AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038360 MtrunA17_Chr1g0201911 96.655 568 16 1 1 568 1 565 0.0 1141
Msa0038360 MtrunA17_Chr1g0201941 45.923 601 204 15 3 500 2 584 5.82e-153 453
Msa0038360 MtrunA17_Chr6g0463941 54.167 288 111 3 52 318 52 339 9.61e-74 247
Msa0038360 MtrunA17_Chr6g0463941 58.642 162 61 2 363 521 449 607 2.34e-46 172
Msa0038360 MtrunA17_Chr6g0463941 43.617 94 52 1 51 143 460 553 8.24e-19 90.1
Msa0038360 MtrunA17_Chr6g0463941 41.379 87 50 1 375 461 55 140 5.48e-17 84.3
Msa0038360 MtrunA17_Chr1g0198171 30.118 425 222 13 36 432 95 472 1.05e-46 171
Msa0038360 MtrunA17_Chr1g0198171 38.129 139 81 3 329 466 71 205 4.08e-20 93.6
Msa0038360 MtrunA17_Chr2g0290511 37.860 243 123 4 241 463 116 350 1.27e-43 159
Msa0038360 MtrunA17_Chr2g0290511 39.091 110 59 2 54 162 261 363 3.90e-16 80.5
Msa0038360 MtrunA17_Chr7g0265831 37.818 275 153 5 46 317 107 366 4.66e-43 160
Msa0038360 MtrunA17_Chr7g0265831 41.463 123 60 4 368 479 108 229 2.05e-19 91.3
Msa0038360 MtrunA17_Chr1g0179191 34.354 294 161 5 55 343 131 397 1.55e-41 157
Msa0038360 MtrunA17_Chr1g0179191 42.202 109 61 2 364 471 120 227 2.99e-20 94.4
Msa0038360 MtrunA17_Chr1g0190851 33.582 268 127 6 239 464 251 509 1.38e-33 134
Msa0038360 MtrunA17_Chr1g0190851 40.426 94 53 2 53 143 416 509 3.31e-14 75.5
Msa0038360 MtrunA17_Chr7g0273941 31.174 247 142 7 240 465 241 480 3.13e-29 121
Msa0038360 MtrunA17_Chr7g0273941 43.434 99 46 2 55 143 381 479 3.49e-16 81.3
Msa0038360 MtrunA17_Chr5g0409071 29.323 133 82 3 335 465 10 132 3.06e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038360 AT1G76890.2 49.797 492 181 10 50 496 36 506 3.65e-142 423
Msa0038360 AT1G76880.1 52.183 481 194 8 50 497 56 533 2.37e-137 412
Msa0038360 AT5G03680.1 34.038 426 235 12 55 462 119 516 5.67e-60 209
Msa0038360 AT5G28300.1 38.224 259 126 6 240 464 300 558 2.57e-40 155
Msa0038360 AT3G10000.1 32.239 335 161 10 12 323 56 347 1.03e-38 149
Msa0038360 AT3G10000.1 35.915 142 81 3 343 477 53 191 5.52e-21 96.7
Msa0038360 AT1G33240.3 68.132 91 29 0 375 465 435 525 1.05e-37 147
Msa0038360 AT1G33240.2 68.132 91 29 0 375 465 396 486 1.28e-37 147
Msa0038360 AT1G33240.2 43.678 87 48 1 55 140 396 482 1.76e-16 83.2
Msa0038360 AT1G33240.1 68.132 91 29 0 375 465 435 525 2.33e-37 147
Msa0038360 AT3G10000.2 31.138 334 156 10 12 323 56 337 5.59e-35 138
Msa0038360 AT3G10000.2 34.043 141 75 3 343 477 53 181 6.40e-18 87.0
Msa0038360 AT5G47660.1 31.718 227 140 4 238 463 177 389 1.78e-27 115
Msa0038360 AT5G47660.1 41.304 92 51 2 55 145 303 392 4.15e-13 71.6
Msa0038360 AT3G25990.1 32.000 100 67 1 376 474 55 154 5.77e-11 65.1

Find 159 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATAGTTGCTTTGCTTTGC+TGG 0.158924 1_1:-67817988 None:intergenic
AGTATAGAAAGAAGAGAAAA+TGG 0.189121 1_1:+67816461 Msa0038360:CDS
GAACCAAAGTATCAAGAAAA+TGG 0.192524 1_1:+67816940 Msa0038360:CDS
TTCATGTTTGGCAAAGAATT+TGG 0.196846 1_1:-67816370 None:intergenic
TTATTATTTGGTTGTGGTTT+TGG 0.205052 1_1:-67816217 None:intergenic
GAAAATGGAAGGACTATTTC+AGG 0.211748 1_1:+67816476 Msa0038360:CDS
ATTCTATGATCTCACGAAAT+TGG 0.233898 1_1:-67817646 None:intergenic
GGAGGTCTCCATTGTTGTTC+TGG 0.263104 1_1:-67817243 None:intergenic
GAATTTCAAAATTTGAATAA+TGG 0.276547 1_1:+67816826 Msa0038360:CDS
TCTTCCCACAATGGCGCTTT+TGG 0.281382 1_1:-67816964 None:intergenic
GAGCTGCTGATGATCTTTCT+TGG 0.298176 1_1:-67816651 None:intergenic
GTGAAGTTCATGCTCTAATA+AGG 0.301161 1_1:+67816902 Msa0038360:CDS
TGAAAATAGTCATATATTAA+AGG 0.303423 1_1:+67817736 Msa0038360:three_prime_UTR
GCTTCAAGTTCATTAAAATA+AGG 0.305695 1_1:-67817123 None:intergenic
GATGAGAGTGTGTTATTATT+TGG 0.316885 1_1:-67816229 None:intergenic
TCAAGAGAGCCAATGTTTCT+TGG 0.332675 1_1:-67815111 None:intergenic
TATGTATGTTCATGTTCATA+TGG 0.338357 1_1:+67817839 Msa0038360:three_prime_UTR
GAGAATAGGTTGTTCATGTT+TGG 0.353362 1_1:-67816382 None:intergenic
TTAACGGTGGTGGAGGAAAT+AGG 0.356278 1_1:+67815080 Msa0038360:CDS
AACTTCTTCTTCCACAGCTT+CGG 0.361209 1_1:+67816420 Msa0038360:CDS
GAAACGAATTAGAACCAAAA+AGG 0.368019 1_1:-67817176 None:intergenic
TATTGTTTGTGTGGTTTCAT+TGG 0.368826 1_1:-67816266 None:intergenic
CTTGAAGATAAGATCAGATA+TGG 0.382626 1_1:+67815129 Msa0038360:CDS
TTGAATAATGGTTACAAAAG+TGG 0.392274 1_1:+67816838 Msa0038360:CDS
GCTGGCGGTGGTTGTGGTGG+TGG 0.395680 1_1:-67816721 None:intergenic
GTTTCATTGGGATTTGTTGT+TGG 0.399933 1_1:-67816253 None:intergenic
AAGTCTTAAGGGTCCACTTT+GGG 0.401378 1_1:+67815171 Msa0038360:CDS
TCTGGTGCTGGCGGTGGTTG+TGG 0.405288 1_1:-67816727 None:intergenic
AACGAATGTGGTAGGGTTTG+TGG 0.409596 1_1:-67816314 None:intergenic
TGAGAATATTGTGCCGGTTA+CGG 0.409713 1_1:+67814982 Msa0038360:CDS
GAAGAGAAAGGAAGAGAGAT+TGG 0.412336 1_1:+67815025 Msa0038360:CDS
CACAGCTTCGGACGAAGACT+TGG 0.417011 1_1:+67816432 Msa0038360:CDS
TTCAAAATCTAAGTTTCTAC+AGG 0.417696 1_1:-67817560 None:intergenic
TGTTCTGGCTGCACCATCAA+TGG 0.420164 1_1:-67817228 None:intergenic
ATTGTTTGTGTGGTTTCATT+GGG 0.421975 1_1:-67816265 None:intergenic
TGCTTTGAGAATTCAAGAAA+TGG 0.425606 1_1:+67816597 Msa0038360:CDS
ATGTATGTTCATGTTCATAT+GGG 0.431852 1_1:+67817840 Msa0038360:three_prime_UTR
AATTCAACAATGTTGTTGTT+TGG 0.432386 1_1:-67816808 None:intergenic
TTTGGAACATTGTTGTTGTT+AGG 0.434536 1_1:-67816352 None:intergenic
CACTTTGGGAAGAGGTTTCA+AGG 0.436137 1_1:+67815185 Msa0038360:CDS
AAGTAGATCATTGGAGTTGT+GGG 0.443877 1_1:+67817903 Msa0038360:three_prime_UTR
AACAAATAAACTTTCATCAA+TGG 0.444317 1_1:+67817437 Msa0038360:CDS
GACAGCTCTGGTGCTGGCGG+TGG 0.444859 1_1:-67816733 None:intergenic
AAGTTGTTGTGGTTGAGAAT+AGG 0.446298 1_1:-67816396 None:intergenic
AACCAAAGTATCAAGAAAAT+GGG 0.447699 1_1:+67816941 Msa0038360:CDS
ACAATACATTCTGAAAATCA+TGG 0.449937 1_1:+67817870 Msa0038360:three_prime_UTR
TGAAGAGACAAGGATACAAT+AGG 0.451641 1_1:+67817001 Msa0038360:CDS
ATCAATATTAACGGTGGTGG+AGG 0.457605 1_1:+67815073 Msa0038360:CDS
GTGCTTCTCCTTCTCCATCA+AGG 0.462199 1_1:+67816869 Msa0038360:CDS
GAGAGCCAATGTTTCTTGGC+GGG 0.464598 1_1:-67815107 None:intergenic
AATGGTTACAAAAGTGGTAA+TGG 0.466799 1_1:+67816844 Msa0038360:CDS
CCAGCTTAAAAGTAGATCAT+TGG 0.469891 1_1:+67817894 Msa0038360:three_prime_UTR
CACGGAGACAGCTCTGGTGC+TGG 0.472655 1_1:-67816739 None:intergenic
TAAGGGTCCACTTTGGGAAG+AGG 0.472903 1_1:+67815177 Msa0038360:CDS
TTTCGTGATTCAAGTCTTAA+GGG 0.478392 1_1:+67815160 Msa0038360:CDS
AAGATGAATATCAATATTAA+CGG 0.478883 1_1:+67815064 Msa0038360:CDS
GCAAAGCAAAGCAACTATAG+TGG 0.483892 1_1:+67817991 Msa0038360:three_prime_UTR
ACATTGTTGTTGTTAGGTTG+TGG 0.486612 1_1:-67816346 None:intergenic
AAGATAAGGAAGCTTCTCAT+TGG 0.487939 1_1:+67817477 Msa0038360:three_prime_UTR
AGGAAGAGAGATTGGTGGTG+AGG 0.490326 1_1:+67815033 Msa0038360:CDS
TGAGACGATGGAGCCATTGA+TGG 0.495814 1_1:+67817215 Msa0038360:CDS
CAAGTCTTAAGGGTCCACTT+TGG 0.495967 1_1:+67815170 Msa0038360:CDS
ATCTTCTTCTATATGCAGCT+TGG 0.501249 1_1:+67814926 Msa0038360:exon
GGTGCTGGCGGTGGTTGTGG+TGG 0.502284 1_1:-67816724 None:intergenic
GCACCCTCTTCAAATGTAGT+TGG 0.502758 1_1:-67817264 None:intergenic
CATCATTAAAGTTGTGGAGG+TGG 0.503616 1_1:+67818171 Msa0038360:three_prime_UTR
GTCTGACACGGAGACAGCTC+TGG 0.505511 1_1:-67816745 None:intergenic
AATATCAATATTAACGGTGG+TGG 0.506001 1_1:+67815070 Msa0038360:CDS
CCCTCTTCAAATGTAGTTGG+AGG 0.507603 1_1:-67817261 None:intergenic
AAGCTGTATAATAGCTAGGT+AGG 0.507798 1_1:+67814896 Msa0038360:five_prime_UTR
TGTAGGAAACTAGCTGAACT+TGG 0.509833 1_1:+67816031 Msa0038360:intron
GTCTCCGTGTCAGACAGCTC+TGG 0.513072 1_1:+67816753 Msa0038360:CDS
ACTGCAAATGTAGAGGATCT+AGG 0.515315 1_1:-67817526 None:intergenic
TAGAAAGAAGAGAAAATGGA+AGG 0.520671 1_1:+67816465 Msa0038360:CDS
GAAGGAGAAACGAATGTGGT+AGG 0.521206 1_1:-67816322 None:intergenic
TGGGCCAAAAGCGCCATTGT+GGG 0.524060 1_1:+67816960 Msa0038360:CDS
AGGGTTTGTGGATGGAACAG+TGG 0.526949 1_1:-67816302 None:intergenic
CAAGTCTTCGTCCGAAGCTG+TGG 0.529430 1_1:-67816431 None:intergenic
AGTTATCATCATTAAAGTTG+TGG 0.529698 1_1:+67818165 Msa0038360:three_prime_UTR
GATAGCATGGAAGAAGATGA+AGG 0.531181 1_1:+67817384 Msa0038360:CDS
AGTGTGTTATTATTTGGTTG+TGG 0.532548 1_1:-67816223 None:intergenic
GACATATGATATTGTTTGTG+TGG 0.533682 1_1:-67816275 None:intergenic
GTGCCGGTTACGGCGCAAAA+CGG 0.534516 1_1:+67814992 Msa0038360:CDS
ATAGTATACTCTCAACTCAA+AGG 0.534719 1_1:-67814821 None:intergenic
ATTAAAGTTGTGGAGGTGGA+TGG 0.534789 1_1:+67818175 Msa0038360:three_prime_UTR
ACGGCGCAAAACGGAGGCGG+CGG 0.535961 1_1:+67815001 Msa0038360:CDS
TAGTATACTCTCAACTCAAA+GGG 0.536928 1_1:-67814820 None:intergenic
TTTGGCCACCTTGATGGAGA+AGG 0.538200 1_1:-67816877 None:intergenic
TATCACAAAAGAACCAAAGA+AGG 0.539271 1_1:+67816106 Msa0038360:CDS
CTCCGGTGAGAATATTGTGC+CGG 0.540412 1_1:+67814976 Msa0038360:CDS
CAAAATGAAATTGAAATACA+TGG 0.542258 1_1:-67818229 None:intergenic
ATATGAAGATGGAGATAGCA+TGG 0.544034 1_1:+67817371 Msa0038360:CDS
AGAGCCAATGTTTCTTGGCG+GGG 0.547860 1_1:-67815106 None:intergenic
TTGTTGTCACAACTTCATAA+CGG 0.553559 1_1:-67817419 None:intergenic
CTTGAAACCTCTTCCCAAAG+TGG 0.553632 1_1:-67815184 None:intergenic
GGTAGGAGTGGAAAATCAGA+AGG 0.553996 1_1:+67816127 Msa0038360:CDS
TGGTGATGCAACAGTAATGA+TGG 0.554542 1_1:+67814946 Msa0038360:CDS
ATGGGCCAAAAGCGCCATTG+TGG 0.554967 1_1:+67816959 Msa0038360:CDS
GAGAAAGGAAGAGAGATTGG+TGG 0.555860 1_1:+67815028 Msa0038360:CDS
AAAGTAGATCATTGGAGTTG+TGG 0.557615 1_1:+67817902 Msa0038360:three_prime_UTR
TTGTTGTTAGGTTGTGGTGA+AGG 0.559792 1_1:-67816340 None:intergenic
TTTAAATCTAAAAGTTCCTA+CGG 0.559809 1_1:+67817596 Msa0038360:three_prime_UTR
GGAGGCGGCGGTGAAGAGAA+AGG 0.561124 1_1:+67815013 Msa0038360:CDS
TAGCTATTATACAGCTTGAG+AGG 0.561313 1_1:-67814890 None:intergenic
ATGTTGTTAAACAGTTCACA+TGG 0.563077 1_1:+67817964 Msa0038360:three_prime_UTR
GTTACGGCGCAAAACGGAGG+CGG 0.565758 1_1:+67814998 Msa0038360:CDS
AACATGGATGAATATGAAGA+TGG 0.566553 1_1:+67817360 Msa0038360:CDS
ACTTTAATGATGATAACTAA+AGG 0.570189 1_1:-67818160 None:intergenic
CAGTTGTATGAGACAAGATA+AGG 0.570962 1_1:+67817463 Msa0038360:exon
AGAAGAAGTTGAAGTTGTTG+TGG 0.571331 1_1:-67816407 None:intergenic
AAGGAGAAACGAATGTGGTA+GGG 0.571339 1_1:-67816321 None:intergenic
CGCATTGAGATGCTTTCATG+AGG 0.572412 1_1:-67814786 None:intergenic
TCTCAAGCTGTATAATAGCT+AGG 0.574638 1_1:+67814892 Msa0038360:five_prime_UTR
CAATACATTCTGAAAATCAT+GGG 0.575043 1_1:+67817871 Msa0038360:three_prime_UTR
AGCTGTATAATAGCTAGGTA+GGG 0.575558 1_1:+67814897 Msa0038360:five_prime_UTR
AGAGAGCCAATGTTTCTTGG+CGG 0.579042 1_1:-67815108 None:intergenic
CAAATACTACAAGAAAATGA+AGG 0.579174 1_1:+67817062 Msa0038360:CDS
TGAAGGAAAGTAACAAGCAA+AGG 0.584180 1_1:+67817079 Msa0038360:CDS
TAACACATCTGAAGCAGTAG+AGG 0.584767 1_1:+67817621 Msa0038360:three_prime_UTR
GTGGCCCCGCCAAGAAACAT+TGG 0.588347 1_1:+67815102 Msa0038360:CDS
GGAGACAGCTCTGGTGCTGG+CGG 0.588687 1_1:-67816736 None:intergenic
GATACAATAGGAATGCGAAA+AGG 0.589387 1_1:+67817013 Msa0038360:CDS
TGATGAAGAAGATGAAAACA+TGG 0.596066 1_1:+67817344 Msa0038360:CDS
AGAACCAAAGAAGGTAGGAG+TGG 0.596126 1_1:+67816115 Msa0038360:CDS
ACCTCCAACTACATTTGAAG+AGG 0.596492 1_1:+67817260 Msa0038360:CDS
AAGATAAGATCAGATATGGA+TGG 0.598844 1_1:+67815133 Msa0038360:CDS
TATCATCATTAAAGTTGTGG+AGG 0.601827 1_1:+67818168 Msa0038360:three_prime_UTR
AATGCAAAAGAAGTTTCTTG+AGG 0.603327 1_1:+67816534 Msa0038360:CDS
ACAAGTGCTTGCAAAACAAG+AGG 0.605374 1_1:+67816510 Msa0038360:CDS
GTAATGATGGAGACTTGCTC+CGG 0.605776 1_1:+67814959 Msa0038360:CDS
TAGAAGCTCAAAGAAGTGCA+AGG 0.606310 1_1:+67816060 Msa0038360:CDS
ACAAAAGAACCAAAGAAGGT+AGG 0.608634 1_1:+67816110 Msa0038360:CDS
CTTCAGATGTGTTATACCGT+AGG 0.617936 1_1:-67817612 None:intergenic
AACCGGCACAATATTCTCAC+CGG 0.619642 1_1:-67814978 None:intergenic
AGCTATTATACAGCTTGAGA+GGG 0.625032 1_1:-67814889 None:intergenic
TGGTGCAGCCAGAACAACAA+TGG 0.627830 1_1:+67817235 Msa0038360:CDS
CCGGTTACGGCGCAAAACGG+AGG 0.631559 1_1:+67814995 Msa0038360:CDS
ACACAATACTGCAAATGTAG+AGG 0.632621 1_1:-67817533 None:intergenic
AAAGGCATACCACAAACACC+TGG 0.637596 1_1:+67817754 Msa0038360:three_prime_UTR
GCAAAAGAAGAAGATGACAA+TGG 0.642786 1_1:+67817312 Msa0038360:CDS
AGCATGGAAGAAGATGAAGG+AGG 0.648293 1_1:+67817387 Msa0038360:CDS
ATGAATATCAATATTAACGG+TGG 0.649447 1_1:+67815067 Msa0038360:CDS
CTATAGTGGAATGAGATGAG+AGG 0.660095 1_1:+67818005 Msa0038360:three_prime_UTR
CATGAAGTCAAATGAGACGA+TGG 0.663039 1_1:+67817203 Msa0038360:CDS
TACATTTGAAGAGGGTGCTG+TGG 0.663974 1_1:+67817269 Msa0038360:CDS
GCTGAAATATCTTCCCACAA+TGG 0.664092 1_1:-67816973 None:intergenic
CCTCCAACTACATTTGAAGA+GGG 0.665021 1_1:+67817261 Msa0038360:CDS
GGTTACAAAAGTGGTAATGG+TGG 0.667767 1_1:+67816847 Msa0038360:CDS
AATGTGGTAGGGTTTGTGGA+TGG 0.673197 1_1:-67816310 None:intergenic
CTTCTCCTTCTCCATCAAGG+TGG 0.673995 1_1:+67816872 Msa0038360:CDS
TCTCTGATCTCAGTTCATGA+CGG 0.674317 1_1:-67817937 None:intergenic
TCAGCTGCAATGAAGAGACA+AGG 0.690286 1_1:+67816991 Msa0038360:CDS
TGTTGTTAAACAGTTCACAT+GGG 0.695788 1_1:+67817965 Msa0038360:three_prime_UTR
AATGAAATTGAAATACATGG+TGG 0.699700 1_1:-67818226 None:intergenic
GCATTGAGATGCTTTCATGA+GGG 0.706051 1_1:-67814785 None:intergenic
GATGCCAGAGCTGTCTGACA+CGG 0.707672 1_1:-67816757 None:intergenic
ATAAGTTGAATATGACAGAG+AGG 0.711331 1_1:+67818077 Msa0038360:three_prime_UTR
TGGTGAAGGAGAAACGAATG+TGG 0.713404 1_1:-67816326 None:intergenic
ACGGTGGTGGAGGAAATAGG+TGG 0.747281 1_1:+67815083 Msa0038360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACCAAAAAAAAATTATATA+TGG - chr1_1:67815603-67815622 None:intergenic 10.0%
!! TTAAACTTAAGTAATTTAAT+TGG - chr1_1:67815654-67815673 None:intergenic 10.0%
!!! GTGTTTTTTTTTTTTTTTTT+TGG + chr1_1:67815794-67815813 Msa0038360:intron 10.0%
!! AAAAAAAATCATCTAATATT+GGG - chr1_1:67818104-67818123 None:intergenic 10.0%
!! AAAAAAAAATCATCTAATAT+TGG - chr1_1:67818105-67818124 None:intergenic 10.0%
!! AAGATGAATATCAATATTAA+CGG + chr1_1:67815064-67815083 Msa0038360:CDS 15.0%
!! GATATATAAATATTGAATTG+AGG - chr1_1:67815214-67815233 None:intergenic 15.0%
!!! CTCCATATATAATTTTTTTT+TGG + chr1_1:67815598-67815617 Msa0038360:intron 15.0%
!! ACAAAGTAATAAAAATTAGA+TGG - chr1_1:67815723-67815742 None:intergenic 15.0%
!! TAATTGATCAAAAAATCTAT+AGG - chr1_1:67816158-67816177 None:intergenic 15.0%
!! GAATTTCAAAATTTGAATAA+TGG + chr1_1:67816826-67816845 Msa0038360:CDS 15.0%
!!! TTTAAATTATTTTGTGCATT+TGG + chr1_1:67817685-67817704 Msa0038360:three_prime_UTR 15.0%
!!! TTAAATTATTTTGTGCATTT+GGG + chr1_1:67817686-67817705 Msa0038360:three_prime_UTR 15.0%
!! TGAAAATAGTCATATATTAA+AGG + chr1_1:67817736-67817755 Msa0038360:three_prime_UTR 15.0%
!! CTTATAAACAAGAAAATGAA+AGG - chr1_1:67815286-67815305 None:intergenic 20.0%
!!! TTTTTTTTTTCCTTCTGAAA+AGG + chr1_1:67815423-67815442 Msa0038360:intron 20.0%
!! AGTAATAAAAATTAGATGGA+AGG - chr1_1:67815719-67815738 None:intergenic 20.0%
!!! TTTGTGTGTTTCTTATTTAT+TGG + chr1_1:67815738-67815757 Msa0038360:intron 20.0%
!! AAAAGTAAAAATTTGTCATG+AGG - chr1_1:67815863-67815882 None:intergenic 20.0%
!!! TTTTACTTTTTTTACGTGAA+AGG + chr1_1:67815873-67815892 Msa0038360:intron 20.0%
!!! TTTTTCTTTTCCTTTTTCAA+TGG + chr1_1:67815904-67815923 Msa0038360:intron 20.0%
!! AACAAATAAACTTTCATCAA+TGG + chr1_1:67817437-67817456 Msa0038360:CDS 20.0%
!! TTTAAATCTAAAAGTTCCTA+CGG + chr1_1:67817596-67817615 Msa0038360:three_prime_UTR 20.0%
!!! ATAATGATGCTTTTTCAAAT+GGG - chr1_1:67817822-67817841 None:intergenic 20.0%
!! ACTTTAATGATGATAACTAA+AGG - chr1_1:67818163-67818182 None:intergenic 20.0%
!! CAAAATGAAATTGAAATACA+TGG - chr1_1:67818232-67818251 None:intergenic 20.0%
! GATCAGAAAAAATAAACAAG+AGG - chr1_1:67814858-67814877 None:intergenic 25.0%
! ATGAATATCAATATTAACGG+TGG + chr1_1:67815067-67815086 Msa0038360:CDS 25.0%
!! CAAAAACTGATTGGTTAATT+TGG - chr1_1:67815349-67815368 None:intergenic 25.0%
!! CAAATTAACCAATCAGTTTT+TGG + chr1_1:67815347-67815366 Msa0038360:intron 25.0%
!! TTCAGTTATCTTAGATTTTG+AGG + chr1_1:67815480-67815499 Msa0038360:intron 25.0%
!!! CATCTTCTTCAACTTTTTTT+AGG + chr1_1:67815683-67815702 Msa0038360:intron 25.0%
!! TATTTATTGGTCACTCTTTT+AGG + chr1_1:67815751-67815770 Msa0038360:intron 25.0%
! AAAAAAAAACACATGAAGCT+AGG - chr1_1:67815786-67815805 None:intergenic 25.0%
! GTTAGTATATCCATTGAAAA+AGG - chr1_1:67815917-67815936 None:intergenic 25.0%
! GTTTCCTACATGTATATATA+TGG - chr1_1:67816021-67816040 None:intergenic 25.0%
!! TTATTATTTGGTTGTGGTTT+TGG - chr1_1:67816220-67816239 None:intergenic 25.0%
! AGTATAGAAAGAAGAGAAAA+TGG + chr1_1:67816461-67816480 Msa0038360:CDS 25.0%
!! AATTCAACAATGTTGTTGTT+TGG - chr1_1:67816811-67816830 None:intergenic 25.0%
! TTGAATAATGGTTACAAAAG+TGG + chr1_1:67816838-67816857 Msa0038360:CDS 25.0%
!! AACCAAAGTATCAAGAAAAT+GGG + chr1_1:67816941-67816960 Msa0038360:CDS 25.0%
! CAAATACTACAAGAAAATGA+AGG + chr1_1:67817062-67817081 Msa0038360:CDS 25.0%
!! GCTTCAAGTTCATTAAAATA+AGG - chr1_1:67817126-67817145 None:intergenic 25.0%
! TTCAAAATCTAAGTTTCTAC+AGG - chr1_1:67817563-67817582 None:intergenic 25.0%
!! GAGATCATAGAATTTTCTTT+TGG + chr1_1:67817656-67817675 Msa0038360:three_prime_UTR 25.0%
!! AAATTGAATTTTTATGGTCC+AGG - chr1_1:67817775-67817794 None:intergenic 25.0%
!!! CATAATGATGCTTTTTCAAA+TGG - chr1_1:67817823-67817842 None:intergenic 25.0%
! TATGTATGTTCATGTTCATA+TGG + chr1_1:67817839-67817858 Msa0038360:three_prime_UTR 25.0%
! ATGTATGTTCATGTTCATAT+GGG + chr1_1:67817840-67817859 Msa0038360:three_prime_UTR 25.0%
!! ACAATACATTCTGAAAATCA+TGG + chr1_1:67817870-67817889 Msa0038360:three_prime_UTR 25.0%
!! CAATACATTCTGAAAATCAT+GGG + chr1_1:67817871-67817890 Msa0038360:three_prime_UTR 25.0%
! AGTTATCATCATTAAAGTTG+TGG + chr1_1:67818165-67818184 Msa0038360:three_prime_UTR 25.0%
! AATGAAATTGAAATACATGG+TGG - chr1_1:67818229-67818248 None:intergenic 25.0%
TAGTATACTCTCAACTCAAA+GGG - chr1_1:67814823-67814842 None:intergenic 30.0%
ATAGTATACTCTCAACTCAA+AGG - chr1_1:67814824-67814843 None:intergenic 30.0%
AATATCAATATTAACGGTGG+TGG + chr1_1:67815070-67815089 Msa0038360:CDS 30.0%
CTTGAAGATAAGATCAGATA+TGG + chr1_1:67815129-67815148 Msa0038360:CDS 30.0%
AAGATAAGATCAGATATGGA+TGG + chr1_1:67815133-67815152 Msa0038360:CDS 30.0%
! TTTTCGTGATTCAAGTCTTA+AGG + chr1_1:67815159-67815178 Msa0038360:CDS 30.0%
TTTCGTGATTCAAGTCTTAA+GGG + chr1_1:67815160-67815179 Msa0038360:CDS 30.0%
AATAGGTTCCAAAAACTGAT+TGG - chr1_1:67815358-67815377 None:intergenic 30.0%
GTCAAAAAAAGCTCTTTGAT+TGG + chr1_1:67815395-67815414 Msa0038360:intron 30.0%
! AAGATATATGCCTTTTCAGA+AGG - chr1_1:67815436-67815455 None:intergenic 30.0%
ATCTTATTCTCAAGTGTATG+AGG + chr1_1:67815451-67815470 Msa0038360:intron 30.0%
GTATATATATGGAGGGATTA+AGG - chr1_1:67816010-67816029 None:intergenic 30.0%
CCTACATGTATATATATGGA+GGG - chr1_1:67816017-67816036 None:intergenic 30.0%
TCCTACATGTATATATATGG+AGG - chr1_1:67816018-67816037 None:intergenic 30.0%
TATCACAAAAGAACCAAAGA+AGG + chr1_1:67816106-67816125 Msa0038360:CDS 30.0%
! AGTGTGTTATTATTTGGTTG+TGG - chr1_1:67816226-67816245 None:intergenic 30.0%
! GATGAGAGTGTGTTATTATT+TGG - chr1_1:67816232-67816251 None:intergenic 30.0%
ATTGTTTGTGTGGTTTCATT+GGG - chr1_1:67816268-67816287 None:intergenic 30.0%
TATTGTTTGTGTGGTTTCAT+TGG - chr1_1:67816269-67816288 None:intergenic 30.0%
GACATATGATATTGTTTGTG+TGG - chr1_1:67816278-67816297 None:intergenic 30.0%
! TTTGGAACATTGTTGTTGTT+AGG - chr1_1:67816355-67816374 None:intergenic 30.0%
TTCATGTTTGGCAAAGAATT+TGG - chr1_1:67816373-67816392 None:intergenic 30.0%
TAGAAAGAAGAGAAAATGGA+AGG + chr1_1:67816465-67816484 Msa0038360:CDS 30.0%
AATGCAAAAGAAGTTTCTTG+AGG + chr1_1:67816534-67816553 Msa0038360:CDS 30.0%
!! TGCTTTGAGAATTCAAGAAA+TGG + chr1_1:67816597-67816616 Msa0038360:CDS 30.0%
AATGGTTACAAAAGTGGTAA+TGG + chr1_1:67816844-67816863 Msa0038360:CDS 30.0%
! GAACCAAAGTATCAAGAAAA+TGG + chr1_1:67816940-67816959 Msa0038360:CDS 30.0%
! GAAAAGGTGCAAAGAAAAAT+GGG + chr1_1:67817029-67817048 Msa0038360:CDS 30.0%
! AACAAAACACAGAACCTTTT+TGG + chr1_1:67817162-67817181 Msa0038360:CDS 30.0%
GAAACGAATTAGAACCAAAA+AGG - chr1_1:67817179-67817198 None:intergenic 30.0%
TGATGAAGAAGATGAAAACA+TGG + chr1_1:67817344-67817363 Msa0038360:CDS 30.0%
AACATGGATGAATATGAAGA+TGG + chr1_1:67817360-67817379 Msa0038360:CDS 30.0%
TTGTTGTCACAACTTCATAA+CGG - chr1_1:67817422-67817441 None:intergenic 30.0%
ATTCTATGATCTCACGAAAT+TGG - chr1_1:67817649-67817668 None:intergenic 30.0%
ATGTTGTTAAACAGTTCACA+TGG + chr1_1:67817964-67817983 Msa0038360:three_prime_UTR 30.0%
TGTTGTTAAACAGTTCACAT+GGG + chr1_1:67817965-67817984 Msa0038360:three_prime_UTR 30.0%
! ATAAGTTGAATATGACAGAG+AGG + chr1_1:67818077-67818096 Msa0038360:three_prime_UTR 30.0%
TATCATCATTAAAGTTGTGG+AGG + chr1_1:67818168-67818187 Msa0038360:three_prime_UTR 30.0%
AGCTATTATACAGCTTGAGA+GGG - chr1_1:67814892-67814911 None:intergenic 35.0%
TAGCTATTATACAGCTTGAG+AGG - chr1_1:67814893-67814912 None:intergenic 35.0%
TCTCAAGCTGTATAATAGCT+AGG + chr1_1:67814892-67814911 Msa0038360:five_prime_UTR 35.0%
AAGCTGTATAATAGCTAGGT+AGG + chr1_1:67814896-67814915 Msa0038360:five_prime_UTR 35.0%
AGCTGTATAATAGCTAGGTA+GGG + chr1_1:67814897-67814916 Msa0038360:five_prime_UTR 35.0%
ATCTTCTTCTATATGCAGCT+TGG + chr1_1:67814926-67814945 Msa0038360:exon 35.0%
TTCTTCTATCTGAATCTTGC+TGG + chr1_1:67815542-67815561 Msa0038360:intron 35.0%
CCCTCCATATATATACATGT+AGG + chr1_1:67816014-67816033 Msa0038360:intron 35.0%
ACAAAAGAACCAAAGAAGGT+AGG + chr1_1:67816110-67816129 Msa0038360:CDS 35.0%
!!! TATTTGGTTGTGGTTTTGGA+TGG - chr1_1:67816216-67816235 None:intergenic 35.0%
!! GTTTCATTGGGATTTGTTGT+TGG - chr1_1:67816256-67816275 None:intergenic 35.0%
! ACATTGTTGTTGTTAGGTTG+TGG - chr1_1:67816349-67816368 None:intergenic 35.0%
GAGAATAGGTTGTTCATGTT+TGG - chr1_1:67816385-67816404 None:intergenic 35.0%
AAGTTGTTGTGGTTGAGAAT+AGG - chr1_1:67816399-67816418 None:intergenic 35.0%
AGAAGAAGTTGAAGTTGTTG+TGG - chr1_1:67816410-67816429 None:intergenic 35.0%
GAAAATGGAAGGACTATTTC+AGG + chr1_1:67816476-67816495 Msa0038360:CDS 35.0%
GCATTTCTCCAAAAATTGTC+TGG + chr1_1:67816694-67816713 Msa0038360:CDS 35.0%
!! AGAGCATGAACTTCACTTTT+TGG - chr1_1:67816898-67816917 None:intergenic 35.0%
GTGAAGTTCATGCTCTAATA+AGG + chr1_1:67816902-67816921 Msa0038360:CDS 35.0%
TGAAGAGACAAGGATACAAT+AGG + chr1_1:67817001-67817020 Msa0038360:CDS 35.0%
GATACAATAGGAATGCGAAA+AGG + chr1_1:67817013-67817032 Msa0038360:CDS 35.0%
! CGAAAAGGTGCAAAGAAAAA+TGG + chr1_1:67817028-67817047 Msa0038360:CDS 35.0%
TGAAGGAAAGTAACAAGCAA+AGG + chr1_1:67817079-67817098 Msa0038360:CDS 35.0%
GCAAAAGAAGAAGATGACAA+TGG + chr1_1:67817312-67817331 Msa0038360:CDS 35.0%
ATATGAAGATGGAGATAGCA+TGG + chr1_1:67817371-67817390 Msa0038360:CDS 35.0%
CAGTTGTATGAGACAAGATA+AGG + chr1_1:67817463-67817482 Msa0038360:exon 35.0%
AAGATAAGGAAGCTTCTCAT+TGG + chr1_1:67817477-67817496 Msa0038360:three_prime_UTR 35.0%
ACACAATACTGCAAATGTAG+AGG - chr1_1:67817536-67817555 None:intergenic 35.0%
!! CCAATGATCTACTTTTAAGC+TGG - chr1_1:67817897-67817916 None:intergenic 35.0%
CCAGCTTAAAAGTAGATCAT+TGG + chr1_1:67817894-67817913 Msa0038360:three_prime_UTR 35.0%
AAAGTAGATCATTGGAGTTG+TGG + chr1_1:67817902-67817921 Msa0038360:three_prime_UTR 35.0%
AAGTAGATCATTGGAGTTGT+GGG + chr1_1:67817903-67817922 Msa0038360:three_prime_UTR 35.0%
GCATTGAGATGCTTTCATGA+GGG - chr1_1:67814788-67814807 None:intergenic 40.0%
! TGGTGATGCAACAGTAATGA+TGG + chr1_1:67814946-67814965 Msa0038360:CDS 40.0%
!! TGAGAATATTGTGCCGGTTA+CGG + chr1_1:67814982-67815001 Msa0038360:CDS 40.0%
GAAGAGAAAGGAAGAGAGAT+TGG + chr1_1:67815025-67815044 Msa0038360:CDS 40.0%
! ATCAATATTAACGGTGGTGG+AGG + chr1_1:67815073-67815092 Msa0038360:CDS 40.0%
TCAAGAGAGCCAATGTTTCT+TGG - chr1_1:67815114-67815133 None:intergenic 40.0%
AAGTCTTAAGGGTCCACTTT+GGG + chr1_1:67815171-67815190 Msa0038360:CDS 40.0%
TAGTTCCACTGACAGGAAAT+AGG - chr1_1:67815375-67815394 None:intergenic 40.0%
!! TTTTGACTAGTTCCACTGAC+AGG - chr1_1:67815382-67815401 None:intergenic 40.0%
ATATGGAGGGATTAAGGAAG+TGG - chr1_1:67816004-67816023 None:intergenic 40.0%
TGTAGGAAACTAGCTGAACT+TGG + chr1_1:67816031-67816050 Msa0038360:intron 40.0%
! TAGAAGCTCAAAGAAGTGCA+AGG + chr1_1:67816060-67816079 Msa0038360:CDS 40.0%
! TTTTCCACTCCTACCTTCTT+TGG - chr1_1:67816122-67816141 None:intergenic 40.0%
!!! TTGTGGTTTTGGATGGTAAG+AGG - chr1_1:67816209-67816228 None:intergenic 40.0%
AAGGAGAAACGAATGTGGTA+GGG - chr1_1:67816324-67816343 None:intergenic 40.0%
! TTGTTGTTAGGTTGTGGTGA+AGG - chr1_1:67816343-67816362 None:intergenic 40.0%
AACTTCTTCTTCCACAGCTT+CGG + chr1_1:67816420-67816439 Msa0038360:CDS 40.0%
ACAAGTGCTTGCAAAACAAG+AGG + chr1_1:67816510-67816529 Msa0038360:CDS 40.0%
!! GGTTACAAAAGTGGTAATGG+TGG + chr1_1:67816847-67816866 Msa0038360:CDS 40.0%
! GGCCCATTTTCTTGATACTT+TGG - chr1_1:67816946-67816965 None:intergenic 40.0%
GCTGAAATATCTTCCCACAA+TGG - chr1_1:67816976-67816995 None:intergenic 40.0%
CATGAAGTCAAATGAGACGA+TGG + chr1_1:67817203-67817222 Msa0038360:CDS 40.0%
ACCTCCAACTACATTTGAAG+AGG + chr1_1:67817260-67817279 Msa0038360:CDS 40.0%
CCTCCAACTACATTTGAAGA+GGG + chr1_1:67817261-67817280 Msa0038360:CDS 40.0%
GATAGCATGGAAGAAGATGA+AGG + chr1_1:67817384-67817403 Msa0038360:CDS 40.0%
ACTGCAAATGTAGAGGATCT+AGG - chr1_1:67817529-67817548 None:intergenic 40.0%
CTTCAGATGTGTTATACCGT+AGG - chr1_1:67817615-67817634 None:intergenic 40.0%
! TAACACATCTGAAGCAGTAG+AGG + chr1_1:67817621-67817640 Msa0038360:three_prime_UTR 40.0%
! TTTTATGGTCCAGGTGTTTG+TGG - chr1_1:67817766-67817785 None:intergenic 40.0%
TCTCTGATCTCAGTTCATGA+CGG - chr1_1:67817940-67817959 None:intergenic 40.0%
! CTATAGTTGCTTTGCTTTGC+TGG - chr1_1:67817991-67818010 None:intergenic 40.0%
GCAAAGCAAAGCAACTATAG+TGG + chr1_1:67817991-67818010 Msa0038360:three_prime_UTR 40.0%
! CTATAGTGGAATGAGATGAG+AGG + chr1_1:67818005-67818024 Msa0038360:three_prime_UTR 40.0%
CATCATTAAAGTTGTGGAGG+TGG + chr1_1:67818171-67818190 Msa0038360:three_prime_UTR 40.0%
ATTAAAGTTGTGGAGGTGGA+TGG + chr1_1:67818175-67818194 Msa0038360:three_prime_UTR 40.0%
CGCATTGAGATGCTTTCATG+AGG - chr1_1:67814789-67814808 None:intergenic 45.0%
! GTAATGATGGAGACTTGCTC+CGG + chr1_1:67814959-67814978 Msa0038360:CDS 45.0%
AACCGGCACAATATTCTCAC+CGG - chr1_1:67814981-67815000 None:intergenic 45.0%
GAGAAAGGAAGAGAGATTGG+TGG + chr1_1:67815028-67815047 Msa0038360:CDS 45.0%
!! TTAACGGTGGTGGAGGAAAT+AGG + chr1_1:67815080-67815099 Msa0038360:CDS 45.0%
AGAGAGCCAATGTTTCTTGG+CGG - chr1_1:67815111-67815130 None:intergenic 45.0%
CAAGTCTTAAGGGTCCACTT+TGG + chr1_1:67815170-67815189 Msa0038360:CDS 45.0%
CTTGAAACCTCTTCCCAAAG+TGG - chr1_1:67815187-67815206 None:intergenic 45.0%
! CACTTTGGGAAGAGGTTTCA+AGG + chr1_1:67815185-67815204 Msa0038360:CDS 45.0%
TGGAACCTATTTCCTGTCAG+TGG + chr1_1:67815367-67815386 Msa0038360:intron 45.0%
AGAACCAAAGAAGGTAGGAG+TGG + chr1_1:67816115-67816134 Msa0038360:CDS 45.0%
GGTAGGAGTGGAAAATCAGA+AGG + chr1_1:67816127-67816146 Msa0038360:CDS 45.0%
AATGTGGTAGGGTTTGTGGA+TGG - chr1_1:67816313-67816332 None:intergenic 45.0%
AACGAATGTGGTAGGGTTTG+TGG - chr1_1:67816317-67816336 None:intergenic 45.0%
GAAGGAGAAACGAATGTGGT+AGG - chr1_1:67816325-67816344 None:intergenic 45.0%
TGGTGAAGGAGAAACGAATG+TGG - chr1_1:67816329-67816348 None:intergenic 45.0%
GAGCTGCTGATGATCTTTCT+TGG - chr1_1:67816654-67816673 None:intergenic 45.0%
! GTGGCTGTCCAGACAATTTT+TGG - chr1_1:67816705-67816724 None:intergenic 45.0%
!!! TCACTTTTTGGCCACCTTGA+TGG - chr1_1:67816886-67816905 None:intergenic 45.0%
TCAGCTGCAATGAAGAGACA+AGG + chr1_1:67816991-67817010 Msa0038360:CDS 45.0%
CCCTCTTCAAATGTAGTTGG+AGG - chr1_1:67817264-67817283 None:intergenic 45.0%
GCACCCTCTTCAAATGTAGT+TGG - chr1_1:67817267-67817286 None:intergenic 45.0%
!! TACATTTGAAGAGGGTGCTG+TGG + chr1_1:67817269-67817288 Msa0038360:CDS 45.0%
AGCATGGAAGAAGATGAAGG+AGG + chr1_1:67817387-67817406 Msa0038360:CDS 45.0%
! AAAGGCATACCACAAACACC+TGG + chr1_1:67817754-67817773 Msa0038360:three_prime_UTR 45.0%
!!! AAAAATAAATTGAATTTTTA+TGG - chr1_1:67817781-67817800 None:intergenic 5.0%
!!! ATTTTTTTCTTTTTAAATTA+TGG + chr1_1:67817795-67817814 Msa0038360:three_prime_UTR 5.0%
CTCCGGTGAGAATATTGTGC+CGG + chr1_1:67814976-67814995 Msa0038360:CDS 50.0%
!! AGGAAGAGAGATTGGTGGTG+AGG + chr1_1:67815033-67815052 Msa0038360:CDS 50.0%
AGAGCCAATGTTTCTTGGCG+GGG - chr1_1:67815109-67815128 None:intergenic 50.0%
GAGAGCCAATGTTTCTTGGC+GGG - chr1_1:67815110-67815129 None:intergenic 50.0%
! TAAGGGTCCACTTTGGGAAG+AGG + chr1_1:67815177-67815196 Msa0038360:CDS 50.0%
AAGTGGAGGAGACAGAAAGG+AGG - chr1_1:67815987-67816006 None:intergenic 50.0%
AGGAAGTGGAGGAGACAGAA+AGG - chr1_1:67815990-67816009 None:intergenic 50.0%
TGGAGGGATTAAGGAAGTGG+AGG - chr1_1:67816001-67816020 None:intergenic 50.0%
AGGGTTTGTGGATGGAACAG+TGG - chr1_1:67816305-67816324 None:intergenic 50.0%
GTGCTTCTCCTTCTCCATCA+AGG + chr1_1:67816869-67816888 Msa0038360:CDS 50.0%
CTTCTCCTTCTCCATCAAGG+TGG + chr1_1:67816872-67816891 Msa0038360:CDS 50.0%
TTTGGCCACCTTGATGGAGA+AGG - chr1_1:67816880-67816899 None:intergenic 50.0%
! TCTTCCCACAATGGCGCTTT+TGG - chr1_1:67816967-67816986 None:intergenic 50.0%
TGAGACGATGGAGCCATTGA+TGG + chr1_1:67817215-67817234 Msa0038360:CDS 50.0%
! TGTTCTGGCTGCACCATCAA+TGG - chr1_1:67817231-67817250 None:intergenic 50.0%
TGGTGCAGCCAGAACAACAA+TGG + chr1_1:67817235-67817254 Msa0038360:CDS 50.0%
! GGAGGTCTCCATTGTTGTTC+TGG - chr1_1:67817246-67817265 None:intergenic 50.0%
!! ACGGTGGTGGAGGAAATAGG+TGG + chr1_1:67815083-67815102 Msa0038360:CDS 55.0%
CAAGTCTTCGTCCGAAGCTG+TGG - chr1_1:67816434-67816453 None:intergenic 55.0%
CACAGCTTCGGACGAAGACT+TGG + chr1_1:67816432-67816451 Msa0038360:CDS 55.0%
GATGCCAGAGCTGTCTGACA+CGG - chr1_1:67816760-67816779 None:intergenic 55.0%
!! ATGGGCCAAAAGCGCCATTG+TGG + chr1_1:67816959-67816978 Msa0038360:CDS 55.0%
!! TGGGCCAAAAGCGCCATTGT+GGG + chr1_1:67816960-67816979 Msa0038360:CDS 55.0%
!! GTGCCGGTTACGGCGCAAAA+CGG + chr1_1:67814992-67815011 Msa0038360:CDS 60.0%
! CCTCCGTTTTGCGCCGTAAC+CGG - chr1_1:67814998-67815017 None:intergenic 60.0%
GTTACGGCGCAAAACGGAGG+CGG + chr1_1:67814998-67815017 Msa0038360:CDS 60.0%
GTGGCCCCGCCAAGAAACAT+TGG + chr1_1:67815102-67815121 Msa0038360:CDS 60.0%
GTCTGACACGGAGACAGCTC+TGG - chr1_1:67816748-67816767 None:intergenic 60.0%
GTCTCCGTGTCAGACAGCTC+TGG + chr1_1:67816753-67816772 Msa0038360:CDS 60.0%
CCGGTTACGGCGCAAAACGG+AGG + chr1_1:67814995-67815014 Msa0038360:CDS 65.0%
GGAGGCGGCGGTGAAGAGAA+AGG + chr1_1:67815013-67815032 Msa0038360:CDS 65.0%
!! TCTGGTGCTGGCGGTGGTTG+TGG - chr1_1:67816730-67816749 None:intergenic 65.0%
! GGAGACAGCTCTGGTGCTGG+CGG - chr1_1:67816739-67816758 None:intergenic 65.0%
! CACGGAGACAGCTCTGGTGC+TGG - chr1_1:67816742-67816761 None:intergenic 65.0%
ACGGCGCAAAACGGAGGCGG+CGG + chr1_1:67815001-67815020 Msa0038360:CDS 70.0%
GCTGGCGGTGGTTGTGGTGG+TGG - chr1_1:67816724-67816743 None:intergenic 70.0%
!! GGTGCTGGCGGTGGTTGTGG+TGG - chr1_1:67816727-67816746 None:intergenic 70.0%
!! GACAGCTCTGGTGCTGGCGG+TGG - chr1_1:67816736-67816755 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67814763 67818285 67814763 ID=Msa0038360;Name=Msa0038360
chr1_1 mRNA 67814763 67818285 67814763 ID=Msa0038360-mRNA-1;Parent=Msa0038360;Name=Msa0038360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=175|1|1|1|1|1|2|812|568
chr1_1 exon 67814763 67815206 67814763 ID=Msa0038360-mRNA-1:exon:22026;Parent=Msa0038360-mRNA-1
chr1_1 exon 67816036 67818285 67816036 ID=Msa0038360-mRNA-1:exon:22027;Parent=Msa0038360-mRNA-1
chr1_1 five_prime_UTR 67814763 67814937 67814763 ID=Msa0038360-mRNA-1:five_prime_utr;Parent=Msa0038360-mRNA-1
chr1_1 CDS 67814938 67815206 67814938 ID=Msa0038360-mRNA-1:cds;Parent=Msa0038360-mRNA-1
chr1_1 CDS 67816036 67817473 67816036 ID=Msa0038360-mRNA-1:cds;Parent=Msa0038360-mRNA-1
chr1_1 three_prime_UTR 67817474 67818285 67817474 ID=Msa0038360-mRNA-1:three_prime_utr;Parent=Msa0038360-mRNA-1
Gene Sequence

>Msa0038360

ATGCAGCTTGGTGATGCAACAGTAATGATGGAGACTTGCTCCGGTGAGAATATTGTGCCGGTTACGGCGCAAAACGGAGGCGGCGGTGAAGAGAAAGGAAGAGAGATTGGTGGTGAGGAAGATGATAAGATGAATATCAATATTAACGGTGGTGGAGGAAATAGGTGGCCCCGCCAAGAAACATTGGCTCTCTTGAAGATAAGATCAGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAGGTTTCAAGGAAACTAGCTGAACTTGGCTATCATAGAAGCTCAAAGAAGTGCAAGGAGAAATTTGAAAATGTATACAAGTATCACAAAAGAACCAAAGAAGGTAGGAGTGGAAAATCAGAAGGAAAAACCTATAGATTTTTTGATCAATTACAAGCACTTGAAAAACAACTCACATTCTCCTCTTACCATCCAAAACCACAACCAAATAATAACACACTCTCATCACCAACAACAAATCCCAATGAAACCACACAAACAATATCATATGTCACAACCACTGTTCCATCCACAAACCCTACCACATTCGTTTCTCCTTCACCACAACCTAACAACAACAATGTTCCAAATTCTTTGCCAAACATGAACAACCTATTCTCAACCACAACAACTTCAACTTCTTCTTCCACAGCTTCGGACGAAGACTTGGAAGAGAAGTATAGAAAGAAGAGAAAATGGAAGGACTATTTCAGGAGACTCACAAGACAAGTGCTTGCAAAACAAGAGGAAATGCAAAAGAAGTTTCTTGAGGCTATAGACAAACGTGAAAAAGAACACATTGCTCAACAAGATGCTTTGAGAATTCAAGAAATGGATAGAATCAATAAAGAACACGAACTTCTTATCCAAGAAAGATCATCAGCAGCTCAAAAAAATGCAGCTGTTATTGCATTTCTCCAAAAATTGTCTGGACAGCCACCACCACAACCACCGCCAGCACCAGAGCTGTCTCCGTGTCAGACAGCTCTGGCATCACAAGTTCAAACACAGCAACTAGTGATACCAAACAACAACATTGTTGAATTTCAAAATTTGAATAATGGTTACAAAAGTGGTAATGGTGGTGCTTCTCCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTTCATGCTCTAATAAGGATAAGAACAAGTCTTGAACCAAAGTATCAAGAAAATGGGCCAAAAGCGCCATTGTGGGAAGATATTTCAGCTGCAATGAAGAGACAAGGATACAATAGGAATGCGAAAAGGTGCAAAGAAAAATGGGAGAATATCAACAAATACTACAAGAAAATGAAGGAAAGTAACAAGCAAAGGCGTGATGATAGTAAGACATGTCCTTATTTTAATGAACTTGAAGCTATTTACAAAGAAAAGAACAAAACACAGAACCTTTTTGGTTCTAATTCGTTTCATAGCATGAAGTCAAATGAGACGATGGAGCCATTGATGGTGCAGCCAGAACAACAATGGAGACCTCCAACTACATTTGAAGAGGGTGCTGTGGTGAAGAAGAATGTTGATGAAGCAAAAGAAGAAGATGACAATGGTGATGTTGATGATGAAGAAGATGAAAACATGGATGAATATGAAGATGGAGATAGCATGGAAGAAGATGAAGGAGGTGTTAGTAGCCGTTATGAAGTTGTGACAACAAATAAACTTTCATCAATGGACACAGTTGTATGA
Protein sequence

>Msa0038360

MQLGDATVMMETCSGENIVPVTAQNGGGGEEKGREIGGEEDDKMNININGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALEKQLTFSSYHPKPQPNNNTLSSPTTNPNETTQTISYVTTTVPSTNPTTFVSPSPQPNNNNVPNSLPNMNNLFSTTTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKKFLEAIDKREKEHIAQQDALRIQEMDRINKEHELLIQERSSAAQKNAAVIAFLQKLSGQPPPQPPPAPELSPCQTALASQVQTQQLVIPNNNIVEFQNLNNGYKSGNGGASPSPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAAMKRQGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFNELEAIYKEKNKTQNLFGSNSFHSMKSNETMEPLMVQPEQQWRPPTTFEEGAVVKKNVDEAKEEDDNGDVDDEEDENMDEYEDGDSMEEDEGGVSSRYEVVTTNKLSSMDTVV*