AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038500 MtrunA17_Chr1g0202071 93.767 369 23 0 70 438 37 405 0.0 734
Msa0038500 MtrunA17_Chr1g0202041 77.212 452 88 4 1 437 59 510 0.0 729
Msa0038500 MtrunA17_Chr4g0039151 66.589 431 137 1 14 437 34 464 0.0 610
Msa0038500 MtrunA17_Chr1g0202091 62.281 456 153 2 1 437 1 456 0.0 600
Msa0038500 MtrunA17_Chr2g0278631 55.889 433 178 2 18 437 53 485 0.0 523
Msa0038500 MtrunA17_Chr1g0202061 70.238 336 93 1 109 437 3 338 0.0 509
Msa0038500 MtrunA17_Chr4g0039161 75.472 159 39 0 109 267 3 161 1.57e-89 269
Msa0038500 MtrunA17_Chr4g0039171 64.062 192 60 2 254 437 16 206 1.41e-84 258
Msa0038500 MtrunA17_Chr6g0479491 66.429 140 47 0 172 311 1 140 5.96e-69 215
Msa0038500 MtrunA17_Chr1g0202081 82.857 70 6 1 1 70 55 118 2.46e-30 115
Msa0038500 MtrunA17_Chr2g0278611 50.000 106 46 1 334 432 7 112 5.72e-28 107
Msa0038500 MtrunA17_Chr6g0479481 50.000 84 35 1 361 437 1 84 3.87e-21 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038500 AT1G43710.1 59.500 400 156 1 44 437 82 481 0.0 529

Find 120 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAATAATTTCATCTAATT+TGG 0.138549 1_1:-67985599 None:intergenic
TTATCATTTATGTTTCTTTA+TGG 0.196344 1_1:-67984929 None:intergenic
CAATGCTGGAGATCCATTTA+AGG 0.203982 1_1:+67987327 Msa0038500:CDS
TGAATGCATGTTACCTAAAA+AGG 0.205457 1_1:+67989559 Msa0038500:CDS
GATAGAGAAAGGTGATTATT+GGG 0.215490 1_1:+67987420 Msa0038500:CDS
TTGATTGGTTTGCTAAATTA+TGG 0.217751 1_1:+67987395 Msa0038500:CDS
CCATAACTACTTCCCTTAAA+TGG 0.221731 1_1:-67987340 None:intergenic
AGATAGAGAAAGGTGATTAT+TGG 0.250760 1_1:+67987419 Msa0038500:CDS
GTGGATTAAGTTGTAGCTTT+AGG 0.267114 1_1:+67985077 Msa0038500:five_prime_UTR
TATCATTTATGTTTCTTTAT+GGG 0.285434 1_1:-67984928 None:intergenic
ACACATAAATACAGAGAAAA+TGG 0.290951 1_1:+67985438 Msa0038500:exon
ATTGTGAGTTTATTCGAAAA+TGG 0.297142 1_1:+67989655 Msa0038500:CDS
ACATATAAAATTCACTCATT+TGG 0.310985 1_1:+67985379 Msa0038500:five_prime_UTR
GTTATCAATAGCTCCTTTCA+TGG 0.318998 1_1:-67988941 None:intergenic
TTTGATTTGATGATAAATAA+AGG 0.321245 1_1:+67984537 Msa0038500:five_prime_UTR
ATATCGAGGTGATTGCTTCT+AGG 0.321468 1_1:+67989427 Msa0038500:CDS
AAAGAAATAAAATATATATT+AGG 0.326259 1_1:-67984799 None:intergenic
ATTGGAAGTATAACCATTTC+AGG 0.330888 1_1:+67989327 Msa0038500:CDS
ATATCCGGTGGTCTATTAAT+TGG 0.342951 1_1:+67984888 Msa0038500:five_prime_UTR
TGATAAATGAACAAACGTTT+TGG 0.346735 1_1:+67984946 Msa0038500:five_prime_UTR
TACAATTAAGTAGTATAAGT+TGG 0.361855 1_1:+67984989 Msa0038500:five_prime_UTR
TTGTTGTGGTGTCAAACATT+TGG 0.366013 1_1:-67984498 None:intergenic
TATGTAACATTCTTTCGTTT+TGG 0.370715 1_1:-67985313 None:intergenic
TGTTGTGGTGTCAAACATTT+GGG 0.371821 1_1:-67984497 None:intergenic
TGGTTGTCAAAATACCTTTA+CGG 0.378248 1_1:-67984747 None:intergenic
TTGTGCCTTGCAGACAAAAT+TGG 0.383225 1_1:+67989789 Msa0038500:CDS
AATAAAACACCACAAGGAAT+TGG 0.385444 1_1:-67989369 None:intergenic
GCTATCATCAATTTAAATAT+AGG 0.387923 1_1:+67988701 Msa0038500:CDS
CATTGTGATGGAGCTTTGTT+CGG 0.393038 1_1:+67989024 Msa0038500:CDS
TGTTTGACACCACAACAAAT+AGG 0.393359 1_1:+67984503 Msa0038500:five_prime_UTR
TTGAAATATCTGTGCTTGAT+TGG 0.396592 1_1:+67987380 Msa0038500:CDS
CGAATAAACTCACAATCTAA+AGG 0.397210 1_1:-67989648 None:intergenic
CCATTTAAGGGAAGTAGTTA+TGG 0.398775 1_1:+67987340 Msa0038500:CDS
ACACACCAACACCTTATCTA+AGG 0.402722 1_1:+67989404 Msa0038500:CDS
GACTCTACTTCTTGCTCATA+AGG 0.407807 1_1:+67988670 Msa0038500:CDS
TTACTCACCTGTTCAAGAAA+TGG 0.415812 1_1:-67989057 None:intergenic
ATATTTAAATTGATGATAGC+TGG 0.419466 1_1:-67988698 None:intergenic
TGTTAGATTGATTCGAGCAT+TGG 0.420041 1_1:-67985146 None:intergenic
ACTTCCAATGGACTTCTTGA+AGG 0.422174 1_1:-67989313 None:intergenic
TGATTGGTTTGCTAAATTAT+GGG 0.422539 1_1:+67987396 Msa0038500:CDS
AGCTATTGATAACATTGATA+TGG 0.427718 1_1:+67988951 Msa0038500:CDS
GTACATTGTCGGACAACAAT+TGG 0.429921 1_1:-67984767 None:intergenic
GGAGTATTATTGTACATTGT+CGG 0.431051 1_1:-67984778 None:intergenic
GGCACTGAAGGAAATCTTCA+TGG 0.431139 1_1:+67987460 Msa0038500:CDS
AAAAGGAAACTTCGCGATGC+CGG 0.437474 1_1:+67989576 Msa0038500:CDS
CGTTTCTATATTCATTGTGA+TGG 0.445360 1_1:+67989012 Msa0038500:CDS
TTGCCATCACCAATTGCAAT+GGG 0.455033 1_1:+67985566 Msa0038500:CDS
TTTCTTATACGGTGTATATC+CGG 0.458007 1_1:+67984873 Msa0038500:five_prime_UTR
TTCATTGAATTTGATATCAA+AGG 0.460723 1_1:+67985241 Msa0038500:five_prime_UTR
AATGCTGGAGATCCATTTAA+GGG 0.464976 1_1:+67987328 Msa0038500:CDS
TACTTAATTGTATCAAAATA+CGG 0.467789 1_1:-67984978 None:intergenic
TTGGTTTGATTTGGTGGTGT+TGG 0.467968 1_1:-67985294 None:intergenic
GACTTCTTGAAGGTAATCCT+TGG 0.471834 1_1:-67989303 None:intergenic
TATCGAGGTGATTGCTTCTA+GGG 0.473060 1_1:+67989428 Msa0038500:CDS
ATTGTGTCTTGGAAGTTATA+CGG 0.474458 1_1:+67985055 Msa0038500:five_prime_UTR
TTGATTCGAGCATTGGCAAA+TGG 0.477288 1_1:-67985139 None:intergenic
AAATGGAATTTAGCTTATGA+AGG 0.484386 1_1:+67989672 Msa0038500:CDS
TATTGGGGATACGTCACAAC+TGG 0.484726 1_1:+67987436 Msa0038500:CDS
GATGCTGCCATTTCTTGAAC+AGG 0.490155 1_1:+67989050 Msa0038500:CDS
CTACAAAATATATACTATGT+GGG 0.494687 1_1:+67984438 Msa0038500:five_prime_UTR
ATTACCTTCAAGAAGTCCAT+TGG 0.495782 1_1:+67989309 Msa0038500:CDS
GCACGTTACTATTCAAATGT+TGG 0.496865 1_1:+67989722 Msa0038500:CDS
TGCCAGCTTGAATTGTGTCT+TGG 0.498291 1_1:+67985044 Msa0038500:five_prime_UTR
GAATCAAATATGCAGTATAC+AGG 0.498645 1_1:-67989826 None:intergenic
TCAAGCTGGCACACATTTCG+AGG 0.502666 1_1:-67985032 None:intergenic
GAGGTATACAAAATCCCATC+TGG 0.512731 1_1:-67988542 None:intergenic
CACCTCGATATCCTTAGATA+AGG 0.516375 1_1:-67989415 None:intergenic
ATTCAACATTGTACAAATGC+CGG 0.518161 1_1:-67989595 None:intergenic
ACGTGTCTCCCCATTGCAAT+TGG 0.522010 1_1:-67985575 None:intergenic
AAACTTTGATTACGACGCAT+TGG 0.522500 1_1:+67987279 Msa0038500:CDS
GTCGGTCATCCTATTTGTTG+TGG 0.526628 1_1:-67984512 None:intergenic
TGAAATGGTTATACTTCCAA+TGG 0.529728 1_1:-67989325 None:intergenic
TCTAGGGATGCCACAATCAC+GGG 0.530868 1_1:+67989444 Msa0038500:CDS
TCTGAATAAAGAAACCGTAA+AGG 0.534782 1_1:+67984733 Msa0038500:five_prime_UTR
AGAATGCAATGCATGAAAGT+TGG 0.535151 1_1:+67988608 Msa0038500:CDS
GTCACAACTGGTGGCACTGA+AGG 0.539652 1_1:+67987448 Msa0038500:CDS
CATTGCAATTGGTGATGGCA+AGG 0.543746 1_1:-67985564 None:intergenic
TCTACAAAATATATACTATG+TGG 0.545654 1_1:+67984437 Msa0038500:five_prime_UTR
TTCTAGGGATGCCACAATCA+CGG 0.551015 1_1:+67989443 Msa0038500:CDS
GCACTCTGGAGAAGAAGATA+AGG 0.554910 1_1:+67985504 Msa0038500:CDS
TTATCATCAAATCAAATAGT+CGG 0.555535 1_1:-67984530 None:intergenic
CGAGCATTGGCAAATGGCAA+TGG 0.557921 1_1:-67985133 None:intergenic
TGATATGGTAATTGAAACAC+TGG 0.562632 1_1:+67988966 Msa0038500:CDS
ACTTCGACTACCCGTGATTG+TGG 0.567833 1_1:-67989454 None:intergenic
ATAGAGAAAGGTGATTATTG+GGG 0.570905 1_1:+67987421 Msa0038500:CDS
AAATTATGGGAGATAGAGAA+AGG 0.572365 1_1:+67987409 Msa0038500:CDS
CTCCCCATTGCAATTGGTGA+TGG 0.573696 1_1:-67985569 None:intergenic
GAAATTCAAAAGAATAACAA+TGG 0.575231 1_1:+67985532 Msa0038500:CDS
GGGTGATCTAATAGGCTCCA+AGG 0.578170 1_1:+67989286 Msa0038500:intron
CTTGCCATCACCAATTGCAA+TGG 0.579438 1_1:+67985565 Msa0038500:CDS
TTTGATAAACTCATCAACAA+AGG 0.584207 1_1:-67989748 None:intergenic
TTGGGATGTCCAATTCCTTG+TGG 0.586251 1_1:+67989360 Msa0038500:CDS
TAATTAGGATCAACCATGAA+AGG 0.589196 1_1:+67988928 Msa0038500:intron
CTTATACGGTGTATATCCGG+TGG 0.593376 1_1:+67984876 Msa0038500:five_prime_UTR
AAAGTTGGCGCATTGATCAA+TGG 0.595867 1_1:+67988623 Msa0038500:CDS
GAAATTATTACTCACTACGT+GGG 0.598871 1_1:+67985610 Msa0038500:CDS
GCACTGAAGGAAATCTTCAT+GGG 0.600187 1_1:+67987461 Msa0038500:CDS
GTGTGTTGAACTGAAAATTG+TGG 0.602747 1_1:+67984849 Msa0038500:five_prime_UTR
TTCCAAGACACAATTCAAGC+TGG 0.603585 1_1:-67985046 None:intergenic
CACCTTATCTAAGGATATCG+AGG 0.606386 1_1:+67989413 Msa0038500:CDS
ACAATCACGGGTAGTCGAAG+TGG 0.609913 1_1:+67989456 Msa0038500:CDS
TGAAGGAGATATTTCACATG+TGG 0.616176 1_1:+67989689 Msa0038500:CDS
GATATCCTTAGATAAGGTGT+TGG 0.621341 1_1:-67989409 None:intergenic
TGGGGATACGTCACAACTGG+TGG 0.621459 1_1:+67987439 Msa0038500:CDS
TTTATGTGAAAATGTAGTGA+AGG 0.622323 1_1:-67987304 None:intergenic
CGAGTTAATAAAACACCACA+AGG 0.623786 1_1:-67989375 None:intergenic
TACAAAATATATACTATGTG+GGG 0.625492 1_1:+67984439 Msa0038500:five_prime_UTR
TGTTTCAATAATGAGCACTC+TGG 0.627994 1_1:+67985490 Msa0038500:CDS
GATTTGATGATAAATAAAGG+AGG 0.634031 1_1:+67984540 Msa0038500:five_prime_UTR
AAATTCAGTGAAGAAAAGCA+TGG 0.636659 1_1:+67985462 Msa0038500:CDS
ATTGAAACACTGGAGGAAAG+CGG 0.641254 1_1:+67988976 Msa0038500:CDS
TCAGTTCAACACACACCTAG+AGG 0.642039 1_1:-67984840 None:intergenic
ACATCCAATTAATAGACCAC+CGG 0.645920 1_1:-67984892 None:intergenic
AAATTATTACTCACTACGTG+GGG 0.654310 1_1:+67985611 Msa0038500:CDS
TGAATATAGAAACGATCGCG+AGG 0.658067 1_1:-67989003 None:intergenic
GTGTCTTGGAAGTTATACGG+TGG 0.673711 1_1:+67985058 Msa0038500:five_prime_UTR
TGAATAATGTGAATCTTGTG+AGG 0.688576 1_1:-67988561 None:intergenic
TATGGTAATTGAAACACTGG+AGG 0.691275 1_1:+67988969 Msa0038500:CDS
TGAAATTATTACTCACTACG+TGG 0.717164 1_1:+67985609 Msa0038500:CDS
TGCCATCACCAATTGCAATG+GGG 0.718457 1_1:+67985567 Msa0038500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAGAGAAAAAAAA+AGG + chr1_1:67984632-67984651 Msa0038500:five_prime_UTR 10.0%
!!! TTATGATCTTTTATTTTTTT+AGG + chr1_1:67985678-67985697 Msa0038500:intron 10.0%
!!! TATGATCTTTTATTTTTTTA+GGG + chr1_1:67985679-67985698 Msa0038500:intron 10.0%
!!! ATATTTTTTTTACGTTAAAA+TGG - chr1_1:67985972-67985991 None:intergenic 10.0%
!!! AATAAAACTTCTTTTTATTA+GGG - chr1_1:67986169-67986188 None:intergenic 10.0%
!!! AAATAAAACTTCTTTTTATT+AGG - chr1_1:67986170-67986189 None:intergenic 10.0%
!! TACTAAAAAAAAATTAATGA+GGG - chr1_1:67986576-67986595 None:intergenic 10.0%
!! CATTAAATATTTATCAAAAA+AGG - chr1_1:67987530-67987549 None:intergenic 10.0%
!!! GAAAATTTTCAAAAAATAAT+TGG - chr1_1:67987835-67987854 None:intergenic 10.0%
!!! ATATTTTGAAACATAAAAAA+AGG + chr1_1:67988281-67988300 Msa0038500:intron 10.0%
!!! AAATAAATTTTATCTATCAA+AGG + chr1_1:67988315-67988334 Msa0038500:intron 10.0%
!!! ATTTATACATAAAAATGTTT+TGG - chr1_1:67988452-67988471 None:intergenic 10.0%
!!! TTTGATTTGATGATAAATAA+AGG + chr1_1:67984537-67984556 Msa0038500:five_prime_UTR 15.0%
!! TATCATTTATGTTTCTTTAT+GGG - chr1_1:67984931-67984950 None:intergenic 15.0%
!! TTATCATTTATGTTTCTTTA+TGG - chr1_1:67984932-67984951 None:intergenic 15.0%
!! TACTTAATTGTATCAAAATA+CGG - chr1_1:67984981-67985000 None:intergenic 15.0%
!!! CTAACATTTTTCTATTTTAA+TGG + chr1_1:67985163-67985182 Msa0038500:five_prime_UTR 15.0%
!! AGTAATAATTTCATCTAATT+TGG - chr1_1:67985602-67985621 None:intergenic 15.0%
!!! TCAAAAAATATCACATTTTT+TGG + chr1_1:67985642-67985661 Msa0038500:CDS 15.0%
!!! CAAAAAATATCACATTTTTT+GGG + chr1_1:67985643-67985662 Msa0038500:CDS 15.0%
!!! CTTTTTATGATCTTTTTATT+AGG + chr1_1:67985704-67985723 Msa0038500:intron 15.0%
!!! TCTCTTTTATCTTTTTTTTA+AGG + chr1_1:67985779-67985798 Msa0038500:intron 15.0%
!!! CTCTTTTATCTTTTTTTTAA+GGG + chr1_1:67985780-67985799 Msa0038500:intron 15.0%
!!! TCTTTTATCTTTTTTTTAAG+GGG + chr1_1:67985781-67985800 Msa0038500:intron 15.0%
!!! AAGGTGTATATTTTTTTTAA+GGG - chr1_1:67985825-67985844 None:intergenic 15.0%
!!! AAAGGTGTATATTTTTTTTA+AGG - chr1_1:67985826-67985845 None:intergenic 15.0%
!!! TAATTTTTAAGTGAAAGAAT+TGG - chr1_1:67985929-67985948 None:intergenic 15.0%
!!! TGAAATTTCTTTTTAAATGT+TGG - chr1_1:67986020-67986039 None:intergenic 15.0%
!!! ATAAAACTTCTTTTTATTAG+GGG - chr1_1:67986168-67986187 None:intergenic 15.0%
!!! ATATAATTTTGATATAAGAG+AGG + chr1_1:67986385-67986404 Msa0038500:intron 15.0%
!! AGTAGTTTAAAAAAAAACAT+TGG + chr1_1:67986410-67986429 Msa0038500:intron 15.0%
!! CTACTAAAAAAAAATTAATG+AGG - chr1_1:67986577-67986596 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATA+TGG - chr1_1:67986933-67986952 None:intergenic 15.0%
!! ATATTATCCTTATTAACTAT+TGG + chr1_1:67986932-67986951 Msa0038500:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr1_1:67986956-67986975 Msa0038500:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr1_1:67987059-67987078 Msa0038500:intron 15.0%
!! ACATTGTTAATTATAAAAAG+AGG + chr1_1:67987134-67987153 Msa0038500:intron 15.0%
!! AAAAAATAACCAATATCTAT+AGG - chr1_1:67987176-67987195 None:intergenic 15.0%
!!! ATAGATATTGGTTATTTTTT+TGG + chr1_1:67987176-67987195 Msa0038500:intron 15.0%
!!! CATGATTGTATTTTTAATAT+CGG - chr1_1:67987739-67987758 None:intergenic 15.0%
!! TTGATACACAAATTAATAAA+TGG + chr1_1:67987962-67987981 Msa0038500:intron 15.0%
!!! ATATATATAACTCTAAAAGA+TGG - chr1_1:67988218-67988237 None:intergenic 15.0%
!!! GTGTTATTAATAATATGTTA+AGG - chr1_1:67988747-67988766 None:intergenic 15.0%
!! TCTACAAAATATATACTATG+TGG + chr1_1:67984437-67984456 Msa0038500:five_prime_UTR 20.0%
!! CTACAAAATATATACTATGT+GGG + chr1_1:67984438-67984457 Msa0038500:five_prime_UTR 20.0%
!! TACAAAATATATACTATGTG+GGG + chr1_1:67984439-67984458 Msa0038500:five_prime_UTR 20.0%
!! TTATCATCAAATCAAATAGT+CGG - chr1_1:67984533-67984552 None:intergenic 20.0%
!!! ATTTTTTTTTATATGCCTCT+AGG + chr1_1:67984825-67984844 Msa0038500:five_prime_UTR 20.0%
!!! AAAATTGTGGTTTTCTTATA+CGG + chr1_1:67984862-67984881 Msa0038500:five_prime_UTR 20.0%
!! TACAATTAAGTAGTATAAGT+TGG + chr1_1:67984989-67985008 Msa0038500:five_prime_UTR 20.0%
!! TTCATTGAATTTGATATCAA+AGG + chr1_1:67985241-67985260 Msa0038500:five_prime_UTR 20.0%
!! ACATATAAAATTCACTCATT+TGG + chr1_1:67985379-67985398 Msa0038500:five_prime_UTR 20.0%
!! GAAATTCAAAAGAATAACAA+TGG + chr1_1:67985532-67985551 Msa0038500:CDS 20.0%
!!! GATAAAAGAGAGTTATTTTA+AGG - chr1_1:67985770-67985789 None:intergenic 20.0%
!! AAAAATGAGTACAAATTGAA+AGG - chr1_1:67985844-67985863 None:intergenic 20.0%
!!! TTCAAATAGCCATATTTTAT+CGG + chr1_1:67986107-67986126 Msa0038500:intron 20.0%
!!! ATTTTTCTCTAATACAAAAG+TGG + chr1_1:67986350-67986369 Msa0038500:intron 20.0%
!!! TTTTTCTCTAATACAAAAGT+GGG + chr1_1:67986351-67986370 Msa0038500:intron 20.0%
!! GAAAAGTAAAATTAAGAAGA+GGG + chr1_1:67986450-67986469 Msa0038500:intron 20.0%
!!! TGTAATTCCATCTTTTATTA+AGG + chr1_1:67986603-67986622 Msa0038500:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr1_1:67986942-67986961 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr1_1:67987019-67987038 Msa0038500:intron 20.0%
!!! TAATCAAAGTTTTGATTAGT+GGG - chr1_1:67987271-67987290 None:intergenic 20.0%
!! AAAAATACAATCATGAAATG+AGG + chr1_1:67987744-67987763 Msa0038500:intron 20.0%
!! AAAATACAATCATGAAATGA+GGG + chr1_1:67987745-67987764 Msa0038500:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - chr1_1:67988027-67988046 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - chr1_1:67988028-67988047 None:intergenic 20.0%
!! TTTGTAATTATATGTACAGA+AGG + chr1_1:67988510-67988529 Msa0038500:intron 20.0%
!! TTGTAATTATATGTACAGAA+GGG + chr1_1:67988511-67988530 Msa0038500:intron 20.0%
!!! ATATTTAAATTGATGATAGC+TGG - chr1_1:67988701-67988720 None:intergenic 20.0%
!! GCTATCATCAATTTAAATAT+AGG + chr1_1:67988701-67988720 Msa0038500:CDS 20.0%
!! TCTGATAAACATGATTAATT+AGG + chr1_1:67988913-67988932 Msa0038500:intron 20.0%
!! TGATATCTATTTCATTGTAT+TGG + chr1_1:67989119-67989138 Msa0038500:intron 20.0%
!! TTGATCTTATAAAGCTATTT+GGG + chr1_1:67989266-67989285 Msa0038500:intron 20.0%
!! GATTTGATGATAAATAAAGG+AGG + chr1_1:67984540-67984559 Msa0038500:five_prime_UTR 25.0%
!! TTTTTATCCAATAAGAAGAG+AGG - chr1_1:67984616-67984635 None:intergenic 25.0%
! TTCCAAAAGTTGTCAAAAAA+TGG + chr1_1:67984692-67984711 Msa0038500:five_prime_UTR 25.0%
!!! AACCATTTTTTGACAACTTT+TGG - chr1_1:67984697-67984716 None:intergenic 25.0%
!! TGATAAATGAACAAACGTTT+TGG + chr1_1:67984946-67984965 Msa0038500:five_prime_UTR 25.0%
!!! TTTTCTATTTTAATGGTACG+TGG + chr1_1:67985170-67985189 Msa0038500:five_prime_UTR 25.0%
!!! TTTCTATTTTAATGGTACGT+GGG + chr1_1:67985171-67985190 Msa0038500:five_prime_UTR 25.0%
!! TATGTAACATTCTTTCGTTT+TGG - chr1_1:67985316-67985335 None:intergenic 25.0%
! ACACATAAATACAGAGAAAA+TGG + chr1_1:67985438-67985457 Msa0038500:exon 25.0%
! TTGTTAAAGCCGATAAAATA+TGG - chr1_1:67986119-67986138 None:intergenic 25.0%
! GGAAAAGTAAAATTAAGAAG+AGG + chr1_1:67986449-67986468 Msa0038500:intron 25.0%
! TTGATCACAAAATTTAGTGA+CGG + chr1_1:67986512-67986531 Msa0038500:intron 25.0%
!! ATTCCATCTTTTATTAAGGT+TGG + chr1_1:67986607-67986626 Msa0038500:intron 25.0%
! CAAAAAAAAAAAGTCAAAGG+AGG - chr1_1:67986634-67986653 None:intergenic 25.0%
! CCTCAAAAAAAAAAAGTCAA+AGG - chr1_1:67986637-67986656 None:intergenic 25.0%
!!! CCTTTGACTTTTTTTTTTTG+AGG + chr1_1:67986634-67986653 Msa0038500:intron 25.0%
!!! TTGACTTTTTTTTTTTGAGG+AGG + chr1_1:67986637-67986656 Msa0038500:intron 25.0%
! TGAACTAATATAACAGTCAA+AGG - chr1_1:67986667-67986686 None:intergenic 25.0%
!! CTTTTGCTTATATTAGTGAT+CGG - chr1_1:67986721-67986740 None:intergenic 25.0%
! ACGTATGTAGTCTTTATTAT+AGG - chr1_1:67986782-67986801 None:intergenic 25.0%
! ATAGTGTGTTGAGTATTAAT+TGG + chr1_1:67986981-67987000 Msa0038500:intron 25.0%
!!! TTGGTTATTTTTTTGGTAGA+AGG + chr1_1:67987183-67987202 Msa0038500:intron 25.0%
!! TTTTGGTAGAAGGAAAAAAA+AGG + chr1_1:67987193-67987212 Msa0038500:intron 25.0%
! TTGTATGTGATCTACATTAA+TGG + chr1_1:67987225-67987244 Msa0038500:intron 25.0%
!! TTAATGGTATTTGTTAAAGC+AGG + chr1_1:67987241-67987260 Msa0038500:intron 25.0%
!! TAATGGTATTTGTTAAAGCA+GGG + chr1_1:67987242-67987261 Msa0038500:intron 25.0%
!!! AATCAAAGTTTTGATTAGTG+GGG - chr1_1:67987270-67987289 None:intergenic 25.0%
!!! GTAATCAAAGTTTTGATTAG+TGG - chr1_1:67987272-67987291 None:intergenic 25.0%
! TTTATGTGAAAATGTAGTGA+AGG - chr1_1:67987307-67987326 None:intergenic 25.0%
!!! TTGATTGGTTTGCTAAATTA+TGG + chr1_1:67987395-67987414 Msa0038500:CDS 25.0%
!!! TGATTGGTTTGCTAAATTAT+GGG + chr1_1:67987396-67987415 Msa0038500:CDS 25.0%
! ATTTATCAAAAAAGGCCTAA+TGG - chr1_1:67987522-67987541 None:intergenic 25.0%
! AAATACAATCATGAAATGAG+GGG + chr1_1:67987746-67987765 Msa0038500:intron 25.0%
! TTTCTCATAATAAAGACAAG+AGG + chr1_1:67987851-67987870 Msa0038500:intron 25.0%
! TTCTCATAATAAAGACAAGA+GGG + chr1_1:67987852-67987871 Msa0038500:intron 25.0%
!! AAAGTTGGAGTATTTATTGA+AGG + chr1_1:67988081-67988100 Msa0038500:intron 25.0%
! GTATTTATTGAAGGTAAAGT+TGG + chr1_1:67988090-67988109 Msa0038500:intron 25.0%
!! ATCATGAACTAAAGTATTCT+TGG + chr1_1:67988364-67988383 Msa0038500:intron 25.0%
!! TCATGAACTAAAGTATTCTT+GGG + chr1_1:67988365-67988384 Msa0038500:intron 25.0%
!! AGCTATTGATAACATTGATA+TGG + chr1_1:67988951-67988970 Msa0038500:CDS 25.0%
! CTTGATCTTATAAAGCTATT+TGG + chr1_1:67989265-67989284 Msa0038500:intron 25.0%
!! GACATGCTTCAATTTTTATT+TGG + chr1_1:67989478-67989497 Msa0038500:CDS 25.0%
! ATTGTGAGTTTATTCGAAAA+TGG + chr1_1:67989655-67989674 Msa0038500:CDS 25.0%
!! AAATGGAATTTAGCTTATGA+AGG + chr1_1:67989672-67989691 Msa0038500:CDS 25.0%
! TTTGATAAACTCATCAACAA+AGG - chr1_1:67989751-67989770 None:intergenic 25.0%
TCTGAATAAAGAAACCGTAA+AGG + chr1_1:67984733-67984752 Msa0038500:five_prime_UTR 30.0%
TGGTTGTCAAAATACCTTTA+CGG - chr1_1:67984750-67984769 None:intergenic 30.0%
! GGAGTATTATTGTACATTGT+CGG - chr1_1:67984781-67984800 None:intergenic 30.0%
TTTCTTATACGGTGTATATC+CGG + chr1_1:67984873-67984892 Msa0038500:five_prime_UTR 30.0%
ATTGTGTCTTGGAAGTTATA+CGG + chr1_1:67985055-67985074 Msa0038500:five_prime_UTR 30.0%
!!! TCTTTCGTTTTGGTTTGATT+TGG - chr1_1:67985306-67985325 None:intergenic 30.0%
AAATTCAGTGAAGAAAAGCA+TGG + chr1_1:67985462-67985481 Msa0038500:CDS 30.0%
TGAAATTATTACTCACTACG+TGG + chr1_1:67985609-67985628 Msa0038500:CDS 30.0%
GAAATTATTACTCACTACGT+GGG + chr1_1:67985610-67985629 Msa0038500:CDS 30.0%
AAATTATTACTCACTACGTG+GGG + chr1_1:67985611-67985630 Msa0038500:CDS 30.0%
!!! AGAGTTATTTTAAGGTAGTG+AGG - chr1_1:67985762-67985781 None:intergenic 30.0%
TAATACAAAAGTGGGAAGAT+AGG + chr1_1:67986359-67986378 Msa0038500:intron 30.0%
ATTGGAAATGAGATACTACT+AGG + chr1_1:67986428-67986447 Msa0038500:intron 30.0%
! GTCACTAAATTTTGTGATCA+AGG - chr1_1:67986513-67986532 None:intergenic 30.0%
ACTAATATAACAGTCAAAGG+AGG - chr1_1:67986664-67986683 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr1_1:67986851-67986870 None:intergenic 30.0%
!! TTTCAAAATGAGTGTCGTTT+AGG + chr1_1:67986851-67986870 Msa0038500:intron 30.0%
TGTGTTGAGTATTAATTGGA+GGG + chr1_1:67986985-67987004 Msa0038500:intron 30.0%
!! AAGTGACACTCATTTTGAAA+CGG + chr1_1:67987085-67987104 Msa0038500:intron 30.0%
TTAGCATGACCTATAGATAT+TGG + chr1_1:67987164-67987183 Msa0038500:intron 30.0%
! CATTTTCACATAAACAATGC+TGG + chr1_1:67987313-67987332 Msa0038500:CDS 30.0%
TTGAAATATCTGTGCTTGAT+TGG + chr1_1:67987380-67987399 Msa0038500:CDS 30.0%
AAATTATGGGAGATAGAGAA+AGG + chr1_1:67987409-67987428 Msa0038500:CDS 30.0%
AGATAGAGAAAGGTGATTAT+TGG + chr1_1:67987419-67987438 Msa0038500:CDS 30.0%
GATAGAGAAAGGTGATTATT+GGG + chr1_1:67987420-67987439 Msa0038500:CDS 30.0%
ATAGAGAAAGGTGATTATTG+GGG + chr1_1:67987421-67987440 Msa0038500:CDS 30.0%
!! AATCTTCATGGGATTTTAAC+TGG + chr1_1:67987472-67987491 Msa0038500:CDS 30.0%
!!! ATCTTCATGGGATTTTAACT+GGG + chr1_1:67987473-67987492 Msa0038500:CDS 30.0%
GTGAACTTATCTATTCCATT+AGG + chr1_1:67987504-67987523 Msa0038500:intron 30.0%
TCGCGTAAAAAAAAAAAGAC+AGG - chr1_1:67987576-67987595 None:intergenic 30.0%
ACGAAGGGAGTAATAATTAT+AGG - chr1_1:67987917-67987936 None:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG + chr1_1:67988066-67988085 Msa0038500:intron 30.0%
!!! TGACATTCATTTTGAAACGT+AGG + chr1_1:67988148-67988167 Msa0038500:intron 30.0%
!!! GACATTCATTTTGAAACGTA+GGG + chr1_1:67988149-67988168 Msa0038500:intron 30.0%
AGGATGCTTATAATTGAAGA+CGG + chr1_1:67988335-67988354 Msa0038500:intron 30.0%
TGAATAATGTGAATCTTGTG+AGG - chr1_1:67988564-67988583 None:intergenic 30.0%
TCTATTGAACACACATTTAC+TGG + chr1_1:67988769-67988788 Msa0038500:intron 30.0%
TCTATTGGCGACAATTTAAA+TGG - chr1_1:67988798-67988817 None:intergenic 30.0%
TCCAACATACATTCTTCTAT+TGG - chr1_1:67988813-67988832 None:intergenic 30.0%
TAATTAGGATCAACCATGAA+AGG + chr1_1:67988928-67988947 Msa0038500:intron 30.0%
TGATATGGTAATTGAAACAC+TGG + chr1_1:67988966-67988985 Msa0038500:CDS 30.0%
CGTTTCTATATTCATTGTGA+TGG + chr1_1:67989012-67989031 Msa0038500:CDS 30.0%
! AGTGTTTGAAAAAGTGTAGT+GGG - chr1_1:67989221-67989240 None:intergenic 30.0%
TGAAATGGTTATACTTCCAA+TGG - chr1_1:67989328-67989347 None:intergenic 30.0%
! ATTGGAAGTATAACCATTTC+AGG + chr1_1:67989327-67989346 Msa0038500:CDS 30.0%
! ATTTCAGGCCATAAGTTTTT+GGG + chr1_1:67989342-67989361 Msa0038500:CDS 30.0%
AATAAAACACCACAAGGAAT+TGG - chr1_1:67989372-67989391 None:intergenic 30.0%
TTGGTATGCTTTGCAAAAAA+AGG + chr1_1:67989497-67989516 Msa0038500:CDS 30.0%
TGGTATGCTTTGCAAAAAAA+GGG + chr1_1:67989498-67989517 Msa0038500:CDS 30.0%
TTGCAAAAAAAGGGTTTACT+AGG + chr1_1:67989507-67989526 Msa0038500:CDS 30.0%
TGAATGCATGTTACCTAAAA+AGG + chr1_1:67989559-67989578 Msa0038500:CDS 30.0%
ATTCAACATTGTACAAATGC+CGG - chr1_1:67989598-67989617 None:intergenic 30.0%
CGAATAAACTCACAATCTAA+AGG - chr1_1:67989651-67989670 None:intergenic 30.0%
! TGTTGTGGTGTCAAACATTT+GGG - chr1_1:67984500-67984519 None:intergenic 35.0%
! TTGTTGTGGTGTCAAACATT+TGG - chr1_1:67984501-67984520 None:intergenic 35.0%
TGTTTGACACCACAACAAAT+AGG + chr1_1:67984503-67984522 Msa0038500:five_prime_UTR 35.0%
! CACTTTTCCTCTCTTCTTAT+TGG + chr1_1:67984606-67984625 Msa0038500:five_prime_UTR 35.0%
GTGTGTTGAACTGAAAATTG+TGG + chr1_1:67984849-67984868 Msa0038500:five_prime_UTR 35.0%
ATATCCGGTGGTCTATTAAT+TGG + chr1_1:67984888-67984907 Msa0038500:five_prime_UTR 35.0%
ACATCCAATTAATAGACCAC+CGG - chr1_1:67984895-67984914 None:intergenic 35.0%
! GTGGATTAAGTTGTAGCTTT+AGG + chr1_1:67985077-67985096 Msa0038500:five_prime_UTR 35.0%
!! TGTTAGATTGATTCGAGCAT+TGG - chr1_1:67985149-67985168 None:intergenic 35.0%
!! GTCTGAGTTTTTGAAAACTC+AGG - chr1_1:67985275-67985294 None:intergenic 35.0%
!!! TTCGTTTTGGTTTGATTTGG+TGG - chr1_1:67985303-67985322 None:intergenic 35.0%
!! TTTGGAGTTTTGCACTCTTT+TGG + chr1_1:67985397-67985416 Msa0038500:five_prime_UTR 35.0%
TGTTTCAATAATGAGCACTC+TGG + chr1_1:67985490-67985509 Msa0038500:CDS 35.0%
GGTCCAACCTTAATAAAAGA+TGG - chr1_1:67986613-67986632 None:intergenic 35.0%
TGCTTATATTAGTGATCGGA+GGG - chr1_1:67986717-67986736 None:intergenic 35.0%
TTGCTTATATTAGTGATCGG+AGG - chr1_1:67986718-67986737 None:intergenic 35.0%
GTGTGTTGAGTATTAATTGG+AGG + chr1_1:67986984-67987003 Msa0038500:intron 35.0%
AATTAACAATGTACACCCTC+CGG - chr1_1:67987126-67987145 None:intergenic 35.0%
AAACTTTGATTACGACGCAT+TGG + chr1_1:67987279-67987298 Msa0038500:CDS 35.0%
AATGCTGGAGATCCATTTAA+GGG + chr1_1:67987328-67987347 Msa0038500:CDS 35.0%
CCATAACTACTTCCCTTAAA+TGG - chr1_1:67987343-67987362 None:intergenic 35.0%
CCATTTAAGGGAAGTAGTTA+TGG + chr1_1:67987340-67987359 Msa0038500:CDS 35.0%
!!! GGATTTTAACTGGGTAAGTT+TGG + chr1_1:67987482-67987501 Msa0038500:intron 35.0%
!! TTCACAATGAGTGTCGTTTA+AGG + chr1_1:67987937-67987956 Msa0038500:intron 35.0%
AACTGATGAGATTACAGACT+CGG - chr1_1:67988413-67988432 None:intergenic 35.0%
AGAATGCAATGCATGAAAGT+TGG + chr1_1:67988608-67988627 Msa0038500:CDS 35.0%
GCCAATAGAAGAATGTATGT+TGG + chr1_1:67988809-67988828 Msa0038500:intron 35.0%
GTTATCAATAGCTCCTTTCA+TGG - chr1_1:67988944-67988963 None:intergenic 35.0%
TATGGTAATTGAAACACTGG+AGG + chr1_1:67988969-67988988 Msa0038500:CDS 35.0%
TTACTCACCTGTTCAAGAAA+TGG - chr1_1:67989060-67989079 None:intergenic 35.0%
! GAGTGTTTGAAAAAGTGTAG+TGG - chr1_1:67989222-67989241 None:intergenic 35.0%
AGCTATTTGGGTGATCTAAT+AGG + chr1_1:67989278-67989297 Msa0038500:intron 35.0%
ATTACCTTCAAGAAGTCCAT+TGG + chr1_1:67989309-67989328 Msa0038500:CDS 35.0%
CAAAAACTTATGGCCTGAAA+TGG - chr1_1:67989343-67989362 None:intergenic 35.0%
! CATTTCAGGCCATAAGTTTT+TGG + chr1_1:67989341-67989360 Msa0038500:CDS 35.0%
TTGGACATCCCAAAAACTTA+TGG - chr1_1:67989353-67989372 None:intergenic 35.0%
CGAGTTAATAAAACACCACA+AGG - chr1_1:67989378-67989397 None:intergenic 35.0%
GATATCCTTAGATAAGGTGT+TGG - chr1_1:67989412-67989431 None:intergenic 35.0%
TGAAGGAGATATTTCACATG+TGG + chr1_1:67989689-67989708 Msa0038500:CDS 35.0%
GCACGTTACTATTCAAATGT+TGG + chr1_1:67989722-67989741 Msa0038500:CDS 35.0%
GTACATTGTCGGACAACAAT+TGG - chr1_1:67984770-67984789 None:intergenic 40.0%
TTCCAAGACACAATTCAAGC+TGG - chr1_1:67985049-67985068 None:intergenic 40.0%
!! TTGATTCGAGCATTGGCAAA+TGG - chr1_1:67985142-67985161 None:intergenic 40.0%
!! TTGGTTTGATTTGGTGGTGT+TGG - chr1_1:67985297-67985316 None:intergenic 40.0%
TTGCCATCACCAATTGCAAT+GGG + chr1_1:67985566-67985585 Msa0038500:CDS 40.0%
GGAATCCAATCATCTCTTAG+AGG - chr1_1:67985908-67985927 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr1_1:67987089-67987108 None:intergenic 40.0%
!!! TGACACTCATTTTGAAACGG+AGG + chr1_1:67987088-67987107 Msa0038500:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr1_1:67987089-67987108 Msa0038500:intron 40.0%
CAATGCTGGAGATCCATTTA+AGG + chr1_1:67987327-67987346 Msa0038500:CDS 40.0%
GCACTGAAGGAAATCTTCAT+GGG + chr1_1:67987461-67987480 Msa0038500:CDS 40.0%
GACACTCATTGTGAAACGAA+GGG - chr1_1:67987932-67987951 None:intergenic 40.0%
AGAAGGGAAAAACTACCAGA+TGG + chr1_1:67988527-67988546 Msa0038500:intron 40.0%
GAAGGGAAAAACTACCAGAT+GGG + chr1_1:67988528-67988547 Msa0038500:intron 40.0%
GAGGTATACAAAATCCCATC+TGG - chr1_1:67988545-67988564 None:intergenic 40.0%
! AAAGTTGGCGCATTGATCAA+TGG + chr1_1:67988623-67988642 Msa0038500:CDS 40.0%
GACTCTACTTCTTGCTCATA+AGG + chr1_1:67988670-67988689 Msa0038500:CDS 40.0%
ATTGAAACACTGGAGGAAAG+CGG + chr1_1:67988976-67988995 Msa0038500:CDS 40.0%
TGAATATAGAAACGATCGCG+AGG - chr1_1:67989006-67989025 None:intergenic 40.0%
!! CATTGTGATGGAGCTTTGTT+CGG + chr1_1:67989024-67989043 Msa0038500:CDS 40.0%
AGTGGCTATGCTAACTTTCA+TGG - chr1_1:67989196-67989215 None:intergenic 40.0%
GACTTCTTGAAGGTAATCCT+TGG - chr1_1:67989306-67989325 None:intergenic 40.0%
! ACTTCCAATGGACTTCTTGA+AGG - chr1_1:67989316-67989335 None:intergenic 40.0%
ACACACCAACACCTTATCTA+AGG + chr1_1:67989404-67989423 Msa0038500:CDS 40.0%
CACCTTATCTAAGGATATCG+AGG + chr1_1:67989413-67989432 Msa0038500:CDS 40.0%
CACCTCGATATCCTTAGATA+AGG - chr1_1:67989418-67989437 None:intergenic 40.0%
ATATCGAGGTGATTGCTTCT+AGG + chr1_1:67989427-67989446 Msa0038500:CDS 40.0%
TATCGAGGTGATTGCTTCTA+GGG + chr1_1:67989428-67989447 Msa0038500:CDS 40.0%
! CATCGCGAAGTTTCCTTTTT+AGG - chr1_1:67989575-67989594 None:intergenic 40.0%
! ATTTTGTCTGCAAGGCACAA+AGG - chr1_1:67989789-67989808 None:intergenic 40.0%
TTGTGCCTTGCAGACAAAAT+TGG + chr1_1:67989789-67989808 Msa0038500:CDS 40.0%
! GTCGGTCATCCTATTTGTTG+TGG - chr1_1:67984515-67984534 None:intergenic 45.0%
TCAGTTCAACACACACCTAG+AGG - chr1_1:67984843-67984862 None:intergenic 45.0%
CTTATACGGTGTATATCCGG+TGG + chr1_1:67984876-67984895 Msa0038500:five_prime_UTR 45.0%
TGCCAGCTTGAATTGTGTCT+TGG + chr1_1:67985044-67985063 Msa0038500:five_prime_UTR 45.0%
GTGTCTTGGAAGTTATACGG+TGG + chr1_1:67985058-67985077 Msa0038500:five_prime_UTR 45.0%
! GCACTCTGGAGAAGAAGATA+AGG + chr1_1:67985504-67985523 Msa0038500:CDS 45.0%
!! CATTGCAATTGGTGATGGCA+AGG - chr1_1:67985567-67985586 None:intergenic 45.0%
CTTGCCATCACCAATTGCAA+TGG + chr1_1:67985565-67985584 Msa0038500:CDS 45.0%
TGCCATCACCAATTGCAATG+GGG + chr1_1:67985567-67985586 Msa0038500:CDS 45.0%
CCAATCATCTCTTAGAGGAG+AGG - chr1_1:67985903-67985922 None:intergenic 45.0%
! CCTCTCCTCTAAGAGATGAT+TGG + chr1_1:67985900-67985919 Msa0038500:intron 45.0%
TAATCTCCTCCATCGAGAGA+AGG - chr1_1:67986328-67986347 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr1_1:67986848-67986867 None:intergenic 45.0%
TATTGGGGATACGTCACAAC+TGG + chr1_1:67987436-67987455 Msa0038500:CDS 45.0%
! GGCACTGAAGGAAATCTTCA+TGG + chr1_1:67987460-67987479 Msa0038500:CDS 45.0%
CGACACTCATTGTGAAACGA+AGG - chr1_1:67987933-67987952 None:intergenic 45.0%
GATGAGATTACAGACTCGGA+AGG - chr1_1:67988409-67988428 None:intergenic 45.0%
! GATGCTGCCATTTCTTGAAC+AGG + chr1_1:67989050-67989069 Msa0038500:CDS 45.0%
!! GAAAAAGTGTAGTGGGCTAG+TGG - chr1_1:67989214-67989233 None:intergenic 45.0%
TTGGGATGTCCAATTCCTTG+TGG + chr1_1:67989360-67989379 Msa0038500:CDS 45.0%
! TTCTAGGGATGCCACAATCA+CGG + chr1_1:67989443-67989462 Msa0038500:CDS 45.0%
AAAAGGAAACTTCGCGATGC+CGG + chr1_1:67989576-67989595 Msa0038500:CDS 45.0%
! CAGCACCAATTTTGTCTGCA+AGG - chr1_1:67989797-67989816 None:intergenic 45.0%
!! AAAGAAATAAAATATATATT+AGG - chr1_1:67984802-67984821 None:intergenic 5.0%
TCAAGCTGGCACACATTTCG+AGG - chr1_1:67985035-67985054 None:intergenic 50.0%
!! CGAGCATTGGCAAATGGCAA+TGG - chr1_1:67985136-67985155 None:intergenic 50.0%
CTCCCCATTGCAATTGGTGA+TGG - chr1_1:67985572-67985591 None:intergenic 50.0%
ACGTGTCTCCCCATTGCAAT+TGG - chr1_1:67985578-67985597 None:intergenic 50.0%
!! ACGGAGGGAGTATTAGTGAC+CGG + chr1_1:67987104-67987123 Msa0038500:intron 50.0%
!! AGGGAGTATTAGTGACCGGA+GGG + chr1_1:67987108-67987127 Msa0038500:intron 50.0%
GGGTGATCTAATAGGCTCCA+AGG + chr1_1:67989286-67989305 Msa0038500:intron 50.0%
TCTAGGGATGCCACAATCAC+GGG + chr1_1:67989444-67989463 Msa0038500:CDS 50.0%
ACTTCGACTACCCGTGATTG+TGG - chr1_1:67989457-67989476 None:intergenic 50.0%
ACAATCACGGGTAGTCGAAG+TGG + chr1_1:67989456-67989475 Msa0038500:CDS 50.0%
TCTCCGTGTCCTTCTCTCGA+TGG + chr1_1:67986316-67986335 Msa0038500:intron 55.0%
CCTCCATCGAGAGAAGGACA+CGG - chr1_1:67986322-67986341 None:intergenic 55.0%
!! GAGGGAGTATTAGTGACCGG+AGG + chr1_1:67987107-67987126 Msa0038500:intron 55.0%
TGGGGATACGTCACAACTGG+TGG + chr1_1:67987439-67987458 Msa0038500:CDS 55.0%
! GTCACAACTGGTGGCACTGA+AGG + chr1_1:67987448-67987467 Msa0038500:CDS 55.0%
CCGTGTCCTTCTCTCGATGG+AGG + chr1_1:67986319-67986338 Msa0038500:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67984386 67989845 67984386 ID=Msa0038500;Name=Msa0038500
chr1_1 mRNA 67984386 67989845 67984386 ID=Msa0038500-mRNA-1;Parent=Msa0038500;Name=Msa0038500-mRNA-1;_AED=0.16;_eAED=0.16;_QI=1071|1|0.8|1|1|1|5|0|438
chr1_1 exon 67984386 67985664 67984386 ID=Msa0038500-mRNA-1:exon:22097;Parent=Msa0038500-mRNA-1
chr1_1 exon 67987263 67987494 67987263 ID=Msa0038500-mRNA-1:exon:22098;Parent=Msa0038500-mRNA-1
chr1_1 exon 67988529 67988722 67988529 ID=Msa0038500-mRNA-1:exon:22099;Parent=Msa0038500-mRNA-1
chr1_1 exon 67988935 67989071 67988935 ID=Msa0038500-mRNA-1:exon:22100;Parent=Msa0038500-mRNA-1
chr1_1 exon 67989300 67989845 67989300 ID=Msa0038500-mRNA-1:exon:22101;Parent=Msa0038500-mRNA-1
chr1_1 five_prime_UTR 67984386 67985456 67984386 ID=Msa0038500-mRNA-1:five_prime_utr;Parent=Msa0038500-mRNA-1
chr1_1 CDS 67985457 67985664 67985457 ID=Msa0038500-mRNA-1:cds;Parent=Msa0038500-mRNA-1
chr1_1 CDS 67987263 67987494 67987263 ID=Msa0038500-mRNA-1:cds;Parent=Msa0038500-mRNA-1
chr1_1 CDS 67988529 67988722 67988529 ID=Msa0038500-mRNA-1:cds;Parent=Msa0038500-mRNA-1
chr1_1 CDS 67988935 67989071 67988935 ID=Msa0038500-mRNA-1:cds;Parent=Msa0038500-mRNA-1
chr1_1 CDS 67989300 67989845 67989300 ID=Msa0038500-mRNA-1:cds;Parent=Msa0038500-mRNA-1
Gene Sequence

>Msa0038500

ATGGAAAATTCAGTGAAGAAAAGCATGGAACTATGTTTCAATAATGAGCACTCTGGAGAAGAAGATAAGGATAGAGAAATTCAAAAGAATAACAATGGAGATATGTGCCTTGCCATCACCAATTGCAATGGGGAGACACGTGCCAAATTAGATGAAATTATTACTCACTACGTGGGGACACTAAATCAAAAAATATCACATTTTTTGGGGTACCCCACTAATCAAAACTTTGATTACGACGCATTGGCACCTTCACTACATTTTCACATAAACAATGCTGGAGATCCATTTAAGGGAAGTAGTTATGGTATAAATTCAACAGATTTTGAAATATCTGTGCTTGATTGGTTTGCTAAATTATGGGAGATAGAGAAAGGTGATTATTGGGGATACGTCACAACTGGTGGCACTGAAGGAAATCTTCATGGGATTTTAACTGGAAGGGAAAAACTACCAGATGGGATTTTGTATACCTCACAAGATTCACATTATTCAATATTCAAGATTGCAAGAATGTATAGAATGCAATGCATGAAAGTTGGCGCATTGATCAATGGTGAGATTGATTGTGCTGATCTAAAGACTCTACTTCTTGCTCATAAGGACAAGCCAGCTATCATCAATTTAAATATAGGATCAACCATGAAAGGAGCTATTGATAACATTGATATGGTAATTGAAACACTGGAGGAAAGCGGTTTTCCTCGCGATCGTTTCTATATTCATTGTGATGGAGCTTTGTTCGGAATGATGCTGCCATTTCTTGAACAGGCTCCAAGGATTACCTTCAAGAAGTCCATTGGAAGTATAACCATTTCAGGCCATAAGTTTTTGGGATGTCCAATTCCTTGTGGTGTTTTATTAACTCGCTTAGAACACACCAACACCTTATCTAAGGATATCGAGGTGATTGCTTCTAGGGATGCCACAATCACGGGTAGTCGAAGTGGACATGCTTCAATTTTTATTTGGTATGCTTTGCAAAAAAAGGGTTTACTAGGACTTGAGAATGAAGTGCATAAGTGCATAATGAATGCATGTTACCTAAAAAGGAAACTTCGCGATGCCGGCATTTGTACAATGTTGAATGAATTTAGCAATACAGTTGTTTTTGAGAAGCCTTTAGATTGTGAGTTTATTCGAAAATGGAATTTAGCTTATGAAGGAGATATTTCACATGTGGTAGTGATGCAGCACGTTACTATTCAAATGTTGGACTCCTTTGTTGATGAGTTTATCAAAACAAGATTGAGAAAGCCTTTGTGCCTTGCAGACAAAATTGGTGCTGAAAATTGTGCCTGTATACTGCATATTTGA
Protein sequence

>Msa0038500

MENSVKKSMELCFNNEHSGEEDKDREIQKNNNGDMCLAITNCNGETRAKLDEIITHYVGTLNQKISHFLGYPTNQNFDYDALAPSLHFHINNAGDPFKGSSYGINSTDFEISVLDWFAKLWEIEKGDYWGYVTTGGTEGNLHGILTGREKLPDGILYTSQDSHYSIFKIARMYRMQCMKVGALINGEIDCADLKTLLLAHKDKPAIINLNIGSTMKGAIDNIDMVIETLEESGFPRDRFYIHCDGALFGMMLPFLEQAPRITFKKSIGSITISGHKFLGCPIPCGVLLTRLEHTNTLSKDIEVIASRDATITGSRSGHASIFIWYALQKKGLLGLENEVHKCIMNACYLKRKLRDAGICTMLNEFSNTVVFEKPLDCEFIRKWNLAYEGDISHVVVMQHVTIQMLDSFVDEFIKTRLRKPLCLADKIGAENCACILHI*