67655438-67655457 None:intergenic 20.0%
!! CAAATATATAAAAACAAGCA+TGG + chr1_1:67655607-67655626 None:intergenic 20.0%
!!! CATGCTTGTTTTTATATATT+TGG - chr1_1:67655605-67655624 Msa0038260:intron 20.0%
!!! TATATATTTGGAATGTTTCT+TGG - chr1_1:67655617-67655636 Msa0038260:intron 20.0%
!! TCTAAATCTGAAAATTCAAA+GGG + chr1_1:67655692-67655711 None:intergenic 20.0%
!!! TATTTTATGCTATTGTTTGT+TGG - chr1_1:67655809-67655828 Msa0038260:intron 20.0%
!! AAAACACTTAAAAATGAACT+GGG + chr1_1:67656120-67656139 None:intergenic 20.0%
!! AAAAACACTTAAAAATGAAC+TGG + chr1_1:67656121-67656140 None:intergenic 20.0%
!! TGAAAAGGATCTTATATTAA+GGG + chr1_1:67656204-67656223 None:intergenic 20.0%
!! TTGAAAAGGATCTTATATTA+AGG + chr1_1:67656205-67656224 None:intergenic 20.0%
!!! ATGCATATAGAATTTTGAAA+AGG + chr1_1:67656219-67656238 None:intergenic 20.0%
!! TACATTGTGTTTATAAATCA+CGG - chr1_1:67656928-67656947 Msa0038260:intron 20.0%
!! ACACAAAACTAAAAAAACAA+CGG + chr1_1:67657361-67657380 None:intergenic 20.0%
!! TCAAGATTCATAATTAACAA+TGG + chr1_1:67657484-67657503 None:intergenic 20.0%
!! TAATTCTGTCAAATAGTTAA+AGG - chr1_1:67657634-67657653 Msa0038260:intron 20.0%
!!! ATAATGGAAAATCAAGAATA+GGG - chr1_1:67658102-67658121 Msa0038260:intron 20.0%
!! TATCTCTTAAATCTTTGAAT+CGG + chr1_1:67658136-67658155 None:intergenic 20.0%
!! ATTGTGGGAAATAATAAAAT+GGG - chr1_1:67658432-67658451 Msa0038260:intron 20.0%
!!! TTTTTACCTAATATATTTGG+AGG - chr1_1:67659165-67659184 Msa0038260:CDS 20.0%
!!! TTTTGGTTTTGTGTGATTTT+AGG - chr1_1:67654756-67654775 Msa0038260:three_prime_UTR 25.0%
!! CTCTATTTAAACTTTGTTGT+CGG - chr1_1:67655010-67655029 Msa0038260:intron 25.0%
! TTCTAAACTATCATCAATAG+AGG + chr1_1:67655104-67655123 None:intergenic 25.0%
! AAACAGAAGGATTTCAATAA+TGG + chr1_1:67655425-67655444 None:intergenic 25.0%
!! CACAAATAGAATGAGATTTT+AGG + chr1_1:67655541-67655560 None:intergenic 25.0%
! CTCTAAATCTGAAAATTCAA+AGG + chr1_1:67655693-67655712 None:intergenic 25.0%
! AATATTATCTGTTAGATGTC+AGG + chr1_1:67655739-67655758 None:intergenic 25.0%
!!! TATTGTTTGTTGGTTTGTTT+TGG - chr1_1:67655819-67655838 Msa0038260:intron 25.0%
! CAGTTATATTGTTTACCAAA+AGG + chr1_1:67655846-67655865 None:intergenic 25.0%
! AAACACTTAAAAATGAACTG+GGG + chr1_1:67656119-67656138 None:intergenic 25.0%
! TATTAAGGGACAATAAAAAG+TGG + chr1_1:67656190-67656209 None:intergenic 25.0%
!! AAAGTTTTTCACAAATACCA+AGG + chr1_1:67656628-67656647 None:intergenic 25.0%
! AAACCAACACTTAAAAGAAA+TGG - chr1_1:67656648-67656667 Msa0038260:intron 25.0%
!!! TGTTAGAATTTTTTATACCC+TGG + chr1_1:67656741-67656760 None:intergenic 25.0%
! TATAAACACAATGTAATTGC+AGG + chr1_1:67656923-67656942 None:intergenic 25.0%
! TTACTATCAATTAGTATGCT+TGG - chr1_1:67657088-67657107 Msa0038260:intron 25.0%
! TACTATCAATTAGTATGCTT+GGG - chr1_1:67657089-67657108 Msa0038260:intron 25.0%
! TTAGGTTATAAAGGTAGATT+TGG - chr1_1:67657451-67657470 Msa0038260:intron 25.0%
! TAGGTTATAAAGGTAGATTT+GGG - chr1_1:67657452-67657471 Msa0038260:intron 25.0%
!!! TTTTGTAGTGTGTTTTAACA+TGG + chr1_1:67657830-67657849 None:intergenic 25.0%
!! TAATTTTTGACACACTAGTA+TGG - chr1_1:67657867-67657886 Msa0038260:intron 25.0%
! TACACATATAGTACATTGTA+GGG + chr1_1:67658026-67658045 None:intergenic 25.0%
!!! GATAATGGAAAATCAAGAAT+AGG - chr1_1:67658101-67658120 Msa0038260:intron 25.0%
! AGAGATACAAAAGAATAGTT+TGG - chr1_1:67658149-67658168 Msa0038260:intron 25.0%
! ATAGATAGCTAACATCTATT+AGG + chr1_1:67658255-67658274 None:intergenic 25.0%
!!! TTTTATTTGTGTGTAGCTTA+TGG - chr1_1:67658299-67658318 Msa0038260:intron 25.0%
! GATTGTGGGAAATAATAAAA+TGG - chr1_1:67658431-67658450 Msa0038260:intron 25.0%
!! AATCAAAATAGTTAGTCTCA+AGG - chr1_1:67658476-67658495 Msa0038260:intron 25.0%
!! ATCAAAATAGTTAGTCTCAA+GGG - chr1_1:67658477-67658496 Msa0038260:intron 25.0%
!! AATGTCTTTTGCTCATTTTA+TGG - chr1_1:67658558-67658577 Msa0038260:intron 25.0%
! TACATTGTATCTAAACTACA+TGG + chr1_1:67658611-67658630 None:intergenic 25.0%
! ATGTAGTTTAGATACAATGT+AGG - chr1_1:67658610-67658629 Msa0038260:intron 25.0%
! TTAGTGAGATGCTATTATTT+AGG - chr1_1:67658719-67658738 Msa0038260:intron 25.0%
!!! GATTAGATACAACTTTGTTT+TGG - chr1_1:67659072-67659091 Msa0038260:CDS 25.0%
AAGGAATTGAAAACGTTGAT+GGG - chr1_1:67654327-67654346 Msa0038260:three_prime_UTR 30.0%
GTCTGATATGTTATGATACA+CGG - chr1_1:67654559-67654578 Msa0038260:three_prime_UTR 30.0%
!!! TGCTTTTGTTTTTGTGATGT+GGG - chr1_1:67654720-67654739 Msa0038260:three_prime_UTR 30.0%
!!! TGGGTTTTTGACTTTTGTTT+TGG - chr1_1:67654739-67654758 Msa0038260:three_prime_UTR 30.0%
! ATTTAAACTTTGTTGTCGGT+AGG - chr1_1:67655014-67655033 Msa0038260:intron 30.0%
! TAGGATTTAAAGTAGGGTTA+GGG - chr1_1:67655033-67655052 Msa0038260:intron 30.0%
GAGATTGCTGTCAATTAATT+TGG - chr1_1:67655075-67655094 Msa0038260:intron 30.0%
! TTTGGCAGTTTTCGATTTAA+GGG - chr1_1:67655158-67655177 Msa0038260:intron 30.0%
!! AGGATTTCAATAATGGACAT+TGG + chr1_1:67655418-67655437 None:intergenic 30.0%
AAAACTAATTGCACAGTCAA+AGG + chr1_1:67655479-67655498 None:intergenic 30.0%
!!! TGTGCAATTAGTTTTTACGT+GGG - chr1_1:67655484-67655503 Msa0038260:intron 30.0%
!!! TTTTAGGACTGAATTCTATG+AGG + chr1_1:67655525-67655544 None:intergenic 30.0%
ATGTGTTAGGAGAACAAAAA+AGG + chr1_1:67655580-67655599 None:intergenic 30.0%
AACAGATAATATTCTTGTGC+AGG - chr1_1:67655746-67655765 Msa0038260:intron 30.0%
TACTGATGAATATGTTGTCT+TGG - chr1_1:67655937-67655956 Msa0038260:intron 30.0%
! AGTTTTCGTTCTTAAATGTG+AGG - chr1_1:67655990-67656009 Msa0038260:intron 30.0%
! TTTTACTTCCAATATGCCAT+TGG - chr1_1:67656029-67656048 Msa0038260:intron 30.0%
GAGGAATTTATGTTTCTCAA+TGG + chr1_1:67656279-67656298 None:intergenic 30.0%
GGTATTAAGAAAAGTAGTTG+TGG + chr1_1:67656397-67656416 None:intergenic 30.0%
TTAATACCCTTGAACTTTGT+TGG - chr1_1:67656409-67656428 Msa0038260:intron 30.0%
!! TCTCCATTTCTTTTAAGTGT+TGG + chr1_1:67656654-67656673 None:intergenic 30.0%
!!! CCTAATTGACAGTTTTTTGT+TGG + chr1_1:67656838-67656857 None:intergenic 30.0%
CCAACAAAAAACTGTCAATT+AGG - chr1_1:67656835-67656854 Msa0038260:intron 30.0%
!!! TTTCTTTTTTTAGTAGCCAG+CGG - chr1_1:67657321-67657340 Msa0038260:intron 30.0%
AGGTTATAAAGGTAGATTTG+GGG - chr1_1:67657453-67657472 Msa0038260:intron 30.0%
ATTAGCAAATTGCTCATGTA+GGG + chr1_1:67657582-67657601 None:intergenic 30.0%
GATATCATCACAGAACATTA+TGG - chr1_1:67657727-67657746 Msa0038260:intron 30.0%
GTACACATATAGTACATTGT+AGG + chr1_1:67658027-67658046 None:intergenic 30.0%
!! GCACATGTTTTATTAGTTGA+AGG - chr1_1:67658066-67658085 Msa0038260:intron 30.0%
AGGTTACTTGCATATGATAA+TGG - chr1_1:67658086-67658105 Msa0038260:intron 30.0%
AACAGCAAACAAACTTCATA+AGG + chr1_1:67658209-67658228 None:intergenic 30.0%
TGTTAGCTATCTATAGTGAT+TGG - chr1_1:67658261-67658280 Msa0038260:intron 30.0%
AAGCTACACACAAATAAAAC+AGG + chr1_1:67658298-67658317 None:intergenic 30.0%
GGTTAATGATAAGAGATAGA+AGG - chr1_1:67658507-67658526 Msa0038260:intron 30.0%
ATTTCTTATGTACTCCATTC+AGG + chr1_1:67658541-67658560 None:intergenic 30.0%
TAAAAGCAGAATTGTGAAGT+TGG - chr1_1:67658584-67658603 Msa0038260:intron 30.0%
CAGTACAACTAAATTTACCA+AGG + chr1_1:67658843-67658862 None:intergenic 30.0%
ATAAATTCCTCAAAAAGACG+AGG + chr1_1:67658877-67658896 None:intergenic 30.0%
ATTTATCTTACTTTGACCAC+TGG - chr1_1:67658891-67658910 Msa0038260:CDS 30.0%
!!! CAACTTTGTTTTGGTATCTT+AGG - chr1_1:67659081-67659100 Msa0038260:CDS 30.0%
ACACTTCCTCCAAATATATT+AGG + chr1_1:67659174-67659193 None:intergenic 30.0%
TAATATATTTGGAGGAAGTG+TGG - chr1_1:67659173-67659192 Msa0038260:CDS 30.0%
CAAGGAATTGAAAACGTTGA+TGG - chr1_1:67654326-67654345 Msa0038260:three_prime_UTR 35.0%
! AATTGAAAACGTTGATGGGT+CGG - chr1_1:67654331-67654350 Msa0038260:three_prime_UTR 35.0%
TTATCCAATTGCTCCATAAC+AGG + chr1_1:67654449-67654468 None:intergenic 35.0%
!!! GTGCTTTTGTTTTTGTGATG+TGG - chr1_1:67654719-67654738 Msa0038260:three_prime_UTR 35.0%
! GTGATTTTAGGCTTATCAAG+TGG - chr1_1:67654768-67654787 Msa0038260:three_prime_UTR 35.0%
TTAGGCTTATCAAGTGGAAT+TGG - chr1_1:67654774-67654793 Msa0038260:three_prime_UTR 35.0%
!! GGAAAATGACAAGTTGATGA+AGG - chr1_1:67654822-67654841 Msa0038260:CDS 35.0%
!! TGACAAGTTGATGAAGGAAA+AGG - chr1_1:67654828-67654847 Msa0038260:CDS 35.0%
! CAAAGACGGTTTTACCATTT+CGG + chr1_1:67654957-67654976 None:intergenic 35.0%
ACCATCATCAATTCCAAAGA+CGG + chr1_1:67654971-67654990 None:intergenic 35.0%
! TTGTCGGTAGGATTTAAAGT+AGG - chr1_1:67655026-67655045 Msa0038260:intron 35.0%
! TGTCGGTAGGATTTAAAGTA+GGG - chr1_1:67655027-67655046 Msa0038260:intron 35.0%
! GTAGGATTTAAAGTAGGGTT+AGG - chr1_1:67655032-67655051 Msa0038260:intron 35.0%
! TGATGATTTTTCACGACAGA+GGG - chr1_1:67655126-67655145 Msa0038260:intron 35.0%
! GTTTGGCAGTTTTCGATTTA+AGG - chr1_1:67655157-67655176 Msa0038260:intron 35.0%
TACAAGGCAAACATTCTTTG+TGG - chr1_1:67655305-67655324 Msa0038260:intron 35.0%
AACCATTCGACTCTGATTAA+GGG - chr1_1:67655340-67655359 Msa0038260:intron 35.0%
!!! CTGTGCAATTAGTTTTTACG+TGG - chr1_1:67655483-67655502 Msa0038260:intron 35.0%
TACGTGGGTAATTTCCATAA+CGG - chr1_1:67655499-67655518 Msa0038260:intron 35.0%
AGAACAAAAAAGGAACTTCG+TGG + chr1_1:67655570-67655589 None:intergenic 35.0%
ATTATCTGTTAGATGTCAGG+AGG + chr1_1:67655736-67655755 None:intergenic 35.0%
!!! TTGGTTTGTTTTGGACCTTT+TGG - chr1_1:67655828-67655847 Msa0038260:intron 35.0%
CTTCAGCTATGGTATCAAAT+GGG + chr1_1:67655901-67655920 None:intergenic 35.0%
TCTTCAGCTATGGTATCAAA+TGG + chr1_1:67655902-67655921 None:intergenic 35.0%
AGAAGAAACCAATGGCATAT+TGG + chr1_1:67656040-67656059 None:intergenic 35.0%
CTTGATGTAGAAGAAACCAA+TGG + chr1_1:67656048-67656067 None:intergenic 35.0%
GTCTTATAATTAGAGGCAGA+GGG + chr1_1:67656161-67656180 None:intergenic 35.0%
! GAAAGGGGTCTTATAATTAG+AGG + chr1_1:67656168-67656187 None:intergenic 35.0%
GGACAATAAAAAGTGGAAAG+GGG + chr1_1:67656183-67656202 None:intergenic 35.0%
GGGACAATAAAAAGTGGAAA+GGG + chr1_1:67656184-67656203 None:intergenic 35.0%
AGGGACAATAAAAAGTGGAA+AGG + chr1_1:67656185-67656204 None:intergenic 35.0%
! TTCTCAATGGTGCTTTAAAC+AGG + chr1_1:67656266-67656285 None:intergenic 35.0%
! TGTTGGAGAGTCTTATGATA+AGG - chr1_1:67656426-67656445 Msa0038260:intron 35.0%
! GTTGGAGAGTCTTATGATAA+GGG - chr1_1:67656427-67656446 Msa0038260:intron 35.0%
ATGCAGCAACATATGTATAG+AGG - chr1_1:67656766-67656785 Msa0038260:intron 35.0%
TGCAGCAACATATGTATAGA+GGG - chr1_1:67656767-67656786 Msa0038260:intron 35.0%
TCAGGATATGAGTTACATCT+TGG + chr1_1:67656804-67656823 None:intergenic 35.0%
TTGTTGGACTGAAATCATTC+AGG + chr1_1:67656822-67656841 None:intergenic 35.0%
AATCTAGTGCAAGAGATAAC+CGG + chr1_1:67656989-67657008 None:intergenic 35.0%
AATTAGTATGCTTGGGAAGA+GGG - chr1_1:67657096-67657115 Msa0038260:intron 35.0%
! CTTTTGTCTTGCTGCATAAA+TGG + chr1_1:67657156-67657175 None:intergenic 35.0%
ATGCAGCAAGACAAAAGTTA+TGG - chr1_1:67657159-67657178 Msa0038260:intron 35.0%
TGCAGCAAGACAAAAGTTAT+GGG - chr1_1:67657160-67657179 Msa0038260:intron 35.0%
! TTGGTGGACAGAAATCATTA+AGG - chr1_1:67657198-67657217 Msa0038260:intron 35.0%
GTTGTTTAGAGGAAGCAAAT+AGG + chr1_1:67657296-67657315 None:intergenic 35.0%
AAGAAATCGCAGTTGTTTAG+AGG + chr1_1:67657307-67657326 None:intergenic 35.0%
!!! CTCATTTTGGGGTTTAAGAT+TGG + chr1_1:67657421-67657440 None:intergenic 35.0%
CATTAGCAAATTGCTCATGT+AGG + chr1_1:67657583-67657602 None:intergenic 35.0%
!! AGCAATTTGCTAATGTGCTA+TGG - chr1_1:67657588-67657607 Msa0038260:intron 35.0%
!! GCAATTTGCTAATGTGCTAT+GGG - chr1_1:67657589-67657608 Msa0038260:intron 35.0%
GAGAGACTACAGAAAACTAT+AGG - chr1_1:67657661-67657680 Msa0038260:intron 35.0%
ATAGCTAACATCTATTAGGC+TGG + chr1_1:67658251-67658270 None:intergenic 35.0%
AAATATGATCTACCACTGCA+AGG + chr1_1:67658385-67658404 None:intergenic 35.0%
AAGATGTGAACTGAAGATTG+TGG - chr1_1:67658416-67658435 Msa0038260:intron 35.0%
AGATGTGAACTGAAGATTGT+GGG - chr1_1:67658417-67658436 Msa0038260:intron 35.0%
ACGACTATATGATGTAGTCA+CGG - chr1_1:67658695-67658714 Msa0038260:intron 35.0%
TATTAACCATCACTGACATG+TGG - chr1_1:67658812-67658831 Msa0038260:CDS 35.0%
! TAATAGTCCTCGTCTTTTTG+AGG - chr1_1:67658867-67658886 Msa0038260:CDS 35.0%
!! TAGTCTTGTTGAGGATGTTA+AGG - chr1_1:67658925-67658944 Msa0038260:CDS 35.0%
! GTTGTGAAATAGTTTGCATG+AGG - chr1_1:67658947-67658966 Msa0038260:CDS 35.0%
! TGAAATAGTTTGCATGAGGA+AGG - chr1_1:67658951-67658970 Msa0038260:CDS 35.0%
GATTTGATCGTCGAGGAAAT+TGG + chr1_1:67654057-67654076 None:intergenic 40.0%
! GAGGATTTTCTTGTGAAAGC+TGG - chr1_1:67654203-67654222 Msa0038260:three_prime_UTR 40.0%
! TTTTCTTGTGAAAGCTGGTG+CGG - chr1_1:67654208-67654227 Msa0038260:three_prime_UTR 40.0%
GAAGATGACGATTCCGTTAT+CGG - chr1_1:67654259-67654278 Msa0038260:three_prime_UTR 40.0%
!!! TGGTAGTGGTATGTTTTCGT+TGG - chr1_1:67654292-67654311 Msa0038260:three_prime_UTR 40.0%
!! TCGTTGGATTCGAGTTTTCA+AGG - chr1_1:67654308-67654327 Msa0038260:three_prime_UTR 40.0%
AATGGCAATGGGAATGTGAA+TGG - chr1_1:67654380-67654399 Msa0038260:three_prime_UTR 40.0%
ATGGCAATGGGAATGTGAAT+GGG - chr1_1:67654381-67654400 Msa0038260:three_prime_UTR 40.0%
AGAATAGAGAATCTGCTGCT+AGG - chr1_1:67654501-67654520 Msa0038260:three_prime_UTR 40.0%
ATGTTATGATACACGGACAC+CGG - chr1_1:67654566-67654585 Msa0038260:three_prime_UTR 40.0%
CAAATGTGTCAGTGTTGTGT+TGG - chr1_1:67654633-67654652 Msa0038260:three_prime_UTR 40.0%
GTTGGACTAAAAACACGTGT+CGG - chr1_1:67654651-67654670 Msa0038260:three_prime_UTR 40.0%
TAAAAACACGTGTCGGATAC+AGG - chr1_1:67654658-67654677 Msa0038260:three_prime_UTR 40.0%
CGAAATGGTAAAACCGTCTT+TGG - chr1_1:67654955-67654974 Msa0038260:intron 40.0%
!! ACCGTCTTTGGAATTGATGA+TGG - chr1_1:67654967-67654986 Msa0038260:intron 40.0%
!! TTGGAATTGATGATGGTCTG+TGG - chr1_1:67654974-67654993 Msa0038260:intron 40.0%
! GTGATGATTTTTCACGACAG+AGG - chr1_1:67655125-67655144 Msa0038260:intron 40.0%
TTGCTGTGGTTAATGCTACA+AGG - chr1_1:67655289-67655308 Msa0038260:intron 40.0%
CAACCATTCGACTCTGATTA+AGG - chr1_1:67655339-67655358 Msa0038260:intron 40.0%
! GTTGTGCTTGTTAACAGAAG+TGG - chr1_1:67655388-67655407 Msa0038260:intron 40.0%
TGAATTCTATGAGGCCGTTA+TGG + chr1_1:67655516-67655535 None:intergenic 40.0%
!! AATGTTTCTTGGAGCACTGT+TGG - chr1_1:67655628-67655647 Msa0038260:intron 40.0%
CTGAAAATTCAAAGGGTTGC+AGG + chr1_1:67655685-67655704 None:intergenic 40.0%
GCTATGGTATCAAATGGGAA+AGG + chr1_1:67655896-67655915 None:intergenic 40.0%
TAGCAAGCAATCTTCAGCTA+TGG + chr1_1:67655912-67655931 None:intergenic 40.0%
! GGTCTTATAATTAGAGGCAG+AGG + chr1_1:67656162-67656181 None:intergenic 40.0%
GACTCTCCAACAAAGTTCAA+GGG + chr1_1:67656418-67656437 None:intergenic 40.0%
AGACTCTCCAACAAAGTTCA+AGG + chr1_1:67656419-67656438 None:intergenic 40.0%
! GAGAGTCTTATGATAAGGGA+CGG - chr1_1:67656431-67656450 Msa0038260:intron 40.0%
AATCACTAGTTGACGTGTAG+TGG - chr1_1:67656709-67656728 Msa0038260:intron 40.0%
AAACTGTCAATTAGGTGCAC+TGG - chr1_1:67656843-67656862 Msa0038260:intron 40.0%
AATCACGGAAAAACCCACTT+TGG - chr1_1:67656943-67656962 Msa0038260:intron 40.0%
GAGATAACCGGTTATCATCT+CGG + chr1_1:67656977-67656996 None:intergenic 40.0%
GTACATCAATGACACTTGTG+CGG + chr1_1:67657040-67657059 None:intergenic 40.0%
CTTCACTAGTAGGCAATGAA+AGG + chr1_1:67657062-67657081 None:intergenic 40.0%
TTCATTGCCTACTAGTGAAG+AGG - chr1_1:67657062-67657081 Msa0038260:intron 40.0%
TCATTGCCTACTAGTGAAGA+GGG - chr1_1:67657063-67657082 Msa0038260:intron 40.0%
GTAATACCCTCTTCACTAGT+AGG + chr1_1:67657072-67657091 None:intergenic 40.0%
CAATTAGTATGCTTGGGAAG+AGG - chr1_1:67657095-67657114 Msa0038260:intron 40.0%
CAAACCACCAAAGTTCATTC+AGG - chr1_1:67657127-67657146 Msa0038260:intron 40.0%
ATGGATGCCTGAATGAACTT+TGG + chr1_1:67657137-67657156 None:intergenic 40.0%
TGACACTATAGCGTCACTAT+TGG - chr1_1:67657380-67657399 Msa0038260:intron 40.0%
GACACTATAGCGTCACTATT+GGG - chr1_1:67657381-67657400 Msa0038260:intron 40.0%
!!! GTGGTATTGGCTCTTTTACA+TGG + chr1_1:67657764-67657783 None:intergenic 40.0%
! CAAAATCTTTTCCCACTAGG+TGG + chr1_1:67657783-67657802 None:intergenic 40.0%
! CACCTAGTGGGAAAAGATTT+TGG - chr1_1:67657781-67657800 Msa0038260:intron 40.0%
! CACCAAAATCTTTTCCCACT+AGG + chr1_1:67657786-67657805 None:intergenic 40.0%
! CTAGTGGGAAAAGATTTTGG+TGG - chr1_1:67657784-67657803 Msa0038260:intron 40.0%
GGAAAAAGTGATTCCTGTTG+TGG - chr1_1:67658320-67658339 Msa0038260:intron 40.0%
CAGTGGTAGATCATATTTGC+TGG - chr1_1:67658387-67658406 Msa0038260:CDS 40.0%
! TGGTAGATCATATTTGCTGG+TGG - chr1_1:67658390-67658409 Msa0038260:CDS 40.0%
AGAAGGAATCAGTACCTGAA+TGG - chr1_1:67658524-67658543 Msa0038260:intron 40.0%
TAGATACAATGTAGGCATCC+TGG - chr1_1:67658618-67658637 Msa0038260:intron 40.0%
ACTGCAAATGTGCTAGTAGA+GGG - chr1_1:67658657-67658676 Msa0038260:intron 40.0%
CAAGCACAGAAGTTTCAAGA+CGG + chr1_1:67658780-67658799 None:intergenic 40.0%
TATCTTACTTTGACCACTGG+TGG - chr1_1:67658894-67658913 Msa0038260:CDS 40.0%
TTGCATGAGGAAGGTAGAAT+AGG - chr1_1:67658960-67658979 Msa0038260:CDS 40.0%
AGCAGAATTTCGACAGACAA+AGG - chr1_1:67659046-67659065 Msa0038260:CDS 40.0%
AGATGGAGAAGAAGGTGGAT+CGG + chr1_1:67654012-67654031 None:intergenic 45.0%
TTAGGAGATGGAGAAGAAGG+TGG + chr1_1:67654017-67654036 None:intergenic 45.0%
GGTTTAGGAGATGGAGAAGA+AGG + chr1_1:67654020-67654039 None:intergenic 45.0%
GTGAAGTGAGGTTTAGGAGA+TGG + chr1_1:67654029-67654048 None:intergenic 45.0%
TTGATCGTCGAGGAAATTGG+CGG + chr1_1:67654054-67654073 None:intergenic 45.0%
TTCTTTACACTCCCTATCGC+CGG + chr1_1:67654156-67654175 None:intergenic 45.0%
ATAGGGTTTGGGAATGGGAA+TGG - chr1_1:67654356-67654375 Msa0038260:three_prime_UTR 45.0%
TAGGGTTTGGGAATGGGAAT+GGG - chr1_1:67654357-67654376 Msa0038260:three_prime_UTR 45.0%
TTTGGGAATGGGAATGGGAA+TGG - chr1_1:67654362-67654381 Msa0038260:three_prime_UTR 45.0%
AATGGGAATGGGAATGGCAA+TGG - chr1_1:67654368-67654387 Msa0038260:three_prime_UTR 45.0%
ATGGGAATGGGAATGGCAAT+GGG - chr1_1:67654369-67654388 Msa0038260:three_prime_UTR 45.0%
TGGCAATGGGAATGTGAATG+GGG - chr1_1:67654382-67654401 Msa0038260:three_prime_UTR 45.0%
GAATGTGAATGGGGTGGAAA+TGG - chr1_1:67654391-67654410 Msa0038260:three_prime_UTR 45.0%
AATGGGGTGGAAATGGTTGA+AGG - chr1_1:67654398-67654417 Msa0038260:three_prime_UTR 45.0%
AGAATCTGCTGCTAGGTCTA+GGG - chr1_1:67654508-67654527 Msa0038260:three_prime_UTR 45.0%
TCAAGTGGAATTGGAGTCCT+TGG - chr1_1:67654783-67654802 Msa0038260:three_prime_UTR 45.0%
GACAGAGGGACAAAGTTGTT+TGG - chr1_1:67655140-67655159 Msa0038260:intron 45.0%
CAAGCAGCTGATGGAAAATG+TGG + chr1_1:67655265-67655284 None:intergenic 45.0%
AGCAAAAAGCAAGCAGCTGA+TGG + chr1_1:67655274-67655293 None:intergenic 45.0%
GTCCCTTAATCAGAGTCGAA+TGG + chr1_1:67655345-67655364 None:intergenic 45.0%
CAAGCATGGTAGCATGTGTT+AGG + chr1_1:67655593-67655612 None:intergenic 45.0%
ATATTCTTGTGCAGGCTGAG+AGG - chr1_1:67655754-67655773 Msa0038260:intron 45.0%
GAAAAAGGAGAGGTTCAAGC+AGG - chr1_1:67655776-67655795 Msa0038260:intron 45.0%
ATAACCGGTTATCATCTCGG+TGG + chr1_1:67656974-67656993 None:intergenic 45.0%
GATGCCTGAATGAACTTTGG+TGG + chr1_1:67657134-67657153 None:intergenic 45.0%
!!! TGGGCTGCTCGTTAGTTTTT+TGG - chr1_1:67657179-67657198 Msa0038260:intron 45.0%
!!! GCTGCTCGTTAGTTTTTTGG+TGG - chr1_1:67657182-67657201 Msa0038260:intron 45.0%
!!! CTTTTTTTAGTAGCCAGCGG+TGG - chr1_1:67657324-67657343 Msa0038260:intron 45.0%
! TCACTATTGGGTTGCAAGAG+TGG - chr1_1:67657393-67657412 Msa0038260:intron 45.0%
TTGCTAATGTGCTATGGGAC+TGG - chr1_1:67657594-67657613 Msa0038260:intron 45.0%
AAAGAGCCAATACCACCTAG+TGG - chr1_1:67657768-67657787 Msa0038260:intron 45.0%
AAGAGCCAATACCACCTAGT+GGG - chr1_1:67657769-67657788 Msa0038260:intron 45.0%
! CTTTTCCCACTAGGTGGTAT+TGG + chr1_1:67657777-67657796 None:intergenic 45.0%
! GTTAGTCTCAAGGGTAACTG+TGG - chr1_1:67658486-67658505 Msa0038260:intron 45.0%
GACTGCAAATGTGCTAGTAG+AGG - chr1_1:67658656-67658675 Msa0038260:intron 45.0%
AATGTGCTAGTAGAGGGCAA+AGG - chr1_1:67658663-67658682 Msa0038260:intron 45.0%
ATGTGCTAGTAGAGGGCAAA+GGG - chr1_1:67658664-67658683 Msa0038260:intron 45.0%
!! GTGCTCTTGTAGTCTTGTTG+AGG - chr1_1:67658916-67658935 Msa0038260:CDS 45.0%
TCTGTCGAAATTCTGCTGCT+AGG + chr1_1:67659043-67659062 None:intergenic 45.0%
GAAGAAGGTGGATCGGAAGA+AGG + chr1_1:67654005-67654024 None:intergenic 50.0%
AAATTGGCGGTGGTGAAGTG+AGG + chr1_1:67654041-67654060 None:intergenic 50.0%
! TTCCGATGAGATGATGACGC+TGG - chr1_1:67654181-67654200 Msa0038260:three_prime_UTR 50.0%
CTCCAGCGTCATCATCTCAT+CGG + chr1_1:67654186-67654205 None:intergenic 50.0%
! AACGTTGATGGGTCGGTGAT+AGG - chr1_1:67654338-67654357 Msa0038260:three_prime_UTR 50.0%
! ACGTTGATGGGTCGGTGATA+GGG - chr1_1:67654339-67654358 Msa0038260:three_prime_UTR 50.0%
ATGGGTCGGTGATAGGGTTT+GGG - chr1_1:67654345-67654364 Msa0038260:three_prime_UTR 50.0%
TCGGTGATAGGGTTTGGGAA+TGG - chr1_1:67654350-67654369 Msa0038260:three_prime_UTR 50.0%
CGGTGATAGGGTTTGGGAAT+GGG - chr1_1:67654351-67654370 Msa0038260:three_prime_UTR 50.0%
CAATGGGAATGTGAATGGGG+TGG - chr1_1:67654385-67654404 Msa0038260:three_prime_UTR 50.0%
GGGTGGAAATGGTTGAAGGT+GGG - chr1_1:67654402-67654421 Msa0038260:three_prime_UTR 50.0%
GGTGGAAATGGTTGAAGGTG+GGG - chr1_1:67654403-67654422 Msa0038260:three_prime_UTR 50.0%
GTGGAAATGGTTGAAGGTGG+GGG - chr1_1:67654404-67654423 Msa0038260:three_prime_UTR 50.0%
TGGAAATGGTTGAAGGTGGG+GGG - chr1_1:67654405-67654424 Msa0038260:three_prime_UTR 50.0%
ACGGCCTGTTATGGAGCAAT+TGG - chr1_1:67654442-67654461 Msa0038260:three_prime_UTR 50.0%
GAGAATCTGCTGCTAGGTCT+AGG - chr1_1:67654507-67654526 Msa0038260:three_prime_UTR 50.0%
ACTCGTGTCAGTGTCATGTC+CGG + chr1_1:67654588-67654607 None:intergenic 50.0%
AGTGGAATTGGAGTCCTTGG+CGG - chr1_1:67654786-67654805 Msa0038260:exon 50.0%
!!! CAGCTGCTTGCTTTTTGCTG+TGG - chr1_1:67655275-67655294 Msa0038260:intron 50.0%
TGTGCAGGCTGAGAGGAAAA+AGG - chr1_1:67655761-67655780 Msa0038260:intron 50.0%
AGGCTGAGAGGAAAAAGGAG+AGG - chr1_1:67655766-67655785 Msa0038260:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_1:67656296-67656315 None:intergenic 50.0%
! GTCAATTAGGTGCACTGGTC+AGG - chr1_1:67656848-67656867 Msa0038260:intron 50.0%
TGCAGACCGCATCACATGAT+GGG - chr1_1:67656880-67656899 Msa0038260:intron 50.0%
! ATCACATGATGGGGTCCACA+GGG - chr1_1:67656890-67656909 Msa0038260:intron 50.0%
CACACCACCGAGATGATAAC+CGG - chr1_1:67656967-67656986 Msa0038260:intron 50.0%
ACTTGTGCGGTAGAGACATC+TGG + chr1_1:67657027-67657046 None:intergenic 50.0%
CTAATGTGCTATGGGACTGG+TGG - chr1_1:67657597-67657616 Msa0038260:intron 50.0%
CACATTTGCAGTCTGCACAG+GGG + chr1_1:67658649-67658668 None:intergenic 50.0%
GCACATTTGCAGTCTGCACA+GGG + chr1_1:67658650-67658669 None:intergenic 50.0%
AGCACATTTGCAGTCTGCAC+AGG + chr1_1:67658651-67658670 None:intergenic 50.0%
TGTGCTAGTAGAGGGCAAAG+GGG - chr1_1:67658665-67658684 Msa0038260:intron 50.0%
GCATCTCCACATGTCAGTGA+TGG + chr1_1:67658821-67658840 None:intergenic 50.0%
ACTGACATGTGGAGATGCCT+TGG - chr1_1:67658823-67658842 Msa0038260:CDS 50.0%
GCGGTGGTGAAGTGAGGTTT+AGG + chr1_1:67654035-67654054 None:intergenic 55.0%
ATCGTCGAGGAAATTGGCGG+TGG + chr1_1:67654051-67654070 None:intergenic 55.0%
CGAGGGAGATTTGATCGTCG+AGG + chr1_1:67654064-67654083 None:intergenic 55.0%
CGATGTGATCTCCGGCGATA+GGG - chr1_1:67654142-67654161 Msa0038260:three_prime_UTR 55.0%
! CGATGAGATGATGACGCTGG+AGG - chr1_1:67654184-67654203 Msa0038260:three_prime_UTR 55.0%
TGTGAAAGCTGGTGCGGTTG+AGG - chr1_1:67654214-67654233 Msa0038260:three_prime_UTR 55.0%
CCACTGAGCGTCTCCGATAA+CGG + chr1_1:67654275-67654294 None:intergenic 55.0%
GATGGGTCGGTGATAGGGTT+TGG - chr1_1:67654344-67654363 Msa0038260:three_prime_UTR 55.0%
GGGGTGGAAATGGTTGAAGG+TGG - chr1_1:67654401-67654420 Msa0038260:three_prime_UTR 55.0%
AAATGGTTGAAGGTGGGGGG+AGG - chr1_1:67654408-67654427 Msa0038260:three_prime_UTR 55.0%
AATGGTTGAAGGTGGGGGGA+GGG - chr1_1:67654409-67654428 Msa0038260:three_prime_UTR 55.0%
GAAGAGAGGACGGCCTGTTA+TGG - chr1_1:67654433-67654452 Msa0038260:three_prime_UTR 55.0%
AAGCTGCTCAGCAGAGACAG+AGG - chr1_1:67654468-67654487 Msa0038260:three_prime_UTR 55.0%
TAGGTCTAGGGAACGCAAGC+AGG - chr1_1:67654520-67654539 Msa0038260:three_prime_UTR 55.0%
ACGTGTAGTGGCAGCAACCA+GGG - chr1_1:67656721-67656740 Msa0038260:intron 55.0%
CTGCAGACCGCATCACATGA+TGG - chr1_1:67656879-67656898 Msa0038260:intron 55.0%
GCAGACCGCATCACATGATG+GGG - chr1_1:67656881-67656900 Msa0038260:intron 55.0%
GTGGACCCCATCATGTGATG+CGG + chr1_1:67656889-67656908 None:intergenic 55.0%
! CATCACATGATGGGGTCCAC+AGG - chr1_1:67656889-67656908 Msa0038260:intron 55.0%
! TCACATGATGGGGTCCACAG+GGG - chr1_1:67656891-67656910 Msa0038260:intron 55.0%
CGGTTATCATCTCGGTGGTG+TGG + chr1_1:67656969-67656988 None:intergenic 55.0%
TTCCTGTTGTGGAGCAGCGA+AGG - chr1_1:67658331-67658350 Msa0038260:intron 55.0%
ACTGCAAGGAGCGAACCCTA+CGG + chr1_1:67658371-67658390 None:intergenic 55.0%
!! GACTACAAGAGCACCACCAG+TGG + chr1_1:67658910-67658929 None:intergenic 55.0%
ATCGTCGACGGTTCGAGGAG+TGG + chr1_1:67654099-67654118 None:intergenic 60.0%
CAGACATCGTCGACGGTTCG+AGG + chr1_1:67654104-67654123 None:intergenic 60.0%
CTCGAACCGTCGACGATGTC+TGG - chr1_1:67654102-67654121 Msa0038260:three_prime_UTR 60.0%
CTCTCGCCAGACATCGTCGA+CGG + chr1_1:67654111-67654130 None:intergenic 60.0%
ATCGCCGGAGATCACATCGC+CGG + chr1_1:67654141-67654160 None:intergenic 60.0%
GCGATGTGATCTCCGGCGAT+AGG - chr1_1:67654141-67654160 Msa0038260:three_prime_UTR 60.0%
AGCTGGTGCGGTTGAGGATG+AGG - chr1_1:67654220-67654239 Msa0038260:three_prime_UTR 60.0%
TGGTGCGGTTGAGGATGAGG+AGG - chr1_1:67654223-67654242 Msa0038260:three_prime_UTR 60.0%
TGCGGTTGAGGATGAGGAGG+AGG - chr1_1:67654226-67654245 Msa0038260:three_prime_UTR 60.0%
GCGGTTGAGGATGAGGAGGA+GGG - chr1_1:67654227-67654246 Msa0038260:three_prime_UTR 60.0%
TGAGGATGAGGAGGAGGGTG+AGG - chr1_1:67654232-67654251 Msa0038260:three_prime_UTR 60.0%
CCGTTATCGGAGACGCTCAG+TGG - chr1_1:67654272-67654291 Msa0038260:three_prime_UTR 60.0%
TCGGAGACGCTCAGTGGTAG+TGG - chr1_1:67654278-67654297 Msa0038260:three_prime_UTR 60.0%
ATGGTTGAAGGTGGGGGGAG+GGG - chr1_1:67654410-67654429 Msa0038260:three_prime_UTR 60.0%
GTCCTTGGCGGTGAAGCTAG+AGG - chr1_1:67654798-67654817 Msa0038260:exon 60.0%
! CTCCTCTAGCTTCACCGCCA+AGG + chr1_1:67654803-67654822 None:intergenic 60.0%
CTTGGCGGTGAAGCTAGAGG+AGG - chr1_1:67654801-67654820 Msa0038260:exon 60.0%
GACGTGTAGTGGCAGCAACC+AGG - chr1_1:67656720-67656739 Msa0038260:intron 60.0%
ATTGCAGGCAGATGCCCCTG+TGG + chr1_1:67656908-67656927 None:intergenic 60.0%
CTCGGTGGTGTGGCCAAAGT+GGG + chr1_1:67656959-67656978 None:intergenic 60.0%
TCTCGGTGGTGTGGCCAAAG+TGG + chr1_1:67656960-67656979 None:intergenic 60.0%
ACCCTACGGAGTAACCGTGG+CGG + chr1_1:67658357-67658376 None:intergenic 60.0%
CGAACCCTACGGAGTAACCG+TGG + chr1_1:67658360-67658379 None:intergenic 60.0%
GTAGGGTTCGCTCCTTGCAG+TGG - chr1_1:67658370-67658389 Msa0038260:CDS 60.0%
GACGGTTCGAGGAGTGGCGA+CGG + chr1_1:67654093-67654112 None:intergenic 65.0%
GTCTGGCGAGAGATCGTCGC+CGG - chr1_1:67654119-67654138 Msa0038260:three_prime_UTR 65.0%
GTCGCCGGCGATGTGATCTC+CGG - chr1_1:67654134-67654153 Msa0038260:three_prime_UTR 65.0%
TGGTTGAAGGTGGGGGGAGG+GGG - chr1_1:67654411-67654430 Msa0038260:three_prime_UTR 65.0%
AGTAGCCAGCGGTGGCGCAA+CGG - chr1_1:67657332-67657351 Msa0038260:intron 65.0%
GGCCTTCGCTGCTCCACAAC+AGG + chr1_1:67658336-67658355 None:intergenic 65.0%
GCCGCCACGGTTACTCCGTA+GGG - chr1_1:67658353-67658372 Msa0038260:CDS 65.0%
GTCTGCACAGGGGTGAGACC+AGG + chr1_1:67658639-67658658 None:intergenic 65.0%
TCGAGGAGTGGCGACGGCGT+CGG + chr1_1:67654087-67654106 None:intergenic 70.0%
GGGGGAGGGGGAAGAGAGGA+CGG - chr1_1:67654423-67654442 Msa0038260:three_prime_UTR 70.0%
TGGAGCAGCGAAGGCCGCCA+CGG - chr1_1:67658340-67658359 Msa0038260:intron 70.0%
GGCCGCCACGGTTACTCCGT+AGG - chr1_1:67658352-67658371 Msa0038260:CDS 70.0%
!! AGTGGCGACGGCGTCGGCGA+GGG + chr1_1:67654081-67654100 None:intergenic 75.0%
GGTGGGGGGAGGGGGAAGAG+AGG - chr1_1:67654419-67654438 Msa0038260:three_prime_UTR 75.0%
!!! GAGTGGCGACGGCGTCGGCG+AGG + chr1_1:67654082-67654101 None:intergenic 80.0%
! GGCAGCCGTTGCGCCACCGC+TGG + chr1_1:67657340-67657359 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67653999 67659201 67653999 ID=Msa0038260;Name=Msa0038260
chr1_1 mRNA 67653999 67659201 67653999 ID=Msa0038260-mRNA-1;Parent=Msa0038260;Name=Msa0038260-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.66|0.75|1|0.66|0.75|4|806|198
chr1_1 exon 67653999 67654885 67653999 ID=Msa0038260-mRNA-1:exon:22001;Parent=Msa0038260-mRNA-1
chr1_1 exon 67657403 67657432 67657403 ID=Msa0038260-mRNA-1:exon:22000;Parent=Msa0038260-mRNA-1
chr1_1 exon 67658351 67658422 67658351 ID=Msa0038260-mRNA-1:exon:21999;Parent=Msa0038260-mRNA-1
chr1_1 exon 67658788 67659201 67658788 ID=Msa0038260-mRNA-1:exon:21998;Parent=Msa0038260-mRNA-1
chr1_1 CDS 67658788 67659201 67658788 ID=Msa0038260-mRNA-1:cds;Parent=Msa0038260-mRNA-1
chr1_1 CDS 67658351 67658422 67658351 ID=Msa0038260-mRNA-1:cds;Parent=Msa0038260-mRNA-1
chr1_1 CDS 67657403 67657432 67657403 ID=Msa0038260-mRNA-1:cds;Parent=Msa0038260-mRNA-1
chr1_1 CDS 67654805 67654885 67654805 ID=Msa0038260-mRNA-1:cds;Parent=Msa0038260-mRNA-1
chr1_1 three_prime_UTR 67653999 67654804 67653999 ID=Msa0038260-mRNA-1:three_prime_utr;Parent=Msa0038260-mRNA-1
Gene Sequence

>Msa0038260

ATGCCTTCTTCCGATCCACCTTCTTCTCCATCTCCTAAACCTCACTTCACCACCGCCAATTTCCTCGACGATCAAATCTCCCTCGCCGACGCCGTCGCCACTCCTCGAACCGTCGACGATGTCTGGCGAGAGATCGTCGCCGGCGATGTGATCTCCGGCGATAGGGAGTGTAAAGAAGAGATTTCCGATGAGATGATGACGCTGGAGGATTTTCTTGTGAAAGCTGGTGCGGTTGAGGATGAGGAGGAGGGTGAGGATGTGAAGATGACGATTCCGTTATCGGAGACGCTCAGTGGTAGTGGTATGTTTTCGTTGGATTCGAGTTTTCAAGGAATTGAAAACGTTGATGGGTCGGTGATAGGGTTTGGGAATGGGAATGGGAATGGCAATGGGAATGTGAATGGGGTGGAAATGGCTTATCAAGTGGAATTGGAGTCCTTGGCGGTGAAGCTAGAGGAGGAAAATGACAAGTTGATGAAGGAAAAGGCTGAGAGGAAAAAGGAGAGGTTCAAGCAGCTTATGGAAAAAGTGATTCCTGTTGTGGAGCAGCGAAGGCCGCCACGGTTACTCCGTAGGGTTCGCTCCTTGCAGTGGTAG
Protein sequence

>Msa0038260

MPSSDPPSSPSPKPHFTTANFLDDQISLADAVATPRTVDDVWREIVAGDVISGDRECKEEISDEMMTLEDFLVKAGAVEDEEEGEDVKMTIPLSETLSGSGMFSLDSSFQGIENVDGSVIGFGNGNGNGNGNVNGVEMAYQVELESLAVKLEEENDKLMKEKAERKKERFKQLMEKVIPVVEQRRPPRLLRRVRSLQW*