AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0132490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132490 MtrunA17_Chr1g0201751 97.166 247 3 1 1 247 1 243 8.18e-174 478
Msa0132490 MtrunA17_Chr4g0051101 40.513 195 58 5 44 223 36 187 3.54e-25 98.6
Msa0132490 MtrunA17_Chr8g0355121 31.224 237 134 4 28 245 85 311 6.21e-18 81.3
Msa0132490 MtrunA17_Chr3g0080341 31.628 215 88 5 42 211 96 296 1.27e-16 77.8
Msa0132490 MtrunA17_Chr3g0133971 43.697 119 58 3 133 247 318 431 8.30e-16 76.3
Msa0132490 MtrunA17_Chr2g0321411 32.273 220 120 8 23 225 62 269 9.23e-16 75.1
Msa0132490 MtrunA17_Chr5g0440841 35.829 187 83 6 32 211 87 243 8.40e-14 69.3
Msa0132490 MtrunA17_Chr4g0044771 56.250 64 24 1 150 213 289 348 3.11e-13 68.6
Msa0132490 MtrunA17_Chr7g0254991 47.674 86 31 2 161 244 244 317 3.48e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132490 AT5G44080.1 46.545 275 82 9 9 247 70 315 3.75e-66 207
Msa0132490 AT1G03970.1 49.153 236 85 8 19 247 63 270 5.98e-54 175
Msa0132490 AT2G36270.1 45.082 122 57 4 127 245 320 434 2.85e-16 77.8
Msa0132490 AT2G36270.2 45.082 122 57 4 127 245 320 434 2.85e-16 77.8
Msa0132490 AT1G45249.1 43.548 124 58 3 127 247 302 416 3.26e-16 77.8
Msa0132490 AT1G45249.7 43.548 124 58 3 127 247 317 431 4.06e-16 77.4
Msa0132490 AT1G45249.6 43.548 124 58 3 127 247 317 431 4.06e-16 77.4
Msa0132490 AT2G36270.3 50.000 96 45 2 127 222 320 412 2.07e-15 75.5
Msa0132490 AT3G56850.1 31.169 231 104 6 42 244 91 294 3.11e-15 73.9
Msa0132490 AT2G41070.4 31.944 216 102 8 42 244 85 268 2.07e-13 68.6
Msa0132490 AT1G45249.3 40.000 135 58 4 127 247 302 427 2.30e-13 69.3
Msa0132490 AT2G41070.3 31.944 216 102 8 42 244 76 259 2.39e-13 68.2
Msa0132490 AT2G41070.1 31.944 216 102 8 42 244 76 259 2.39e-13 68.2
Msa0132490 AT2G41070.2 31.944 216 102 8 42 244 76 259 2.39e-13 68.2
Msa0132490 AT1G49720.1 45.361 97 48 2 153 247 299 392 2.83e-13 68.9
Msa0132490 AT1G49720.3 45.361 97 48 2 153 247 299 392 2.83e-13 68.9
Msa0132490 AT3G19290.3 45.455 99 45 3 153 247 339 432 6.22e-13 68.2
Msa0132490 AT2G41070.5 33.871 186 86 7 42 213 76 238 1.14e-12 66.2
Msa0132490 AT4G34000.1 51.515 66 32 0 161 226 368 433 1.25e-12 67.4
Msa0132490 AT4G34000.4 51.515 66 32 0 161 226 368 433 1.25e-12 67.4
Msa0132490 AT4G34000.2 51.515 66 32 0 161 226 368 433 1.25e-12 67.4
Msa0132490 AT3G19290.4 59.016 61 25 0 153 213 339 399 1.35e-12 67.0
Msa0132490 AT3G19290.1 59.016 61 25 0 153 213 339 399 1.66e-12 67.0
Msa0132490 AT3G19290.5 59.016 61 25 0 153 213 339 399 1.66e-12 67.0
Msa0132490 AT4G34000.3 45.946 74 33 1 161 227 368 441 1.19e-11 64.3
Msa0132490 AT1G49720.2 49.296 71 36 0 153 223 299 369 3.32e-11 62.8
Msa0132490 AT3G44460.1 32.906 234 119 7 42 247 108 331 5.23e-11 62.0

Find 146 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTGGGATTGTGATTT+TGG 0.132697 1_3:+63557889 None:intergenic
GATTGTGGGAAATAATAAAA+TGG 0.217623 1_3:-63553377 Msa0132490:three_prime_UTR
ATAGAATAGATCTAAGAATT+AGG 0.232080 1_3:+63557861 None:intergenic
ACACTTCCTCCAAATATATT+AGG 0.308552 1_3:+63552637 None:intergenic
TTAGTGAGATGCTATTATTT+AGG 0.331677 1_3:-63553089 Msa0132490:three_prime_UTR
GAAGATGACGATTCCGTTAT+CGG 0.332969 1_3:-63557558 Msa0132490:CDS
TTATCCAATTGCTCCATAAC+AGG 0.338573 1_3:+63557371 None:intergenic
GATTAGATACAACTTTGTTT+TGG 0.340810 1_3:-63552736 Msa0132490:three_prime_UTR
CAAGGAATTGAAAACGTTGA+TGG 0.345371 1_3:-63557491 Msa0132490:CDS
GATTTGATCGTCGAGGAAAT+TGG 0.346078 1_3:+63557763 None:intergenic
AACGTTGATGGGTCGGTGAT+AGG 0.356163 1_3:-63557479 Msa0132490:CDS
GATGGGTCGGTGATAGGGTT+TGG 0.356739 1_3:-63557473 Msa0132490:CDS
CGGTGATAGGGTTTGGGAAT+GGG 0.358384 1_3:-63557466 Msa0132490:CDS
TAGAATAGATCTAAGAATTA+GGG 0.364886 1_3:+63557862 None:intergenic
GTGGAAATGGTTGAAGGTGG+GGG 0.368454 1_3:-63557413 Msa0132490:CDS
CTCGAACCGTCGACGATGTC+TGG 0.371504 1_3:-63557715 Msa0132490:CDS
ATGGGTCGGTGATAGGGTTT+GGG 0.380377 1_3:-63557472 Msa0132490:CDS
GGCCTTCGCTGCTCCACAAC+AGG 0.380747 1_3:+63553475 None:intergenic
TTAGGCTTATCAAGTGGAAT+TGG 0.384866 1_3:-63557043 Msa0132490:intron
GAAGAGAGGACGGCCTGTTA+TGG 0.389128 1_3:-63557384 Msa0132490:CDS
ATGGCAATGGGAATGTGAAT+GGG 0.390238 1_3:-63557436 Msa0132490:CDS
ATTTCTTATGTACTCCATTC+AGG 0.390544 1_3:+63553270 None:intergenic
GGGGTGGAAATGGTTGAAGG+TGG 0.394857 1_3:-63557416 Msa0132490:CDS
TGTGCAGGCTGAGAGGAAAA+AGG 0.400339 1_3:-63556053 Msa0132490:intron
GGTGGAAATGGTTGAAGGTG+GGG 0.410518 1_3:-63557414 Msa0132490:CDS
GAGAATCTGCTGCTAGGTCT+AGG 0.414539 1_3:-63557310 Msa0132490:CDS
TGAGGATGAGGAGGAGGGTG+AGG 0.414838 1_3:-63557585 Msa0132490:CDS
TAGTCTTGTTGAGGATGTTA+AGG 0.418993 1_3:-63552883 Msa0132490:three_prime_UTR
TCGGTGATAGGGTTTGGGAA+TGG 0.430970 1_3:-63557467 Msa0132490:CDS
GAATGTGAATGGGGTGGAAA+TGG 0.432712 1_3:-63557426 Msa0132490:CDS
ATTGTGGGAAATAATAAAAT+GGG 0.433816 1_3:-63553376 Msa0132490:three_prime_UTR
GCGGTGGTGAAGTGAGGTTT+AGG 0.434316 1_3:+63557785 None:intergenic
GGCGAGTGTAAAGAGGTAGT+TGG 0.436621 1_3:-63557974 Msa0132490:five_prime_UTR
AATGGCAATGGGAATGTGAA+TGG 0.440487 1_3:-63557437 Msa0132490:CDS
CAGTGGTAGATCATATTTGC+TGG 0.440876 1_3:-63553421 Msa0132490:exon
ACGGCCTGTTATGGAGCAAT+TGG 0.442422 1_3:-63557375 Msa0132490:CDS
TAGGGTTTGGGAATGGGAAT+GGG 0.448106 1_3:-63557460 Msa0132490:CDS
ATGGGAATGGGAATGGCAAT+GGG 0.449145 1_3:-63557448 Msa0132490:CDS
GCGAGTGTAAAGAGGTAGTT+GGG 0.455860 1_3:-63557973 Msa0132490:five_prime_UTR
TTGCATGAGGAAGGTAGAAT+AGG 0.460116 1_3:-63552848 Msa0132490:three_prime_UTR
AATGGGAATGGGAATGGCAA+TGG 0.463203 1_3:-63557449 Msa0132490:CDS
CCACTGAGCGTCTCCGATAA+CGG 0.464675 1_3:+63557545 None:intergenic
TGCGGTTGAGGATGAGGAGG+AGG 0.464821 1_3:-63557591 Msa0132490:CDS
ATAGGGTTTGGGAATGGGAA+TGG 0.466638 1_3:-63557461 Msa0132490:CDS
GGTTAATGATAAGAGATAGA+AGG 0.467437 1_3:-63553301 Msa0132490:three_prime_UTR
TGGAAATGGTTGAAGGTGGG+GGG 0.467922 1_3:-63557412 Msa0132490:CDS
ACGTTGATGGGTCGGTGATA+GGG 0.467935 1_3:-63557478 Msa0132490:CDS
TCAAGTGGAATTGGAGTCCT+TGG 0.472571 1_3:-63557034 Msa0132490:CDS
AGATGGAGAAGAAGGTGGAT+CGG 0.476558 1_3:+63557808 None:intergenic
GGGTGGAAATGGTTGAAGGT+GGG 0.482957 1_3:-63557415 Msa0132490:CDS
TCTTAGATCTATTCTATCCA+TGG 0.484430 1_3:-63557855 Msa0132490:exon
TAAAAGCAGAATTGTGAAGT+TGG 0.484596 1_3:-63553224 Msa0132490:three_prime_UTR
ATGTGCTAGTAGAGGGCAAA+GGG 0.484672 1_3:-63553144 Msa0132490:three_prime_UTR
TGTGAAAGCTGGTGCGGTTG+AGG 0.485583 1_3:-63557603 Msa0132490:CDS
GGTTTAGGAGATGGAGAAGA+AGG 0.490179 1_3:+63557800 None:intergenic
AGCACATTTGCAGTCTGCAC+AGG 0.493719 1_3:+63553160 None:intergenic
TGACAAGTTGATGAAGGAAA+AGG 0.495815 1_3:-63556989 Msa0132490:intron
GTGAAGTGAGGTTTAGGAGA+TGG 0.499875 1_3:+63557791 None:intergenic
TAGGTCTAGGGAACGCAAGC+AGG 0.503430 1_3:-63557297 Msa0132490:intron
TCGAGGAGTGGCGACGGCGT+CGG 0.506745 1_3:+63557733 None:intergenic
TTTGGGAATGGGAATGGGAA+TGG 0.507407 1_3:-63557455 Msa0132490:CDS
GGAAAATGACAAGTTGATGA+AGG 0.507651 1_3:-63556995 Msa0132490:CDS
AGCTGGTGCGGTTGAGGATG+AGG 0.510481 1_3:-63557597 Msa0132490:CDS
TGAAATAGTTTGCATGAGGA+AGG 0.512588 1_3:-63552857 Msa0132490:three_prime_UTR
GCGATGTGATCTCCGGCGAT+AGG 0.515092 1_3:-63557676 Msa0132490:CDS
AATGGGGTGGAAATGGTTGA+AGG 0.515608 1_3:-63557419 Msa0132490:CDS
TTCTTTACACTCCCTATCGC+CGG 0.515808 1_3:+63557664 None:intergenic
ATTTATCTTACTTTGACCAC+TGG 0.518168 1_3:-63552917 Msa0132490:three_prime_UTR
GAGTGGCGACGGCGTCGGCG+AGG 0.520677 1_3:+63557738 None:intergenic
ATCGGAAGAAGGCATGAGCT+TGG 0.521805 1_3:+63557826 None:intergenic
AAGGAATTGAAAACGTTGAT+GGG 0.523079 1_3:-63557490 Msa0132490:CDS
CGATGTGATCTCCGGCGATA+GGG 0.523997 1_3:-63557675 Msa0132490:CDS
TCGGAGACGCTCAGTGGTAG+TGG 0.524000 1_3:-63557539 Msa0132490:CDS
GTCTGCACAGGGGTGAGACC+AGG 0.526399 1_3:+63553172 None:intergenic
GTCGCCGGCGATGTGATCTC+CGG 0.529993 1_3:-63557683 Msa0132490:CDS
AGAAGGAATCAGTACCTGAA+TGG 0.529994 1_3:-63553284 Msa0132490:three_prime_UTR
GAAGAAGGTGGATCGGAAGA+AGG 0.530586 1_3:+63557815 None:intergenic
TTAGGAGATGGAGAAGAAGG+TGG 0.530669 1_3:+63557803 None:intergenic
TAGATACAATGTAGGCATCC+TGG 0.531044 1_3:-63553190 Msa0132490:three_prime_UTR
TGGCAATGGGAATGTGAATG+GGG 0.531390 1_3:-63557435 Msa0132490:CDS
ATCAAAATAGTTAGTCTCAA+GGG 0.531521 1_3:-63553331 Msa0132490:three_prime_UTR
AATCAAAATAGTTAGTCTCA+AGG 0.538063 1_3:-63553332 Msa0132490:three_prime_UTR
CTCCTCTAGCTTCACCGCCA+AGG 0.538630 1_3:+63557017 None:intergenic
GTGCTCTTGTAGTCTTGTTG+AGG 0.541304 1_3:-63552892 Msa0132490:three_prime_UTR
AAATTGGCGGTGGTGAAGTG+AGG 0.542267 1_3:+63557779 None:intergenic
GACAAGTGGCGAGTGTAAAG+AGG 0.544331 1_3:-63557981 Msa0132490:five_prime_UTR
GCCGCCACGGTTACTCCGTA+GGG 0.544674 1_3:-63553455 Msa0132490:CDS
TATCTTACTTTGACCACTGG+TGG 0.545885 1_3:-63552914 Msa0132490:three_prime_UTR
GCGGTTGAGGATGAGGAGGA+GGG 0.553341 1_3:-63557590 Msa0132490:CDS
CGATGAGATGATGACGCTGG+AGG 0.560524 1_3:-63557633 Msa0132490:CDS
CATGAGCTTGGAAGAAGCCA+TGG 0.560742 1_3:+63557838 None:intergenic
TCTGTCGAAATTCTGCTGCT+AGG 0.562774 1_3:+63552768 None:intergenic
AGAATCTGCTGCTAGGTCTA+GGG 0.563610 1_3:-63557309 Msa0132490:CDS
TTCCTGTTGTGGAGCAGCGA+AGG 0.563922 1_3:-63553477 Msa0132490:CDS
GGCCGCCACGGTTACTCCGT+AGG 0.566727 1_3:-63553456 Msa0132490:CDS
ATCGTCGAGGAAATTGGCGG+TGG 0.569885 1_3:+63557769 None:intergenic
AGAATAGAGAATCTGCTGCT+AGG 0.572500 1_3:-63557316 Msa0132490:CDS
CTCCAGCGTCATCATCTCAT+CGG 0.572527 1_3:+63557634 None:intergenic
AGTGGCGACGGCGTCGGCGA+GGG 0.573280 1_3:+63557739 None:intergenic
ATCGTCGACGGTTCGAGGAG+TGG 0.573362 1_3:+63557721 None:intergenic
AGATGTGAACTGAAGATTGT+GGG 0.576025 1_3:-63553391 Msa0132490:three_prime_UTR
CAGACATCGTCGACGGTTCG+AGG 0.576404 1_3:+63557716 None:intergenic
GCACATTTGCAGTCTGCACA+GGG 0.576824 1_3:+63553161 None:intergenic
TAATATATTTGGAGGAAGTG+TGG 0.577323 1_3:-63552635 Msa0132490:three_prime_UTR
GACTGCAAATGTGCTAGTAG+AGG 0.577729 1_3:-63553152 Msa0132490:three_prime_UTR
GACGGTTCGAGGAGTGGCGA+CGG 0.580962 1_3:+63557727 None:intergenic
AGCAGAATTTCGACAGACAA+AGG 0.584150 1_3:-63552762 Msa0132490:three_prime_UTR
AATTGAAAACGTTGATGGGT+CGG 0.585668 1_3:-63557486 Msa0132490:CDS
GTCTGGCGAGAGATCGTCGC+CGG 0.590254 1_3:-63557698 Msa0132490:CDS
ACTGACATGTGGAGATGCCT+TGG 0.591692 1_3:-63552985 Msa0132490:three_prime_UTR
AAGCTGCTCAGCAGAGACAG+AGG 0.593315 1_3:-63557349 Msa0132490:CDS
GTTGTGAAATAGTTTGCATG+AGG 0.601381 1_3:-63552861 Msa0132490:three_prime_UTR
TTGATCGTCGAGGAAATTGG+CGG 0.607652 1_3:+63557766 None:intergenic
GCATCTCCACATGTCAGTGA+TGG 0.607945 1_3:+63552990 None:intergenic
ACTGCAAATGTGCTAGTAGA+GGG 0.608591 1_3:-63553151 Msa0132490:three_prime_UTR
ATCGCCGGAGATCACATCGC+CGG 0.608850 1_3:+63557679 None:intergenic
TTCCGATGAGATGATGACGC+TGG 0.609887 1_3:-63557636 Msa0132490:CDS
CTCTCGCCAGACATCGTCGA+CGG 0.611545 1_3:+63557709 None:intergenic
CAATGGGAATGTGAATGGGG+TGG 0.612710 1_3:-63557432 Msa0132490:CDS
TGGAGCAGCGAAGGCCGCCA+CGG 0.612735 1_3:-63553468 Msa0132490:CDS
ATGTAGTTTAGATACAATGT+AGG 0.614808 1_3:-63553198 Msa0132490:three_prime_UTR
GTAGGGTTCGCTCCTTGCAG+TGG 0.618144 1_3:-63553438 Msa0132490:CDS
AGTGGAATTGGAGTCCTTGG+CGG 0.619638 1_3:-63557031 Msa0132490:CDS
GTCCTTGGCGGTGAAGCTAG+AGG 0.622234 1_3:-63557019 Msa0132490:CDS
TTCTGACAGTGTAGAAGCTG+CGG 0.626318 1_3:+63557941 None:intergenic
TACATTGTATCTAAACTACA+TGG 0.630821 1_3:+63553200 None:intergenic
CCGTTATCGGAGACGCTCAG+TGG 0.634758 1_3:-63557545 Msa0132490:CDS
ATATTCTTGTGCAGGCTGAG+AGG 0.635094 1_3:-63556060 Msa0132490:intron
AATGTGCTAGTAGAGGGCAA+AGG 0.636434 1_3:-63553145 Msa0132490:three_prime_UTR
AAATATGATCTACCACTGCA+AGG 0.655779 1_3:+63553426 None:intergenic
GTTAGTCTCAAGGGTAACTG+TGG 0.658223 1_3:-63553322 Msa0132490:three_prime_UTR
TATTAACCATCACTGACATG+TGG 0.659157 1_3:-63552996 Msa0132490:three_prime_UTR
AAGATGTGAACTGAAGATTG+TGG 0.663194 1_3:-63553392 Msa0132490:three_prime_UTR
GACTACAAGAGCACCACCAG+TGG 0.664023 1_3:+63552901 None:intergenic
TGGTGCGGTTGAGGATGAGG+AGG 0.665882 1_3:-63557594 Msa0132490:CDS
TGGTAGATCATATTTGCTGG+TGG 0.666125 1_3:-63553418 Msa0132490:exon
CGAGGGAGATTTGATCGTCG+AGG 0.673387 1_3:+63557756 None:intergenic
ACTGCAAGGAGCGAACCCTA+CGG 0.673999 1_3:+63553440 None:intergenic
ACGACTATATGATGTAGTCA+CGG 0.675264 1_3:-63553113 Msa0132490:three_prime_UTR
CAAGCACAGAAGTTTCAAGA+CGG 0.681774 1_3:+63553031 None:intergenic
CAGTACAACTAAATTTACCA+AGG 0.691069 1_3:+63552968 None:intergenic
CTTGGCGGTGAAGCTAGAGG+AGG 0.703301 1_3:-63557016 Msa0132490:CDS
CGAACCCTACGGAGTAACCG+TGG 0.709737 1_3:+63553451 None:intergenic
TGTGCTAGTAGAGGGCAAAG+GGG 0.714313 1_3:-63553143 Msa0132490:three_prime_UTR
CACATTTGCAGTCTGCACAG+GGG 0.730816 1_3:+63553162 None:intergenic
ACCCTACGGAGTAACCGTGG+CGG 0.761547 1_3:+63553454 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAATACTATAGAAA+AGG + chr1_3:63554890-63554909 None:intergenic 10.0%
!!! AATAATTTTTAACTCATTTT+GGG + chr1_3:63556252-63556271 None:intergenic 10.0%
!!! TAATAATTTTTAACTCATTT+TGG + chr1_3:63556253-63556272 None:intergenic 10.0%
!! AAAATGAGTTAAAAATTATT+AGG - chr1_3:63556252-63556271 Msa0132490:intron 10.0%
!! TAAAAATTATTAGGTTATAA+AGG - chr1_3:63556261-63556280 Msa0132490:intron 10.0%
!! AAATAATATGTATAAATAAC+AGG + chr1_3:63556754-63556773 None:intergenic 10.0%
!! TGAAAGAAAAAATATTTAAA+GGG + chr1_3:63556796-63556815 None:intergenic 10.0%
!!! ATTTTTTTACCTAATATATT+TGG - chr1_3:63557980-63557999 Msa0132490:five_prime_UTR 10.0%
!!! ATTTTGACATTTCATAAATT+AGG - chr1_3:63553993-63554012 Msa0132490:intron 15.0%
!!! TTTTGACATTTCATAAATTA+GGG - chr1_3:63553994-63554013 Msa0132490:intron 15.0%
!! TCATGATATCAATAATTTAT+AGG - chr1_3:63555151-63555170 Msa0132490:intron 15.0%
!! CATGATATCAATAATTTATA+GGG - chr1_3:63555152-63555171 Msa0132490:intron 15.0%
!!! ATTTTTTTAATGAATTTCCT+TGG - chr1_3:63555426-63555445 Msa0132490:intron 15.0%
!!! ATAATTTTTAACTCATTTTG+GGG + chr1_3:63556251-63556270 None:intergenic 15.0%
!! ATGTGAAATATAGAATTAAA+TGG - chr1_3:63556513-63556532 Msa0132490:intron 15.0%
!! CTGAAAGAAAAAATATTTAA+AGG + chr1_3:63556797-63556816 None:intergenic 15.0%
!! TAGAATAGATCTAAGAATTA+GGG + chr1_3:63552767-63552786 None:intergenic 20.0%
!! ATAGAATAGATCTAAGAATT+AGG + chr1_3:63552768-63552787 None:intergenic 20.0%
!!! GCTGATTTATAAAAAAATTG+CGG + chr1_3:63553682-63553701 None:intergenic 20.0%
!! ATTATAGTAAATTTCCGAAA+TGG - chr1_3:63553749-63553768 Msa0132490:intron 20.0%
!! TGTTTGAAAAAAAAAACAGA+AGG + chr1_3:63554250-63554269 None:intergenic 20.0%
!! CAAATATATAAAAACAAGCA+TGG + chr1_3:63554419-63554438 None:intergenic 20.0%
!!! CATGCTTGTTTTTATATATT+TGG - chr1_3:63554417-63554436 Msa0132490:intron 20.0%
!!! TATATATTTGGAATGTTTCT+TGG - chr1_3:63554429-63554448 Msa0132490:intron 20.0%
!! TCTAAATCTGAAAATTCAAA+GGG + chr1_3:63554504-63554523 None:intergenic 20.0%
!!! TATTTTATGCTATTGTTTGT+TGG - chr1_3:63554621-63554640 Msa0132490:intron 20.0%
!! AAAACACTTAAAAATGAACT+GGG + chr1_3:63554932-63554951 None:intergenic 20.0%
!! AAAAACACTTAAAAATGAAC+TGG + chr1_3:63554933-63554952 None:intergenic 20.0%
!! TGAAAAGGATCTTATATTAA+GGG + chr1_3:63555016-63555035 None:intergenic 20.0%
!! TTGAAAAGGATCTTATATTA+AGG + chr1_3:63555017-63555036 None:intergenic 20.0%
!!! ATGCATATAGAATTTTGAAA+AGG + chr1_3:63555031-63555050 None:intergenic 20.0%
!! TACATTGTGTTTATAAATCA+CGG - chr1_3:63555747-63555766 Msa0132490:intron 20.0%
!! ACACAAAACTAAAAAAACAA+CGG + chr1_3:63556180-63556199 None:intergenic 20.0%
!! TCAAGATTCATAATTAACAA+TGG + chr1_3:63556303-63556322 None:intergenic 20.0%
!! TAATTCTGTCAAATAGTTAA+AGG - chr1_3:63556453-63556472 Msa0132490:intron 20.0%
!! TATCTCTTAAATCTTTGAAT+CGG + chr1_3:63556954-63556973 None:intergenic 20.0%
!! ATTGTGGGAAATAATAAAAT+GGG - chr1_3:63557250-63557269 Msa0132490:intron 20.0%
!!! TTTTTACCTAATATATTTGG+AGG - chr1_3:63557983-63558002 Msa0132490:five_prime_UTR 20.0%
!!! GAATTAGGGTTTTTGAAATT+GGG + chr1_3:63552753-63552772 None:intergenic 25.0%
!!! AGAATTAGGGTTTTTGAAAT+TGG + chr1_3:63552754-63552773 None:intergenic 25.0%
!!! TTTTGGTTTTGTGTGATTTT+AGG - chr1_3:63553565-63553584 Msa0132490:intron 25.0%
!! CTCTATTTAAACTTTGTTGT+CGG - chr1_3:63553819-63553838 Msa0132490:intron 25.0%
! TTCTAAACTATCATCAATAG+AGG + chr1_3:63553913-63553932 None:intergenic 25.0%
! AAACAGAAGGATTTCAATAA+TGG + chr1_3:63554237-63554256 None:intergenic 25.0%
!! CACAAATAGAATGAGATTTT+AGG + chr1_3:63554353-63554372 None:intergenic 25.0%
! CTCTAAATCTGAAAATTCAA+AGG + chr1_3:63554505-63554524 None:intergenic 25.0%
! AATATTATCTGTTAGATGTC+AGG + chr1_3:63554551-63554570 None:intergenic 25.0%
!!! TATTGTTTGTTGGTTTGTTT+TGG - chr1_3:63554631-63554650 Msa0132490:intron 25.0%
! CAGTTATATTGTTTACCAAA+AGG + chr1_3:63554658-63554677 None:intergenic 25.0%
! AAACACTTAAAAATGAACTG+GGG + chr1_3:63554931-63554950 None:intergenic 25.0%
! TATTAAGGGACAATAAAAAG+TGG + chr1_3:63555002-63555021 None:intergenic 25.0%
!! AAAGTTTTTCACAAATACCA+AGG + chr1_3:63555446-63555465 None:intergenic 25.0%
! AAACCAACACTTAAAAGAAA+TGG - chr1_3:63555466-63555485 Msa0132490:intron 25.0%
!!! TGTTAGAATTTTTTATACCC+TGG + chr1_3:63555560-63555579 None:intergenic 25.0%
! TATAAACACAATGTAATTGC+AGG + chr1_3:63555742-63555761 None:intergenic 25.0%
! TTACTATCAATTAGTATGCT+TGG - chr1_3:63555907-63555926 Msa0132490:intron 25.0%
! TACTATCAATTAGTATGCTT+GGG - chr1_3:63555908-63555927 Msa0132490:intron 25.0%
! TTAGGTTATAAAGGTAGATT+TGG - chr1_3:63556270-63556289 Msa0132490:intron 25.0%
! TAGGTTATAAAGGTAGATTT+GGG - chr1_3:63556271-63556290 Msa0132490:intron 25.0%
!!! TTTTGTAGTGTGTTTTAACA+TGG + chr1_3:63556649-63556668 None:intergenic 25.0%
!! TAATTTTTGACACACTAGTA+TGG - chr1_3:63556686-63556705 Msa0132490:intron 25.0%
! TACACATATAGTACATTGTA+GGG + chr1_3:63556845-63556864 None:intergenic 25.0%
! TGATATGGAAAATCAAGAAT+AGG - chr1_3:63556919-63556938 Msa0132490:intron 25.0%
! GATATGGAAAATCAAGAATA+GGG - chr1_3:63556920-63556939 Msa0132490:intron 25.0%
! AGAGATACAAAAGAATAGTT+TGG - chr1_3:63556967-63556986 Msa0132490:intron 25.0%
! ATAGATAGCTAACATCTATT+AGG + chr1_3:63557073-63557092 None:intergenic 25.0%
!!! TTTTATTTGTGTGTAGCTTA+TGG - chr1_3:63557117-63557136 Msa0132490:intron 25.0%
! GATTGTGGGAAATAATAAAA+TGG - chr1_3:63557249-63557268 Msa0132490:intron 25.0%
!! AATCAAAATAGTTAGTCTCA+AGG - chr1_3:63557294-63557313 Msa0132490:intron 25.0%
!! ATCAAAATAGTTAGTCTCAA+GGG - chr1_3:63557295-63557314 Msa0132490:intron 25.0%
!! AATGTCTTTTGCTCATTTTA+TGG - chr1_3:63557376-63557395 Msa0132490:CDS 25.0%
! TACATTGTATCTAAACTACA+TGG + chr1_3:63557429-63557448 None:intergenic 25.0%
! ATGTAGTTTAGATACAATGT+AGG - chr1_3:63557428-63557447 Msa0132490:CDS 25.0%
! TTAGTGAGATGCTATTATTT+AGG - chr1_3:63557537-63557556 Msa0132490:CDS 25.0%
!!! GATTAGATACAACTTTGTTT+TGG - chr1_3:63557890-63557909 Msa0132490:five_prime_UTR 25.0%
! TGAAATTGGGATTGTGATTT+TGG + chr1_3:63552740-63552759 None:intergenic 30.0%
TCTTAGATCTATTCTATCCA+TGG - chr1_3:63552771-63552790 Msa0132490:three_prime_UTR 30.0%
AAGGAATTGAAAACGTTGAT+GGG - chr1_3:63553136-63553155 Msa0132490:three_prime_UTR 30.0%
GTCTGATATGTTATGATACA+CGG - chr1_3:63553368-63553387 Msa0132490:three_prime_UTR 30.0%
!!! TGCTTTTGTTTTTGTGATGT+GGG - chr1_3:63553529-63553548 Msa0132490:intron 30.0%
!!! TGGGTTTTTGACTTTTGTTT+TGG - chr1_3:63553548-63553567 Msa0132490:intron 30.0%
! ATTTAAACTTTGTTGTCGGT+AGG - chr1_3:63553823-63553842 Msa0132490:intron 30.0%
! TAGGATTTAAAGTAGGGTTA+GGG - chr1_3:63553842-63553861 Msa0132490:intron 30.0%
GAGATTGCTGTCAATTAATT+TGG - chr1_3:63553884-63553903 Msa0132490:intron 30.0%
! TTTGGCAGTTTTCGATTTAA+GGG - chr1_3:63553967-63553986 Msa0132490:intron 30.0%
!! AGGATTTCAATAATGGACAT+TGG + chr1_3:63554230-63554249 None:intergenic 30.0%
AAAACTAATTGCACAGTCAA+AGG + chr1_3:63554291-63554310 None:intergenic 30.0%
!!! TGTGCAATTAGTTTTTACGT+GGG - chr1_3:63554296-63554315 Msa0132490:intron 30.0%
!!! TTTTAGGACTGAATTCTATG+AGG + chr1_3:63554337-63554356 None:intergenic 30.0%
ATGTGTTAGGAGAACAAAAA+AGG + chr1_3:63554392-63554411 None:intergenic 30.0%
AACAGATAATATTCTTGTGC+AGG - chr1_3:63554558-63554577 Msa0132490:intron 30.0%
TACTGATGAATATGTTGTCT+TGG - chr1_3:63554749-63554768 Msa0132490:intron 30.0%
! AGTTTTCGTTCTTAAATGTG+AGG - chr1_3:63554802-63554821 Msa0132490:intron 30.0%
! TTTTACTTCCAATATGCCAT+TGG - chr1_3:63554841-63554860 Msa0132490:intron 30.0%
GAGGAATTTATGTTTCTCAA+TGG + chr1_3:63555091-63555110 None:intergenic 30.0%
GGTATTAAGAAAAGTAGTTG+TGG + chr1_3:63555215-63555234 None:intergenic 30.0%
TTAATACCCTTGAACTTTGT+TGG - chr1_3:63555227-63555246 Msa0132490:intron 30.0%
!! TCTCCATTTCTTTTAAGTGT+TGG + chr1_3:63555472-63555491 None:intergenic 30.0%
!!! CCTAATTGACAGTTTTTTGT+TGG + chr1_3:63555657-63555676 None:intergenic 30.0%
CCAACAAAAAACTGTCAATT+AGG - chr1_3:63555654-63555673 Msa0132490:intron 30.0%
!!! TTTCTTTTTTTAGTAGCCAG+CGG - chr1_3:63556140-63556159 Msa0132490:intron 30.0%
AGGTTATAAAGGTAGATTTG+GGG - chr1_3:63556272-63556291 Msa0132490:intron 30.0%
ATTAGCAAATTGCTCATGTA+GGG + chr1_3:63556401-63556420 None:intergenic 30.0%
GATATCATCACAGAACATTA+TGG - chr1_3:63556546-63556565 Msa0132490:intron 30.0%
GTACACATATAGTACATTGT+AGG + chr1_3:63556846-63556865 None:intergenic 30.0%
!! GCACATGTTTTATTAGTTGA+AGG - chr1_3:63556885-63556904 Msa0132490:intron 30.0%
AAGGTTACTTGCATATGATA+TGG - chr1_3:63556904-63556923 Msa0132490:intron 30.0%
AACAGCAAACAAACTTCATA+AGG + chr1_3:63557027-63557046 None:intergenic 30.0%
TGTTAGCTATCTATAGTGAT+TGG - chr1_3:63557079-63557098 Msa0132490:intron 30.0%
AAGCTACACACAAATAAAAC+AGG + chr1_3:63557116-63557135 None:intergenic 30.0%
GGTTAATGATAAGAGATAGA+AGG - chr1_3:63557325-63557344 Msa0132490:CDS 30.0%
ATTTCTTATGTACTCCATTC+AGG + chr1_3:63557359-63557378 None:intergenic 30.0%
TAAAAGCAGAATTGTGAAGT+TGG - chr1_3:63557402-63557421 Msa0132490:CDS 30.0%
CAGTACAACTAAATTTACCA+AGG + chr1_3:63557661-63557680 None:intergenic 30.0%
ATAAATTCCTCAAAAAGACG+AGG + chr1_3:63557695-63557714 None:intergenic 30.0%
ATTTATCTTACTTTGACCAC+TGG - chr1_3:63557709-63557728 Msa0132490:CDS 30.0%
!!! CAACTTTGTTTTGGTATCTT+AGG - chr1_3:63557899-63557918 Msa0132490:five_prime_UTR 30.0%
ACACTTCCTCCAAATATATT+AGG + chr1_3:63557992-63558011 None:intergenic 30.0%
TAATATATTTGGAGGAAGTG+TGG - chr1_3:63557991-63558010 Msa0132490:five_prime_UTR 30.0%
AAAAACAGAATCGAGACAAG+TGG - chr1_3:63552631-63552650 Msa0132490:three_prime_UTR 35.0%
CAAGGAATTGAAAACGTTGA+TGG - chr1_3:63553135-63553154 Msa0132490:three_prime_UTR 35.0%
! AATTGAAAACGTTGATGGGT+CGG - chr1_3:63553140-63553159 Msa0132490:three_prime_UTR 35.0%
TTATCCAATTGCTCCATAAC+AGG + chr1_3:63553258-63553277 None:intergenic 35.0%
!!! GTGCTTTTGTTTTTGTGATG+TGG - chr1_3:63553528-63553547 Msa0132490:intron 35.0%
! GTGATTTTAGGCTTATCAAG+TGG - chr1_3:63553577-63553596 Msa0132490:intron 35.0%
TTAGGCTTATCAAGTGGAAT+TGG - chr1_3:63553583-63553602 Msa0132490:intron 35.0%
!! GGAAAATGACAAGTTGATGA+AGG - chr1_3:63553631-63553650 Msa0132490:intron 35.0%
!! TGACAAGTTGATGAAGGAAA+AGG - chr1_3:63553637-63553656 Msa0132490:intron 35.0%
! CAAAGACGGTTTTACCATTT+CGG + chr1_3:63553766-63553785 None:intergenic 35.0%
ACCATCATCAATTCCAAAGA+CGG + chr1_3:63553780-63553799 None:intergenic 35.0%
! TTGTCGGTAGGATTTAAAGT+AGG - chr1_3:63553835-63553854 Msa0132490:intron 35.0%
! TGTCGGTAGGATTTAAAGTA+GGG - chr1_3:63553836-63553855 Msa0132490:intron 35.0%
! GTAGGATTTAAAGTAGGGTT+AGG - chr1_3:63553841-63553860 Msa0132490:intron 35.0%
! TGATGATTTTTCACGACAGA+GGG - chr1_3:63553935-63553954 Msa0132490:intron 35.0%
! GTTTGGCAGTTTTCGATTTA+AGG - chr1_3:63553966-63553985 Msa0132490:intron 35.0%
TACAAGGCAAACATTCTTTG+TGG - chr1_3:63554114-63554133 Msa0132490:intron 35.0%
AACCATTCGACTCTGATTAA+GGG - chr1_3:63554152-63554171 Msa0132490:intron 35.0%
!!! CTGTGCAATTAGTTTTTACG+TGG - chr1_3:63554295-63554314 Msa0132490:intron 35.0%
TACGTGGGTAATTTCCATAA+CGG - chr1_3:63554311-63554330 Msa0132490:intron 35.0%
AGAACAAAAAAGGAACTTCG+TGG + chr1_3:63554382-63554401 None:intergenic 35.0%
ATTATCTGTTAGATGTCAGG+AGG + chr1_3:63554548-63554567 None:intergenic 35.0%
!!! TTGGTTTGTTTTGGACCTTT+TGG - chr1_3:63554640-63554659 Msa0132490:intron 35.0%
CTTCAGCTATGGTATCAAAT+GGG + chr1_3:63554713-63554732 None:intergenic 35.0%
TCTTCAGCTATGGTATCAAA+TGG + chr1_3:63554714-63554733 None:intergenic 35.0%
AGAAGAAACCAATGGCATAT+TGG + chr1_3:63554852-63554871 None:intergenic 35.0%
CTTGATGTAGAAGAAACCAA+TGG + chr1_3:63554860-63554879 None:intergenic 35.0%
GTCTTATAATTAGAGGCAGA+GGG + chr1_3:63554973-63554992 None:intergenic 35.0%
! GAAAGGGGTCTTATAATTAG+AGG + chr1_3:63554980-63554999 None:intergenic 35.0%
GGACAATAAAAAGTGGAAAG+GGG + chr1_3:63554995-63555014 None:intergenic 35.0%
GGGACAATAAAAAGTGGAAA+GGG + chr1_3:63554996-63555015 None:intergenic 35.0%
AGGGACAATAAAAAGTGGAA+AGG + chr1_3:63554997-63555016 None:intergenic 35.0%
! TTCTCAATGGTGCTTTAAAC+AGG + chr1_3:63555078-63555097 None:intergenic 35.0%
! TGTTGGAGAGTCTTATGATA+AGG - chr1_3:63555244-63555263 Msa0132490:intron 35.0%
! GTTGGAGAGTCTTATGATAA+GGG - chr1_3:63555245-63555264 Msa0132490:intron 35.0%
ATGCAGCAACATATGTATAG+AGG - chr1_3:63555585-63555604 Msa0132490:intron 35.0%
TGCAGCAACATATGTATAGA+GGG - chr1_3:63555586-63555605 Msa0132490:intron 35.0%
TCAGGATATGAGTTACATCT+TGG + chr1_3:63555623-63555642 None:intergenic 35.0%
TTGTTGGACTGAAATCATTC+AGG + chr1_3:63555641-63555660 None:intergenic 35.0%
AATCTAGTGCAAGAGATAAC+CGG + chr1_3:63555808-63555827 None:intergenic 35.0%
AATTAGTATGCTTGGGAAGA+GGG - chr1_3:63555915-63555934 Msa0132490:intron 35.0%
! CTTTTGTCTTGCTGCATAAA+TGG + chr1_3:63555975-63555994 None:intergenic 35.0%
ATGCAGCAAGACAAAAGTTA+TGG - chr1_3:63555978-63555997 Msa0132490:intron 35.0%
TGCAGCAAGACAAAAGTTAT+GGG - chr1_3:63555979-63555998 Msa0132490:intron 35.0%
! TTGGTGGACAGAAATCATTA+AGG - chr1_3:63556017-63556036 Msa0132490:intron 35.0%
GTTGTTTAGAGGAAGCAAAT+AGG + chr1_3:63556115-63556134 None:intergenic 35.0%
AAGAAATCGCAGTTGTTTAG+AGG + chr1_3:63556126-63556145 None:intergenic 35.0%
!!! CTCATTTTGGGGTTTAAGAT+TGG + chr1_3:63556240-63556259 None:intergenic 35.0%
CATTAGCAAATTGCTCATGT+AGG + chr1_3:63556402-63556421 None:intergenic 35.0%
!! AGCAATTTGCTAATGTGCTA+TGG - chr1_3:63556407-63556426 Msa0132490:intron 35.0%
!! GCAATTTGCTAATGTGCTAT+GGG - chr1_3:63556408-63556427 Msa0132490:intron 35.0%
GAGAGACTACAGAAAACTAT+AGG - chr1_3:63556480-63556499 Msa0132490:intron 35.0%
ATAGCTAACATCTATTAGGC+TGG + chr1_3:63557069-63557088 None:intergenic 35.0%
AAATATGATCTACCACTGCA+AGG + chr1_3:63557203-63557222 None:intergenic 35.0%
AAGATGTGAACTGAAGATTG+TGG - chr1_3:63557234-63557253 Msa0132490:intron 35.0%
AGATGTGAACTGAAGATTGT+GGG - chr1_3:63557235-63557254 Msa0132490:intron 35.0%
ACGACTATATGATGTAGTCA+CGG - chr1_3:63557513-63557532 Msa0132490:CDS 35.0%
TATTAACCATCACTGACATG+TGG - chr1_3:63557630-63557649 Msa0132490:CDS 35.0%
! TAATAGTCCTCGTCTTTTTG+AGG - chr1_3:63557685-63557704 Msa0132490:CDS 35.0%
!! TAGTCTTGTTGAGGATGTTA+AGG - chr1_3:63557743-63557762 Msa0132490:CDS 35.0%
! GTTGTGAAATAGTTTGCATG+AGG - chr1_3:63557765-63557784 Msa0132490:CDS 35.0%
! TGAAATAGTTTGCATGAGGA+AGG - chr1_3:63557769-63557788 Msa0132490:CDS 35.0%
GATTTGATCGTCGAGGAAAT+TGG + chr1_3:63552866-63552885 None:intergenic 40.0%
! GAGGATTTTCTTGTGAAAGC+TGG - chr1_3:63553012-63553031 Msa0132490:three_prime_UTR 40.0%
! TTTTCTTGTGAAAGCTGGTG+CGG - chr1_3:63553017-63553036 Msa0132490:three_prime_UTR 40.0%
GAAGATGACGATTCCGTTAT+CGG - chr1_3:63553068-63553087 Msa0132490:three_prime_UTR 40.0%
!!! TGGTAGTGGTATGTTTTCGT+TGG - chr1_3:63553101-63553120 Msa0132490:three_prime_UTR 40.0%
!! TCGTTGGATTCGAGTTTTCA+AGG - chr1_3:63553117-63553136 Msa0132490:three_prime_UTR 40.0%
AATGGCAATGGGAATGTGAA+TGG - chr1_3:63553189-63553208 Msa0132490:three_prime_UTR 40.0%
ATGGCAATGGGAATGTGAAT+GGG - chr1_3:63553190-63553209 Msa0132490:three_prime_UTR 40.0%
AGAATAGAGAATCTGCTGCT+AGG - chr1_3:63553310-63553329 Msa0132490:three_prime_UTR 40.0%
ATGTTATGATACACGGACAC+CGG - chr1_3:63553375-63553394 Msa0132490:three_prime_UTR 40.0%
CAAATGTGTCAGTGTTGTGT+TGG - chr1_3:63553442-63553461 Msa0132490:CDS 40.0%
GTTGGACTAAAAACACGTGT+CGG - chr1_3:63553460-63553479 Msa0132490:CDS 40.0%
TAAAAACACGTGTCGGATAC+AGG - chr1_3:63553467-63553486 Msa0132490:CDS 40.0%
CGAAATGGTAAAACCGTCTT+TGG - chr1_3:63553764-63553783 Msa0132490:intron 40.0%
!! ACCGTCTTTGGAATTGATGA+TGG - chr1_3:63553776-63553795 Msa0132490:intron 40.0%
!! TTGGAATTGATGATGGTCTG+TGG - chr1_3:63553783-63553802 Msa0132490:intron 40.0%
! GTGATGATTTTTCACGACAG+AGG - chr1_3:63553934-63553953 Msa0132490:intron 40.0%
TTGCTGTGGTTAATGCTACA+AGG - chr1_3:63554098-63554117 Msa0132490:intron 40.0%
GAACCATTCGACTCTGATTA+AGG - chr1_3:63554151-63554170 Msa0132490:intron 40.0%
! GTTGTGCTTGTTAACAGAAG+TGG - chr1_3:63554200-63554219 Msa0132490:intron 40.0%
TGAATTCTATGAGGCCGTTA+TGG + chr1_3:63554328-63554347 None:intergenic 40.0%
!! AATGTTTCTTGGAGCACTGT+TGG - chr1_3:63554440-63554459 Msa0132490:intron 40.0%
CTGAAAATTCAAAGGGTTGC+AGG + chr1_3:63554497-63554516 None:intergenic 40.0%
GCTATGGTATCAAATGGGAA+AGG + chr1_3:63554708-63554727 None:intergenic 40.0%
TAGCAAGCAATCTTCAGCTA+TGG + chr1_3:63554724-63554743 None:intergenic 40.0%
! GGTCTTATAATTAGAGGCAG+AGG + chr1_3:63554974-63554993 None:intergenic 40.0%
GACTCTCCAACAAAGTTCAA+GGG + chr1_3:63555236-63555255 None:intergenic 40.0%
AGACTCTCCAACAAAGTTCA+AGG + chr1_3:63555237-63555256 None:intergenic 40.0%
! GAGAGTCTTATGATAAGGGA+CGG - chr1_3:63555249-63555268 Msa0132490:intron 40.0%
AATCACTAGTTGACGTGTAG+TGG - chr1_3:63555528-63555547 Msa0132490:intron 40.0%
AAACTGTCAATTAGGTGCAC+TGG - chr1_3:63555662-63555681 Msa0132490:intron 40.0%
AATCACGGAAAAACCCACTT+TGG - chr1_3:63555762-63555781 Msa0132490:intron 40.0%
GAGATAACCGGTTATCATCT+CGG + chr1_3:63555796-63555815 None:intergenic 40.0%
CTTCACTAGTAGGCAATGAA+AGG + chr1_3:63555881-63555900 None:intergenic 40.0%
TTCATTGCCTACTAGTGAAG+AGG - chr1_3:63555881-63555900 Msa0132490:intron 40.0%
TCATTGCCTACTAGTGAAGA+GGG - chr1_3:63555882-63555901 Msa0132490:intron 40.0%
GTAATACCCTCTTCACTAGT+AGG + chr1_3:63555891-63555910 None:intergenic 40.0%
CAATTAGTATGCTTGGGAAG+AGG - chr1_3:63555914-63555933 Msa0132490:intron 40.0%
CAAACCACCAAAGTTCATTC+AGG - chr1_3:63555946-63555965 Msa0132490:intron 40.0%
ATGGATGCCTGAATGAACTT+TGG + chr1_3:63555956-63555975 None:intergenic 40.0%
TGACACTATAGCGTCACTAT+TGG - chr1_3:63556199-63556218 Msa0132490:intron 40.0%
GACACTATAGCGTCACTATT+GGG - chr1_3:63556200-63556219 Msa0132490:intron 40.0%
!!! GTGGTATTGGCTCTTTTACA+TGG + chr1_3:63556583-63556602 None:intergenic 40.0%
! CAAAATCTTTTCCCACTAGG+TGG + chr1_3:63556602-63556621 None:intergenic 40.0%
! CACCTAGTGGGAAAAGATTT+TGG - chr1_3:63556600-63556619 Msa0132490:intron 40.0%
! CACCAAAATCTTTTCCCACT+AGG + chr1_3:63556605-63556624 None:intergenic 40.0%
! CTAGTGGGAAAAGATTTTGG+TGG - chr1_3:63556603-63556622 Msa0132490:intron 40.0%
GGAAAAAGTGATTCCTGTTG+TGG - chr1_3:63557138-63557157 Msa0132490:intron 40.0%
CAGTGGTAGATCATATTTGC+TGG - chr1_3:63557205-63557224 Msa0132490:intron 40.0%
! TGGTAGATCATATTTGCTGG+TGG - chr1_3:63557208-63557227 Msa0132490:intron 40.0%
AGAAGGAATCAGTACCTGAA+TGG - chr1_3:63557342-63557361 Msa0132490:CDS 40.0%
TAGATACAATGTAGGCATCC+TGG - chr1_3:63557436-63557455 Msa0132490:CDS 40.0%
ACTGCAAATGTGCTAGTAGA+GGG - chr1_3:63557475-63557494 Msa0132490:CDS 40.0%
CAAGCACAGAAGTTTCAAGA+CGG + chr1_3:63557598-63557617 None:intergenic 40.0%
TATCTTACTTTGACCACTGG+TGG - chr1_3:63557712-63557731 Msa0132490:CDS 40.0%
TTGCATGAGGAAGGTAGAAT+AGG - chr1_3:63557778-63557797 Msa0132490:CDS 40.0%
AGCAGAATTTCGACAGACAA+AGG - chr1_3:63557864-63557883 Msa0132490:five_prime_UTR 40.0%
GCGAGTGTAAAGAGGTAGTT+GGG - chr1_3:63552653-63552672 Msa0132490:three_prime_UTR 45.0%
TTCTGACAGTGTAGAAGCTG+CGG + chr1_3:63552688-63552707 None:intergenic 45.0%
AGATGGAGAAGAAGGTGGAT+CGG + chr1_3:63552821-63552840 None:intergenic 45.0%
TTAGGAGATGGAGAAGAAGG+TGG + chr1_3:63552826-63552845 None:intergenic 45.0%
GGTTTAGGAGATGGAGAAGA+AGG + chr1_3:63552829-63552848 None:intergenic 45.0%
GTGAAGTGAGGTTTAGGAGA+TGG + chr1_3:63552838-63552857 None:intergenic 45.0%
TTGATCGTCGAGGAAATTGG+CGG + chr1_3:63552863-63552882 None:intergenic 45.0%
TTCTTTACACTCCCTATCGC+CGG + chr1_3:63552965-63552984 None:intergenic 45.0%
ATAGGGTTTGGGAATGGGAA+TGG - chr1_3:63553165-63553184 Msa0132490:three_prime_UTR 45.0%
TAGGGTTTGGGAATGGGAAT+GGG - chr1_3:63553166-63553185 Msa0132490:three_prime_UTR 45.0%
TTTGGGAATGGGAATGGGAA+TGG - chr1_3:63553171-63553190 Msa0132490:three_prime_UTR 45.0%
AATGGGAATGGGAATGGCAA+TGG - chr1_3:63553177-63553196 Msa0132490:three_prime_UTR 45.0%
ATGGGAATGGGAATGGCAAT+GGG - chr1_3:63553178-63553197 Msa0132490:three_prime_UTR 45.0%
TGGCAATGGGAATGTGAATG+GGG - chr1_3:63553191-63553210 Msa0132490:three_prime_UTR 45.0%
GAATGTGAATGGGGTGGAAA+TGG - chr1_3:63553200-63553219 Msa0132490:three_prime_UTR 45.0%
AATGGGGTGGAAATGGTTGA+AGG - chr1_3:63553207-63553226 Msa0132490:three_prime_UTR 45.0%
AGAATCTGCTGCTAGGTCTA+GGG - chr1_3:63553317-63553336 Msa0132490:three_prime_UTR 45.0%
TCAAGTGGAATTGGAGTCCT+TGG - chr1_3:63553592-63553611 Msa0132490:intron 45.0%
GACAGAGGGACAAAGTTGTT+TGG - chr1_3:63553949-63553968 Msa0132490:intron 45.0%
CAAGCAGCTGATCGAAAATG+TGG + chr1_3:63554074-63554093 None:intergenic 45.0%
GTCCCTTAATCAGAGTCGAA+TGG + chr1_3:63554157-63554176 None:intergenic 45.0%
CAAGCATGGTAGCATGTGTT+AGG + chr1_3:63554405-63554424 None:intergenic 45.0%
ATATTCTTGTGCAGGCTGAG+AGG - chr1_3:63554566-63554585 Msa0132490:intron 45.0%
GAAAAAGGAGAGGTTCAAGC+AGG - chr1_3:63554588-63554607 Msa0132490:intron 45.0%
ATAACCGGTTATCATCTCGG+TGG + chr1_3:63555793-63555812 None:intergenic 45.0%
ACTTGTGCAGTAGAGACATC+TGG + chr1_3:63555846-63555865 None:intergenic 45.0%
GATGCCTGAATGAACTTTGG+TGG + chr1_3:63555953-63555972 None:intergenic 45.0%
!!! TGGGCTGCTCGTTAGTTTTT+TGG - chr1_3:63555998-63556017 Msa0132490:intron 45.0%
!!! GCTGCTCGTTAGTTTTTTGG+TGG - chr1_3:63556001-63556020 Msa0132490:intron 45.0%
!!! CTTTTTTTAGTAGCCAGCGG+TGG - chr1_3:63556143-63556162 Msa0132490:intron 45.0%
! TCACTATTGGGTTGCAAGAG+TGG - chr1_3:63556212-63556231 Msa0132490:intron 45.0%
TTGCTAATGTGCTATGGGAC+TGG - chr1_3:63556413-63556432 Msa0132490:intron 45.0%
AAAGAGCCAATACCACCTAG+TGG - chr1_3:63556587-63556606 Msa0132490:intron 45.0%
AAGAGCCAATACCACCTAGT+GGG - chr1_3:63556588-63556607 Msa0132490:intron 45.0%
! CTTTTCCCACTAGGTGGTAT+TGG + chr1_3:63556596-63556615 None:intergenic 45.0%
! GTTAGTCTCAAGGGTAACTG+TGG - chr1_3:63557304-63557323 Msa0132490:CDS 45.0%
GACTGCAAATGTGCTAGTAG+AGG - chr1_3:63557474-63557493 Msa0132490:CDS 45.0%
AATGTGCTAGTAGAGGGCAA+AGG - chr1_3:63557481-63557500 Msa0132490:CDS 45.0%
ATGTGCTAGTAGAGGGCAAA+GGG - chr1_3:63557482-63557501 Msa0132490:CDS 45.0%
!! GTGCTCTTGTAGTCTTGTTG+AGG - chr1_3:63557734-63557753 Msa0132490:CDS 45.0%
TCTGTCGAAATTCTGCTGCT+AGG + chr1_3:63557861-63557880 None:intergenic 45.0%
GACAAGTGGCGAGTGTAAAG+AGG - chr1_3:63552645-63552664 Msa0132490:three_prime_UTR 50.0%
GGCGAGTGTAAAGAGGTAGT+TGG - chr1_3:63552652-63552671 Msa0132490:three_prime_UTR 50.0%
CATGAGCTTGGAAGAAGCCA+TGG + chr1_3:63552791-63552810 None:intergenic 50.0%
! ATCGGAAGAAGGCATGAGCT+TGG + chr1_3:63552803-63552822 None:intergenic 50.0%
GAAGAAGGTGGATCGGAAGA+AGG + chr1_3:63552814-63552833 None:intergenic 50.0%
AAATTGGCGGTGGTGAAGTG+AGG + chr1_3:63552850-63552869 None:intergenic 50.0%
! TTCCGATGAGATGATGACGC+TGG - chr1_3:63552990-63553009 Msa0132490:three_prime_UTR 50.0%
CTCCAGCGTCATCATCTCAT+CGG + chr1_3:63552995-63553014 None:intergenic 50.0%
! AACGTTGATGGGTCGGTGAT+AGG - chr1_3:63553147-63553166 Msa0132490:three_prime_UTR 50.0%
! ACGTTGATGGGTCGGTGATA+GGG - chr1_3:63553148-63553167 Msa0132490:three_prime_UTR 50.0%
ATGGGTCGGTGATAGGGTTT+GGG - chr1_3:63553154-63553173 Msa0132490:three_prime_UTR 50.0%
TCGGTGATAGGGTTTGGGAA+TGG - chr1_3:63553159-63553178 Msa0132490:three_prime_UTR 50.0%
CGGTGATAGGGTTTGGGAAT+GGG - chr1_3:63553160-63553179 Msa0132490:three_prime_UTR 50.0%
CAATGGGAATGTGAATGGGG+TGG - chr1_3:63553194-63553213 Msa0132490:three_prime_UTR 50.0%
GGGTGGAAATGGTTGAAGGT+GGG - chr1_3:63553211-63553230 Msa0132490:three_prime_UTR 50.0%
GGTGGAAATGGTTGAAGGTG+GGG - chr1_3:63553212-63553231 Msa0132490:three_prime_UTR 50.0%
GTGGAAATGGTTGAAGGTGG+GGG - chr1_3:63553213-63553232 Msa0132490:three_prime_UTR 50.0%
TGGAAATGGTTGAAGGTGGG+GGG - chr1_3:63553214-63553233 Msa0132490:three_prime_UTR 50.0%
ACGGCCTGTTATGGAGCAAT+TGG - chr1_3:63553251-63553270 Msa0132490:three_prime_UTR 50.0%
GAGAATCTGCTGCTAGGTCT+AGG - chr1_3:63553316-63553335 Msa0132490:three_prime_UTR 50.0%
ACTCGTGTCAGTGTCATGTC+CGG + chr1_3:63553397-63553416 None:intergenic 50.0%
AGTGGAATTGGAGTCCTTGG+CGG - chr1_3:63553595-63553614 Msa0132490:intron 50.0%
!!! CAGCTGCTTGCTTTTTGCTG+TGG - chr1_3:63554084-63554103 Msa0132490:intron 50.0%
TGTGCAGGCTGAGAGGAAAA+AGG - chr1_3:63554573-63554592 Msa0132490:intron 50.0%
AGGCTGAGAGGAAAAAGGAG+AGG - chr1_3:63554578-63554597 Msa0132490:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_3:63555108-63555127 None:intergenic 50.0%
! GTCAATTAGGTGCACTGGTC+AGG - chr1_3:63555667-63555686 Msa0132490:intron 50.0%
TGCAGACCGCATCACATGAT+GGG - chr1_3:63555699-63555718 Msa0132490:intron 50.0%
! ATCACATGATGGGGTCCACA+GGG - chr1_3:63555709-63555728 Msa0132490:intron 50.0%
CACACCACCGAGATGATAAC+CGG - chr1_3:63555786-63555805 Msa0132490:intron 50.0%
CTAATGTGCTATGGGACTGG+TGG - chr1_3:63556416-63556435 Msa0132490:intron 50.0%
CACATTTGCAGTCTGCACAG+GGG + chr1_3:63557467-63557486 None:intergenic 50.0%
GCACATTTGCAGTCTGCACA+GGG + chr1_3:63557468-63557487 None:intergenic 50.0%
AGCACATTTGCAGTCTGCAC+AGG + chr1_3:63557469-63557488 None:intergenic 50.0%
TGTGCTAGTAGAGGGCAAAG+GGG - chr1_3:63557483-63557502 Msa0132490:CDS 50.0%
GCATCTCCACATGTCAGTGA+TGG + chr1_3:63557639-63557658 None:intergenic 50.0%
ACTGACATGTGGAGATGCCT+TGG - chr1_3:63557641-63557660 Msa0132490:CDS 50.0%
GCGGTGGTGAAGTGAGGTTT+AGG + chr1_3:63552844-63552863 None:intergenic 55.0%
ATCGTCGAGGAAATTGGCGG+TGG + chr1_3:63552860-63552879 None:intergenic 55.0%
CGAGGGAGATTTGATCGTCG+AGG + chr1_3:63552873-63552892 None:intergenic 55.0%
CGATGTGATCTCCGGCGATA+GGG - chr1_3:63552951-63552970 Msa0132490:three_prime_UTR 55.0%
! CGATGAGATGATGACGCTGG+AGG - chr1_3:63552993-63553012 Msa0132490:three_prime_UTR 55.0%
TGTGAAAGCTGGTGCGGTTG+AGG - chr1_3:63553023-63553042 Msa0132490:three_prime_UTR 55.0%
CCACTGAGCGTCTCCGATAA+CGG + chr1_3:63553084-63553103 None:intergenic 55.0%
GATGGGTCGGTGATAGGGTT+TGG - chr1_3:63553153-63553172 Msa0132490:three_prime_UTR 55.0%
GGGGTGGAAATGGTTGAAGG+TGG - chr1_3:63553210-63553229 Msa0132490:three_prime_UTR 55.0%
AAATGGTTGAAGGTGGGGGG+AGG - chr1_3:63553217-63553236 Msa0132490:three_prime_UTR 55.0%
AATGGTTGAAGGTGGGGGGA+GGG - chr1_3:63553218-63553237 Msa0132490:three_prime_UTR 55.0%
GAAGAGAGGACGGCCTGTTA+TGG - chr1_3:63553242-63553261 Msa0132490:three_prime_UTR 55.0%
AAGCTGCTCAGCAGAGACAG+AGG - chr1_3:63553277-63553296 Msa0132490:three_prime_UTR 55.0%
TAGGTCTAGGGAACGCAAGC+AGG - chr1_3:63553329-63553348 Msa0132490:three_prime_UTR 55.0%
ACGTGTAGTGGCAGCAACCA+GGG - chr1_3:63555540-63555559 Msa0132490:intron 55.0%
CTGCAGACCGCATCACATGA+TGG - chr1_3:63555698-63555717 Msa0132490:intron 55.0%
GCAGACCGCATCACATGATG+GGG - chr1_3:63555700-63555719 Msa0132490:intron 55.0%
GTGGACCCCATCATGTGATG+CGG + chr1_3:63555708-63555727 None:intergenic 55.0%
! CATCACATGATGGGGTCCAC+AGG - chr1_3:63555708-63555727 Msa0132490:intron 55.0%
! TCACATGATGGGGTCCACAG+GGG - chr1_3:63555710-63555729 Msa0132490:intron 55.0%
CGGTTATCATCTCGGTGGTG+TGG + chr1_3:63555788-63555807 None:intergenic 55.0%
TTCCTGTTGTGGAGCAGCGA+AGG - chr1_3:63557149-63557168 Msa0132490:intron 55.0%
ACTGCAAGGAGCGAACCCTA+CGG + chr1_3:63557189-63557208 None:intergenic 55.0%
!! GACTACAAGAGCACCACCAG+TGG + chr1_3:63557728-63557747 None:intergenic 55.0%
ATCGTCGACGGTTCGAGGAG+TGG + chr1_3:63552908-63552927 None:intergenic 60.0%
CAGACATCGTCGACGGTTCG+AGG + chr1_3:63552913-63552932 None:intergenic 60.0%
CTCGAACCGTCGACGATGTC+TGG - chr1_3:63552911-63552930 Msa0132490:three_prime_UTR 60.0%
CTCTCGCCAGACATCGTCGA+CGG + chr1_3:63552920-63552939 None:intergenic 60.0%
ATCGCCGGAGATCACATCGC+CGG + chr1_3:63552950-63552969 None:intergenic 60.0%
GCGATGTGATCTCCGGCGAT+AGG - chr1_3:63552950-63552969 Msa0132490:three_prime_UTR 60.0%
AGCTGGTGCGGTTGAGGATG+AGG - chr1_3:63553029-63553048 Msa0132490:three_prime_UTR 60.0%
TGGTGCGGTTGAGGATGAGG+AGG - chr1_3:63553032-63553051 Msa0132490:three_prime_UTR 60.0%
TGCGGTTGAGGATGAGGAGG+AGG - chr1_3:63553035-63553054 Msa0132490:three_prime_UTR 60.0%
GCGGTTGAGGATGAGGAGGA+GGG - chr1_3:63553036-63553055 Msa0132490:three_prime_UTR 60.0%
TGAGGATGAGGAGGAGGGTG+AGG - chr1_3:63553041-63553060 Msa0132490:three_prime_UTR 60.0%
CCGTTATCGGAGACGCTCAG+TGG - chr1_3:63553081-63553100 Msa0132490:three_prime_UTR 60.0%
TCGGAGACGCTCAGTGGTAG+TGG - chr1_3:63553087-63553106 Msa0132490:three_prime_UTR 60.0%
ATGGTTGAAGGTGGGGGGAG+GGG - chr1_3:63553219-63553238 Msa0132490:three_prime_UTR 60.0%
GTCCTTGGCGGTGAAGCTAG+AGG - chr1_3:63553607-63553626 Msa0132490:intron 60.0%
! CTCCTCTAGCTTCACCGCCA+AGG + chr1_3:63553612-63553631 None:intergenic 60.0%
CTTGGCGGTGAAGCTAGAGG+AGG - chr1_3:63553610-63553629 Msa0132490:intron 60.0%
GACGTGTAGTGGCAGCAACC+AGG - chr1_3:63555539-63555558 Msa0132490:intron 60.0%
ATTGCAGGCAGATGCCCCTG+TGG + chr1_3:63555727-63555746 None:intergenic 60.0%
CTCGGTGGTGTGGCCAAAGT+GGG + chr1_3:63555778-63555797 None:intergenic 60.0%
TCTCGGTGGTGTGGCCAAAG+TGG + chr1_3:63555779-63555798 None:intergenic 60.0%
ACCCTACGGAGTAACCGTGG+CGG + chr1_3:63557175-63557194 None:intergenic 60.0%
CGAACCCTACGGAGTAACCG+TGG + chr1_3:63557178-63557197 None:intergenic 60.0%
GTAGGGTTCGCTCCTTGCAG+TGG - chr1_3:63557188-63557207 Msa0132490:intron 60.0%
GACGGTTCGAGGAGTGGCGA+CGG + chr1_3:63552902-63552921 None:intergenic 65.0%
GTCTGGCGAGAGATCGTCGC+CGG - chr1_3:63552928-63552947 Msa0132490:three_prime_UTR 65.0%
GTCGCCGGCGATGTGATCTC+CGG - chr1_3:63552943-63552962 Msa0132490:three_prime_UTR 65.0%
TGGTTGAAGGTGGGGGGAGG+GGG - chr1_3:63553220-63553239 Msa0132490:three_prime_UTR 65.0%
AGTAGCCAGCGGTGGCGCAA+CGG - chr1_3:63556151-63556170 Msa0132490:intron 65.0%
GGCCTTCGCTGCTCCACAAC+AGG + chr1_3:63557154-63557173 None:intergenic 65.0%
GCCGCCACGGTTACTCCGTA+GGG - chr1_3:63557171-63557190 Msa0132490:intron 65.0%
GTCTGCACAGGGGTGAGACC+AGG + chr1_3:63557457-63557476 None:intergenic 65.0%
TCGAGGAGTGGCGACGGCGT+CGG + chr1_3:63552896-63552915 None:intergenic 70.0%
GGGGGAGGGGGAAGAGAGGA+CGG - chr1_3:63553232-63553251 Msa0132490:three_prime_UTR 70.0%
TGGAGCAGCGAAGGCCGCCA+CGG - chr1_3:63557158-63557177 Msa0132490:intron 70.0%
GGCCGCCACGGTTACTCCGT+AGG - chr1_3:63557170-63557189 Msa0132490:intron 70.0%
!! AGTGGCGACGGCGTCGGCGA+GGG + chr1_3:63552890-63552909 None:intergenic 75.0%
GGTGGGGGGAGGGGGAAGAG+AGG - chr1_3:63553228-63553247 Msa0132490:three_prime_UTR 75.0%
!!! GAGTGGCGACGGCGTCGGCG+AGG + chr1_3:63552891-63552910 None:intergenic 80.0%
! GGCAGCCGTTGCGCCACCGC+TGG + chr1_3:63556159-63556178 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 63552629 63558019 63552629 ID=Msa0132490;Name=Msa0132490
chr1_3 mRNA 63552629 63558019 63552629 ID=Msa0132490-mRNA-1;Parent=Msa0132490;Name=Msa0132490-mRNA-1;_AED=0.06;_eAED=0.06;_QI=161|1|1|1|1|1|4|806|247
chr1_3 exon 63552629 63553515 63552629 ID=Msa0132490-mRNA-1:exon:21277;Parent=Msa0132490-mRNA-1
chr1_3 exon 63556039 63556068 63556039 ID=Msa0132490-mRNA-1:exon:21276;Parent=Msa0132490-mRNA-1
chr1_3 exon 63556990 63557061 63556990 ID=Msa0132490-mRNA-1:exon:21275;Parent=Msa0132490-mRNA-1
chr1_3 exon 63557298 63558019 63557298 ID=Msa0132490-mRNA-1:exon:21274;Parent=Msa0132490-mRNA-1
chr1_3 five_prime_UTR 63557859 63558019 63557859 ID=Msa0132490-mRNA-1:five_prime_utr;Parent=Msa0132490-mRNA-1
chr1_3 CDS 63557298 63557858 63557298 ID=Msa0132490-mRNA-1:cds;Parent=Msa0132490-mRNA-1
chr1_3 CDS 63556990 63557061 63556990 ID=Msa0132490-mRNA-1:cds;Parent=Msa0132490-mRNA-1
chr1_3 CDS 63556039 63556068 63556039 ID=Msa0132490-mRNA-1:cds;Parent=Msa0132490-mRNA-1
chr1_3 CDS 63553435 63553515 63553435 ID=Msa0132490-mRNA-1:cds;Parent=Msa0132490-mRNA-1
chr1_3 three_prime_UTR 63552629 63553434 63552629 ID=Msa0132490-mRNA-1:three_prime_utr;Parent=Msa0132490-mRNA-1
Gene Sequence

>Msa0132490

ATGGCTTCTTCCAAGCTCATGCCTTCTTCCGATCCACCTTCTTCTCCATCTCCTAAACCTCACTTCACCACCGCCAATTTCCTCGACGATCAAATCTCCCTCGCCGACGCCGTCGCCACTCCTCGAACCGTCGACGATGTCTGGCGAGAGATCGTCGCCGGCGATGTGATCTCCGGCGATAGGGAGTGTAAAGAAGAGATTTCCGATGAGATGATGACGCTGGAGGATTTTCTTGTGAAAGCTGGTGCGGTTGAGGATGAGGAGGAGGGTGAGGATGTGAAGATGACGATTCCGTTATCGGAGACGCTCAGTGGTAGTGGTATGTTTTCGTTGGATTCGAGTTTTCAAGGAATTGAAAACGTTGATGGGTCGGTGATAGGGTTTGGGAATGGGAATGGGAATGGCAATGGGAATGTGAATGGGGTGGAAATGGTTGAAGGTGGGGGGAGGGGGAAGAGAGGACGGCCTGTTATGGAGCAATTGGATAAAGCTGCTCAGCAGAGACAGAGGAGAATGATTAAGAATAGAGAATCTGCTGCTAGGTCTAGGGAACGCAAGCAGGCTTATCAAGTGGAATTGGAGTCCTTGGCGGTGAAGCTAGAGGAGGAAAATGACAAGTTGATGAAGGAAAAGGCTGAGAGGAAAAAGGAGAGGTTCAAGCAGCTTATGGAAAAAGTGATTCCTGTTGTGGAGCAGCGAAGGCCGCCACGGTTACTCCGTAGGGTTCGCTCCTTGCAGTGGTAG
Protein sequence

>Msa0132490

MASSKLMPSSDPPSSPSPKPHFTTANFLDDQISLADAVATPRTVDDVWREIVAGDVISGDRECKEEISDEMMTLEDFLVKAGAVEDEEEGEDVKMTIPLSETLSGSGMFSLDSSFQGIENVDGSVIGFGNGNGNGNGNVNGVEMVEGGGRGKRGRPVMEQLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLMKEKAERKKERFKQLMEKVIPVVEQRRPPRLLRRVRSLQW*