AlfalfaGEDB | Msa0038360

M. sativa cultivar zhongmu-4 / Msa0038360

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038360	sp\|Q39117\|TGT2_ARATH	49.797	492	181	10	50	496	36	506	3.59e-141	423

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038360	G7ICY9	96.655	568	16	1	1	568	1	565	0.0	1141

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TFs/TRs:

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Gene ID	Type	Classification
Msa0038360	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038360	Msa0132580	0.811743	6.010674e-51	-8.615850e-47
Msa0038360	Msa0181990	0.975055	2.950588e-139	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038360	MtrunA17_Chr1g0201911	96.655	568	16	1	1	568	1	565	0.0	1141
Msa0038360	MtrunA17_Chr1g0201941	45.923	601	204	15	3	500	2	584	5.82e-153	453
Msa0038360	MtrunA17_Chr6g0463941	54.167	288	111	3	52	318	52	339	9.61e-74	247
Msa0038360	MtrunA17_Chr6g0463941	58.642	162	61	2	363	521	449	607	2.34e-46	172
Msa0038360	MtrunA17_Chr6g0463941	43.617	94	52	1	51	143	460	553	8.24e-19	90.1
Msa0038360	MtrunA17_Chr6g0463941	41.379	87	50	1	375	461	55	140	5.48e-17	84.3
Msa0038360	MtrunA17_Chr1g0198171	30.118	425	222	13	36	432	95	472	1.05e-46	171
Msa0038360	MtrunA17_Chr1g0198171	38.129	139	81	3	329	466	71	205	4.08e-20	93.6
Msa0038360	MtrunA17_Chr2g0290511	37.860	243	123	4	241	463	116	350	1.27e-43	159
Msa0038360	MtrunA17_Chr2g0290511	39.091	110	59	2	54	162	261	363	3.90e-16	80.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038360	AT1G76890.2	49.797	492	181	10	50	496	36	506	3.65e-142	423
Msa0038360	AT1G76880.1	52.183	481	194	8	50	497	56	533	2.37e-137	412
Msa0038360	AT5G03680.1	34.038	426	235	12	55	462	119	516	5.67e-60	209
Msa0038360	AT5G28300.1	38.224	259	126	6	240	464	300	558	2.57e-40	155
Msa0038360	AT3G10000.1	32.239	335	161	10	12	323	56	347	1.03e-38	149
Msa0038360	AT3G10000.1	35.915	142	81	3	343	477	53	191	5.52e-21	96.7
Msa0038360	AT1G33240.3	68.132	91	29	0	375	465	435	525	1.05e-37	147
Msa0038360	AT1G33240.2	68.132	91	29	0	375	465	396	486	1.28e-37	147
Msa0038360	AT1G33240.2	43.678	87	48	1	55	140	396	482	1.76e-16	83.2
Msa0038360	AT1G33240.1	68.132	91	29	0	375	465	435	525	2.33e-37	147

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Find 159 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCATACCACAAACACC+TGG	0.637596	1_1:+67817754	Msa0038360:three_prime_UTR
AAAGTAGATCATTGGAGTTG+TGG	0.557615	1_1:+67817902	Msa0038360:three_prime_UTR
AACAAATAAACTTTCATCAA+TGG	0.444317	1_1:+67817437	Msa0038360:CDS
AACATGGATGAATATGAAGA+TGG	0.566553	1_1:+67817360	Msa0038360:CDS
AACCAAAGTATCAAGAAAAT+GGG	0.447699	1_1:+67816941	Msa0038360:CDS
AACCGGCACAATATTCTCAC+CGG	0.619642	1_1:-67814978	None:intergenic
AACGAATGTGGTAGGGTTTG+TGG	0.409596	1_1:-67816314	None:intergenic
AACTTCTTCTTCCACAGCTT+CGG	0.361209	1_1:+67816420	Msa0038360:CDS
AAGATAAGATCAGATATGGA+TGG	0.598844	1_1:+67815133	Msa0038360:CDS
AAGATAAGGAAGCTTCTCAT+TGG	0.487939	1_1:+67817477	Msa0038360:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTATACTCTCAACTCAAA+GGG	-	chr1_1:67814823-67814842	None:intergenic	30.0%
ATAGTATACTCTCAACTCAA+AGG	-	chr1_1:67814824-67814843	None:intergenic	30.0%
AATATCAATATTAACGGTGG+TGG	+	chr1_1:67815070-67815089	Msa0038360:CDS	30.0%
CTTGAAGATAAGATCAGATA+TGG	+	chr1_1:67815129-67815148	Msa0038360:CDS	30.0%
AAGATAAGATCAGATATGGA+TGG	+	chr1_1:67815133-67815152	Msa0038360:CDS	30.0%
TTTCGTGATTCAAGTCTTAA+GGG	+	chr1_1:67815160-67815179	Msa0038360:CDS	30.0%
AATAGGTTCCAAAAACTGAT+TGG	-	chr1_1:67815358-67815377	None:intergenic	30.0%
GTCAAAAAAAGCTCTTTGAT+TGG	+	chr1_1:67815395-67815414	Msa0038360:intron	30.0%
ATCTTATTCTCAAGTGTATG+AGG	+	chr1_1:67815451-67815470	Msa0038360:intron	30.0%
GTATATATATGGAGGGATTA+AGG	-	chr1_1:67816010-67816029	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	67814763	67818285	67814763	ID=Msa0038360;Name=Msa0038360
chr1_1	mRNA	67814763	67818285	67814763	ID=Msa0038360-mRNA-1;Parent=Msa0038360;Name=Msa0038360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=175\|1\|1\|1\|1\|1\|2\|812\|568
chr1_1	exon	67814763	67815206	67814763	ID=Msa0038360-mRNA-1:exon:22026;Parent=Msa0038360-mRNA-1
chr1_1	exon	67816036	67818285	67816036	ID=Msa0038360-mRNA-1:exon:22027;Parent=Msa0038360-mRNA-1
chr1_1	five_prime_UTR	67814763	67814937	67814763	ID=Msa0038360-mRNA-1:five_prime_utr;Parent=Msa0038360-mRNA-1
chr1_1	CDS	67814938	67815206	67814938	ID=Msa0038360-mRNA-1:cds;Parent=Msa0038360-mRNA-1
chr1_1	CDS	67816036	67817473	67816036	ID=Msa0038360-mRNA-1:cds;Parent=Msa0038360-mRNA-1
chr1_1	three_prime_UTR	67817474	67818285	67817474	ID=Msa0038360-mRNA-1:three_prime_utr;Parent=Msa0038360-mRNA-1

Gene Sequence

>Msa0038360

ATGCAGCTTGGTGATGCAACAGTAATGATGGAGACTTGCTCCGGTGAGAATATTGTGCCGGTTACGGCGCAAAACGGAGGCGGCGGTGAAGAGAAAGGAAGAGAGATTGGTGGTGAGGAAGATGATAAGATGAATATCAATATTAACGGTGGTGGAGGAAATAGGTGGCCCCGCCAAGAAACATTGGCTCTCTTGAAGATAAGATCAGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAGGTTTCAAGGAAACTAGCTGAACTTGGCTATCATAGAAGCTCAAAGAAGTGCAAGGAGAAATTTGAAAATGTATACAAGTATCACAAAAGAACCAAAGAAGGTAGGAGTGGAAAATCAGAAGGAAAAACCTATAGATTTTTTGATCAATTACAAGCACTTGAAAAACAACTCACATTCTCCTCTTACCATCCAAAACCACAACCAAATAATAACACACTCTCATCACCAACAACAAATCCCAATGAAACCACACAAACAATATCATATGTCACAACCACTGTTCCATCCACAAACCCTACCACATTCGTTTCTCCTTCACCACAACCTAACAACAACAATGTTCCAAATTCTTTGCCAAACATGAACAACCTATTCTCAACCACAACAACTTCAACTTCTTCTTCCACAGCTTCGGACGAAGACTTGGAAGAGAAGTATAGAAAGAAGAGAAAATGGAAGGACTATTTCAGGAGACTCACAAGACAAGTGCTTGCAAAACAAGAGGAAATGCAAAAGAAGTTTCTTGAGGCTATAGACAAACGTGAAAAAGAACACATTGCTCAACAAGATGCTTTGAGAATTCAAGAAATGGATAGAATCAATAAAGAACACGAACTTCTTATCCAAGAAAGATCATCAGCAGCTCAAAAAAATGCAGCTGTTATTGCATTTCTCCAAAAATTGTCTGGACAGCCACCACCACAACCACCGCCAGCACCAGAGCTGTCTCCGTGTCAGACAGCTCTGGCATCACAAGTTCAAACACAGCAACTAGTGATACCAAACAACAACATTGTTGAATTTCAAAATTTGAATAATGGTTACAAAAGTGGTAATGGTGGTGCTTCTCCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTTCATGCTCTAATAAGGATAAGAACAAGTCTTGAACCAAAGTATCAAGAAAATGGGCCAAAAGCGCCATTGTGGGAAGATATTTCAGCTGCAATGAAGAGACAAGGATACAATAGGAATGCGAAAAGGTGCAAAGAAAAATGGGAGAATATCAACAAATACTACAAGAAAATGAAGGAAAGTAACAAGCAAAGGCGTGATGATAGTAAGACATGTCCTTATTTTAATGAACTTGAAGCTATTTACAAAGAAAAGAACAAAACACAGAACCTTTTTGGTTCTAATTCGTTTCATAGCATGAAGTCAAATGAGACGATGGAGCCATTGATGGTGCAGCCAGAACAACAATGGAGACCTCCAACTACATTTGAAGAGGGTGCTGTGGTGAAGAAGAATGTTGATGAAGCAAAAGAAGAAGATGACAATGGTGATGTTGATGATGAAGAAGATGAAAACATGGATGAATATGAAGATGGAGATAGCATGGAAGAAGATGAAGGAGGTGTTAGTAGCCGTTATGAAGTTGTGACAACAAATAAACTTTCATCAATGGACACAGTTGTATGA

Protein sequence

>Msa0038360

MQLGDATVMMETCSGENIVPVTAQNGGGGEEKGREIGGEEDDKMNININGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALEKQLTFSSYHPKPQPNNNTLSSPTTNPNETTQTISYVTTTVPSTNPTTFVSPSPQPNNNNVPNSLPNMNNLFSTTTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKKFLEAIDKREKEHIAQQDALRIQEMDRINKEHELLIQERSSAAQKNAAVIAFLQKLSGQPPPQPPPAPELSPCQTALASQVQTQQLVIPNNNIVEFQNLNNGYKSGNGGASPSPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAAMKRQGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFNELEAIYKEKNKTQNLFGSNSFHSMKSNETMEPLMVQPEQQWRPPTTFEEGAVVKKNVDEAKEEDDNGDVDDEEDENMDEYEDGDSMEEDEGGVSSRYEVVTTNKLSSMDTVV*