Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038490 | XP_003592128.2 | 92.632 | 475 | 20 | 1 | 1 | 460 | 1 | 475 | 0.0 | 913 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038490 | sp|Q6ESZ9|SDC1_ORYSJ | 60.149 | 404 | 160 | 1 | 52 | 455 | 78 | 480 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038490 | Msa0038500 | 0.838061 | 3.596866e-57 | -8.615850e-47 |
| Msa0038490 | Msa0132660 | 0.823918 | 1.069416e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038490 | MtrunA17_Chr4g0039151 | 83.656 | 465 | 58 | 2 | 14 | 460 | 5 | 469 | 0.0 | 808 |
| Msa0038490 | MtrunA17_Chr1g0202091 | 83.848 | 421 | 66 | 1 | 35 | 455 | 38 | 456 | 0.0 | 746 |
| Msa0038490 | MtrunA17_Chr1g0202061 | 96.210 | 343 | 13 | 0 | 118 | 460 | 1 | 343 | 0.0 | 692 |
| Msa0038490 | MtrunA17_Chr1g0202041 | 66.509 | 424 | 142 | 0 | 33 | 456 | 88 | 511 | 0.0 | 620 |
| Msa0038490 | MtrunA17_Chr1g0202071 | 69.867 | 375 | 106 | 1 | 81 | 455 | 37 | 404 | 0.0 | 570 |
| Msa0038490 | MtrunA17_Chr2g0278631 | 59.427 | 419 | 164 | 1 | 43 | 455 | 67 | 485 | 0.0 | 540 |
| Msa0038490 | MtrunA17_Chr4g0039171 | 86.224 | 196 | 27 | 0 | 265 | 460 | 16 | 211 | 3.62e-121 | 352 |
| Msa0038490 | MtrunA17_Chr4g0039161 | 88.820 | 161 | 18 | 0 | 118 | 278 | 1 | 161 | 3.99e-102 | 302 |
| Msa0038490 | MtrunA17_Chr6g0479491 | 67.857 | 140 | 45 | 0 | 183 | 322 | 1 | 140 | 7.05e-68 | 213 |
| Msa0038490 | MtrunA17_Chr2g0278611 | 51.887 | 106 | 51 | 0 | 345 | 450 | 7 | 112 | 4.84e-33 | 121 |
| Msa0038490 | MtrunA17_Chr6g0479481 | 53.571 | 84 | 39 | 0 | 372 | 455 | 1 | 84 | 1.69e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038490 | AT1G43710.1 | 57.279 | 419 | 172 | 2 | 43 | 455 | 64 | 481 | 0.0 | 526 |
Find 114 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTACTCGTAGATGGAATT+TGG | 0.168123 | 1_1:-67971552 | Msa0038490:CDS |
| TATGCACTTCATGCATTTCT+AGG | 0.181542 | 1_1:+67971083 | None:intergenic |
| CACTGTGACGGAGCTCTATT+TGG | 0.184408 | 1_1:-67972447 | Msa0038490:CDS |
| GTTGCTACTTGCTAAAATTA+AGG | 0.214095 | 1_1:-67975671 | Msa0038490:intron |
| CTCTCTGCATCAGGAATTAA+AGG | 0.216470 | 1_1:+67973969 | None:intergenic |
| TAACTTACTTGTTTGATAAA+AGG | 0.223092 | 1_1:+67972414 | None:intergenic |
| CATGATGAAGAGAACATTAT+TGG | 0.259260 | 1_1:-67973945 | Msa0038490:CDS |
| CATATATATGTAAGTGTAAT+GGG | 0.268309 | 1_1:+67970952 | None:intergenic |
| GATAGAGAAGGATGAGTATT+GGG | 0.272708 | 1_1:-67973045 | Msa0038490:CDS |
| AGCAATTATTGCATCCAAAT+TGG | 0.282954 | 1_1:+67973878 | None:intergenic |
| AGCTAAAATTTATGTGATTT+CGG | 0.290864 | 1_1:-67971334 | Msa0038490:three_prime_UTR |
| TGTACTTTGTAATATGCTTC+TGG | 0.305814 | 1_1:+67974376 | None:intergenic |
| AACCACATTTATTGAGTGTT+TGG | 0.306469 | 1_1:+67972493 | None:intergenic |
| AATGCTGGAGATCCATTTCT+TGG | 0.310792 | 1_1:-67973137 | Msa0038490:CDS |
| ATCGACAGTGTAACAATTTC+AGG | 0.335482 | 1_1:-67971887 | Msa0038490:CDS |
| AGGTGAAACGGATGCCAATT+TGG | 0.346162 | 1_1:-67973892 | Msa0038490:CDS |
| TACATAATACAGGGATATAA+TGG | 0.354404 | 1_1:-67974021 | Msa0038490:intron |
| TTGAGGGTAGGACGTGAAAA+TGG | 0.356185 | 1_1:-67971305 | Msa0038490:three_prime_UTR |
| AAGGTTGGCTCTTTGTTATC+AGG | 0.364289 | 1_1:-67972723 | Msa0038490:CDS |
| GGCATGCTCCCATCTTCCTT+TGG | 0.375533 | 1_1:-67971736 | Msa0038490:CDS |
| TTGATTGGTTTGCTAAGTTA+TGG | 0.382543 | 1_1:-67973070 | Msa0038490:CDS |
| ATACTCAAAACCCAAATCTA+AGG | 0.383220 | 1_1:+67971163 | None:intergenic |
| GAGAAGCTGCTTCCAAGAAA+TGG | 0.384374 | 1_1:+67973125 | None:intergenic |
| TGTGGCTGCTATTACTATAC+TGG | 0.384934 | 1_1:+67975699 | None:intergenic |
| ATGATCACTTTACTCGTAGA+TGG | 0.389348 | 1_1:-67971559 | Msa0038490:CDS |
| TTCACGTCCTACCCTCAATA+AGG | 0.390470 | 1_1:+67971310 | None:intergenic |
| TTGTTCATCTTTAGACCAAA+TGG | 0.392383 | 1_1:+67971436 | None:intergenic |
| CAATTTCACTTGAACAATGC+TGG | 0.396864 | 1_1:-67973152 | Msa0038490:CDS |
| CTACTACGTGATGCTGGAAT+TGG | 0.417319 | 1_1:-67971632 | Msa0038490:CDS |
| TGATTGGTTTGCTAAGTTAT+GGG | 0.426791 | 1_1:-67973069 | Msa0038490:CDS |
| AGTAACATAGTGCTATAGTT+TGG | 0.428566 | 1_1:+67975761 | None:intergenic |
| ATTTCTAGATAAGTTGTGTA+TGG | 0.431821 | 1_1:+67971361 | None:intergenic |
| TCATCATGTCTCTCTGCATC+AGG | 0.431863 | 1_1:+67973960 | None:intergenic |
| ACATATATATGTAAGTGTAA+TGG | 0.433161 | 1_1:+67970951 | None:intergenic |
| TTGAAGTTAGCGTGCTTGAT+TGG | 0.434973 | 1_1:-67973085 | Msa0038490:CDS |
| TAAGTTACGCATGTTGTACT+TGG | 0.445801 | 1_1:+67973836 | None:intergenic |
| AGATAGAGAAGGATGAGTAT+TGG | 0.447110 | 1_1:-67973046 | Msa0038490:CDS |
| GTTATATAAAGGAGGGTTTG+AGG | 0.453944 | 1_1:-67974423 | Msa0038490:intron |
| TTACTATACTGGAAATAAGT+TGG | 0.459551 | 1_1:+67975710 | None:intergenic |
| CAGATTCCCTTCGGTTCCAC+CGG | 0.467193 | 1_1:+67973010 | None:intergenic |
| CAATCACGGGTAGCCGTTGT+GGG | 0.481164 | 1_1:-67971757 | Msa0038490:CDS |
| CTAAATCTACTACGTGATGC+TGG | 0.481255 | 1_1:-67971638 | Msa0038490:CDS |
| GGTTTCTTGAAGCTAATCCT+TGG | 0.482262 | 1_1:+67971911 | None:intergenic |
| TGATGGCTGGTTTATACTTG+TGG | 0.483773 | 1_1:+67972661 | None:intergenic |
| TAGTTGAAGTCTTGATTTGT+GGG | 0.484508 | 1_1:+67973197 | None:intergenic |
| TACTTGTGAATATGTGCAGC+AGG | 0.489897 | 1_1:+67974309 | None:intergenic |
| AATTCCATGCAGATTCCCTT+CGG | 0.496445 | 1_1:+67973001 | None:intergenic |
| TGTGATTTCGGACCTTATTG+AGG | 0.498045 | 1_1:-67971322 | Msa0038490:three_prime_UTR |
| CAGCTTCTCTCTCAATTCAA+TGG | 0.498459 | 1_1:-67973111 | Msa0038490:CDS |
| GAGAGCATACCAAAGGAAGA+TGG | 0.499819 | 1_1:+67971727 | None:intergenic |
| AAGTACAACATGCGTAACTT+AGG | 0.502308 | 1_1:-67973834 | Msa0038490:intron |
| ATAGTTGAAGTCTTGATTTG+TGG | 0.506123 | 1_1:+67973196 | None:intergenic |
| TCAAGGGATGCCACAATCAC+GGG | 0.512590 | 1_1:-67971770 | Msa0038490:CDS |
| ATGTTAAGATTGATGATGGC+TGG | 0.514328 | 1_1:+67972648 | None:intergenic |
| CACGGAGTGCATAGGTGAAA+CGG | 0.515279 | 1_1:-67973904 | Msa0038490:CDS |
| GTGATTTCGGACCTTATTGA+GGG | 0.519160 | 1_1:-67971321 | Msa0038490:three_prime_UTR |
| ACAATCACGGGTAGCCGTTG+TGG | 0.521944 | 1_1:-67971758 | Msa0038490:CDS |
| AAAAGAGTTAATGCATGCCT+TGG | 0.525200 | 1_1:+67971268 | None:intergenic |
| TTTAATTGGACTTGAAAATG+AGG | 0.531284 | 1_1:-67971693 | Msa0038490:CDS |
| TATTGGGGATACGTCACAAC+CGG | 0.534335 | 1_1:-67973029 | Msa0038490:CDS |
| ATAGAGAAGGATGAGTATTG+GGG | 0.535866 | 1_1:-67973044 | Msa0038490:CDS |
| TGAAATTGTTACACTGTCGA+TGG | 0.538544 | 1_1:+67971889 | None:intergenic |
| TACGAGTAAAGTGATCATCC+AGG | 0.540474 | 1_1:+67971564 | None:intergenic |
| ATCAAAACACCACAAGGTGA+TGG | 0.543988 | 1_1:+67971845 | None:intergenic |
| GATGTATATAGAATTCCATC+TGG | 0.545547 | 1_1:+67972804 | None:intergenic |
| ACCTATGTTAAGATTGATGA+TGG | 0.545675 | 1_1:+67972644 | None:intergenic |
| ATGTTGACATCATTGCTTCA+AGG | 0.546539 | 1_1:-67971787 | Msa0038490:CDS |
| TGTTGACATCATTGCTTCAA+GGG | 0.550317 | 1_1:-67971786 | Msa0038490:CDS |
| CTATGCACTCCGTGACATCA+AGG | 0.551584 | 1_1:+67973913 | None:intergenic |
| ACAACGGCTACCCGTGATTG+TGG | 0.552811 | 1_1:+67971760 | None:intergenic |
| TTCAAGTGAAATTGAAGCAA+TGG | 0.553908 | 1_1:+67973161 | None:intergenic |
| GAAATTGTTACACTGTCGAT+GGG | 0.554041 | 1_1:+67971890 | None:intergenic |
| TTCAAGGGATGCCACAATCA+CGG | 0.555562 | 1_1:-67971771 | Msa0038490:CDS |
| GTCACAACCGGTGGAACCGA+AGG | 0.563767 | 1_1:-67973017 | Msa0038490:CDS |
| AGAGCATACCAAAGGAAGAT+GGG | 0.570904 | 1_1:+67971728 | None:intergenic |
| AAGTTGGTGCGTACACATGC+GGG | 0.571575 | 1_1:+67975726 | None:intergenic |
| GATGGCTGGTTTATACTTGT+GGG | 0.574415 | 1_1:+67972662 | None:intergenic |
| TCAAAACACCACAAGGTGAT+GGG | 0.576418 | 1_1:+67971846 | None:intergenic |
| ATGAAGTGCATAAGAAACAT+TGG | 0.581769 | 1_1:-67971072 | Msa0038490:three_prime_UTR |
| GTTGTAGGGACAACTTTGAA+AGG | 0.582532 | 1_1:-67972543 | Msa0038490:intron |
| TATATATGTAAGTGTAATGG+GGG | 0.586462 | 1_1:+67970954 | None:intergenic |
| ATATATATGTAAGTGTAATG+GGG | 0.587450 | 1_1:+67970953 | None:intergenic |
| CGAATGCAGTGTGTGAAGGT+TGG | 0.588734 | 1_1:-67972738 | Msa0038490:CDS |
| GATATAATGGAGATTCAAGA+AGG | 0.589164 | 1_1:-67974008 | Msa0038490:CDS |
| AATATGCTTCTGGTGACTCG+TGG | 0.589369 | 1_1:+67974386 | None:intergenic |
| AGTTGTGTTTGAGAGACCCC+TGG | 0.590267 | 1_1:-67971582 | Msa0038490:CDS |
| TAAGTTGGTGCGTACACATG+CGG | 0.590479 | 1_1:+67975725 | None:intergenic |
| ACGTCGTTTGCAATGCATAG+AGG | 0.591087 | 1_1:+67971407 | None:intergenic |
| TTGGGATGCCCATCACCTTG+TGG | 0.591641 | 1_1:-67971854 | Msa0038490:CDS |
| TGGTGATTGAATAGGCTCCA+AGG | 0.593970 | 1_1:-67971928 | Msa0038490:intron |
| CTTGATGTCACGGAGTGCAT+AGG | 0.595997 | 1_1:-67973912 | Msa0038490:CDS |
| ACGAGTAAAGTGATCATCCA+GGG | 0.598226 | 1_1:+67971565 | None:intergenic |
| CTATGCATTGCAAACGACGT+TGG | 0.602159 | 1_1:-67971404 | Msa0038490:CDS |
| TAAGTTATGGGAGATAGAGA+AGG | 0.604352 | 1_1:-67973057 | Msa0038490:CDS |
| ATCCAAACACTCAATAAATG+TGG | 0.607015 | 1_1:-67972495 | Msa0038490:CDS |
| ACTCTAAGAATACAATGAGA+AGG | 0.607864 | 1_1:+67971228 | None:intergenic |
| CGAGTTATCAAAACACCACA+AGG | 0.608154 | 1_1:+67971839 | None:intergenic |
| GCCATCATCAATCTTAACAT+AGG | 0.610458 | 1_1:-67972645 | Msa0038490:intron |
| ACTTACAAACCTTGATGTCA+CGG | 0.613723 | 1_1:-67973922 | Msa0038490:CDS |
| CAATTCTACATTCACTGTGA+CGG | 0.614698 | 1_1:-67972459 | Msa0038490:CDS |
| TTTGAACAATGTGATGCTGC+GGG | 0.616587 | 1_1:+67971036 | None:intergenic |
| AGCAAGTAGCAACATAAGTG+TGG | 0.617472 | 1_1:+67975681 | None:intergenic |
| AATTGATTGTGTTGAACTAG+AGG | 0.621905 | 1_1:-67972697 | Msa0038490:CDS |
| TGGGGATACGTCACAACCGG+TGG | 0.626996 | 1_1:-67973026 | Msa0038490:CDS |
| TGGTTTGTGACTATAGTCCA+AGG | 0.627076 | 1_1:-67971285 | Msa0038490:three_prime_UTR |
| GGAACCGAAGGGAATCTGCA+TGG | 0.630934 | 1_1:-67973005 | Msa0038490:CDS |
| AGAAGAGAACAATTACCAGA+TGG | 0.633523 | 1_1:-67972819 | Msa0038490:CDS |
| TCACAACCGGTGGAACCGAA+GGG | 0.644090 | 1_1:-67973016 | Msa0038490:CDS |
| GTAGGGACAACTTTGAAAGG+AGG | 0.644535 | 1_1:-67972540 | Msa0038490:intron |
| TTTCGGACCTTATTGAGGGT+AGG | 0.646831 | 1_1:-67971317 | Msa0038490:three_prime_UTR |
| AGATGGGAGCATGCCCACAA+CGG | 0.656257 | 1_1:+67971744 | None:intergenic |
| GTATCGAATGCAGTGTGTGA+AGG | 0.659816 | 1_1:-67972742 | Msa0038490:CDS |
| CGAGTAAAGTGATCATCCAG+GGG | 0.693362 | 1_1:+67971566 | None:intergenic |
| GATTCAAGAAGGAAACAACA+TGG | 0.724422 | 1_1:-67973997 | Msa0038490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTGTTATATTTTTAAAA+TGG | - | chr1_1:67971554-67971573 | Msa0038490:CDS | 10.0% |
| !!! | TTTTTTTTTTGTTTTATCTA+GGG | + | chr1_1:67971879-67971898 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTGTTTTATCT+AGG | + | chr1_1:67971880-67971899 | None:intergenic | 10.0% |
| !! | TTCAAATAAATTAATTTAGT+CGG | + | chr1_1:67973225-67973244 | None:intergenic | 10.0% |
| !! | ATACAAATTAATTAGTAAAT+AGG | + | chr1_1:67974105-67974124 | None:intergenic | 10.0% |
| !!! | TTTACTAATTAATTTGTATT+TGG | - | chr1_1:67974106-67974125 | Msa0038490:intron | 10.0% |
| !! | ACAAAAAAGTAATAAAAATA+TGG | + | chr1_1:67974422-67974441 | None:intergenic | 10.0% |
| !!! | AATTATAGTTTTATATGTTA+GGG | + | chr1_1:67974678-67974697 | None:intergenic | 10.0% |
| !!! | TAATTATAGTTTTATATGTT+AGG | + | chr1_1:67974679-67974698 | None:intergenic | 10.0% |
| !! | TATAAAACTATAATTATATG+TGG | - | chr1_1:67974683-67974702 | Msa0038490:intron | 10.0% |
| !! | TTCAAAAATAATATCAATAA+AGG | - | chr1_1:67975700-67975719 | Msa0038490:five_prime_UTR | 10.0% |
| !! | ACACAAAAAAAAACTAAAAA+TGG | + | chr1_1:67971541-67971560 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTTTTATCTAG+GGG | + | chr1_1:67971878-67971897 | None:intergenic | 15.0% |
| !!! | ACTTTTTGTTTTTGTTTTTT+AGG | + | chr1_1:67971906-67971925 | None:intergenic | 15.0% |
| !!! | TGTGTGTTATATTTTTAAAA+TGG | + | chr1_1:67971961-67971980 | None:intergenic | 15.0% |
| !! | CACAAAAAAAAAACTAAAAA+TGG | - | chr1_1:67971977-67971996 | Msa0038490:intron | 15.0% |
| !!! | ATATCATTTTTTTTGTTGAT+AGG | - | chr1_1:67972196-67972215 | Msa0038490:intron | 15.0% |
| !!! | TATCATTTTTTTTGTTGATA+GGG | - | chr1_1:67972197-67972216 | Msa0038490:intron | 15.0% |
| !!! | ATTTATTTGTTATATAAAGG+AGG | - | chr1_1:67972288-67972307 | Msa0038490:intron | 15.0% |
| !!! | TTTATTTGTTATATAAAGGA+GGG | - | chr1_1:67972289-67972308 | Msa0038490:intron | 15.0% |
| !!! | TATCTTTAGATACTATTTTA+TGG | - | chr1_1:67972934-67972953 | Msa0038490:intron | 15.0% |
| !!! | TAATTTTACTAAGTTATATG+CGG | + | chr1_1:67973248-67973267 | None:intergenic | 15.0% |
| !! | AATGTACTAAAAAATAAAGA+AGG | - | chr1_1:67973368-67973387 | Msa0038490:intron | 15.0% |
| !!! | ATTTTCTTTAATCAGTTAAA+AGG | + | chr1_1:67973425-67973444 | None:intergenic | 15.0% |
| !! | ATAGGGATAAAAAATAAAAT+TGG | - | chr1_1:67973792-67973811 | Msa0038490:intron | 15.0% |
| !!! | TTTTAGATGATATCTAAATT+AGG | + | chr1_1:67974763-67974782 | None:intergenic | 15.0% |
| !! | ACAGTAATTAACTACTATTA+AGG | + | chr1_1:67971196-67971215 | None:intergenic | 20.0% |
| !! | ACAGTAATTAACTACTATTA+AGG | + | chr1_1:67971196-67971215 | None:intergenic | 20.0% |
| !!! | TATCATTTTTTTTGGTGATA+GGG | + | chr1_1:67971321-67971340 | None:intergenic | 20.0% |
| !!! | ATATCATTTTTTTTGGTGAT+AGG | + | chr1_1:67971322-67971341 | None:intergenic | 20.0% |
| !!! | AAGCCATTGATTTTTTTTTT+CGG | + | chr1_1:67971933-67971952 | None:intergenic | 20.0% |
| !!! | ATCATTTTTTTTGTTGATAG+GGG | - | chr1_1:67972198-67972217 | Msa0038490:intron | 20.0% |
| !! | ATAATACACTCGAAAATATA+TGG | + | chr1_1:67972258-67972277 | None:intergenic | 20.0% |
| !!! | TATATACTATTCAGTTTTTC+AGG | - | chr1_1:67972647-67972666 | Msa0038490:CDS | 20.0% |
| !! | AAAAATAATCAGCATATACA+TGG | + | chr1_1:67972673-67972692 | None:intergenic | 20.0% |
| !! | TAACTTACTTGTTTGATAAA+AGG | + | chr1_1:67974308-67974327 | None:intergenic | 20.0% |
| !!! | TTTTTCATCCTCATAAAAAA+TGG | + | chr1_1:67974613-67974632 | None:intergenic | 20.0% |
| !!! | TATCATCTAAAATTTTGCTT+TGG | - | chr1_1:67974771-67974790 | Msa0038490:intron | 20.0% |
| !! | AGCTAAAATTTATGTGATTT+CGG | - | chr1_1:67975385-67975404 | Msa0038490:intron | 20.0% |
| !!! | TTTTTTTTTCTCCTTAGATT+TGG | - | chr1_1:67975545-67975564 | Msa0038490:intron | 20.0% |
| !!! | TTTTTTTTCTCCTTAGATTT+GGG | - | chr1_1:67975546-67975565 | Msa0038490:intron | 20.0% |
| !! | ATATATATGTAAGTGTAATG+GGG | + | chr1_1:67975769-67975788 | None:intergenic | 20.0% |
| !! | CATATATATGTAAGTGTAAT+GGG | + | chr1_1:67975770-67975789 | None:intergenic | 20.0% |
| !! | ACATATATATGTAAGTGTAA+TGG | + | chr1_1:67975771-67975790 | None:intergenic | 20.0% |
| ! | TTACTATACTGGAAATAAGT+TGG | + | chr1_1:67971012-67971031 | None:intergenic | 25.0% |
| !!! | TTTGTTTTACTCTCTTTGAA+TGG | - | chr1_1:67971096-67971115 | Msa0038490:three_prime_UTR | 25.0% |
| !!! | ATCATTTTTTTTGGTGATAG+GGG | + | chr1_1:67971320-67971339 | None:intergenic | 25.0% |
| !! | TGATCAATTGTTTTCAACTA+GGG | + | chr1_1:67972167-67972186 | None:intergenic | 25.0% |
| !! | TTGATCAATTGTTTTCAACT+AGG | + | chr1_1:67972166-67972185 | None:intergenic | 25.0% |
| ! | TTATAGGGATTGTTGAAAAT+TGG | + | chr1_1:67971411-67971430 | None:intergenic | 25.0% |
| ! | AACACACCTAAAAAAATCAA+TGG | + | chr1_1:67971588-67971607 | None:intergenic | 25.0% |
| !!! | TTTTAGGTGTGTTTGTTTTA+AGG | - | chr1_1:67971595-67971614 | Msa0038490:CDS | 25.0% |
| ! | AGGATTAAATTTACAATTGC+AGG | - | chr1_1:67971615-67971634 | Msa0038490:CDS | 25.0% |
| ! | GTACCGAAAAAAAAAATCAA+TGG | - | chr1_1:67971927-67971946 | Msa0038490:intron | 25.0% |
| ! | GAAAAAAAAAATCAATGGCT+TGG | - | chr1_1:67971932-67971951 | Msa0038490:intron | 25.0% |
| !! | TTCTTGTTCTTCTTTTCAAA+TGG | + | chr1_1:67972011-67972030 | None:intergenic | 25.0% |
| !! | TGATCAATTGTTTTCAACTA+AGG | - | chr1_1:67972167-67972186 | Msa0038490:intron | 25.0% |
| !! | ATAATTCGTACATTTTTCTG+TGG | - | chr1_1:67972232-67972251 | Msa0038490:intron | 25.0% |
| !!! | GCATCTAGATGTATTTTAAA+AGG | + | chr1_1:67972509-67972528 | None:intergenic | 25.0% |
| ! | ATTATATCCCTGTATTATGT+AGG | + | chr1_1:67972699-67972718 | None:intergenic | 25.0% |
| ! | TACATAATACAGGGATATAA+TGG | - | chr1_1:67972698-67972717 | Msa0038490:CDS | 25.0% |
| !!! | ACAATTTTTCAAGATACAGT+TGG | - | chr1_1:67972988-67973007 | Msa0038490:intron | 25.0% |
| !! | GGTATTTTGTGGTATAAAAT+AGG | + | chr1_1:67973158-67973177 | None:intergenic | 25.0% |
| !!! | ATTGTTTACAAGGTATTTTG+TGG | + | chr1_1:67973169-67973188 | None:intergenic | 25.0% |
| ! | GATTGCATTAATTGTTTACA+AGG | + | chr1_1:67973179-67973198 | None:intergenic | 25.0% |
| ! | TTACTACAAATTAGTCGTAA+AGG | + | chr1_1:67973296-67973315 | None:intergenic | 25.0% |
| ! | CTATTATGGATTTGATACAA+CGG | + | chr1_1:67973398-67973417 | None:intergenic | 25.0% |
| ! | TTCTTTAATCAGTTAAAAGG+TGG | + | chr1_1:67973422-67973441 | None:intergenic | 25.0% |
| !!! | TTAGTACATTTTAAAAGCGA+CGG | + | chr1_1:67973475-67973494 | None:intergenic | 25.0% |
| ! | CATGTACAAAACAAGTAAAA+TGG | - | chr1_1:67974145-67974164 | Msa0038490:intron | 25.0% |
| !!! | AAAATGGTTACTTTTGTTGT+AGG | - | chr1_1:67974161-67974180 | Msa0038490:intron | 25.0% |
| !!! | AAATGGTTACTTTTGTTGTA+GGG | - | chr1_1:67974162-67974181 | Msa0038490:intron | 25.0% |
| !!! | TTTTGACTTTTAACCCATTT+GGG | - | chr1_1:67974448-67974467 | Msa0038490:intron | 25.0% |
| !! | TTATAAATATGAAGCCTTGT+TGG | + | chr1_1:67974719-67974738 | None:intergenic | 25.0% |
| ! | TTTAATTGGACTTGAAAATG+AGG | - | chr1_1:67975026-67975045 | Msa0038490:intron | 25.0% |
| !!! | ATCGTTTTTCAGTAAATTCA+CGG | + | chr1_1:67975263-67975282 | None:intergenic | 25.0% |
| !! | ATTTCTAGATAAGTTGTGTA+TGG | + | chr1_1:67975361-67975380 | None:intergenic | 25.0% |
| ! | AAAAAACACATAGTAACATG+TGG | + | chr1_1:67975530-67975549 | None:intergenic | 25.0% |
| ! | TATATATGTAAGTGTAATGG+GGG | + | chr1_1:67975768-67975787 | None:intergenic | 25.0% |
| AGTAACATAGTGCTATAGTT+TGG | + | chr1_1:67970961-67970980 | None:intergenic | 30.0% | |
| ! | GTTGCTACTTGCTAAAATTA+AGG | - | chr1_1:67971048-67971067 | Msa0038490:three_prime_UTR | 30.0% |
| ! | CTACTTGCTAAAATTAAGGT+GGG | - | chr1_1:67971052-67971071 | Msa0038490:three_prime_UTR | 30.0% |
| TGCTTACTTTCAAATTGAGT+AGG | + | chr1_1:67971128-67971147 | None:intergenic | 30.0% | |
| TAAGGTACACAATCTCAATT+CGG | + | chr1_1:67971178-67971197 | None:intergenic | 30.0% | |
| TAAGGTACACAATCTCAATT+CGG | + | chr1_1:67971178-67971197 | None:intergenic | 30.0% | |
| !!! | GGCAGACATATCATTTTTTT+TGG | + | chr1_1:67971329-67971348 | None:intergenic | 30.0% |
| ! | GATCAATTGTTTTCAACTAG+GGG | + | chr1_1:67971350-67971369 | None:intergenic | 30.0% |
| ! | AATGCTCCTATTCTTGATTT+TGG | - | chr1_1:67971372-67971391 | Msa0038490:CDS | 30.0% |
| AAAAAGCCTGCAAACTTATA+GGG | + | chr1_1:67971426-67971445 | None:intergenic | 30.0% | |
| AAAAAAGCCTGCAAACTTAT+AGG | + | chr1_1:67971427-67971446 | None:intergenic | 30.0% | |
| TGTATGTTCTCCATTTCAAA+TGG | - | chr1_1:67971458-67971477 | Msa0038490:CDS | 30.0% | |
| ! | TTCCTGTTCTTCTTTTCAAA+TGG | - | chr1_1:67971507-67971526 | Msa0038490:CDS | 30.0% |
| !!! | ACCAAGCCATTGATTTTTTT+AGG | - | chr1_1:67971579-67971598 | Msa0038490:CDS | 30.0% |
| ACCTAAAAAAATCAATGGCT+TGG | + | chr1_1:67971583-67971602 | None:intergenic | 30.0% | |
| ! | ATTGCAGGAATAACATTTTC+CGG | - | chr1_1:67971630-67971649 | Msa0038490:CDS | 30.0% |
| ! | GATTTCTAGGAATAATGTTC+CGG | + | chr1_1:67971652-67971671 | None:intergenic | 30.0% |
| ACTAACATAGTCTACATTCA+GGG | - | chr1_1:67971776-67971795 | Msa0038490:CDS | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | - | chr1_1:67971804-67971823 | Msa0038490:CDS | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | - | chr1_1:67971805-67971824 | Msa0038490:CDS | 30.0% | |
| TGTATGTTCTCCATTTCAAA+TGG | + | chr1_1:67971458-67971477 | None:intergenic | 30.0% | |
| TTGTAGGGATTGTTGAAAAT+TGG | - | chr1_1:67972107-67972126 | Msa0038490:intron | 30.0% | |
| TGTACTTTGTAATATGCTTC+TGG | + | chr1_1:67972346-67972365 | None:intergenic | 30.0% | |
| TTGCTAATTAACGAAGAGAA+GGG | + | chr1_1:67972486-67972505 | None:intergenic | 30.0% | |
| GCTAAGAAATGTGTTTATTG+TGG | - | chr1_1:67972585-67972604 | Msa0038490:intron | 30.0% | |
| ! | TTTTTCTGCCTACATAATAC+AGG | - | chr1_1:67972688-67972707 | Msa0038490:CDS | 30.0% |
| ! | TTTTCTGCCTACATAATACA+GGG | - | chr1_1:67972689-67972708 | Msa0038490:CDS | 30.0% |
| ! | GATATAATGGAGATTCAAGA+AGG | - | chr1_1:67972711-67972730 | Msa0038490:CDS | 30.0% |
| CATGATGAAGAGAACATTAT+TGG | - | chr1_1:67972774-67972793 | Msa0038490:CDS | 30.0% | |
| AGCAATTATTGCATCCAAAT+TGG | + | chr1_1:67972844-67972863 | None:intergenic | 30.0% | |
| AGTTAAAAGGTGGTCTATTA+TGG | + | chr1_1:67973412-67973431 | None:intergenic | 30.0% | |
| CTTTGATCTAATGATACTGA+AGG | - | chr1_1:67973495-67973514 | Msa0038490:intron | 30.0% | |
| !! | TAGTTGAAGTCTTGATTTGT+GGG | + | chr1_1:67973525-67973544 | None:intergenic | 30.0% |
| ! | ATAGTTGAAGTCTTGATTTG+TGG | + | chr1_1:67973526-67973545 | None:intergenic | 30.0% |
| TTCAAGTGAAATTGAAGCAA+TGG | + | chr1_1:67973561-67973580 | None:intergenic | 30.0% | |
| !! | TTGATTGGTTTGCTAAGTTA+TGG | - | chr1_1:67973649-67973668 | Msa0038490:intron | 30.0% |
| !! | TGATTGGTTTGCTAAGTTAT+GGG | - | chr1_1:67973650-67973669 | Msa0038490:intron | 30.0% |
| TCAACAACAAAATTACCGAT+GGG | - | chr1_1:67973840-67973859 | Msa0038490:CDS | 30.0% | |
| GATGTATATAGAATTCCATC+TGG | + | chr1_1:67973918-67973937 | None:intergenic | 30.0% | |
| AATTGATTGTGTTGAACTAG+AGG | - | chr1_1:67974022-67974041 | Msa0038490:intron | 30.0% | |
| ACCTATGTTAAGATTGATGA+TGG | + | chr1_1:67974078-67974097 | None:intergenic | 30.0% | |
| ATCCAAACACTCAATAAATG+TGG | - | chr1_1:67974224-67974243 | Msa0038490:intron | 30.0% | |
| AACCACATTTATTGAGTGTT+TGG | + | chr1_1:67974229-67974248 | None:intergenic | 30.0% | |
| !!! | GACGAGTTTTAAGAATATTG+AGG | - | chr1_1:67974332-67974351 | Msa0038490:CDS | 30.0% |
| TTCATCTTAAAACTCGTCTT+AGG | + | chr1_1:67974358-67974377 | None:intergenic | 30.0% | |
| !!! | CTTTTGACTTTTAACCCATT+TGG | - | chr1_1:67974447-67974466 | Msa0038490:intron | 30.0% |
| !!! | CAAATGTGCCATTTTTTATG+AGG | - | chr1_1:67974602-67974621 | Msa0038490:intron | 30.0% |
| !! | TTTTGCTTTGGTGATTGAAT+AGG | - | chr1_1:67974783-67974802 | Msa0038490:intron | 30.0% |
| ! | AATTTCAGGCCATAAGTTTT+TGG | - | chr1_1:67974846-67974865 | Msa0038490:intron | 30.0% |
| ! | ATTTCAGGCCATAAGTTTTT+GGG | - | chr1_1:67974847-67974866 | Msa0038490:intron | 30.0% |
| !!! | TTTTTTTGAGAGCATACCAA+AGG | + | chr1_1:67975002-67975021 | None:intergenic | 30.0% |
| TTTGGTATGCTCTCAAAAAA+AGG | - | chr1_1:67975001-67975020 | Msa0038490:intron | 30.0% | |
| TTGGTATGCTCTCAAAAAAA+GGG | - | chr1_1:67975002-67975021 | Msa0038490:intron | 30.0% | |
| CTCAAAAAAAGGGGTTTAAT+TGG | - | chr1_1:67975012-67975031 | Msa0038490:intron | 30.0% | |
| TTACTGAAAAACGATCCATT+TGG | - | chr1_1:67975268-67975287 | Msa0038490:intron | 30.0% | |
| TTGTTCATCTTTAGACCAAA+TGG | + | chr1_1:67975286-67975305 | None:intergenic | 30.0% | |
| ! | ACTCTAAGAATACAATGAGA+AGG | + | chr1_1:67975494-67975513 | None:intergenic | 30.0% |
| ATACTCAAAACCCAAATCTA+AGG | + | chr1_1:67975559-67975578 | None:intergenic | 30.0% | |
| ATGAAGTGCATAAGAAACAT+TGG | - | chr1_1:67975647-67975666 | Msa0038490:intron | 30.0% | |
| ! | GCTACTTGCTAAAATTAAGG+TGG | - | chr1_1:67971051-67971070 | Msa0038490:three_prime_UTR | 35.0% |
| ! | CTCCTATTCTTGATTTTGGA+TGG | - | chr1_1:67971376-67971395 | Msa0038490:CDS | 35.0% |
| AACAATCCCTATAAGTTTGC+AGG | - | chr1_1:67971417-67971436 | Msa0038490:CDS | 35.0% | |
| GAGTCTACATTCAGATTTCT+AGG | + | chr1_1:67971665-67971684 | None:intergenic | 35.0% | |
| AGACTCTGTTGATCAATTTC+AGG | - | chr1_1:67971679-67971698 | Msa0038490:CDS | 35.0% | |
| GACTCTGTTGATCAATTTCA+GGG | - | chr1_1:67971680-67971699 | Msa0038490:CDS | 35.0% | |
| TCAGGGATAAAAGTGACTAA+CGG | - | chr1_1:67971697-67971716 | Msa0038490:CDS | 35.0% | |
| GACTAACATAGTCTACATTC+AGG | - | chr1_1:67971775-67971794 | Msa0038490:CDS | 35.0% | |
| TGACGACTCATTTCCTATTT+AGG | - | chr1_1:67971835-67971854 | Msa0038490:CDS | 35.0% | |
| GACGACTCATTTCCTATTTA+GGG | - | chr1_1:67971836-67971855 | Msa0038490:CDS | 35.0% | |
| AGACACTTTAGTCCCTAAAT+AGG | + | chr1_1:67971851-67971870 | None:intergenic | 35.0% | |
| AAAAAAGCCTGCAAACTTGT+AGG | - | chr1_1:67972091-67972110 | Msa0038490:intron | 35.0% | |
| AAAAAGCCTGCAAACTTGTA+GGG | - | chr1_1:67972092-67972111 | Msa0038490:intron | 35.0% | |
| GCCATCCAAAATGAAGAATA+GGG | - | chr1_1:67972138-67972157 | Msa0038490:intron | 35.0% | |
| CCATCCAAAATGAAGAATAG+GGG | - | chr1_1:67972139-67972158 | Msa0038490:intron | 35.0% | |
| ! | AATGCCCCTATTCTTCATTT+TGG | + | chr1_1:67972146-67972165 | None:intergenic | 35.0% |
| GTTATATAAAGGAGGGTTTG+AGG | - | chr1_1:67972296-67972315 | Msa0038490:intron | 35.0% | |
| !! | ATGTAAAGTGTTGACGGTAA+AGG | + | chr1_1:67972447-67972466 | None:intergenic | 35.0% |
| GTTGCTAATTAACGAAGAGA+AGG | + | chr1_1:67972487-67972506 | None:intergenic | 35.0% | |
| CTTTGACAACATGCATATGT+GGG | + | chr1_1:67972544-67972563 | None:intergenic | 35.0% | |
| TCTTTGACAACATGCATATG+TGG | + | chr1_1:67972545-67972564 | None:intergenic | 35.0% | |
| GATTCAAGAAGGAAACAACA+TGG | - | chr1_1:67972722-67972741 | Msa0038490:CDS | 35.0% | |
| ACTTACAAACCTTGATGTCA+CGG | - | chr1_1:67972797-67972816 | Msa0038490:CDS | 35.0% | |
| TAAGTTACGCATGTTGTACT+TGG | + | chr1_1:67972886-67972905 | None:intergenic | 35.0% | |
| AAGTACAACATGCGTAACTT+AGG | - | chr1_1:67972885-67972904 | Msa0038490:intron | 35.0% | |
| CTATTTGTCACAATTCAAGG+AGG | + | chr1_1:67973064-67973083 | None:intergenic | 35.0% | |
| GCACTATTTGTCACAATTCA+AGG | + | chr1_1:67973067-67973086 | None:intergenic | 35.0% | |
| CAATTTCACTTGAACAATGC+TGG | - | chr1_1:67973567-67973586 | Msa0038490:intron | 35.0% | |
| TAAGTTATGGGAGATAGAGA+AGG | - | chr1_1:67973662-67973681 | Msa0038490:intron | 35.0% | |
| AGATAGAGAAGGATGAGTAT+TGG | - | chr1_1:67973673-67973692 | Msa0038490:intron | 35.0% | |
| GATAGAGAAGGATGAGTATT+GGG | - | chr1_1:67973674-67973693 | Msa0038490:intron | 35.0% | |
| ! | ATAGAGAAGGATGAGTATTG+GGG | - | chr1_1:67973675-67973694 | Msa0038490:intron | 35.0% |
| !! | AATCTGCATGGAATTTTAGC+AGG | - | chr1_1:67973726-67973745 | Msa0038490:intron | 35.0% |
| !! | ATCTGCATGGAATTTTAGCA+GGG | - | chr1_1:67973727-67973746 | Msa0038490:intron | 35.0% |
| CTCAACAACAAAATTACCGA+TGG | - | chr1_1:67973839-67973858 | Msa0038490:CDS | 35.0% | |
| ATGCTTATCACTTATCCCAT+CGG | + | chr1_1:67973858-67973877 | None:intergenic | 35.0% | |
| AGAAGAGAACAATTACCAGA+TGG | - | chr1_1:67973900-67973919 | Msa0038490:CDS | 35.0% | |
| !! | ATGTTAAGATTGATGATGGC+TGG | + | chr1_1:67974074-67974093 | None:intergenic | 35.0% |
| GCCATCATCAATCTTAACAT+AGG | - | chr1_1:67974074-67974093 | Msa0038490:intron | 35.0% | |
| CAATTCTACATTCACTGTGA+CGG | - | chr1_1:67974260-67974279 | Msa0038490:intron | 35.0% | |
| TTTGCTCATGTCAAAGTCTT+AGG | - | chr1_1:67974504-67974523 | Msa0038490:intron | 35.0% | |
| AGTCTTAGGTTCAATCTCTT+CGG | - | chr1_1:67974518-67974537 | Msa0038490:intron | 35.0% | |
| ! | GTGGAATATTTTCTCCAACA+AGG | - | chr1_1:67974702-67974721 | Msa0038490:intron | 35.0% |
| GAAATTGTTACACTGTCGAT+GGG | + | chr1_1:67974832-67974851 | None:intergenic | 35.0% | |
| TGAAATTGTTACACTGTCGA+TGG | + | chr1_1:67974833-67974852 | None:intergenic | 35.0% | |
| ATCGACAGTGTAACAATTTC+AGG | - | chr1_1:67974832-67974851 | Msa0038490:intron | 35.0% | |
| ATGTTGACATCATTGCTTCA+AGG | - | chr1_1:67974932-67974951 | Msa0038490:intron | 35.0% | |
| TGTTGACATCATTGCTTCAA+GGG | - | chr1_1:67974933-67974952 | Msa0038490:intron | 35.0% | |
| TGGTATGCTCTCAAAAAAAG+GGG | - | chr1_1:67975003-67975022 | Msa0038490:intron | 35.0% | |
| ATGATCACTTTACTCGTAGA+TGG | - | chr1_1:67975160-67975179 | Msa0038490:intron | 35.0% | |
| CTTTACTCGTAGATGGAATT+TGG | - | chr1_1:67975167-67975186 | Msa0038490:intron | 35.0% | |
| AAAAGAGTTAATGCATGCCT+TGG | + | chr1_1:67975454-67975473 | None:intergenic | 35.0% | |
| TATGCACTTCATGCATTTCT+AGG | + | chr1_1:67975639-67975658 | None:intergenic | 35.0% | |
| ! | TTTTGAACAATGTGATGCTG+CGG | + | chr1_1:67975687-67975706 | None:intergenic | 35.0% |
| TGTGGCTGCTATTACTATAC+TGG | + | chr1_1:67971023-67971042 | None:intergenic | 40.0% | |
| AGCAAGTAGCAACATAAGTG+TGG | + | chr1_1:67971041-67971060 | None:intergenic | 40.0% | |
| CGCCATCCAAAATCAAGAAT+AGG | + | chr1_1:67971381-67971400 | None:intergenic | 40.0% | |
| TCCATTTCAAATGGAGAGCA+AGG | - | chr1_1:67971467-67971486 | Msa0038490:CDS | 40.0% | |
| TCCTTGCTCTCCATTTGAAA+TGG | + | chr1_1:67972047-67972066 | None:intergenic | 40.0% | |
| CGCCATTTGAAAAGAAGAAC+AGG | + | chr1_1:67972006-67972025 | None:intergenic | 40.0% | |
| ACTAACGGAGTCTACATTCA+GGG | - | chr1_1:67971712-67971731 | Msa0038490:CDS | 40.0% | |
| ! | TCAGGGACTAAGTTGACTAA+CGG | - | chr1_1:67971729-67971748 | Msa0038490:CDS | 40.0% |
| TCCTTGCTCTCCATTTGAAA+TGG | - | chr1_1:67972047-67972066 | Msa0038490:intron | 40.0% | |
| TCCATTTCAAATGGAGAGCA+AGG | + | chr1_1:67971467-67971486 | None:intergenic | 40.0% | |
| AACAATCCCTACAAGTTTGC+AGG | + | chr1_1:67972101-67972120 | None:intergenic | 40.0% | |
| CGCCATCCAAAATGAAGAAT+AGG | - | chr1_1:67972137-67972156 | Msa0038490:intron | 40.0% | |
| ! | CCCCTATTCTTCATTTTGGA+TGG | + | chr1_1:67972142-67972161 | None:intergenic | 40.0% |
| TACTTGTGAATATGTGCAGC+AGG | + | chr1_1:67972413-67972432 | None:intergenic | 40.0% | |
| !! | GGGTGTATGTAAAGTGTTGA+CGG | + | chr1_1:67972453-67972472 | None:intergenic | 40.0% |
| AAGAGAAGGGAAGTGAATGT+GGG | + | chr1_1:67972473-67972492 | None:intergenic | 40.0% | |
| CTCTCTGCATCAGGAATTAA+AGG | + | chr1_1:67972753-67972772 | None:intergenic | 40.0% | |
| ACAACATGCGTAACTTAGGT+AGG | - | chr1_1:67972889-67972908 | Msa0038490:intron | 40.0% | |
| ! | TAACTTAGGTAGGCTTTTGG+TGG | - | chr1_1:67972899-67972918 | Msa0038490:intron | 40.0% |
| ! | AGGAGGTGTGACTGAAAAAT+AGG | + | chr1_1:67973047-67973066 | None:intergenic | 40.0% |
| AATGCTGGAGATCCATTTCT+TGG | - | chr1_1:67973582-67973601 | Msa0038490:intron | 40.0% | |
| CAGCTTCTCTCTCAATTCAA+TGG | - | chr1_1:67973608-67973627 | Msa0038490:intron | 40.0% | |
| TTGAAGTTAGCGTGCTTGAT+TGG | - | chr1_1:67973634-67973653 | Msa0038490:intron | 40.0% | |
| AATTCCATGCAGATTCCCTT+CGG | + | chr1_1:67973721-67973740 | None:intergenic | 40.0% | |
| ! | AAGGTTGGCTCTTTGTTATC+AGG | - | chr1_1:67973996-67974015 | Msa0038490:CDS | 40.0% |
| !! | GATGGCTGGTTTATACTTGT+GGG | + | chr1_1:67974060-67974079 | None:intergenic | 40.0% |
| !! | TGATGGCTGGTTTATACTTG+TGG | + | chr1_1:67974061-67974080 | None:intergenic | 40.0% |
| GTTGTAGGGACAACTTTGAA+AGG | - | chr1_1:67974176-67974195 | Msa0038490:intron | 40.0% | |
| ! | GACTTTTAACCCATTTGGGT+TGG | - | chr1_1:67974452-67974471 | Msa0038490:intron | 40.0% |
| !! | AATCTCTTCGGTGCCAATTT+CGG | - | chr1_1:67974530-67974549 | Msa0038490:intron | 40.0% |
| GGTTTCTTGAAGCTAATCCT+TGG | + | chr1_1:67974811-67974830 | None:intergenic | 40.0% | |
| ATGGGCATCCCAAAAACTTA+TGG | + | chr1_1:67974858-67974877 | None:intergenic | 40.0% | |
| TCAAAACACCACAAGGTGAT+GGG | + | chr1_1:67974876-67974895 | None:intergenic | 40.0% | |
| ATCAAAACACCACAAGGTGA+TGG | + | chr1_1:67974877-67974896 | None:intergenic | 40.0% | |
| CGAGTTATCAAAACACCACA+AGG | + | chr1_1:67974883-67974902 | None:intergenic | 40.0% | |
| AGAGCATACCAAAGGAAGAT+GGG | + | chr1_1:67974994-67975013 | None:intergenic | 40.0% | |
| CTAAATCTACTACGTGATGC+TGG | - | chr1_1:67975081-67975100 | Msa0038490:intron | 40.0% | |
| ACGAGTAAAGTGATCATCCA+GGG | + | chr1_1:67975157-67975176 | None:intergenic | 40.0% | |
| TACGAGTAAAGTGATCATCC+AGG | + | chr1_1:67975158-67975177 | None:intergenic | 40.0% | |
| CAACAAAAATACTGCGCATG+TGG | - | chr1_1:67975194-67975213 | Msa0038490:intron | 40.0% | |
| TGTGATTTCGGACCTTATTG+AGG | - | chr1_1:67975397-67975416 | Msa0038490:intron | 40.0% | |
| GTGATTTCGGACCTTATTGA+GGG | - | chr1_1:67975398-67975417 | Msa0038490:intron | 40.0% | |
| ! | TGGTTTGTGACTATAGTCCA+AGG | - | chr1_1:67975434-67975453 | Msa0038490:intron | 40.0% |
| TTTGAACAATGTGATGCTGC+GGG | + | chr1_1:67975686-67975705 | None:intergenic | 40.0% | |
| !! | TAAGTTGGTGCGTACACATG+CGG | + | chr1_1:67970997-67971016 | None:intergenic | 45.0% |
| GACTAACGGAGTCTACATTC+AGG | - | chr1_1:67971711-67971730 | Msa0038490:CDS | 45.0% | |
| !! | ACTAACGGATTCTGCACTCA+GGG | - | chr1_1:67971744-67971763 | Msa0038490:CDS | 45.0% |
| AATATGCTTCTGGTGACTCG+TGG | + | chr1_1:67972336-67972355 | None:intergenic | 45.0% | |
| GAAGAGAAGGGAAGTGAATG+TGG | + | chr1_1:67972474-67972493 | None:intergenic | 45.0% | |
| TCATCATGTCTCTCTGCATC+AGG | + | chr1_1:67972762-67972781 | None:intergenic | 45.0% | |
| AGGTGAAACGGATGCCAATT+TGG | - | chr1_1:67972827-67972846 | Msa0038490:intron | 45.0% | |
| ! | GCGTAACTTAGGTAGGCTTT+TGG | - | chr1_1:67972896-67972915 | Msa0038490:intron | 45.0% |
| GAGAAGCTGCTTCCAAGAAA+TGG | + | chr1_1:67973597-67973616 | None:intergenic | 45.0% | |
| TATTGGGGATACGTCACAAC+CGG | - | chr1_1:67973690-67973709 | Msa0038490:intron | 45.0% | |
| GTATCGAATGCAGTGTGTGA+AGG | - | chr1_1:67973977-67973996 | Msa0038490:CDS | 45.0% | |
| ! | GTAGGGACAACTTTGAAAGG+AGG | - | chr1_1:67974179-67974198 | Msa0038490:intron | 45.0% |
| ACCATCAGACCAACCCAAAT+GGG | + | chr1_1:67974464-67974483 | None:intergenic | 45.0% | |
| TACCATCAGACCAACCCAAA+TGG | + | chr1_1:67974465-67974484 | None:intergenic | 45.0% | |
| ! | CCAAACTAGCCTACCGAAAT+TGG | + | chr1_1:67974546-67974565 | None:intergenic | 45.0% |
| ! | CCAATTTCGGTAGGCTAGTT+TGG | - | chr1_1:67974543-67974562 | Msa0038490:intron | 45.0% |
| TGGTGATTGAATAGGCTCCA+AGG | - | chr1_1:67974791-67974810 | Msa0038490:intron | 45.0% | |
| TTCAAGGGATGCCACAATCA+CGG | - | chr1_1:67974948-67974967 | Msa0038490:intron | 45.0% | |
| ! | GAGAGCATACCAAAGGAAGA+TGG | + | chr1_1:67974995-67975014 | None:intergenic | 45.0% |
| CTACTACGTGATGCTGGAAT+TGG | - | chr1_1:67975087-67975106 | Msa0038490:intron | 45.0% | |
| CGAGTAAAGTGATCATCCAG+GGG | + | chr1_1:67975156-67975175 | None:intergenic | 45.0% | |
| ACGTCGTTTGCAATGCATAG+AGG | + | chr1_1:67975315-67975334 | None:intergenic | 45.0% | |
| CTATGCATTGCAAACGACGT+TGG | - | chr1_1:67975315-67975334 | Msa0038490:intron | 45.0% | |
| TTTCGGACCTTATTGAGGGT+AGG | - | chr1_1:67975402-67975421 | Msa0038490:intron | 45.0% | |
| TTCACGTCCTACCCTCAATA+AGG | + | chr1_1:67975412-67975431 | None:intergenic | 45.0% | |
| TTGAGGGTAGGACGTGAAAA+TGG | - | chr1_1:67975414-67975433 | Msa0038490:intron | 45.0% | |
| !!! | TAAATTTATTTGTTATATAA+AGG | - | chr1_1:67972285-67972304 | Msa0038490:intron | 5.0% |
| !!! | TAATTTTATAAAATAGAATT+CGG | - | chr1_1:67973321-67973340 | Msa0038490:intron | 5.0% |
| !! | AAAAAAAAAAAAAAAATTGT+AGG | + | chr1_1:67973765-67973784 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTACATAT+AGG | - | chr1_1:67973774-67973793 | Msa0038490:intron | 5.0% |
| !!! | TTTTTTTTTTTTTACATATA+GGG | - | chr1_1:67973775-67973794 | Msa0038490:intron | 5.0% |
| !! | AAGTTGGTGCGTACACATGC+GGG | + | chr1_1:67970996-67971015 | None:intergenic | 50.0% |
| !! | GACTAACGGATTCTGCACTC+AGG | - | chr1_1:67971743-67971762 | Msa0038490:CDS | 50.0% |
| CTATGCACTCCGTGACATCA+AGG | + | chr1_1:67972809-67972828 | None:intergenic | 50.0% | |
| CTTGATGTCACGGAGTGCAT+AGG | - | chr1_1:67972807-67972826 | Msa0038490:CDS | 50.0% | |
| CACGGAGTGCATAGGTGAAA+CGG | - | chr1_1:67972815-67972834 | Msa0038490:CDS | 50.0% | |
| CGAATGCAGTGTGTGAAGGT+TGG | - | chr1_1:67973981-67974000 | Msa0038490:CDS | 50.0% | |
| ! | CACTGTGACGGAGCTCTATT+TGG | - | chr1_1:67974272-67974291 | Msa0038490:intron | 50.0% |
| !! | ACCCATTTGGGTTGGTCTGA+TGG | - | chr1_1:67974460-67974479 | Msa0038490:intron | 50.0% |
| !! | TCTTCGGTGCCAATTTCGGT+AGG | - | chr1_1:67974534-67974553 | Msa0038490:intron | 50.0% |
| TCAAGGGATGCCACAATCAC+GGG | - | chr1_1:67974949-67974968 | Msa0038490:intron | 50.0% | |
| AGTTGTGTTTGAGAGACCCC+TGG | - | chr1_1:67975137-67975156 | Msa0038490:intron | 50.0% | |
| ! | GTAATGGGGGAAGCTTGTGA+AGG | + | chr1_1:67975755-67975774 | None:intergenic | 50.0% |
| TCACAACCGGTGGAACCGAA+GGG | - | chr1_1:67973703-67973722 | Msa0038490:intron | 55.0% | |
| CAGATTCCCTTCGGTTCCAC+CGG | + | chr1_1:67973712-67973731 | None:intergenic | 55.0% | |
| GGAACCGAAGGGAATCTGCA+TGG | - | chr1_1:67973714-67973733 | Msa0038490:intron | 55.0% | |
| TTGGGATGCCCATCACCTTG+TGG | - | chr1_1:67974865-67974884 | Msa0038490:intron | 55.0% | |
| ACAACGGCTACCCGTGATTG+TGG | + | chr1_1:67974962-67974981 | None:intergenic | 55.0% | |
| ACAATCACGGGTAGCCGTTG+TGG | - | chr1_1:67974961-67974980 | Msa0038490:intron | 55.0% | |
| CAATCACGGGTAGCCGTTGT+GGG | - | chr1_1:67974962-67974981 | Msa0038490:intron | 55.0% | |
| ! | AGATGGGAGCATGCCCACAA+CGG | + | chr1_1:67974978-67974997 | None:intergenic | 55.0% |
| GGCATGCTCCCATCTTCCTT+TGG | - | chr1_1:67974983-67975002 | Msa0038490:intron | 55.0% | |
| TGGGGATACGTCACAACCGG+TGG | - | chr1_1:67973693-67973712 | Msa0038490:intron | 60.0% | |
| GTCACAACCGGTGGAACCGA+AGG | - | chr1_1:67973702-67973721 | Msa0038490:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 67970948 | 67975793 | 67970948 | ID=Msa0038490;Name=Msa0038490 |
| chr1_1 | mRNA | 67970948 | 67975793 | 67970948 | ID=Msa0038490-mRNA-1;Parent=Msa0038490;Name=Msa0038490-mRNA-1;_AED=0.16;_eAED=0.16;_QI=201|1|1|1|0.83|0.71|7|410|460 |
| chr1_1 | exon | 67970948 | 67971936 | 67970948 | ID=Msa0038490-mRNA-1:exon:22094;Parent=Msa0038490-mRNA-1 |
| chr1_1 | exon | 67972422 | 67972558 | 67972422 | ID=Msa0038490-mRNA-1:exon:22093;Parent=Msa0038490-mRNA-1 |
| chr1_1 | exon | 67972646 | 67972839 | 67972646 | ID=Msa0038490-mRNA-1:exon:22092;Parent=Msa0038490-mRNA-1 |
| chr1_1 | exon | 67972993 | 67973224 | 67972993 | ID=Msa0038490-mRNA-1:exon:22091;Parent=Msa0038490-mRNA-1 |
| chr1_1 | exon | 67973835 | 67974031 | 67973835 | ID=Msa0038490-mRNA-1:exon:22090;Parent=Msa0038490-mRNA-1 |
| chr1_1 | exon | 67974312 | 67974434 | 67974312 | ID=Msa0038490-mRNA-1:exon:22089;Parent=Msa0038490-mRNA-1 |
| chr1_1 | exon | 67975672 | 67975793 | 67975672 | ID=Msa0038490-mRNA-1:exon:22088;Parent=Msa0038490-mRNA-1 |
| chr1_1 | five_prime_UTR | 67975672 | 67975793 | 67975672 | ID=Msa0038490-mRNA-1:five_prime_utr;Parent=Msa0038490-mRNA-1 |
| chr1_1 | five_prime_UTR | 67974356 | 67974434 | 67974356 | ID=Msa0038490-mRNA-1:five_prime_utr;Parent=Msa0038490-mRNA-1 |
| chr1_1 | CDS | 67974312 | 67974355 | 67974312 | ID=Msa0038490-mRNA-1:cds;Parent=Msa0038490-mRNA-1 |
| chr1_1 | CDS | 67973835 | 67974031 | 67973835 | ID=Msa0038490-mRNA-1:cds;Parent=Msa0038490-mRNA-1 |
| chr1_1 | CDS | 67972993 | 67973224 | 67972993 | ID=Msa0038490-mRNA-1:cds;Parent=Msa0038490-mRNA-1 |
| chr1_1 | CDS | 67972646 | 67972839 | 67972646 | ID=Msa0038490-mRNA-1:cds;Parent=Msa0038490-mRNA-1 |
| chr1_1 | CDS | 67972422 | 67972558 | 67972422 | ID=Msa0038490-mRNA-1:cds;Parent=Msa0038490-mRNA-1 |
| chr1_1 | CDS | 67971358 | 67971936 | 67971358 | ID=Msa0038490-mRNA-1:cds;Parent=Msa0038490-mRNA-1 |
| chr1_1 | three_prime_UTR | 67970948 | 67971357 | 67970948 | ID=Msa0038490-mRNA-1:three_prime_utr;Parent=Msa0038490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
