AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0132660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132660 MtrunA17_Chr1g0202071 94.038 369 22 0 70 438 37 405 0.0 735
Msa0132660 MtrunA17_Chr1g0202041 76.991 452 89 4 1 437 59 510 0.0 728
Msa0132660 MtrunA17_Chr4g0039151 66.357 431 138 1 14 437 34 464 0.0 609
Msa0132660 MtrunA17_Chr1g0202091 62.061 456 154 2 1 437 1 456 0.0 599
Msa0132660 MtrunA17_Chr2g0278631 55.889 433 178 2 18 437 53 485 0.0 521
Msa0132660 MtrunA17_Chr1g0202061 69.940 336 94 1 109 437 3 338 0.0 508
Msa0132660 MtrunA17_Chr4g0039161 75.472 159 39 0 109 267 3 161 1.59e-89 269
Msa0132660 MtrunA17_Chr4g0039171 63.542 192 61 2 254 437 16 206 3.59e-84 257
Msa0132660 MtrunA17_Chr6g0479491 66.429 140 47 0 172 311 1 140 5.12e-69 215
Msa0132660 MtrunA17_Chr1g0202081 82.857 70 6 1 1 70 55 118 2.48e-30 115
Msa0132660 MtrunA17_Chr2g0278611 50.000 106 46 1 334 432 7 112 9.24e-28 107
Msa0132660 MtrunA17_Chr6g0479481 50.000 84 35 1 361 437 1 84 5.48e-21 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0132660 AT1G43710.1 59.500 400 156 1 44 437 82 481 0.0 528

Find 119 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAATAATTTCATCTAATT+TGG 0.138549 1_3:+63881476 None:intergenic
TTCATTGAATTTGATATAAA+AGG 0.176358 1_3:-63881834 Msa0132660:five_prime_UTR
TTATCATTTATGTTTCTTTA+TGG 0.196344 1_3:+63882148 None:intergenic
CAATGCTGGAGATCCATTTA+AGG 0.203982 1_3:-63879051 Msa0132660:CDS
TGAATGCATGTTACCTAAAA+AGG 0.205457 1_3:-63876610 Msa0132660:CDS
GATAGAGAAAGGTGATTATT+GGG 0.215490 1_3:-63878958 Msa0132660:CDS
TTGATTGGTTTGCTAAATTA+TGG 0.217751 1_3:-63878983 Msa0132660:CDS
CCATAACTACTTCCCTTAAA+TGG 0.221731 1_3:+63879038 None:intergenic
AGATAGAGAAAGGTGATTAT+TGG 0.250760 1_3:-63878959 Msa0132660:CDS
GTGGATTAAGTTGTAACTTT+AGG 0.279244 1_3:-63882000 Msa0132660:five_prime_UTR
TATCATTTATGTTTCTTTAT+GGG 0.285434 1_3:+63882149 None:intergenic
ACACATAAATACAGAGAAAA+TGG 0.290951 1_3:-63881637 Msa0132660:exon
ATTGTGAGTTTATTCGAAAA+TGG 0.297142 1_3:-63876514 Msa0132660:CDS
ACATATAAAATTCACTCATT+TGG 0.310985 1_3:-63881696 Msa0132660:five_prime_UTR
GTTATCAATAGCTCCTTTCA+TGG 0.318998 1_3:+63877228 None:intergenic
ATATCGAGGTGATTGCTTCT+AGG 0.321468 1_3:-63876742 Msa0132660:CDS
ATTGGAAGTATAACCATTTC+AGG 0.330888 1_3:-63876842 Msa0132660:CDS
TTTCATTTGATGATAAATAA+AGG 0.333555 1_3:-63882539 Msa0132660:five_prime_UTR
ATATCCGGTGGTCTATTAAT+TGG 0.342951 1_3:-63882189 Msa0132660:five_prime_UTR
TACAATTAAGTAGTATAAGT+TGG 0.361855 1_3:-63882088 Msa0132660:five_prime_UTR
TACAAAATAAAATATATATT+AGG 0.365991 1_3:+63882277 None:intergenic
TTGTTGTGGTGTCAAACATT+TGG 0.366013 1_3:+63882578 None:intergenic
TATGTAACATTCTTTCGTTT+TGG 0.370715 1_3:+63881762 None:intergenic
TGTTGTGGTGTCAAACATTT+GGG 0.371821 1_3:+63882579 None:intergenic
TGATAAATGAACAAATGTTT+TGG 0.374196 1_3:-63882131 Msa0132660:five_prime_UTR
TGGTTGTCAAAATACCTTTA+CGG 0.378248 1_3:+63882329 None:intergenic
TTGTGCCTTGCAGACAAAAT+TGG 0.383225 1_3:-63876380 Msa0132660:CDS
AATAAAACACCACAAGGAAT+TGG 0.385444 1_3:+63876800 None:intergenic
GCTATCATCAATTTAAATAT+AGG 0.387923 1_3:-63877468 Msa0132660:intron
CATTGTGATGGAGCTTTGTT+CGG 0.393038 1_3:-63877145 Msa0132660:CDS
TGTTTGACACCACAACAAAT+AGG 0.393359 1_3:-63882573 Msa0132660:five_prime_UTR
TTGAAATATCTGTGCTTGAT+TGG 0.396592 1_3:-63878998 Msa0132660:CDS
CGAATAAACTCACAATCTAA+AGG 0.397210 1_3:+63876521 None:intergenic
CCATTTAAGGGAAGTAGTTA+TGG 0.398775 1_3:-63879038 Msa0132660:CDS
ACACACCAACACCTTATCTA+AGG 0.402722 1_3:-63876765 Msa0132660:CDS
GACTCTACTTCTTGCTCATA+AGG 0.407807 1_3:-63877499 Msa0132660:CDS
TTACTCACCTGTTCAAGAAA+TGG 0.415812 1_3:+63877112 None:intergenic
ATATTTAAATTGATGATAGC+TGG 0.419466 1_3:+63877471 None:intergenic
TGTTAGATTGATTCGAGCAT+TGG 0.420041 1_3:+63881931 None:intergenic
ACTTCCAATGGACTTCTTGA+AGG 0.422174 1_3:+63876856 None:intergenic
TGATTGGTTTGCTAAATTAT+GGG 0.422539 1_3:-63878982 Msa0132660:CDS
GGCACTGAGGGAAATCTTCA+TGG 0.422923 1_3:-63878918 Msa0132660:CDS
AGCTATTGATAACATTGATA+TGG 0.427718 1_3:-63877218 Msa0132660:CDS
GTACATTGTCGGACAACAAT+TGG 0.429921 1_3:+63882309 None:intergenic
GGAGTATTATTGTACATTGT+CGG 0.431051 1_3:+63882298 None:intergenic
AAAAGGAAACTTCGCGATGC+CGG 0.437474 1_3:-63876593 Msa0132660:CDS
CGTTTCTATATTCATTGTGA+TGG 0.445360 1_3:-63877157 Msa0132660:CDS
TTGCCATCACCAATTGCAAT+GGG 0.455033 1_3:-63881509 Msa0132660:CDS
TTTCTTATACGGTGTATATC+CGG 0.458007 1_3:-63882204 Msa0132660:five_prime_UTR
AATGCTGGAGATCCATTTAA+GGG 0.464976 1_3:-63879050 Msa0132660:CDS
TACTTAATTGTATCAAAATA+CGG 0.467789 1_3:+63882099 None:intergenic
TTGGTTTGATTTGGTGGTGT+TGG 0.467968 1_3:+63881781 None:intergenic
GACTTCTTGAAGGTAATCCT+TGG 0.471834 1_3:+63876866 None:intergenic
TATCGAGGTGATTGCTTCTA+GGG 0.473060 1_3:-63876741 Msa0132660:CDS
ATTGTGTCTTGGAAGTTATA+CGG 0.474458 1_3:-63882022 Msa0132660:five_prime_UTR
TTGATTCGAGCATTGGCAAA+TGG 0.477288 1_3:+63881938 None:intergenic
AAATGGAATTTAGCTTATGA+AGG 0.484386 1_3:-63876497 Msa0132660:CDS
TATTGGGGATACGTCACAAC+TGG 0.484726 1_3:-63878942 Msa0132660:CDS
GATGCTGCCATTTCTTGAAC+AGG 0.490155 1_3:-63877119 Msa0132660:intron
TTCCAAGACACAATTCAATC+TGG 0.493954 1_3:+63882031 None:intergenic
CTACAAAATATATACTATGT+GGG 0.494687 1_3:-63882637 Msa0132660:five_prime_UTR
ATTACCTTCAAGAAGTCCAT+TGG 0.495782 1_3:-63876860 Msa0132660:CDS
GCACGTTACTATTCAAATGT+TGG 0.496865 1_3:-63876447 Msa0132660:CDS
GAATCAAATATGCAGTATAC+AGG 0.498645 1_3:+63876343 None:intergenic
TCAATCTGGCACACATTTCG+AGG 0.499015 1_3:+63882045 None:intergenic
GAGGTATACAAAATCCCATC+TGG 0.512731 1_3:+63877627 None:intergenic
CACCTCGATATCCTTAGATA+AGG 0.516375 1_3:+63876754 None:intergenic
ATTCAACATTGTACAAATGC+CGG 0.518161 1_3:+63876574 None:intergenic
ACGTGTCTCCCCATTGCAAT+TGG 0.522010 1_3:+63881500 None:intergenic
AAACTTTGATTACGACGCAT+TGG 0.522500 1_3:-63879099 Msa0132660:CDS
GTCGGTCATCCTATTTGTTG+TGG 0.526628 1_3:+63882564 None:intergenic
TGAAATGGTTATACTTCCAA+TGG 0.529728 1_3:+63876844 None:intergenic
TCTAGGGATGCCACAATCAC+GGG 0.530868 1_3:-63876725 Msa0132660:CDS
AGAATGCAATGCATGAAAGT+TGG 0.535151 1_3:-63877561 Msa0132660:CDS
TGCCAGATTGAATTGTGTCT+TGG 0.540136 1_3:-63882033 Msa0132660:five_prime_UTR
CATTGCAATTGGTGATGGCA+AGG 0.543746 1_3:+63881511 None:intergenic
TCTACAAAATATATACTATG+TGG 0.545654 1_3:-63882638 Msa0132660:five_prime_UTR
GTCACAACTGGTGGCACTGA+GGG 0.550349 1_3:-63878930 Msa0132660:CDS
TTCTAGGGATGCCACAATCA+CGG 0.551015 1_3:-63876726 Msa0132660:CDS
GCACTCTGGAGAAGAAGATA+AGG 0.554910 1_3:-63881571 Msa0132660:CDS
CGAGCATTGGCAAATGGCAA+TGG 0.557921 1_3:+63881944 None:intergenic
TGATATGGTAATTGAAACAC+TGG 0.562632 1_3:-63877203 Msa0132660:CDS
TTATCATCAAATGAAATAGT+CGG 0.565365 1_3:+63882546 None:intergenic
ACTTCGACTACCCGTGATTG+TGG 0.567833 1_3:+63876715 None:intergenic
ATAGAGAAAGGTGATTATTG+GGG 0.570905 1_3:-63878957 Msa0132660:CDS
AAATTATGGGAGATAGAGAA+AGG 0.572365 1_3:-63878969 Msa0132660:CDS
CTCCCCATTGCAATTGGTGA+TGG 0.573696 1_3:+63881506 None:intergenic
GAAATTCAAAAGAATAACAA+TGG 0.575231 1_3:-63881543 Msa0132660:CDS
GGGTGATCTAATAGGCTCCA+AGG 0.578170 1_3:-63876883 Msa0132660:intron
CTTGCCATCACCAATTGCAA+TGG 0.579438 1_3:-63881510 Msa0132660:CDS
TTTGATAAACTCATCAACAA+AGG 0.584207 1_3:+63876421 None:intergenic
TTGGGATGTCCAATTCCTTG+TGG 0.586251 1_3:-63876809 Msa0132660:CDS
TAATTAGGATCAACCATGAA+AGG 0.589196 1_3:-63877241 Msa0132660:intron
CTTATACGGTGTATATCCGG+TGG 0.593376 1_3:-63882201 Msa0132660:five_prime_UTR
AAAGTTGGCGCATTGATCAA+TGG 0.595867 1_3:-63877546 Msa0132660:CDS
GAAATTATTACTCACTACGT+GGG 0.598871 1_3:-63881465 Msa0132660:CDS
GCACTGAGGGAAATCTTCAT+GGG 0.602483 1_3:-63878917 Msa0132660:CDS
CACCTTATCTAAGGATATCG+AGG 0.606386 1_3:-63876756 Msa0132660:CDS
ACAATCACGGGTAGTCGAAG+TGG 0.609913 1_3:-63876713 Msa0132660:CDS
TGAAGGAGATATTTCACATG+TGG 0.616176 1_3:-63876480 Msa0132660:CDS
CATTTGATGATAAATAAAGG+AGG 0.616618 1_3:-63882536 Msa0132660:five_prime_UTR
GATATCCTTAGATAAGGTGT+TGG 0.621341 1_3:+63876760 None:intergenic
TGGGGATACGTCACAACTGG+TGG 0.621459 1_3:-63878939 Msa0132660:CDS
TTTATGTGAAAATGTAGTGA+AGG 0.622323 1_3:+63879074 None:intergenic
CGAGTTAATAAAACACCACA+AGG 0.623786 1_3:+63876794 None:intergenic
TACAAAATATATACTATGTG+GGG 0.625492 1_3:-63882636 Msa0132660:five_prime_UTR
TGTTTCAATAATGAGCACTC+TGG 0.627994 1_3:-63881585 Msa0132660:CDS
AAATTCAGTGAAGAAAAGCA+TGG 0.636659 1_3:-63881613 Msa0132660:CDS
ATTGAAACACTGGAGGAAAG+CGG 0.641254 1_3:-63877193 Msa0132660:CDS
ACATCCAATTAATAGACCAC+CGG 0.645920 1_3:+63882185 None:intergenic
TTAGTTCAACACACACCTAG+AGG 0.651232 1_3:+63882237 None:intergenic
AAATTATTACTCACTACGTG+GGG 0.654310 1_3:-63881464 Msa0132660:CDS
TGAATATAGAAACGATCGCG+AGG 0.658067 1_3:+63877166 None:intergenic
CGTCACAACTGGTGGCACTG+AGG 0.671317 1_3:-63878931 Msa0132660:CDS
GTGTCTTGGAAGTTATACGG+TGG 0.673711 1_3:-63882019 Msa0132660:five_prime_UTR
TGAATAATGTGAATCTTGTG+AGG 0.688576 1_3:+63877608 None:intergenic
TATGGTAATTGAAACACTGG+AGG 0.691275 1_3:-63877200 Msa0132660:CDS
TGAAATTATTACTCACTACG+TGG 0.717164 1_3:-63881466 Msa0132660:CDS
TGCCATCACCAATTGCAATG+GGG 0.718457 1_3:-63881508 Msa0132660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAATTTAATATT+TGG + chr1_3:63878438-63878457 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr1_3:63880874-63880893 Msa0132660:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr1_3:63880875-63880894 Msa0132660:intron 0.0%
!! AAATAATAGAGAAAAAAAAA+AGG - chr1_3:63876580-63876599 Msa0132660:CDS 10.0%
!!! TTATGATCTTTTATTTTTTT+AGG - chr1_3:63877626-63877645 Msa0132660:CDS 10.0%
!!! TATGATCTTTTATTTTTTTA+GGG - chr1_3:63877627-63877646 Msa0132660:CDS 10.0%
!!! AAAAGTGTATATTTTTTTAA+GGG + chr1_3:63877773-63877792 None:intergenic 10.0%
!!! AATAAAACTTCTTTTTATTA+GGG + chr1_3:63878115-63878134 None:intergenic 10.0%
!!! AAATAAAACTTCTTTTTATT+AGG + chr1_3:63878116-63878135 None:intergenic 10.0%
!! ATATTTGCATATTAAAAAAA+TGG - chr1_3:63878857-63878876 Msa0132660:intron 10.0%
!!! TATTTTGAAACAAATTTTTT+TGG - chr1_3:63879704-63879723 Msa0132660:intron 10.0%
!! CATTAAATATTTATCAAAAA+AGG + chr1_3:63880175-63880194 None:intergenic 10.0%
!!! GAAAATTTTCAAAAAATAAT+TGG + chr1_3:63880480-63880499 None:intergenic 10.0%
!! TATATATATATACACATATA+GGG + chr1_3:63881084-63881103 None:intergenic 10.0%
!! ATATATATATATACACATAT+AGG + chr1_3:63881085-63881104 None:intergenic 10.0%
!!! ATATTTTGAAACATAAAAAA+AGG - chr1_3:63881135-63881154 Msa0132660:intron 10.0%
!!! AAATAAATTTTATCTATCAA+AGG - chr1_3:63881169-63881188 Msa0132660:intron 10.0%
!!! ATTTATACATAAAAATGTTT+TGG + chr1_3:63881306-63881325 None:intergenic 10.0%
!!! TTTCATTTGATGATAAATAA+AGG - chr1_3:63876484-63876503 Msa0132660:CDS 15.0%
!! TATCATTTATGTTTCTTTAT+GGG + chr1_3:63876877-63876896 None:intergenic 15.0%
!! TTATCATTTATGTTTCTTTA+TGG + chr1_3:63876878-63876897 None:intergenic 15.0%
!! TACTTAATTGTATCAAAATA+CGG + chr1_3:63876927-63876946 None:intergenic 15.0%
!!! CTAACATTTTTCTATTTTAA+TGG - chr1_3:63877109-63877128 Msa0132660:intron 15.0%
!! TTCATTGAATTTGATATAAA+AGG - chr1_3:63877189-63877208 Msa0132660:CDS 15.0%
!! AGTAATAATTTCATCTAATT+TGG + chr1_3:63877550-63877569 None:intergenic 15.0%
!!! TCAAAAAATATCACATTTTT+TGG - chr1_3:63877590-63877609 Msa0132660:CDS 15.0%
!!! CAAAAAATATCACATTTTTT+GGG - chr1_3:63877591-63877610 Msa0132660:CDS 15.0%
!!! CTTTTTATGATCTTTTTATT+AGG - chr1_3:63877652-63877671 Msa0132660:intron 15.0%
!!! TCTCTTTTATCTTTTTTTTA+AGG - chr1_3:63877727-63877746 Msa0132660:intron 15.0%
!!! CTCTTTTATCTTTTTTTTAA+GGG - chr1_3:63877728-63877747 Msa0132660:intron 15.0%
!!! TCTTTTATCTTTTTTTTAAG+GGG - chr1_3:63877729-63877748 Msa0132660:intron 15.0%
!!! GAAAAGTGTATATTTTTTTA+AGG + chr1_3:63877774-63877793 None:intergenic 15.0%
!!! TAATTTTTAAGTGAAAGAAT+TGG + chr1_3:63877876-63877895 None:intergenic 15.0%
!!! TGAAATTTCTTTTTAAATGT+TGG + chr1_3:63877966-63877985 None:intergenic 15.0%
!!! ATAAAACTTCTTTTTATTAG+GGG + chr1_3:63878114-63878133 None:intergenic 15.0%
!!! ATATAATTTTGATATAAGAG+AGG - chr1_3:63879029-63879048 Msa0132660:CDS 15.0%
!! ACTACAAAAAAAATTAATGA+GGG + chr1_3:63879219-63879238 None:intergenic 15.0%
!! TACTACAAAAAAAATTAATG+AGG + chr1_3:63879220-63879239 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATA+TGG + chr1_3:63879578-63879597 None:intergenic 15.0%
!! ATATTATCCTTATTAACTAT+TGG - chr1_3:63879577-63879596 Msa0132660:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr1_3:63879601-63879620 Msa0132660:intron 15.0%
!! ACATTGTTAATTATAAAAAG+AGG - chr1_3:63879779-63879798 Msa0132660:intron 15.0%
!! AAAAAATAACCAATATCTAT+AGG + chr1_3:63879821-63879840 None:intergenic 15.0%
!!! ATAGATATTGGTTATTTTTT+TGG - chr1_3:63879821-63879840 Msa0132660:intron 15.0%
!!! CATGATTGTATTTTTAATAT+CGG + chr1_3:63880384-63880403 None:intergenic 15.0%
!! TTGATACACAAATTAATAAA+TGG - chr1_3:63880607-63880626 Msa0132660:intron 15.0%
!!! ATATATATAACTCTAAAAGA+TGG + chr1_3:63880863-63880882 None:intergenic 15.0%
!!! GTGTTATTAATAATATGTTA+AGG + chr1_3:63881601-63881620 None:intergenic 15.0%
!! TCTACAAAATATATACTATG+TGG - chr1_3:63876385-63876404 Msa0132660:CDS 20.0%
!! CTACAAAATATATACTATGT+GGG - chr1_3:63876386-63876405 Msa0132660:CDS 20.0%
!! TACAAAATATATACTATGTG+GGG - chr1_3:63876387-63876406 Msa0132660:CDS 20.0%
!! TTATCATCAAATGAAATAGT+CGG + chr1_3:63876480-63876499 None:intergenic 20.0%
!!! ATTTTTTTTTATATGCCTCT+AGG - chr1_3:63876771-63876790 Msa0132660:CDS 20.0%
!!! AAAATTGTGGTTTTCTTATA+CGG - chr1_3:63876808-63876827 Msa0132660:CDS 20.0%
!!! TGATAAATGAACAAATGTTT+TGG - chr1_3:63876892-63876911 Msa0132660:intron 20.0%
!! TACAATTAAGTAGTATAAGT+TGG - chr1_3:63876935-63876954 Msa0132660:intron 20.0%
!! ACATATAAAATTCACTCATT+TGG - chr1_3:63877327-63877346 Msa0132660:intron 20.0%
!! GAAATTCAAAAGAATAACAA+TGG - chr1_3:63877480-63877499 Msa0132660:CDS 20.0%
!!! GATAAAAGAGAGTTATTTTA+AGG + chr1_3:63877718-63877737 None:intergenic 20.0%
!!! TTCAAATAGCCATATTTTAT+CGG - chr1_3:63878053-63878072 Msa0132660:intron 20.0%
!! ACATTTCCTTTATCTTTATT+TGG - chr1_3:63878593-63878612 Msa0132660:intron 20.0%
!!! TTTTCCTTTCTAAGAAATTA+GGG - chr1_3:63878657-63878676 Msa0132660:intron 20.0%
!!! TTTTTGAAATTTTTCCGTAT+CGG - chr1_3:63878949-63878968 Msa0132660:CDS 20.0%
!! GAGTAGTTTAAAAAAAACAT+TGG - chr1_3:63879053-63879072 Msa0132660:CDS 20.0%
!! GAAAAGTAAAATTAAGAAGA+GGG - chr1_3:63879093-63879112 Msa0132660:CDS 20.0%
!!! TGTAATTCCATCTTTTATTA+AGG - chr1_3:63879247-63879266 Msa0132660:intron 20.0%
!! AAAAAAAAAAAAGTCAAAGG+AGG + chr1_3:63879278-63879297 None:intergenic 20.0%
!! CTCAAAAAAAAAAAAGTCAA+AGG + chr1_3:63879281-63879300 None:intergenic 20.0%
!!! CTTTGACTTTTTTTTTTTTG+AGG - chr1_3:63879279-63879298 Msa0132660:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr1_3:63879587-63879606 None:intergenic 20.0%
!!! TAATCAAAGTTTTGATTAGT+GGG + chr1_3:63879916-63879935 None:intergenic 20.0%
!! AAAAATACAATCATGAAATG+AGG - chr1_3:63880389-63880408 Msa0132660:intron 20.0%
!! AAAATACAATCATGAAATGA+GGG - chr1_3:63880390-63880409 Msa0132660:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG + chr1_3:63880672-63880691 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG + chr1_3:63880673-63880692 None:intergenic 20.0%
!! TTTGTAATTATATGTACAGA+AGG - chr1_3:63881364-63881383 Msa0132660:intron 20.0%
!! TTGTAATTATATGTACAGAA+GGG - chr1_3:63881365-63881384 Msa0132660:intron 20.0%
!!! ATATTTAAATTGATGATAGC+TGG + chr1_3:63881555-63881574 None:intergenic 20.0%
!! GCTATCATCAATTTAAATAT+AGG - chr1_3:63881555-63881574 Msa0132660:CDS 20.0%
!! TCTGATAAACATGATTAATT+AGG - chr1_3:63881767-63881786 Msa0132660:five_prime_UTR 20.0%
!! TGATATCTATTTCATTGTAT+TGG - chr1_3:63881973-63881992 Msa0132660:five_prime_UTR 20.0%
!! TTGATCTTATAAAGCTATTT+GGG - chr1_3:63882120-63882139 Msa0132660:five_prime_UTR 20.0%
!! CATTTGATGATAAATAAAGG+AGG - chr1_3:63876487-63876506 Msa0132660:CDS 25.0%
! TCTGAATAAAAAAACCGTAA+AGG - chr1_3:63876680-63876699 Msa0132660:CDS 25.0%
!!! TTTTCTATTTTAATGGTACG+TGG - chr1_3:63877116-63877135 Msa0132660:intron 25.0%
!!! TTTCTATTTTAATGGTACGT+GGG - chr1_3:63877117-63877136 Msa0132660:intron 25.0%
!! TATGTAACATTCTTTCGTTT+TGG + chr1_3:63877264-63877283 None:intergenic 25.0%
! ACACATAAATACAGAGAAAA+TGG - chr1_3:63877386-63877405 Msa0132660:intron 25.0%
! TTGTTAAAGCCGATAAAATA+TGG + chr1_3:63878065-63878084 None:intergenic 25.0%
!! ATTTTTCTCTAATACAAACG+TGG - chr1_3:63878296-63878315 Msa0132660:intron 25.0%
!! TTTTTCTCTAATACAAACGT+GGG - chr1_3:63878297-63878316 Msa0132660:intron 25.0%
! TTTAATATTTGGATACTCTC+TGG + chr1_3:63878427-63878446 None:intergenic 25.0%
!!! CTTTTCCTTTCTAAGAAATT+AGG - chr1_3:63878656-63878675 Msa0132660:intron 25.0%
! TCAAAAATCAAGATACGATA+CGG + chr1_3:63878936-63878955 None:intergenic 25.0%
! GGAAAAGTAAAATTAAGAAG+AGG - chr1_3:63879092-63879111 Msa0132660:CDS 25.0%
! TTGATCACAAAATTTAGTGA+CGG - chr1_3:63879155-63879174 Msa0132660:intron 25.0%
!! ATTCCATCTTTTATTAAGGT+TGG - chr1_3:63879251-63879270 Msa0132660:intron 25.0%
!!! TGACTTTTTTTTTTTTGAGG+AGG - chr1_3:63879282-63879301 Msa0132660:intron 25.0%
! TGAACTAATATAACAGTCAA+AGG + chr1_3:63879312-63879331 None:intergenic 25.0%
!! CTTTTGCTTATATTAGTGAT+CGG + chr1_3:63879366-63879385 None:intergenic 25.0%
! ACGTATGTAGTCTTTATTAT+AGG + chr1_3:63879427-63879446 None:intergenic 25.0%
! ATAGTGTGTTGAGTATTAAT+TGG - chr1_3:63879626-63879645 Msa0132660:intron 25.0%
!!! AAGTGACACTTATTTTGAAA+TGG - chr1_3:63879730-63879749 Msa0132660:intron 25.0%
!!! TTGGTTATTTTTTTGGTAGA+AGG - chr1_3:63879828-63879847 Msa0132660:intron 25.0%
!! TTTTGGTAGAAGGAAAAAAA+AGG - chr1_3:63879838-63879857 Msa0132660:intron 25.0%
! TTGTATGTGATCTACATTAA+TGG - chr1_3:63879870-63879889 Msa0132660:intron 25.0%
!! TTAATGGTATTTGTTAAAGC+AGG - chr1_3:63879886-63879905 Msa0132660:intron 25.0%
!! TAATGGTATTTGTTAAAGCA+GGG - chr1_3:63879887-63879906 Msa0132660:intron 25.0%
!!! AATCAAAGTTTTGATTAGTG+GGG + chr1_3:63879915-63879934 None:intergenic 25.0%
!!! GTAATCAAAGTTTTGATTAG+TGG + chr1_3:63879917-63879936 None:intergenic 25.0%
! TTTATGTGAAAATGTAGTGA+AGG + chr1_3:63879952-63879971 None:intergenic 25.0%
!!! TTGATTGGTTTGCTAAATTA+TGG - chr1_3:63880040-63880059 Msa0132660:intron 25.0%
!!! TGATTGGTTTGCTAAATTAT+GGG - chr1_3:63880041-63880060 Msa0132660:intron 25.0%
! ATTTATCAAAAAAGGCCTAA+TGG + chr1_3:63880167-63880186 None:intergenic 25.0%
! AAATACAATCATGAAATGAG+GGG - chr1_3:63880391-63880410 Msa0132660:intron 25.0%
! TTTCTCATAATAAAGACAAG+AGG - chr1_3:63880496-63880515 Msa0132660:intron 25.0%
! TTCTCATAATAAAGACAAGA+GGG - chr1_3:63880497-63880516 Msa0132660:intron 25.0%
!! AAAGTTGGAGTATTTATTGA+AGG - chr1_3:63880726-63880745 Msa0132660:intron 25.0%
! GTATTTATTGAAGGTAAAGT+TGG - chr1_3:63880735-63880754 Msa0132660:intron 25.0%
!! ATCATGAACTAAAGTATTCT+TGG - chr1_3:63881218-63881237 Msa0132660:intron 25.0%
!! TCATGAACTAAAGTATTCTT+GGG - chr1_3:63881219-63881238 Msa0132660:intron 25.0%
!! AGCTATTGATAACATTGATA+TGG - chr1_3:63881805-63881824 Msa0132660:five_prime_UTR 25.0%
! CTTGATCTTATAAAGCTATT+TGG - chr1_3:63882119-63882138 Msa0132660:five_prime_UTR 25.0%
!! GACATGCTTCAATTTTTATT+TGG - chr1_3:63882332-63882351 Msa0132660:five_prime_UTR 25.0%
! ATTGTGAGTTTATTCGAAAA+TGG - chr1_3:63882509-63882528 Msa0132660:five_prime_UTR 25.0%
!! AAATGGAATTTAGCTTATGA+AGG - chr1_3:63882526-63882545 Msa0132660:five_prime_UTR 25.0%
! TTTGATAAACTCATCAACAA+AGG + chr1_3:63882605-63882624 None:intergenic 25.0%
CAATAAGAAGAGAGAAAAAG+TGG + chr1_3:63876555-63876574 None:intergenic 30.0%
!!! CACTTTTTCTCTCTTCTTAT+TGG - chr1_3:63876553-63876572 Msa0132660:CDS 30.0%
GTTCCAAAAGTTGTCAAAAA+TGG - chr1_3:63876639-63876658 Msa0132660:CDS 30.0%
!! CAACCATTTTTGACAACTTT+TGG + chr1_3:63876645-63876664 None:intergenic 30.0%
TGGTTGTCAAAATACCTTTA+CGG + chr1_3:63876697-63876716 None:intergenic 30.0%
! GGAGTATTATTGTACATTGT+CGG + chr1_3:63876728-63876747 None:intergenic 30.0%
GTGTGTTGAACTAAAAATTG+TGG - chr1_3:63876795-63876814 Msa0132660:CDS 30.0%
TTTCTTATACGGTGTATATC+CGG - chr1_3:63876819-63876838 Msa0132660:CDS 30.0%
ATTGTGTCTTGGAAGTTATA+CGG - chr1_3:63877001-63877020 Msa0132660:intron 30.0%
! GTGGATTAAGTTGTAACTTT+AGG - chr1_3:63877023-63877042 Msa0132660:intron 30.0%
!!! TCTTTCGTTTTGGTTTGATT+TGG + chr1_3:63877254-63877273 None:intergenic 30.0%
AAATTCAGTGAAGAAAAGCA+TGG - chr1_3:63877410-63877429 Msa0132660:intron 30.0%
TGAAATTATTACTCACTACG+TGG - chr1_3:63877557-63877576 Msa0132660:CDS 30.0%
GAAATTATTACTCACTACGT+GGG - chr1_3:63877558-63877577 Msa0132660:CDS 30.0%
AAATTATTACTCACTACGTG+GGG - chr1_3:63877559-63877578 Msa0132660:CDS 30.0%
!!! AGAGTTATTTTAAGGTAGTG+AGG + chr1_3:63877710-63877729 None:intergenic 30.0%
AAAAGATGCAATTGTTTGTG+TGG + chr1_3:63878641-63878660 None:intergenic 30.0%
GAAACCCTAATTTCTTAGAA+AGG + chr1_3:63878664-63878683 None:intergenic 30.0%
!! TTCAACTTTTTCTTCCAAAG+TGG - chr1_3:63878681-63878700 Msa0132660:intron 30.0%
ATTAACAAACACAAGAAACC+AGG + chr1_3:63878837-63878856 None:intergenic 30.0%
ATTGGAAATGAGATACTACT+AGG - chr1_3:63879071-63879090 Msa0132660:CDS 30.0%
! GTCACTAAATTTTGTGATCA+AGG + chr1_3:63879156-63879175 None:intergenic 30.0%
TTAATGAGGGAAATTTAGTG+AGG + chr1_3:63879206-63879225 None:intergenic 30.0%
ACTAATATAACAGTCAAAGG+AGG + chr1_3:63879309-63879328 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr1_3:63879496-63879515 None:intergenic 30.0%
!! TTTCAAAATGAGTGTCGTTT+AGG - chr1_3:63879496-63879515 Msa0132660:intron 30.0%
TGTGTTGAGTATTAATTGGA+GGG - chr1_3:63879630-63879649 Msa0132660:intron 30.0%
AGAAAAAGTTAGCATTGCAT+TGG - chr1_3:63879664-63879683 Msa0132660:intron 30.0%
!!! GACACTTATTTTGAAATGGA+TGG - chr1_3:63879734-63879753 Msa0132660:intron 30.0%
TTAGCATGACCTATAGATAT+TGG - chr1_3:63879809-63879828 Msa0132660:intron 30.0%
! CATTTTCACATAAACAATGC+TGG - chr1_3:63879958-63879977 Msa0132660:intron 30.0%
TTGAAATATCTGTGCTTGAT+TGG - chr1_3:63880025-63880044 Msa0132660:intron 30.0%
AAATTATGGGAGATAGAGAA+AGG - chr1_3:63880054-63880073 Msa0132660:intron 30.0%
AGATAGAGAAAGGTGATTAT+TGG - chr1_3:63880064-63880083 Msa0132660:intron 30.0%
GATAGAGAAAGGTGATTATT+GGG - chr1_3:63880065-63880084 Msa0132660:intron 30.0%
ATAGAGAAAGGTGATTATTG+GGG - chr1_3:63880066-63880085 Msa0132660:intron 30.0%
!! AATCTTCATGGGATTTTAAC+TGG - chr1_3:63880117-63880136 Msa0132660:intron 30.0%
!!! ATCTTCATGGGATTTTAACT+GGG - chr1_3:63880118-63880137 Msa0132660:intron 30.0%
GTGAACTTATCTATTCCATT+AGG - chr1_3:63880149-63880168 Msa0132660:intron 30.0%
TCGCGTAAAAAAAAAAAGAC+AGG + chr1_3:63880221-63880240 None:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG - chr1_3:63880711-63880730 Msa0132660:intron 30.0%
!!! TGACATTCATTTTGAAACGT+AGG - chr1_3:63880793-63880812 Msa0132660:intron 30.0%
!!! GACATTCATTTTGAAACGTA+GGG - chr1_3:63880794-63880813 Msa0132660:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG - chr1_3:63880965-63880984 Msa0132660:intron 30.0%
ACACCTTCATAAAAGTAAGT+TGG + chr1_3:63880971-63880990 None:intergenic 30.0%
AGGATGCTTATAATTGAAGA+CGG - chr1_3:63881189-63881208 Msa0132660:intron 30.0%
AACTAATGAGATTACAGACT+CGG + chr1_3:63881267-63881286 None:intergenic 30.0%
TGAATAATGTGAATCTTGTG+AGG + chr1_3:63881418-63881437 None:intergenic 30.0%
TCTATTGAACACACATTTAC+TGG - chr1_3:63881623-63881642 Msa0132660:exon 30.0%
TCTATTGGCGACAATTTAAA+TGG + chr1_3:63881652-63881671 None:intergenic 30.0%
TCCAACATACATTCTTCTAT+TGG + chr1_3:63881667-63881686 None:intergenic 30.0%
TAATTAGGATCAACCATGAA+AGG - chr1_3:63881782-63881801 Msa0132660:five_prime_UTR 30.0%
TGATATGGTAATTGAAACAC+TGG - chr1_3:63881820-63881839 Msa0132660:five_prime_UTR 30.0%
CGTTTCTATATTCATTGTGA+TGG - chr1_3:63881866-63881885 Msa0132660:five_prime_UTR 30.0%
! AGTGTTTGAAAAAGTGTAGT+GGG + chr1_3:63882075-63882094 None:intergenic 30.0%
TGAAATGGTTATACTTCCAA+TGG + chr1_3:63882182-63882201 None:intergenic 30.0%
! ATTGGAAGTATAACCATTTC+AGG - chr1_3:63882181-63882200 Msa0132660:five_prime_UTR 30.0%
! ATTTCAGGCCATAAGTTTTT+GGG - chr1_3:63882196-63882215 Msa0132660:five_prime_UTR 30.0%
AATAAAACACCACAAGGAAT+TGG + chr1_3:63882226-63882245 None:intergenic 30.0%
TTGGTATGCTTTGCAAAAAA+AGG - chr1_3:63882351-63882370 Msa0132660:five_prime_UTR 30.0%
TGGTATGCTTTGCAAAAAAA+GGG - chr1_3:63882352-63882371 Msa0132660:five_prime_UTR 30.0%
TTGCAAAAAAAGGGTTTACT+AGG - chr1_3:63882361-63882380 Msa0132660:five_prime_UTR 30.0%
TGAATGCATGTTACCTAAAA+AGG - chr1_3:63882413-63882432 Msa0132660:five_prime_UTR 30.0%
ATTCAACATTGTACAAATGC+CGG + chr1_3:63882452-63882471 None:intergenic 30.0%
CGAATAAACTCACAATCTAA+AGG + chr1_3:63882505-63882524 None:intergenic 30.0%
! TGTTGTGGTGTCAAACATTT+GGG + chr1_3:63876447-63876466 None:intergenic 35.0%
! TTGTTGTGGTGTCAAACATT+TGG + chr1_3:63876448-63876467 None:intergenic 35.0%
TGTTTGACACCACAACAAAT+AGG - chr1_3:63876450-63876469 Msa0132660:CDS 35.0%
ATATCCGGTGGTCTATTAAT+TGG - chr1_3:63876834-63876853 Msa0132660:CDS 35.0%
ACATCCAATTAATAGACCAC+CGG + chr1_3:63876841-63876860 None:intergenic 35.0%
TTCCAAGACACAATTCAATC+TGG + chr1_3:63876995-63877014 None:intergenic 35.0%
!! TGTTAGATTGATTCGAGCAT+TGG + chr1_3:63877095-63877114 None:intergenic 35.0%
!! GTCTGAGTTTTTGAAAACTC+AGG + chr1_3:63877223-63877242 None:intergenic 35.0%
!!! TTCGTTTTGGTTTGATTTGG+TGG + chr1_3:63877251-63877270 None:intergenic 35.0%
!! TTTGGAGTTTTGCACTCTTT+TGG - chr1_3:63877345-63877364 Msa0132660:intron 35.0%
TGTTTCAATAATGAGCACTC+TGG - chr1_3:63877438-63877457 Msa0132660:intron 35.0%
TAATACAAACGTGGGAAGAT+AGG - chr1_3:63878305-63878324 Msa0132660:intron 35.0%
!!! TCATCCATTTTGAAGTATCG+GGG + chr1_3:63878345-63878364 None:intergenic 35.0%
!!! GTCATCCATTTTGAAGTATC+GGG + chr1_3:63878346-63878365 None:intergenic 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG + chr1_3:63878347-63878366 None:intergenic 35.0%
!! CCTTTATCTTTATTTGGTGC+CGG - chr1_3:63878599-63878618 Msa0132660:intron 35.0%
GGTCCAACCTTAATAAAAGA+TGG + chr1_3:63879257-63879276 None:intergenic 35.0%
TGCTTATATTAGTGATCGGA+GGG + chr1_3:63879362-63879381 None:intergenic 35.0%
TTGCTTATATTAGTGATCGG+AGG + chr1_3:63879363-63879382 None:intergenic 35.0%
GTGTGTTGAGTATTAATTGG+AGG - chr1_3:63879629-63879648 Msa0132660:intron 35.0%
AATTAACAATGTACACCCTC+CGG + chr1_3:63879771-63879790 None:intergenic 35.0%
AAACTTTGATTACGACGCAT+TGG - chr1_3:63879924-63879943 Msa0132660:intron 35.0%
AATGCTGGAGATCCATTTAA+GGG - chr1_3:63879973-63879992 Msa0132660:intron 35.0%
CCATAACTACTTCCCTTAAA+TGG + chr1_3:63879988-63880007 None:intergenic 35.0%
CCATTTAAGGGAAGTAGTTA+TGG - chr1_3:63879985-63880004 Msa0132660:intron 35.0%
!!! GGATTTTAACTGGGTAAGTT+TGG - chr1_3:63880127-63880146 Msa0132660:intron 35.0%
ACGGAGGGAGTAATAATTAT+AGG + chr1_3:63880562-63880581 None:intergenic 35.0%
AAACGACACTCATTGTGAAA+CGG + chr1_3:63880581-63880600 None:intergenic 35.0%
!! TTCACAATGAGTGTCGTTTA+AGG - chr1_3:63880582-63880601 Msa0132660:intron 35.0%
CTAAAAGACACCTTCACAAA+AGG + chr1_3:63880916-63880935 None:intergenic 35.0%
AGAATGCAATGCATGAAAGT+TGG - chr1_3:63881462-63881481 Msa0132660:CDS 35.0%
GCCAATAGAAGAATGTATGT+TGG - chr1_3:63881663-63881682 Msa0132660:five_prime_UTR 35.0%
GTTATCAATAGCTCCTTTCA+TGG + chr1_3:63881798-63881817 None:intergenic 35.0%
TATGGTAATTGAAACACTGG+AGG - chr1_3:63881823-63881842 Msa0132660:five_prime_UTR 35.0%
TTACTCACCTGTTCAAGAAA+TGG + chr1_3:63881914-63881933 None:intergenic 35.0%
! GAGTGTTTGAAAAAGTGTAG+TGG + chr1_3:63882076-63882095 None:intergenic 35.0%
AGCTATTTGGGTGATCTAAT+AGG - chr1_3:63882132-63882151 Msa0132660:five_prime_UTR 35.0%
ATTACCTTCAAGAAGTCCAT+TGG - chr1_3:63882163-63882182 Msa0132660:five_prime_UTR 35.0%
CAAAAACTTATGGCCTGAAA+TGG + chr1_3:63882197-63882216 None:intergenic 35.0%
! CATTTCAGGCCATAAGTTTT+TGG - chr1_3:63882195-63882214 Msa0132660:five_prime_UTR 35.0%
TTGGACATCCCAAAAACTTA+TGG + chr1_3:63882207-63882226 None:intergenic 35.0%
CGAGTTAATAAAACACCACA+AGG + chr1_3:63882232-63882251 None:intergenic 35.0%
GATATCCTTAGATAAGGTGT+TGG + chr1_3:63882266-63882285 None:intergenic 35.0%
TGAAGGAGATATTTCACATG+TGG - chr1_3:63882543-63882562 Msa0132660:five_prime_UTR 35.0%
GCACGTTACTATTCAAATGT+TGG - chr1_3:63882576-63882595 Msa0132660:five_prime_UTR 35.0%
GTACATTGTCGGACAACAAT+TGG + chr1_3:63876717-63876736 None:intergenic 40.0%
TTAGTTCAACACACACCTAG+AGG + chr1_3:63876789-63876808 None:intergenic 40.0%
TGCCAGATTGAATTGTGTCT+TGG - chr1_3:63876990-63877009 Msa0132660:intron 40.0%
!! TTGATTCGAGCATTGGCAAA+TGG + chr1_3:63877088-63877107 None:intergenic 40.0%
!! TTGGTTTGATTTGGTGGTGT+TGG + chr1_3:63877245-63877264 None:intergenic 40.0%
TTGCCATCACCAATTGCAAT+GGG - chr1_3:63877514-63877533 Msa0132660:CDS 40.0%
GGAATCCAATCATCTCTTAG+AGG + chr1_3:63877855-63877874 None:intergenic 40.0%
!! GATACGTATCGGAAAGTATC+GGG + chr1_3:63878405-63878424 None:intergenic 40.0%
! GGATACGTATCGGAAAGTAT+CGG + chr1_3:63878406-63878425 None:intergenic 40.0%
GATACTCTCTGGATACGTAT+CGG + chr1_3:63878416-63878435 None:intergenic 40.0%
ACACAAGTATCCGTGTGTAT+CGG + chr1_3:63878495-63878514 None:intergenic 40.0%
CCGGCACCAAATAAAGATAA+AGG + chr1_3:63878602-63878621 None:intergenic 40.0%
ATGCAATTGTTTGTGTGGTG+TGG + chr1_3:63878636-63878655 None:intergenic 40.0%
ATGTTAATGTGCTATGAGCC+TGG - chr1_3:63878816-63878835 Msa0132660:intron 40.0%
AATCAAGATACGATACGGCT+GGG + chr1_3:63878931-63878950 None:intergenic 40.0%
AAATCAAGATACGATACGGC+TGG + chr1_3:63878932-63878951 None:intergenic 40.0%
!! ATTTTTCCGTATCGGCGTAT+CGG - chr1_3:63878957-63878976 Msa0132660:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr1_3:63879492-63879511 None:intergenic 40.0%
! ATGGATGGAGTATTAGTGAC+CGG - chr1_3:63879749-63879768 Msa0132660:intron 40.0%
CAATGCTGGAGATCCATTTA+AGG - chr1_3:63879972-63879991 Msa0132660:intron 40.0%
! CTAGAAGACACCTTTTGTGA+AGG - chr1_3:63880903-63880922 Msa0132660:intron 40.0%
AAAGTGCAAATCACACCTTG+AGG - chr1_3:63881013-63881032 Msa0132660:intron 40.0%
! TTTTAGCAAGTCACACCTCA+AGG + chr1_3:63881031-63881050 None:intergenic 40.0%
TTGCTAAAAGACACCACCAA+AGG - chr1_3:63881042-63881061 Msa0132660:intron 40.0%
TGCTAAAAGACACCACCAAA+GGG - chr1_3:63881043-63881062 Msa0132660:intron 40.0%
AATGAGATTACAGACTCGGA+AGG + chr1_3:63881263-63881282 None:intergenic 40.0%
AGAAGGGAAAAACTACCAGA+TGG - chr1_3:63881381-63881400 Msa0132660:intron 40.0%
GAAGGGAAAAACTACCAGAT+GGG - chr1_3:63881382-63881401 Msa0132660:intron 40.0%
GAGGTATACAAAATCCCATC+TGG + chr1_3:63881399-63881418 None:intergenic 40.0%
! AAAGTTGGCGCATTGATCAA+TGG - chr1_3:63881477-63881496 Msa0132660:CDS 40.0%
GACTCTACTTCTTGCTCATA+AGG - chr1_3:63881524-63881543 Msa0132660:CDS 40.0%
ATTGAAACACTGGAGGAAAG+CGG - chr1_3:63881830-63881849 Msa0132660:five_prime_UTR 40.0%
TGAATATAGAAACGATCGCG+AGG + chr1_3:63881860-63881879 None:intergenic 40.0%
!! CATTGTGATGGAGCTTTGTT+CGG - chr1_3:63881878-63881897 Msa0132660:five_prime_UTR 40.0%
AGTGGCTATGCTAACTTTCA+TGG + chr1_3:63882050-63882069 None:intergenic 40.0%
GACTTCTTGAAGGTAATCCT+TGG + chr1_3:63882160-63882179 None:intergenic 40.0%
! ACTTCCAATGGACTTCTTGA+AGG + chr1_3:63882170-63882189 None:intergenic 40.0%
ACACACCAACACCTTATCTA+AGG - chr1_3:63882258-63882277 Msa0132660:five_prime_UTR 40.0%
CACCTTATCTAAGGATATCG+AGG - chr1_3:63882267-63882286 Msa0132660:five_prime_UTR 40.0%
CACCTCGATATCCTTAGATA+AGG + chr1_3:63882272-63882291 None:intergenic 40.0%
ATATCGAGGTGATTGCTTCT+AGG - chr1_3:63882281-63882300 Msa0132660:five_prime_UTR 40.0%
TATCGAGGTGATTGCTTCTA+GGG - chr1_3:63882282-63882301 Msa0132660:five_prime_UTR 40.0%
! CATCGCGAAGTTTCCTTTTT+AGG + chr1_3:63882429-63882448 None:intergenic 40.0%
! ATTTTGTCTGCAAGGCACAA+AGG + chr1_3:63882643-63882662 None:intergenic 40.0%
TTGTGCCTTGCAGACAAAAT+TGG - chr1_3:63882643-63882662 Msa0132660:five_prime_UTR 40.0%
! GTCGGTCATCCTATTTGTTG+TGG + chr1_3:63876462-63876481 None:intergenic 45.0%
CTTATACGGTGTATATCCGG+TGG - chr1_3:63876822-63876841 Msa0132660:CDS 45.0%
TCAATCTGGCACACATTTCG+AGG + chr1_3:63876981-63877000 None:intergenic 45.0%
GTGTCTTGGAAGTTATACGG+TGG - chr1_3:63877004-63877023 Msa0132660:intron 45.0%
! GCACTCTGGAGAAGAAGATA+AGG - chr1_3:63877452-63877471 Msa0132660:intron 45.0%
!! CATTGCAATTGGTGATGGCA+AGG + chr1_3:63877515-63877534 None:intergenic 45.0%
CTTGCCATCACCAATTGCAA+TGG - chr1_3:63877513-63877532 Msa0132660:CDS 45.0%
TGCCATCACCAATTGCAATG+GGG - chr1_3:63877515-63877534 Msa0132660:CDS 45.0%
CCAATCATCTCTTAGAGGAG+AGG + chr1_3:63877850-63877869 None:intergenic 45.0%
! CCTCTCCTCTAAGAGATGAT+TGG - chr1_3:63877847-63877866 Msa0132660:intron 45.0%
TAATCTCCTCCATCGAGAGA+AGG + chr1_3:63878274-63878293 None:intergenic 45.0%
GAAGCCCCGATACTTCAAAA+TGG - chr1_3:63878338-63878357 Msa0132660:intron 45.0%
CACAAGTATCCGTGTGTATC+GGG + chr1_3:63878494-63878513 None:intergenic 45.0%
TTGTTTGTGTGGTGTGGTGT+GGG + chr1_3:63878630-63878649 None:intergenic 45.0%
ATTGTTTGTGTGGTGTGGTG+TGG + chr1_3:63878631-63878650 None:intergenic 45.0%
CCTGGATACGAGATACGATA+CGG + chr1_3:63878996-63879015 None:intergenic 45.0%
TATATACACCCTGTGAAGCC+TGG + chr1_3:63879014-63879033 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr1_3:63879493-63879512 None:intergenic 45.0%
! ATGGAGTATTAGTGACCGGA+GGG - chr1_3:63879753-63879772 Msa0132660:intron 45.0%
TATTGGGGATACGTCACAAC+TGG - chr1_3:63880081-63880100 Msa0132660:intron 45.0%
GCACTGAGGGAAATCTTCAT+GGG - chr1_3:63880106-63880125 Msa0132660:intron 45.0%
GACACTCATTGTGAAACGGA+GGG + chr1_3:63880577-63880596 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr1_3:63881046-63881065 Msa0132660:intron 45.0%
! GATGCTGCCATTTCTTGAAC+AGG - chr1_3:63881904-63881923 Msa0132660:five_prime_UTR 45.0%
!! GAAAAAGTGTAGTGGGCTAG+TGG + chr1_3:63882068-63882087 None:intergenic 45.0%
TTGGGATGTCCAATTCCTTG+TGG - chr1_3:63882214-63882233 Msa0132660:five_prime_UTR 45.0%
! TTCTAGGGATGCCACAATCA+CGG - chr1_3:63882297-63882316 Msa0132660:five_prime_UTR 45.0%
AAAAGGAAACTTCGCGATGC+CGG - chr1_3:63882430-63882449 Msa0132660:five_prime_UTR 45.0%
! CAGCACCAATTTTGTCTGCA+AGG + chr1_3:63882651-63882670 None:intergenic 45.0%
!! TACAAAATAAAATATATATT+AGG + chr1_3:63876749-63876768 None:intergenic 5.0%
!!! AATATTTTTTTATGTTAAAA+TGG + chr1_3:63877919-63877938 None:intergenic 5.0%
!! CGAGCATTGGCAAATGGCAA+TGG + chr1_3:63877082-63877101 None:intergenic 50.0%
CTCCCCATTGCAATTGGTGA+TGG + chr1_3:63877520-63877539 None:intergenic 50.0%
ACGTGTCTCCCCATTGCAAT+TGG + chr1_3:63877526-63877545 None:intergenic 50.0%
!! GGAAAGTATCGGGCAGGTAT+CGG + chr1_3:63878395-63878414 None:intergenic 50.0%
! CGGGACGTATCGGAAAGTAT+CGG + chr1_3:63878475-63878494 None:intergenic 50.0%
CACCGTCGAAGTCTTGGTAT+CGG - chr1_3:63878721-63878740 Msa0132660:intron 50.0%
GTCCGATACCAAGACTTCGA+CGG + chr1_3:63878726-63878745 None:intergenic 50.0%
! GTCTTGGTATCGGACGACTT+TGG - chr1_3:63878731-63878750 Msa0132660:intron 50.0%
CCGTATCGTATCTCGTATCC+AGG - chr1_3:63878993-63879012 Msa0132660:CDS 50.0%
ATCTCGTATCCAGGCTTCAC+AGG - chr1_3:63879002-63879021 Msa0132660:CDS 50.0%
TCTCGTATCCAGGCTTCACA+GGG - chr1_3:63879003-63879022 Msa0132660:CDS 50.0%
! GATGGAGTATTAGTGACCGG+AGG - chr1_3:63879752-63879771 Msa0132660:intron 50.0%
! GGCACTGAGGGAAATCTTCA+TGG - chr1_3:63880105-63880124 Msa0132660:intron 50.0%
CGACACTCATTGTGAAACGG+AGG + chr1_3:63880578-63880597 None:intergenic 50.0%
TCTTGCTACAAGCCACCCTT+TGG + chr1_3:63881061-63881080 None:intergenic 50.0%
GGGTGATCTAATAGGCTCCA+AGG - chr1_3:63882140-63882159 Msa0132660:five_prime_UTR 50.0%
TCTAGGGATGCCACAATCAC+GGG - chr1_3:63882298-63882317 Msa0132660:five_prime_UTR 50.0%
ACTTCGACTACCCGTGATTG+TGG + chr1_3:63882311-63882330 None:intergenic 50.0%
ACAATCACGGGTAGTCGAAG+TGG - chr1_3:63882310-63882329 Msa0132660:five_prime_UTR 50.0%
TCTCCGTGTCCTTCTCTCGA+TGG - chr1_3:63878262-63878281 Msa0132660:intron 55.0%
CCTCCATCGAGAGAAGGACA+CGG + chr1_3:63878268-63878287 None:intergenic 55.0%
TGCAGGATACGCAGGGGATA+CGG + chr1_3:63878372-63878391 None:intergenic 55.0%
TATCGGTGCAGGATACGCAG+GGG + chr1_3:63878378-63878397 None:intergenic 55.0%
! GTATCGGTGCAGGATACGCA+GGG + chr1_3:63878379-63878398 None:intergenic 55.0%
!! CGTATCGGAAAGTATCGGGC+AGG + chr1_3:63878401-63878420 None:intergenic 55.0%
CCGTGTGTATCGGGACGTAT+CGG + chr1_3:63878485-63878504 None:intergenic 55.0%
CCGATACGTCCCGATACACA+CGG - chr1_3:63878482-63878501 Msa0132660:intron 55.0%
AAAGTGGACGGCGACCACTT+TGG + chr1_3:63878698-63878717 None:intergenic 55.0%
AAAGTGGTCGCCGTCCACTT+TGG - chr1_3:63878697-63878716 Msa0132660:intron 55.0%
TTTGGCCACCGTCGAAGTCT+TGG - chr1_3:63878715-63878734 Msa0132660:intron 55.0%
CGATACCAAGACTTCGACGG+TGG + chr1_3:63878723-63878742 None:intergenic 55.0%
! ACTGCACCGATACGCCGATA+CGG + chr1_3:63878966-63878985 None:intergenic 55.0%
TGGGGATACGTCACAACTGG+TGG - chr1_3:63880084-63880103 Msa0132660:intron 55.0%
! GTCACAACTGGTGGCACTGA+GGG - chr1_3:63880093-63880112 Msa0132660:intron 55.0%
TGCTACAAGCCACCCTTTGG+TGG + chr1_3:63881058-63881077 None:intergenic 55.0%
CCGTGTCCTTCTCTCGATGG+AGG - chr1_3:63878265-63878284 Msa0132660:intron 60.0%
!! GGTATCGGTGCAGGATACGC+AGG + chr1_3:63878380-63878399 None:intergenic 60.0%
!! TATCGGGCAGGTATCGGTGC+AGG + chr1_3:63878389-63878408 None:intergenic 60.0%
TGGTGTGGTGTGGGTCGTAC+CGG + chr1_3:63878621-63878640 None:intergenic 60.0%
TCGACGGTGGCCAAAGTGGA+CGG + chr1_3:63878710-63878729 None:intergenic 60.0%
GACTTCGACGGTGGCCAAAG+TGG + chr1_3:63878714-63878733 None:intergenic 60.0%
CGTCACAACTGGTGGCACTG+AGG - chr1_3:63880092-63880111 Msa0132660:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 63876346 63882699 63876346 ID=Msa0132660;Name=Msa0132660
chr1_3 mRNA 63876346 63882699 63876346 ID=Msa0132660-mRNA-1;Parent=Msa0132660;Name=Msa0132660-mRNA-1;_AED=0.16;_eAED=0.16;_QI=1059|1|0.8|1|1|1|5|0|438
chr1_3 exon 63876346 63876891 63876346 ID=Msa0132660-mRNA-1:exon:21372;Parent=Msa0132660-mRNA-1
chr1_3 exon 63877120 63877256 63877120 ID=Msa0132660-mRNA-1:exon:21371;Parent=Msa0132660-mRNA-1
chr1_3 exon 63877469 63877662 63877469 ID=Msa0132660-mRNA-1:exon:21370;Parent=Msa0132660-mRNA-1
chr1_3 exon 63878906 63879137 63878906 ID=Msa0132660-mRNA-1:exon:21369;Parent=Msa0132660-mRNA-1
chr1_3 exon 63881433 63882699 63881433 ID=Msa0132660-mRNA-1:exon:21368;Parent=Msa0132660-mRNA-1
chr1_3 five_prime_UTR 63881641 63882699 63881641 ID=Msa0132660-mRNA-1:five_prime_utr;Parent=Msa0132660-mRNA-1
chr1_3 CDS 63881433 63881640 63881433 ID=Msa0132660-mRNA-1:cds;Parent=Msa0132660-mRNA-1
chr1_3 CDS 63878906 63879137 63878906 ID=Msa0132660-mRNA-1:cds;Parent=Msa0132660-mRNA-1
chr1_3 CDS 63877469 63877662 63877469 ID=Msa0132660-mRNA-1:cds;Parent=Msa0132660-mRNA-1
chr1_3 CDS 63877120 63877256 63877120 ID=Msa0132660-mRNA-1:cds;Parent=Msa0132660-mRNA-1
chr1_3 CDS 63876346 63876891 63876346 ID=Msa0132660-mRNA-1:cds;Parent=Msa0132660-mRNA-1
Gene Sequence

>Msa0132660

ATGGAAAATTCAGTGAAGAAAAGCATGGAACTATGTTTCAATAATGAGCACTCTGGAGAAGAAGATAAGGATAGAGAAATTCAAAAGAATAACAATGGAGATATGTGCCTTGCCATCACCAATTGCAATGGGGAGACACGTGCCAAATTAGATGAAATTATTACTCACTACGTGGGGACACTAAATCAAAAAATATCACATTTTTTGGGGTACCCCACTAATCAAAACTTTGATTACGACGCATTGGCACCTTCACTACATTTTCACATAAACAATGCTGGAGATCCATTTAAGGGAAGTAGTTATGGTATAAATTCAACAGATTTTGAAATATCTGTGCTTGATTGGTTTGCTAAATTATGGGAGATAGAGAAAGGTGATTATTGGGGATACGTCACAACTGGTGGCACTGAGGGAAATCTTCATGGGATTTTAACTGGAAGGGAAAAACTACCAGATGGGATTTTGTATACCTCACAAGATTCACATTATTCAATATTCAAGATTGCAAGAATGTATAGAATGCAATGCATGAAAGTTGGCGCATTGATCAATGGTGAGATTGATTGTGCTGATCTAAAGACTCTACTTCTTGCTCATAAGGACAAGCCAGCTATCATCAATTTAAATATAGGATCAACCATGAAAGGAGCTATTGATAACATTGATATGGTAATTGAAACACTGGAGGAAAGCGGTTTTCCTCGCGATCGTTTCTATATTCATTGTGATGGAGCTTTGTTCGGAATGATGCTGCCATTTCTTGAACAGGCTCCAAGGATTACCTTCAAGAAGTCCATTGGAAGTATAACCATTTCAGGCCATAAGTTTTTGGGATGTCCAATTCCTTGTGGTGTTTTATTAACTCGCTTAGAACACACCAACACCTTATCTAAGGATATCGAGGTGATTGCTTCTAGGGATGCCACAATCACGGGTAGTCGAAGTGGACATGCTTCAATTTTTATTTGGTATGCTTTGCAAAAAAAGGGTTTACTAGGACTTGAGAATGAAGTGCATAAGTGCATAATGAATGCATGTTACCTAAAAAGGAAACTTCGCGATGCCGGCATTTGTACAATGTTGAATGAATATAGCAATACAGTTGTTTTTGAGAAGCCTTTAGATTGTGAGTTTATTCGAAAATGGAATTTAGCTTATGAAGGAGATATTTCACATGTGGTAGTGATGCAGCACGTTACTATTCAAATGTTGGACTCCTTTGTTGATGAGTTTATCAAAACAAGATTGAGAAAGCCTTTGTGCCTTGCAGACAAAATTGGTGCTGAAAATTGTGCCTGTATACTGCATATTTGA
Protein sequence

>Msa0132660

MENSVKKSMELCFNNEHSGEEDKDREIQKNNNGDMCLAITNCNGETRAKLDEIITHYVGTLNQKISHFLGYPTNQNFDYDALAPSLHFHINNAGDPFKGSSYGINSTDFEISVLDWFAKLWEIEKGDYWGYVTTGGTEGNLHGILTGREKLPDGILYTSQDSHYSIFKIARMYRMQCMKVGALINGEIDCADLKTLLLAHKDKPAIINLNIGSTMKGAIDNIDMVIETLEESGFPRDRFYIHCDGALFGMMLPFLEQAPRITFKKSIGSITISGHKFLGCPIPCGVLLTRLEHTNTLSKDIEVIASRDATITGSRSGHASIFIWYALQKKGLLGLENEVHKCIMNACYLKRKLRDAGICTMLNEYSNTVVFEKPLDCEFIRKWNLAYEGDISHVVVMQHVTIQMLDSFVDEFIKTRLRKPLCLADKIGAENCACILHI*