AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039090 MtrunA17_Chr1g0203081 97.639 720 15 2 1 719 1 719 0.0 1461
Msa0039090 MtrunA17_Chr6g0472281 69.817 709 179 9 1 691 1 692 0.0 981
Msa0039090 MtrunA17_Chr3g0143921 43.034 567 274 12 125 667 139 680 3.09e-137 431
Msa0039090 MtrunA17_Chr2g0329671 39.698 597 323 14 114 696 167 740 2.50e-119 385
Msa0039090 MtrunA17_Chr4g0033791 40.304 526 291 9 125 645 147 654 3.89e-115 372
Msa0039090 MtrunA17_Chr1g0202861 93.082 159 8 1 709 864 198 356 1.19e-97 309
Msa0039090 MtrunA17_Chr1g0202871 54.945 273 84 6 605 864 69 315 2.96e-83 269
Msa0039090 MtrunA17_Chr1g0202891 72.727 154 39 1 714 864 162 315 3.10e-73 243
Msa0039090 MtrunA17_Chr1g0202931 71.429 154 41 1 714 864 162 315 2.29e-71 238
Msa0039090 MtrunA17_Chr8g0386971 66.216 148 50 0 717 864 168 315 1.09e-61 211
Msa0039090 MtrunA17_Chr6g0470501 62.416 149 53 1 717 862 195 343 2.84e-58 202
Msa0039090 MtrunA17_Chr5g0448621 35.135 370 180 9 125 479 126 450 4.49e-56 209
Msa0039090 MtrunA17_Chr5g0448621 61.111 108 35 1 564 671 607 707 5.74e-32 134
Msa0039090 MtrunA17_Chr6g0470321 59.355 155 57 2 714 862 170 324 1.09e-54 192
Msa0039090 MtrunA17_Chr7g0262941 48.421 190 79 4 691 861 129 318 1.02e-47 172
Msa0039090 MtrunA17_Chr1g0182541 50.000 166 80 1 699 861 152 317 5.29e-47 170
Msa0039090 MtrunA17_Chr3g0117251 32.941 170 110 2 699 864 1 170 2.36e-26 106
Msa0039090 MtrunA17_Chr8g0388831 40.164 122 72 1 737 857 196 317 3.35e-22 99.0
Msa0039090 MtrunA17_Chr4g0058731 30.994 171 114 2 698 864 165 335 2.35e-21 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039090 AT1G64530.1 60.508 709 235 16 29 704 5 701 0.0 819
Msa0039090 AT4G24020.1 62.636 645 207 8 35 653 35 671 0.0 780
Msa0039090 AT1G64530.2 62.774 548 175 9 180 704 5 546 0.0 678
Msa0039090 AT4G24020.2 61.818 440 142 5 259 680 1 432 8.20e-174 519
Msa0039090 AT1G76350.2 40.276 653 338 15 32 670 27 641 4.39e-139 433
Msa0039090 AT1G76350.1 40.276 653 338 15 32 670 27 641 4.39e-139 433
Msa0039090 AT1G76350.4 40.276 653 338 15 32 670 27 641 4.39e-139 433
Msa0039090 AT1G76350.3 40.276 653 338 15 32 670 27 641 4.39e-139 433
Msa0039090 AT1G20640.1 42.199 564 299 8 121 668 101 653 4.34e-131 413
Msa0039090 AT1G20640.3 42.199 564 299 8 121 668 101 653 4.34e-131 413
Msa0039090 AT1G20640.2 42.199 564 299 8 121 668 101 653 4.34e-131 413
Msa0039090 AT2G17150.1 39.967 598 290 15 125 673 124 701 3.13e-124 397
Msa0039090 AT2G17150.6 39.967 598 290 15 125 673 124 701 3.13e-124 397
Msa0039090 AT2G43500.3 36.791 617 349 12 44 646 74 663 1.17e-116 377
Msa0039090 AT2G43500.9 36.791 617 349 12 44 646 74 663 1.17e-116 377
Msa0039090 AT2G43500.6 36.791 617 349 12 44 646 74 663 1.17e-116 377
Msa0039090 AT2G43500.1 36.791 617 349 12 44 646 74 663 1.17e-116 377
Msa0039090 AT2G43500.10 36.791 617 349 12 44 646 74 663 1.17e-116 377
Msa0039090 AT2G43500.11 36.791 617 349 12 44 646 74 663 1.17e-116 377
Msa0039090 AT2G43500.7 36.791 617 349 12 44 646 74 663 1.17e-116 377
Msa0039090 AT2G43500.8 36.791 617 349 12 44 646 74 663 1.17e-116 377
Msa0039090 AT3G59580.2 39.015 528 293 8 125 647 106 609 3.75e-116 375
Msa0039090 AT3G59580.3 39.015 528 293 8 125 647 106 609 3.75e-116 375
Msa0039090 AT3G59580.1 39.015 528 293 8 125 647 106 609 3.75e-116 375
Msa0039090 AT2G43500.5 36.190 630 348 13 44 646 74 676 1.47e-113 369
Msa0039090 AT2G43500.4 36.190 630 348 13 44 646 74 676 1.47e-113 369
Msa0039090 AT2G43500.2 35.873 630 350 13 44 646 74 676 2.44e-112 366
Msa0039090 AT4G38340.2 36.243 527 264 11 125 647 43 501 3.48e-96 317
Msa0039090 AT4G38340.1 36.053 527 265 11 125 647 114 572 3.89e-95 316
Msa0039090 AT2G17150.2 36.944 517 267 13 125 595 124 627 4.15e-94 310
Msa0039090 AT2G17150.5 37.115 520 265 14 125 595 124 630 1.47e-93 308
Msa0039090 AT2G17150.3 37.115 520 265 14 125 595 124 630 1.47e-93 308
Msa0039090 AT4G35270.2 40.984 366 202 4 125 486 153 508 2.08e-86 296
Msa0039090 AT4G35270.2 60.345 116 39 1 560 675 635 743 5.32e-35 144
Msa0039090 AT4G35270.1 40.984 366 202 4 125 486 153 508 2.08e-86 296
Msa0039090 AT4G35270.1 60.345 116 39 1 560 675 635 743 5.32e-35 144
Msa0039090 AT4G35270.3 40.984 366 202 4 125 486 153 508 2.08e-86 296
Msa0039090 AT4G35270.3 60.345 116 39 1 560 675 635 743 5.32e-35 144
Msa0039090 AT4G35270.4 40.984 366 202 4 125 486 153 508 2.08e-86 296
Msa0039090 AT4G35270.4 60.345 116 39 1 560 675 635 743 5.32e-35 144
Msa0039090 AT2G17150.4 37.931 464 220 14 258 673 3 446 1.93e-77 265
Msa0039090 AT4G23430.4 62.179 156 55 2 709 860 147 302 5.01e-57 199
Msa0039090 AT4G23430.2 62.179 156 55 2 709 860 157 312 6.93e-57 198
Msa0039090 AT4G23420.3 62.179 156 55 2 709 860 174 329 9.42e-57 198
Msa0039090 AT4G23420.1 62.179 156 55 2 709 860 157 312 1.27e-56 197
Msa0039090 AT4G23420.2 62.179 156 55 2 709 860 157 312 1.27e-56 197
Msa0039090 AT4G11410.1 60.135 148 59 0 717 864 168 315 7.14e-56 196
Msa0039090 AT4G23430.3 61.538 156 54 3 709 860 147 300 1.18e-54 192
Msa0039090 AT4G23430.1 61.538 156 54 3 709 860 157 310 1.61e-54 192
Msa0039090 AT5G02540.1 51.163 172 76 2 698 861 145 316 1.49e-48 176
Msa0039090 AT2G37540.1 48.077 156 78 1 709 861 161 316 1.84e-43 160
Msa0039090 AT4G23420.5 58.491 106 40 2 709 810 157 262 1.69e-31 124
Msa0039090 AT4G23420.4 63.736 91 29 2 709 795 157 247 1.24e-28 116
Msa0039090 AT4G11410.2 64.103 78 28 0 717 794 168 245 1.05e-26 110
Msa0039090 AT5G50130.8 35.000 160 100 2 698 853 120 279 7.12e-23 100
Msa0039090 AT5G50130.7 35.404 161 99 3 698 853 120 280 2.78e-22 99.0
Msa0039090 AT5G50130.1 34.911 169 105 3 698 861 153 321 4.11e-22 99.0
Msa0039090 AT2G37540.2 50.588 85 39 1 709 790 161 245 5.93e-22 97.1
Msa0039090 AT4G24050.1 42.975 121 64 3 746 863 204 322 4.93e-20 92.8
Msa0039090 AT1G64590.1 38.462 130 79 1 733 861 191 320 1.43e-18 88.6

Find 211 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCCACCAATAGAAAATT+TGG 0.126044 1_1:-68604550 Msa0039090:CDS
ATATCGTAGATGCTCATTTA+TGG 0.198226 1_1:-68603321 Msa0039090:CDS
CCCTCCTCCTCCTCCATATT+TGG 0.200402 1_1:+68602848 None:intergenic
GTTCATTATGCTCTCATGTT+TGG 0.230421 1_1:-68603169 Msa0039090:CDS
CTGTTTCATTGTTGACAATA+TGG 0.260307 1_1:+68603024 None:intergenic
ACCCGATGCCTCACCAAATA+TGG 0.272048 1_1:-68602861 Msa0039090:CDS
CTGAGCTTATAGTTAATGTT+TGG 0.274240 1_1:-68599383 None:intergenic
CTGGGATTTCAGCATCAATT+TGG 0.274620 1_1:-68599676 Msa0039090:CDS
CTTGAGAAAGAAGTGATTAA+TGG 0.295335 1_1:-68601939 Msa0039090:intron
TTCATTATGCTCTCATGTTT+GGG 0.297926 1_1:-68603168 Msa0039090:CDS
CTGTAGGCATAGGAGTGTTT+TGG 0.304108 1_1:-68603434 Msa0039090:CDS
AGAAGAACATGGTTGTTCTA+TGG 0.308360 1_1:-68605475 Msa0039090:CDS
CCTTGCTGGCTGGACTTATT+CGG 0.317789 1_1:+68602086 None:intergenic
TGAGCTTATAGTTAATGTTT+GGG 0.320031 1_1:-68599382 None:intergenic
TATCGTAGATGCTCATTTAT+GGG 0.324285 1_1:-68603320 Msa0039090:CDS
GAATGTATTGGCTCAGGTTT+GGG 0.327805 1_1:-68604460 Msa0039090:CDS
ACATGGAAGGGACGCTGATT+TGG 0.331121 1_1:-68599709 Msa0039090:CDS
GCCTACAGGGAACCCATGTT+TGG 0.338019 1_1:+68603449 None:intergenic
GAAAGCTGAAGCTGCAAGTT+TGG 0.338488 1_1:+68605311 None:intergenic
TTTCTCAAGGTTCTGTTTGT+GGG 0.342639 1_1:+68605558 None:intergenic
ATCAACCTTCTTCTCCTCTA+TGG 0.342830 1_1:-68605356 Msa0039090:CDS
GATTTAATAGATTGAGCAAT+AGG 0.344298 1_1:+68602893 None:intergenic
GTTTGTTTCTGATACTTTAG+AGG 0.346300 1_1:+68602010 None:intergenic
CACTAACTCCCTTCACTTGT+GGG 0.347652 1_1:+68599772 None:intergenic
TATTGCTTAACGAGCCTTGC+TGG 0.353239 1_1:+68602072 None:intergenic
TTTAGAAACATCATGGCCTT+TGG 0.372150 1_1:-68605439 Msa0039090:CDS
CAGATACGCTTCATTGTAGT+AGG 0.378516 1_1:+68602284 None:intergenic
TGAATGTATTGGCTCAGGTT+TGG 0.382919 1_1:-68604461 Msa0039090:CDS
GATGGAACTCTAGGCCTTCC+TGG 0.385064 1_1:-68604303 Msa0039090:CDS
TAACACGTTTGAGCTTAGAT+AGG 0.389963 1_1:+68602204 None:intergenic
CTCCATATTTGGTGAGGCAT+CGG 0.392508 1_1:+68602859 None:intergenic
CGGTATGTACTTACAACTTC+AGG 0.393209 1_1:-68604417 Msa0039090:CDS
CAACATGGTCAAGGTGTTGC+GGG 0.395005 1_1:-68603265 Msa0039090:CDS
TTAGAATAGTACAGAACATT+GGG 0.411506 1_1:+68604246 None:intergenic
CCACTAACTCCCTTCACTTG+TGG 0.412556 1_1:+68599771 None:intergenic
CTGATTTGGCAAAGAAACTC+TGG 0.413553 1_1:-68599695 Msa0039090:CDS
CTGGACTTATTCGGAGTAGA+AGG 0.413845 1_1:+68602095 None:intergenic
TGGTCAAGGTGTTGCGGGGA+GGG 0.420611 1_1:-68603260 Msa0039090:CDS
GCGTTTGATTTGAATTCTCT+TGG 0.422058 1_1:-68602155 Msa0039090:CDS
TAAATGAGCATCTACGATAT+AGG 0.426423 1_1:+68603324 None:intergenic
AGATTGGTAACAATTGTTCC+TGG 0.426628 1_1:+68600806 None:intergenic
TTTGGTGAGGCATCGGGTCT+AGG 0.427870 1_1:+68602866 None:intergenic
GTTGATCCGATGTCTACCTT+AGG 0.428534 1_1:-68602776 Msa0039090:CDS
TACAGCAGATGGGGTGCATA+TGG 0.428773 1_1:-68601644 Msa0039090:CDS
CGTTTGATTTGAATTCTCTT+GGG 0.428827 1_1:-68602154 Msa0039090:CDS
CCTTGCAGGCAGTAAATTTG+AGG 0.428965 1_1:-68603881 Msa0039090:intron
ACCAAATATGGAGGAGGAGG+AGG 0.431488 1_1:-68602849 Msa0039090:CDS
TCCATATTTGGTGAGGCATC+GGG 0.432185 1_1:+68602860 None:intergenic
CTCCATCATGATCAGGAAGA+TGG 0.437998 1_1:-68600857 Msa0039090:intron
TCTTTCATCTGAGGCTCTGA+TGG 0.438903 1_1:+68602047 None:intergenic
CACATTAAATAAAATTAGTA+AGG 0.447105 1_1:+68599437 None:intergenic
CATGAACAGAAGACGCTGTT+GGG 0.447455 1_1:-68603049 Msa0039090:CDS
CCACAAGTGAAGGGAGTTAG+TGG 0.447541 1_1:-68599771 Msa0039090:CDS
GGATGGATATTGTGTAATCA+AGG 0.447561 1_1:-68604529 Msa0039090:CDS
TCAGGAAATGAACTAACAAT+TGG 0.451708 1_1:+68602119 None:intergenic
CCACAGAAAACATGTACATC+AGG 0.453576 1_1:+68604337 None:intergenic
CAGAGTCTTAACATTGCTGC+TGG 0.455084 1_1:-68602995 Msa0039090:CDS
TTGTTGTCGTCTTTCTCCAC+CGG 0.456133 1_1:+68604591 None:intergenic
AGGGCGTCAAAATGCATTAT+CGG 0.458489 1_1:-68603524 Msa0039090:CDS
CTGCAAGACAGATTACCCTT+TGG 0.463297 1_1:-68603191 Msa0039090:CDS
GGAGGAGGAGGGAGTACCAC+AGG 0.466897 1_1:-68602837 Msa0039090:CDS
AGCAAGGCTCGTTAAGCAAT+AGG 0.473057 1_1:-68602070 Msa0039090:CDS
GTCCTTGATCCGCATAGTAA+TGG 0.473816 1_1:-68604384 Msa0039090:CDS
TTAAATCAGATTTGCAATGA+AGG 0.476823 1_1:-68603544 Msa0039090:intron
CACCTGTGAGGAATGGTAAT+CGG 0.477678 1_1:-68604437 Msa0039090:CDS
GGAGAGAACGATGGAACTCT+AGG 0.477700 1_1:-68604312 Msa0039090:CDS
CAAACGCTCCTTCAGCGCCT+TGG 0.478043 1_1:+68602171 None:intergenic
CATGGGATTATTAGAGAGAA+AGG 0.478074 1_1:+68605407 None:intergenic
GATTCAAAAGTGATAAAGAT+TGG 0.478893 1_1:+68605584 None:intergenic
GAATTTATGTGTATGAATGT+AGG 0.479989 1_1:+68599405 None:intergenic
ATTATTGAAGCAACTGATGA+AGG 0.480520 1_1:-68602941 Msa0039090:CDS
CTTTGTACAGTTACAGCAGA+TGG 0.480627 1_1:-68601655 Msa0039090:intron
CCTTGAGATGCTTTGTAAGT+TGG 0.481616 1_1:+68601588 None:intergenic
GCTTAACGAGCCTTGCTGGC+TGG 0.482905 1_1:+68602076 None:intergenic
AAATCTTTGATAATGACATA+TGG 0.484963 1_1:-68599510 Msa0039090:three_prime_UTR
ATCTAGATTTAGAAACATCA+TGG 0.485801 1_1:-68605446 Msa0039090:CDS
GTAATCTGTCTTGCAGAACT+TGG 0.486621 1_1:+68603198 None:intergenic
GGTGTTGAACTCGAGGAAAA+TGG 0.487027 1_1:-68602974 Msa0039090:CDS
ATAAAATCAATGACGAATCA+AGG 0.490214 1_1:-68601755 Msa0039090:intron
CAGGTCTAATAAATGTGGTT+GGG 0.491530 1_1:-68600306 Msa0039090:CDS
AGAACATTGGGAGACCATTC+TGG 0.493005 1_1:+68604258 None:intergenic
TAAATCAGATTTGCAATGAA+GGG 0.493978 1_1:-68603543 Msa0039090:intron
TTCAGCAGAAACTACCAGAA+TGG 0.494743 1_1:-68604272 Msa0039090:CDS
ATTAGAATAGTACAGAACAT+TGG 0.496307 1_1:+68604245 None:intergenic
ACTGTTATGTCGGAAAAGAT+TGG 0.497151 1_1:+68600790 None:intergenic
CCTACAGGGAACCCATGTTT+GGG 0.498512 1_1:+68603450 None:intergenic
TGTAATGTTGAGCATGATCT+CGG 0.498840 1_1:+68604208 None:intergenic
TTTCCACGTTTCCTCTCTGA+GGG 0.500087 1_1:+68602734 None:intergenic
TGAACTGAATGTATTGGCTC+AGG 0.500170 1_1:-68604466 Msa0039090:CDS
TCCATCATGATCAGGAAGAT+GGG 0.501810 1_1:-68600856 Msa0039090:intron
CCACCAATAGAAAATTTGGA+TGG 0.502580 1_1:-68604546 Msa0039090:CDS
TTGAGCAATAGGAATAGATT+CGG 0.502794 1_1:+68602904 None:intergenic
AATTTATGTGTATGAATGTA+GGG 0.504808 1_1:+68599406 None:intergenic
AAAGTCCATAGAGGAGAAGA+AGG 0.508706 1_1:+68605351 None:intergenic
TTTGTACAGTTACAGCAGAT+GGG 0.509779 1_1:-68601654 Msa0039090:intron
TTGATCCGATGTCTACCTTA+GGG 0.513112 1_1:-68602775 Msa0039090:CDS
GCAGGTCTAATAAATGTGGT+TGG 0.514107 1_1:-68600307 Msa0039090:intron
TTACAACGTTCGTGGAACCT+TGG 0.514560 1_1:-68604190 Msa0039090:CDS
TGCAACGAAGGTTCAAATAC+AGG 0.517092 1_1:+68604162 None:intergenic
CAAAACACTCCTATGCCTAC+AGG 0.518113 1_1:+68603435 None:intergenic
ATTTACCTCTAGCCCAAACA+TGG 0.520347 1_1:-68603462 Msa0039090:CDS
GGAACCCATGTTTGGGCTAG+AGG 0.520691 1_1:+68603457 None:intergenic
AACAAACATACAGATTGTAA+TGG 0.521216 1_1:-68601994 Msa0039090:CDS
GTGTAGAACAATTTCAGCAA+AGG 0.522430 1_1:+68605613 None:intergenic
GATGCTGCAAAGAGCCTTGG+CGG 0.522654 1_1:-68602653 Msa0039090:intron
AATTCATTCTCTTTCATCTG+AGG 0.523018 1_1:+68602038 None:intergenic
CAGGATCCATCAGAGGTTCA+TGG 0.523226 1_1:-68602818 Msa0039090:CDS
GCTCAACATTACAACGTTCG+TGG 0.526984 1_1:-68604198 Msa0039090:CDS
GTCCATTACTATGCGGATCA+AGG 0.527800 1_1:+68604382 None:intergenic
ATGTTGAGCATGATCTCGGC+GGG 0.529020 1_1:+68604212 None:intergenic
AAAGATGCTGCAAAGAGCCT+TGG 0.531341 1_1:-68602656 Msa0039090:CDS
TCATGAACAGAAGACGCTGT+TGG 0.531663 1_1:-68603050 Msa0039090:CDS
CGCTTCGTTACTTCAAAGAG+TGG 0.532079 1_1:-68604491 Msa0039090:CDS
CCTTCGTTGCAGTCATGTAT+CGG 0.537757 1_1:-68604150 Msa0039090:CDS
GAATCTGTCCAAGGCGCTGA+AGG 0.539465 1_1:-68602179 Msa0039090:CDS
AGCGTATCTGCAGGCAGCAT+GGG 0.541320 1_1:-68602271 Msa0039090:CDS
CATGGGTTCCCTGTAGGCAT+AGG 0.542933 1_1:-68603444 Msa0039090:CDS
GAGGTTCATGGTGAAAATGT+AGG 0.543377 1_1:-68602806 Msa0039090:CDS
TGATTTGGCAAAGAAACTCT+GGG 0.543852 1_1:-68599694 Msa0039090:CDS
CCGATACATGACTGCAACGA+AGG 0.544335 1_1:+68604150 None:intergenic
CTCACCAAATATGGAGGAGG+AGG 0.544347 1_1:-68602852 Msa0039090:CDS
TAAAAGAAACTCAACCTCTA+GGG 0.545210 1_1:+68604059 None:intergenic
AACACGTTTGAGCTTAGATA+GGG 0.545296 1_1:+68602205 None:intergenic
ATCGTAGATGCTCATTTATG+GGG 0.545393 1_1:-68603319 Msa0039090:CDS
CTACAATGAAGCGTATCTGC+AGG 0.545803 1_1:-68602280 Msa0039090:CDS
GAGATGCTTTGTAAGTTGGT+TGG 0.546258 1_1:+68601592 None:intergenic
ACTGCAAATTCTCTTCATCC+AGG 0.546611 1_1:-68600824 Msa0039090:CDS
CGTTCACTGCACTGTTATGT+CGG 0.547282 1_1:+68600780 None:intergenic
GTGGACTGAACTGAATGTAT+TGG 0.548852 1_1:-68604472 Msa0039090:CDS
AGCATTGCACCCACAAGTGA+AGG 0.549189 1_1:-68599781 Msa0039090:CDS
ACAACATGGTCAAGGTGTTG+CGG 0.552963 1_1:-68603266 Msa0039090:CDS
AATCAGCGTCCCTTCCATGT+GGG 0.555356 1_1:+68599712 None:intergenic
GTAATGGAAAATCAATTGCT+AGG 0.555652 1_1:-68601978 Msa0039090:CDS
AAATTCAATAACTGAGAAGC+CGG 0.559695 1_1:-68604610 Msa0039090:CDS
CCGAATAAGTCCAGCCAGCA+AGG 0.559867 1_1:-68602086 Msa0039090:CDS
AAGCGTATCTGCAGGCAGCA+TGG 0.561590 1_1:-68602272 Msa0039090:CDS
CTCCTCCTCCATATTTGGTG+AGG 0.561991 1_1:+68602853 None:intergenic
GAGCTTATAGTTAATGTTTG+GGG 0.570044 1_1:-68599381 None:intergenic
TTATTCGGAGTAGAAGGCTC+AGG 0.570221 1_1:+68602101 None:intergenic
TCTATTGGTGGCAAAAGGGG+TGG 0.571210 1_1:+68604558 None:intergenic
ATGGTCAAGGTGTTGCGGGG+AGG 0.571632 1_1:-68603261 Msa0039090:CDS
TTCAAATACAGGCAAAGCCA+AGG 0.574356 1_1:+68604173 None:intergenic
ATGAGAGCATAATGAACCAA+AGG 0.574665 1_1:+68603175 None:intergenic
CTATGCGGATCAAGGACAAA+GGG 0.575242 1_1:+68604390 None:intergenic
CCCAAACATGGGTTCCCTGT+AGG 0.575392 1_1:-68603450 Msa0039090:CDS
AAAATACCTGAGTGAATGGA+TGG 0.576234 1_1:+68603841 None:intergenic
ACCTTGTTAATCTTTCGAGA+TGG 0.579070 1_1:+68602236 None:intergenic
CCAAATATGGAGGAGGAGGA+GGG 0.579152 1_1:-68602848 Msa0039090:CDS
TGAGAGCATAATGAACCAAA+GGG 0.580200 1_1:+68603176 None:intergenic
TTTGGACCATCCATTCACTC+AGG 0.581838 1_1:-68603847 Msa0039090:intron
CAAAACAACCCCACATGGAA+GGG 0.582561 1_1:-68599721 Msa0039090:CDS
CTCAGGTTTGGGCACCTGTG+AGG 0.583880 1_1:-68604449 Msa0039090:CDS
ACAAAACAACCCCACATGGA+AGG 0.586260 1_1:-68599722 Msa0039090:CDS
TGCCTCACCAAATATGGAGG+AGG 0.587748 1_1:-68602855 Msa0039090:CDS
GTTTGGGCACCTGTGAGGAA+TGG 0.588324 1_1:-68604444 Msa0039090:CDS
AAAACACTCCTATGCCTACA+GGG 0.592526 1_1:+68603436 None:intergenic
CACAGGTTCGCATATTCTGA+AGG 0.595062 1_1:-68601789 Msa0039090:CDS
AAAATCAATTGCTAGGAGGA+AGG 0.596853 1_1:-68601971 Msa0039090:CDS
ATCAGCGTCCCTTCCATGTG+GGG 0.601486 1_1:+68599713 None:intergenic
AGAAAGGACATGTGATCCAA+AGG 0.602206 1_1:+68605423 None:intergenic
TTATTCCCTAAGGTAGACAT+CGG 0.604395 1_1:+68602770 None:intergenic
AAATCAGCGTCCCTTCCATG+TGG 0.606536 1_1:+68599711 None:intergenic
TAGTAAGGATCCCATGCAGA+GGG 0.607626 1_1:+68599452 None:intergenic
TGCTGCTGGTGTTGAACTCG+AGG 0.610461 1_1:-68602981 Msa0039090:CDS
TTGTACAGTTACAGCAGATG+GGG 0.610557 1_1:-68601653 Msa0039090:intron
CGTGTTATTGAATCTGTCCA+AGG 0.611341 1_1:-68602188 Msa0039090:CDS
GTTTGAGCTTAGATAGGGAA+CGG 0.611978 1_1:+68602210 None:intergenic
GGCAGCATGGGATATCTCGT+TGG 0.612803 1_1:-68602259 Msa0039090:CDS
TCATGATCAGGAAGATGGGG+TGG 0.613846 1_1:-68600852 Msa0039090:intron
TCTTTGATAATGACATATGG+TGG 0.614329 1_1:-68599507 Msa0039090:three_prime_UTR
TCATGAAATTCAGTAATCCC+AGG 0.614579 1_1:+68603067 None:intergenic
CACAGAAAACATGTACATCA+GGG 0.616371 1_1:+68604338 None:intergenic
TAGCATTGACGAGTAACACT+TGG 0.618614 1_1:+68599634 None:intergenic
GCATTGCACCCACAAGTGAA+GGG 0.624705 1_1:-68599780 Msa0039090:CDS
CCATCAGTAAAAGTCCATAG+AGG 0.625976 1_1:+68605342 None:intergenic
TGAGTATGAACGTACCGCCA+AGG 0.628148 1_1:+68602639 None:intergenic
TACCGATTACCATTCCTCAC+AGG 0.629926 1_1:+68604435 None:intergenic
CCATCATGATCAGGAAGATG+GGG 0.633051 1_1:-68600855 Msa0039090:intron
AAAGATTAACTATGCTCCTG+AGG 0.633444 1_1:-68604100 Msa0039090:CDS
TTCAATAACTGAGAAGCCGG+TGG 0.635214 1_1:-68604607 Msa0039090:CDS
ACATACAAGAGAAGATCTTG+TGG 0.635928 1_1:+68605280 None:intergenic
CCAACTTACAAAGCATCTCA+AGG 0.636423 1_1:-68601588 Msa0039090:intron
GTGTACAAAACAACCCCACA+TGG 0.637066 1_1:-68599726 Msa0039090:CDS
TTATGCAGGTCTAATAAATG+TGG 0.639665 1_1:-68600311 Msa0039090:intron
AGATACGCTTCATTGTAGTA+GGG 0.641314 1_1:+68602285 None:intergenic
AGTGTGCATGTCTACAACTG+AGG 0.643299 1_1:-68603353 Msa0039090:CDS
CGACATAACAGTGCAGTGAA+CGG 0.644050 1_1:-68600779 Msa0039090:intron
ACTATGCGGATCAAGGACAA+AGG 0.647160 1_1:+68604389 None:intergenic
CGATGCCTCACCAAATATGG+AGG 0.650921 1_1:-68602858 Msa0039090:CDS
TTTACCTCTAGCCCAAACAT+GGG 0.653751 1_1:-68603461 Msa0039090:CDS
TGGACTCAATCAGTATAGAA+CGG 0.656345 1_1:-68604364 Msa0039090:CDS
GGTGAGGCATCGGGTCTAGG+TGG 0.659977 1_1:+68602869 None:intergenic
ATGGAAAATCAATTGCTAGG+AGG 0.664194 1_1:-68601975 Msa0039090:CDS
TTAGTAAGGATCCCATGCAG+AGG 0.665953 1_1:+68599451 None:intergenic
AAACCCTCAGAGAGGAAACG+TGG 0.667434 1_1:-68602737 Msa0039090:CDS
GTGCATGTCTACAACTGAGG+CGG 0.669875 1_1:-68603350 Msa0039090:CDS
AACATGGTCAAGGTGTTGCG+GGG 0.672343 1_1:-68603264 Msa0039090:CDS
GTCGAACATCACTTACAACA+TGG 0.677843 1_1:-68603280 Msa0039090:CDS
GATCTTAGAGATATTGACAG+TGG 0.683127 1_1:-68603500 Msa0039090:CDS
AAAACATCATTAGAAGAACA+TGG 0.686020 1_1:-68605486 Msa0039090:CDS
GCCATCTCGAAAGATTAACA+AGG 0.686233 1_1:-68602237 Msa0039090:CDS
AATGTTGAGCATGATCTCGG+CGG 0.687474 1_1:+68604211 None:intergenic
ATGGATAGATAAATGTGACA+AGG 0.692959 1_1:+68599541 None:intergenic
CATCACTTACAACATGGTCA+AGG 0.693887 1_1:-68603274 Msa0039090:CDS
TCTGTGGATGGAGAGAACGA+TGG 0.695263 1_1:-68604321 Msa0039090:CDS
AGTACCACAGGATCCATCAG+AGG 0.699060 1_1:-68602825 Msa0039090:CDS
ACATAAAGAAACCCTCAGAG+AGG 0.705928 1_1:-68602745 Msa0039090:CDS
TGAACCTCTGATGGATCCTG+TGG 0.708138 1_1:+68602821 None:intergenic
TGTTGAGCATGATCTCGGCG+GGG 0.718991 1_1:+68604213 None:intergenic
TGATTGAGTCCATTACTATG+CGG 0.743496 1_1:+68604375 None:intergenic
TGAAATTCAGTAATCCCAGG+AGG 0.744471 1_1:+68603070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTAGAGTTTAA+TGG - chr1_1:68601174-68601193 Msa0039090:intron 10.0%
!! GAATTATAAAATGTTAATAT+TGG + chr1_1:68602444-68602463 None:intergenic 10.0%
!!! AATAAAAAAACCAATTTTAA+AGG + chr1_1:68604605-68604624 None:intergenic 10.0%
!! TTAAATATTATTTAACCTAT+AGG - chr1_1:68605088-68605107 Msa0039090:intron 10.0%
!! ATAAACTCATTATACATTAA+GGG + chr1_1:68599913-68599932 None:intergenic 15.0%
!!! AACTGCATTTTAAAAATAAT+TGG - chr1_1:68601276-68601295 Msa0039090:intron 15.0%
!! TAAAAATAATTGGAAAATAC+TGG - chr1_1:68601286-68601305 Msa0039090:intron 15.0%
!! ATTAAATCTAATCATATCTT+TGG - chr1_1:68603923-68603942 Msa0039090:intron 15.0%
!! AATATACAACTAAAACAAAT+AGG + chr1_1:68604453-68604472 None:intergenic 15.0%
!! TACTAAAAAAAACTTATACA+AGG + chr1_1:68605117-68605136 None:intergenic 15.0%
!! CACATTAAATAAAATTAGTA+AGG + chr1_1:68605562-68605581 None:intergenic 15.0%
!! CATAAACTCATTATACATTA+AGG + chr1_1:68599914-68599933 None:intergenic 20.0%
!! ATAAGAAAACCATAAAACTT+AGG + chr1_1:68600977-68600996 None:intergenic 20.0%
!!! TTTTATGGTTTTCTTATGTT+TGG - chr1_1:68600980-68600999 Msa0039090:intron 20.0%
!!! ATTTTATACCAAGTTATCAA+TGG - chr1_1:68601034-68601053 Msa0039090:intron 20.0%
!!! TTATTTTTAGAGTTTAATGG+AGG - chr1_1:68601177-68601196 Msa0039090:intron 20.0%
!!! TTTAAAATGCAGTTACAAAT+AGG + chr1_1:68601270-68601289 None:intergenic 20.0%
!! ATACATGATAAAAACAAATC+AGG + chr1_1:68601343-68601362 None:intergenic 20.0%
!! AATTGCTTAAAATGTAATCA+AGG + chr1_1:68603297-68603316 None:intergenic 20.0%
!!! TTGATTACATTTTAAGCAAT+TGG - chr1_1:68603296-68603315 Msa0039090:CDS 20.0%
!!! GTTTTGGTTGATTAATAAAA+AGG - chr1_1:68603511-68603530 Msa0039090:CDS 20.0%
!! CAAATGATGATAATACAAAT+TGG + chr1_1:68604001-68604020 None:intergenic 20.0%
!! ATATCAAAGATAGATTAATG+TGG + chr1_1:68604105-68604124 None:intergenic 20.0%
!!! AATGTTGTCAAATAGTTTTT+GGG - chr1_1:68604783-68604802 Msa0039090:intron 20.0%
!! TTTCTAATACTTTCTTTCAT+AGG + chr1_1:68604872-68604891 None:intergenic 20.0%
!!! TACTCCAATTTTATTAATGT+AGG - chr1_1:68605170-68605189 Msa0039090:intron 20.0%
!!! ACTCCAATTTTATTAATGTA+GGG - chr1_1:68605171-68605190 Msa0039090:intron 20.0%
!!! ATCAAAGATTTTTCTTAGAA+TGG + chr1_1:68605477-68605496 None:intergenic 20.0%
!!! AAATCTTTGATAATGACATA+TGG - chr1_1:68605486-68605505 Msa0039090:CDS 20.0%
!! AAAAATATGACAGAAAATAG+AGG + chr1_1:68605524-68605543 None:intergenic 20.0%
!! AATTTATGTGTATGAATGTA+GGG + chr1_1:68605593-68605612 None:intergenic 20.0%
! GATTCAAAAGTGATAAAGAT+TGG + chr1_1:68599415-68599434 None:intergenic 25.0%
!!! TTCTGACATTTTTTTTCTCA+AGG + chr1_1:68599454-68599473 None:intergenic 25.0%
!!! TCTAATGATGTTTTTGTCTT+GGG + chr1_1:68599504-68599523 None:intergenic 25.0%
!!! TTCTAATGATGTTTTTGTCT+TGG + chr1_1:68599505-68599524 None:intergenic 25.0%
! AAAACATCATTAGAAGAACA+TGG - chr1_1:68599510-68599529 Msa0039090:three_prime_UTR 25.0%
! ATCTAGATTTAGAAACATCA+TGG - chr1_1:68599550-68599569 Msa0039090:three_prime_UTR 25.0%
! GAGATGTTTGAAAACAAAAA+AGG + chr1_1:68599618-68599637 None:intergenic 25.0%
! CAACATTCACAAGTAAAATT+AGG + chr1_1:68599941-68599960 None:intergenic 25.0%
!! CTAATTTTACTTGTGAATGT+TGG - chr1_1:68599939-68599958 Msa0039090:intron 25.0%
! AAATCTTCAAATACTGTAGT+AGG + chr1_1:68600013-68600032 None:intergenic 25.0%
! TGCCTAGTTAATTATTTAGA+AGG - chr1_1:68600044-68600063 Msa0039090:intron 25.0%
! GTCCTTCTAAATAATTAACT+AGG + chr1_1:68600049-68600068 None:intergenic 25.0%
!! TATCCATCCAAATTTTCTAT+TGG + chr1_1:68600456-68600475 None:intergenic 25.0%
! TTAGAATAGTACAGAACATT+GGG + chr1_1:68600753-68600772 None:intergenic 25.0%
! ATTAGAATAGTACAGAACAT+TGG + chr1_1:68600754-68600773 None:intergenic 25.0%
! AATAAAAATACCTGAGTGAA+TGG + chr1_1:68601162-68601181 None:intergenic 25.0%
! TTATCTAGATATAACAGACT+GGG + chr1_1:68601373-68601392 None:intergenic 25.0%
! ATTATCTAGATATAACAGAC+TGG + chr1_1:68601374-68601393 None:intergenic 25.0%
! TTAAATCAGATTTGCAATGA+AGG - chr1_1:68601452-68601471 Msa0039090:intron 25.0%
! TAAATCAGATTTGCAATGAA+GGG - chr1_1:68601453-68601472 Msa0039090:intron 25.0%
! GATTTAATAGATTGAGCAAT+AGG + chr1_1:68602106-68602125 None:intergenic 25.0%
!!! CTTTATGTTTTTATTCCCTA+AGG + chr1_1:68602239-68602258 None:intergenic 25.0%
! AACAAACATACAGATTGTAA+TGG - chr1_1:68603002-68603021 Msa0039090:CDS 25.0%
! AAAGAAGTGATTAATGGTAA+AGG - chr1_1:68603063-68603082 Msa0039090:CDS 25.0%
!!! CGTCATTGATTTTATCAAAA+CGG + chr1_1:68603236-68603255 None:intergenic 25.0%
! ATAAAATCAATGACGAATCA+AGG - chr1_1:68603241-68603260 Msa0039090:CDS 25.0%
! TACTTCTACTACATGTTATA+TGG - chr1_1:68603437-68603456 Msa0039090:CDS 25.0%
! TTAATAAAAAGGATGTCCTT+AGG - chr1_1:68603522-68603541 Msa0039090:CDS 25.0%
! CTTATTTCCATAAATTCTAC+AGG - chr1_1:68603708-68603727 Msa0039090:intron 25.0%
!! TTTCTCATTCTTGACTTTTT+GGG - chr1_1:68604030-68604049 Msa0039090:intron 25.0%
! TTATTCGTGTAAATTCACTT+TGG - chr1_1:68604254-68604273 Msa0039090:CDS 25.0%
! ATGTTGAATATGAATTATGC+AGG - chr1_1:68604278-68604297 Msa0039090:CDS 25.0%
!! TCCTTTACAATAACTTTTGA+TGG - chr1_1:68604407-68604426 Msa0039090:CDS 25.0%
! TCCATCAAAAGTTATTGTAA+AGG + chr1_1:68604411-68604430 None:intergenic 25.0%
! CTAAAACAAATAGGAGTTTA+TGG + chr1_1:68604444-68604463 None:intergenic 25.0%
! TATATTCTGTATTTAGCTGT+TGG - chr1_1:68604467-68604486 Msa0039090:CDS 25.0%
! TTTAGTGCTCTATATTACAA+TGG + chr1_1:68604555-68604574 None:intergenic 25.0%
!! CAATGTTGTCAAATAGTTTT+TGG - chr1_1:68604782-68604801 Msa0039090:intron 25.0%
! TCATAGGATAAAATTCATGT+AGG + chr1_1:68604856-68604875 None:intergenic 25.0%
! AATATAAGCAATATTGTTCG+AGG + chr1_1:68605035-68605054 None:intergenic 25.0%
! CGAACAATATTGCTTATATT+AGG - chr1_1:68605035-68605054 Msa0039090:intron 25.0%
! TTATATTAGGAGAAAACATG+TGG - chr1_1:68605048-68605067 Msa0039090:intron 25.0%
!! TTTAGTAGTGAATTTTGTTG+AGG - chr1_1:68605130-68605149 Msa0039090:intron 25.0%
! GAATTTATGTGTATGAATGT+AGG + chr1_1:68605594-68605613 None:intergenic 25.0%
! AAGTCTTGATTTTCTTCTTC+AGG + chr1_1:68599477-68599496 None:intergenic 30.0%
GAAAACAAAAAAGGTGACAT+GGG + chr1_1:68599609-68599628 None:intergenic 30.0%
TGAAAACAAAAAAGGTGACA+TGG + chr1_1:68599610-68599629 None:intergenic 30.0%
ATGTAGCATGTACTTGTATA+AGG + chr1_1:68600183-68600202 None:intergenic 30.0%
! CATGTATTTTGCAGTTTATG+TGG - chr1_1:68600317-68600336 Msa0039090:intron 30.0%
!! AACTAAAGCTACTGTTTTTC+AGG - chr1_1:68600357-68600376 Msa0039090:intron 30.0%
AAATTCAATAACTGAGAAGC+CGG - chr1_1:68600386-68600405 Msa0039090:intron 30.0%
!! ATTTTCTATTGGTGGCAAAA+GGG + chr1_1:68600445-68600464 None:intergenic 30.0%
!! AATTTTCTATTGGTGGCAAA+AGG + chr1_1:68600446-68600465 None:intergenic 30.0%
TTTGCCACCAATAGAAAATT+TGG - chr1_1:68600446-68600465 Msa0039090:intron 30.0%
TAAAAGAAACTCAACCTCTA+GGG + chr1_1:68600940-68600959 None:intergenic 30.0%
TTAAAAGAAACTCAACCTCT+AGG + chr1_1:68600941-68600960 None:intergenic 30.0%
! GCAATCTATCCTAAGTTTTA+TGG - chr1_1:68600965-68600984 Msa0039090:intron 30.0%
!! AAAAGTTGTTCGAGTTTTGA+TGG - chr1_1:68601605-68601624 Msa0039090:CDS 30.0%
TAAATGAGCATCTACGATAT+AGG + chr1_1:68601675-68601694 None:intergenic 30.0%
ATATCGTAGATGCTCATTTA+TGG - chr1_1:68601675-68601694 Msa0039090:intron 30.0%
TATCGTAGATGCTCATTTAT+GGG - chr1_1:68601676-68601695 Msa0039090:intron 30.0%
TTCATTATGCTCTCATGTTT+GGG - chr1_1:68601828-68601847 Msa0039090:intron 30.0%
CTGTTTCATTGTTGACAATA+TGG + chr1_1:68601975-68601994 None:intergenic 30.0%
ATTATTGAAGCAACTGATGA+AGG - chr1_1:68602055-68602074 Msa0039090:CDS 30.0%
TTGAGCAATAGGAATAGATT+CGG + chr1_1:68602095-68602114 None:intergenic 30.0%
!! TTCTACAACGTTATTTTGCT+GGG - chr1_1:68602311-68602330 Msa0039090:intron 30.0%
!! TTTACAAATTTGCTGCTATC+TGG - chr1_1:68602522-68602541 Msa0039090:intron 30.0%
CGATTACGTAATACATTCTT+TGG + chr1_1:68602561-68602580 None:intergenic 30.0%
!! TAGCTTTAACACAAACTTCT+TGG - chr1_1:68602665-68602684 Msa0039090:CDS 30.0%
!! CGTTTGATTTGAATTCTCTT+GGG - chr1_1:68602842-68602861 Msa0039090:CDS 30.0%
TCAGGAAATGAACTAACAAT+TGG + chr1_1:68602880-68602899 None:intergenic 30.0%
AATTCATTCTCTTTCATCTG+AGG + chr1_1:68602961-68602980 None:intergenic 30.0%
!! GTTTGTTTCTGATACTTTAG+AGG + chr1_1:68602989-68603008 None:intergenic 30.0%
! GTAATGGAAAATCAATTGCT+AGG - chr1_1:68603018-68603037 Msa0039090:CDS 30.0%
CTTGAGAAAGAAGTGATTAA+TGG - chr1_1:68603057-68603076 Msa0039090:CDS 30.0%
AAGCTATCCTGTAGAATTTA+TGG + chr1_1:68603718-68603737 None:intergenic 30.0%
! TCCCTTTTTCTAATAACAGT+CGG + chr1_1:68603961-68603980 None:intergenic 30.0%
! CTTTCTCATTCTTGACTTTT+TGG - chr1_1:68604029-68604048 Msa0039090:intron 30.0%
TTAATGTGGAAAAACCAAAC+TGG + chr1_1:68604091-68604110 None:intergenic 30.0%
ATATGAATTATGCAGGTCAA+AGG - chr1_1:68604285-68604304 Msa0039090:CDS 30.0%
!! TGAGTTTTATGAATGTTAGC+TGG - chr1_1:68604656-68604675 Msa0039090:intron 30.0%
TTATGCAGGTCTAATAAATG+TGG - chr1_1:68604685-68604704 Msa0039090:intron 30.0%
AGTTAAATCAGTATGTCCTA+TGG - chr1_1:68604743-68604762 Msa0039090:intron 30.0%
TCTCTGACATTTATAACCAT+AGG + chr1_1:68604762-68604781 None:intergenic 30.0%
!! TGTCAAATAGTTTTTGGGAA+TGG - chr1_1:68604788-68604807 Msa0039090:intron 30.0%
! TCCTTATTCCAATTGTTGTT+GGG - chr1_1:68604920-68604939 Msa0039090:intron 30.0%
ACTTATACAAGGAATCCTAT+AGG + chr1_1:68605106-68605125 None:intergenic 30.0%
GCTCCCTACATTAATAAAAT+TGG + chr1_1:68605177-68605196 None:intergenic 30.0%
ATGGATAGATAAATGTGACA+AGG + chr1_1:68605458-68605477 None:intergenic 30.0%
!! TCTTTGATAATGACATATGG+TGG - chr1_1:68605489-68605508 Msa0039090:CDS 30.0%
TTTCTCAAGGTTCTGTTTGT+GGG + chr1_1:68599441-68599460 None:intergenic 35.0%
! TTTTCTCAAGGTTCTGTTTG+TGG + chr1_1:68599442-68599461 None:intergenic 35.0%
!! AATGATGTTTTTGTCTTGGG+AGG + chr1_1:68599501-68599520 None:intergenic 35.0%
AGAAGAACATGGTTGTTCTA+TGG - chr1_1:68599521-68599540 Msa0039090:three_prime_UTR 35.0%
TTTAGAAACATCATGGCCTT+TGG - chr1_1:68599557-68599576 Msa0039090:three_prime_UTR 35.0%
CATGGGATTATTAGAGAGAA+AGG + chr1_1:68599592-68599611 None:intergenic 35.0%
ACATACAAGAGAAGATCTTG+TGG + chr1_1:68599719-68599738 None:intergenic 35.0%
CAGCTGTTCAATTTAGAAGA+GGG + chr1_1:68600105-68600124 None:intergenic 35.0%
TCAGCTGTTCAATTTAGAAG+AGG + chr1_1:68600106-68600125 None:intergenic 35.0%
ATTGAACAGCTGAAGTTTCA+TGG - chr1_1:68600113-68600132 Msa0039090:intron 35.0%
TAATCTAGTCCAATGTCATG+TGG - chr1_1:68600287-68600306 Msa0039090:CDS 35.0%
!! TTTTCTATTGGTGGCAAAAG+GGG + chr1_1:68600444-68600463 None:intergenic 35.0%
! CCATCCAAATTTTCTATTGG+TGG + chr1_1:68600453-68600472 None:intergenic 35.0%
CCACCAATAGAAAATTTGGA+TGG - chr1_1:68600450-68600469 Msa0039090:intron 35.0%
GGATGGATATTGTGTAATCA+AGG - chr1_1:68600467-68600486 Msa0039090:intron 35.0%
TGATTGAGTCCATTACTATG+CGG + chr1_1:68600624-68600643 None:intergenic 35.0%
TGGACTCAATCAGTATAGAA+CGG - chr1_1:68600632-68600651 Msa0039090:intron 35.0%
CACAGAAAACATGTACATCA+GGG + chr1_1:68600661-68600680 None:intergenic 35.0%
! ATGTACATGTTTTCTGTGGA+TGG - chr1_1:68600663-68600682 Msa0039090:intron 35.0%
TGTAATGTTGAGCATGATCT+CGG + chr1_1:68600791-68600810 None:intergenic 35.0%
AAAGATTAACTATGCTCCTG+AGG - chr1_1:68600896-68600915 Msa0039090:intron 35.0%
!!! TTGCAGATTTTTTCAACCTC+AGG + chr1_1:68600915-68600934 None:intergenic 35.0%
! AATCTCTGCCATTGATAACT+TGG + chr1_1:68601045-68601064 None:intergenic 35.0%
! ATTCCTCAATGATCTGCTTT+TGG - chr1_1:68601089-68601108 Msa0039090:intron 35.0%
AAACCAAAAGCAGATCATTG+AGG + chr1_1:68601095-68601114 None:intergenic 35.0%
AAAATACCTGAGTGAATGGA+TGG + chr1_1:68601158-68601177 None:intergenic 35.0%
GGAAAATACTGGATTCTCAT+TGG - chr1_1:68601297-68601316 Msa0039090:intron 35.0%
CATTGCCAAGTTATATCTGT+GGG + chr1_1:68601429-68601448 None:intergenic 35.0%
GATCTTAGAGATATTGACAG+TGG - chr1_1:68601496-68601515 Msa0039090:intron 35.0%
!! AGTTTTGATGGTAGTTGCAT+GGG - chr1_1:68601617-68601636 Msa0039090:CDS 35.0%
ATCGTAGATGCTCATTTATG+GGG - chr1_1:68601677-68601696 Msa0039090:intron 35.0%
! TGAGAGCATAATGAACCAAA+GGG + chr1_1:68601823-68601842 None:intergenic 35.0%
! ATGAGAGCATAATGAACCAA+AGG + chr1_1:68601824-68601843 None:intergenic 35.0%
GTTCATTATGCTCTCATGTT+TGG - chr1_1:68601827-68601846 Msa0039090:intron 35.0%
TCATGAAATTCAGTAATCCC+AGG + chr1_1:68601932-68601951 None:intergenic 35.0%
TTATTCCCTAAGGTAGACAT+CGG + chr1_1:68602229-68602248 None:intergenic 35.0%
!! GTTCTACAACGTTATTTTGC+TGG - chr1_1:68602310-68602329 Msa0039090:intron 35.0%
TTTATTAATCTGCTGCTAGC+TGG - chr1_1:68602406-68602425 Msa0039090:intron 35.0%
! CTACAATGAAGTGCATCTTT+TGG - chr1_1:68602489-68602508 Msa0039090:intron 35.0%
AGATACGCTTCATTGTAGTA+GGG + chr1_1:68602714-68602733 None:intergenic 35.0%
ACCTTGTTAATCTTTCGAGA+TGG + chr1_1:68602763-68602782 None:intergenic 35.0%
AACACGTTTGAGCTTAGATA+GGG + chr1_1:68602794-68602813 None:intergenic 35.0%
TAACACGTTTGAGCTTAGAT+AGG + chr1_1:68602795-68602814 None:intergenic 35.0%
!! GCGTTTGATTTGAATTCTCT+TGG - chr1_1:68602841-68602860 Msa0039090:CDS 35.0%
ATGGAAAATCAATTGCTAGG+AGG - chr1_1:68603021-68603040 Msa0039090:CDS 35.0%
AAAATCAATTGCTAGGAGGA+AGG - chr1_1:68603025-68603044 Msa0039090:CDS 35.0%
TTTGTACAGTTACAGCAGAT+GGG - chr1_1:68603342-68603361 Msa0039090:CDS 35.0%
CCAAAACATTAAGACAAGTG+AGG + chr1_1:68603498-68603517 None:intergenic 35.0%
! CCTCACTTGTCTTAATGTTT+TGG - chr1_1:68603495-68603514 Msa0039090:CDS 35.0%
TAAAAAGGATGTCCTTAGGT+AGG - chr1_1:68603526-68603545 Msa0039090:CDS 35.0%
AAAGAACACATACCTACCTA+AGG + chr1_1:68603541-68603560 None:intergenic 35.0%
!! CAATGTCGCTAAGTTGTTTT+TGG - chr1_1:68603685-68603704 Msa0039090:intron 35.0%
! TGCCGACTGTTATTAGAAAA+AGG - chr1_1:68603956-68603975 Msa0039090:intron 35.0%
GCCGACTGTTATTAGAAAAA+GGG - chr1_1:68603957-68603976 Msa0039090:intron 35.0%
GACTGTTATTAGAAAAAGGG+AGG - chr1_1:68603960-68603979 Msa0039090:intron 35.0%
TGTGAGTAAATATGCCAGTT+TGG - chr1_1:68604074-68604093 Msa0039090:CDS 35.0%
ATTACTTCTCCATCATGATC+AGG - chr1_1:68604132-68604151 Msa0039090:CDS 35.0%
! AGATTGGTAACAATTGTTCC+TGG + chr1_1:68604193-68604212 None:intergenic 35.0%
ACTGTTATGTCGGAAAAGAT+TGG + chr1_1:68604209-68604228 None:intergenic 35.0%
ATTATGCAGGTCAAAGGATT+TGG - chr1_1:68604291-68604310 Msa0039090:CDS 35.0%
AGGATTTGGATGAATTATGC+AGG - chr1_1:68604305-68604324 Msa0039090:CDS 35.0%
ATTATGCAGGTGATAGGATT+TGG - chr1_1:68604318-68604337 Msa0039090:CDS 35.0%
ATTACAATGGTCATTCTGAG+TGG + chr1_1:68604542-68604561 None:intergenic 35.0%
!! CACTCACAAGCCTTTAAAAT+TGG - chr1_1:68604592-68604611 Msa0039090:CDS 35.0%
!!! TTAGCTGGTTTGTTTTATGC+AGG - chr1_1:68604671-68604690 Msa0039090:intron 35.0%
CAGGTCTAATAAATGTGGTT+GGG - chr1_1:68604690-68604709 Msa0039090:intron 35.0%
!! TACTGATTTAACTTACCTGC+TGG + chr1_1:68604736-68604755 None:intergenic 35.0%
! GGAATGGATCCCATTATTTT+GGG - chr1_1:68604804-68604823 Msa0039090:intron 35.0%
GGATCCATTCCCAAAATAAT+GGG + chr1_1:68604816-68604835 None:intergenic 35.0%
! TAGGTCTCACCATTTTATGT+GGG + chr1_1:68604837-68604856 None:intergenic 35.0%
GTCCTTATTCCAATTGTTGT+TGG - chr1_1:68604919-68604938 Msa0039090:intron 35.0%
ACCCAACAACAATTGGAATA+AGG + chr1_1:68604924-68604943 None:intergenic 35.0%
! TGATTTGGCAAAGAAACTCT+GGG - chr1_1:68605302-68605321 Msa0039090:CDS 35.0%
! TCATATTTTTCCCTCTGCAT+GGG - chr1_1:68605534-68605553 Msa0039090:CDS 35.0%
AGAAAGGACATGTGATCCAA+AGG + chr1_1:68599576-68599595 None:intergenic 40.0%
ATCAACCTTCTTCTCCTCTA+TGG - chr1_1:68599640-68599659 Msa0039090:three_prime_UTR 40.0%
AAAGTCCATAGAGGAGAAGA+AGG + chr1_1:68599648-68599667 None:intergenic 40.0%
CCATCAGTAAAAGTCCATAG+AGG + chr1_1:68599657-68599676 None:intergenic 40.0%
! CCTCTATGGACTTTTACTGA+TGG - chr1_1:68599654-68599673 Msa0039090:exon 40.0%
TTGCCTGGTAATTGCTTTCT+TGG - chr1_1:68600150-68600169 Msa0039090:intron 40.0%
TGCCTGGTAATTGCTTTCTT+GGG - chr1_1:68600151-68600170 Msa0039090:intron 40.0%
! GTGGACTGAACTGAATGTAT+TGG - chr1_1:68600524-68600543 Msa0039090:intron 40.0%
!! TGAACTGAATGTATTGGCTC+AGG - chr1_1:68600530-68600549 Msa0039090:intron 40.0%
!! TGAATGTATTGGCTCAGGTT+TGG - chr1_1:68600535-68600554 Msa0039090:intron 40.0%
!! GAATGTATTGGCTCAGGTTT+GGG - chr1_1:68600536-68600555 Msa0039090:intron 40.0%
CGGTATGTACTTACAACTTC+AGG - chr1_1:68600579-68600598 Msa0039090:intron 40.0%
CCACAGAAAACATGTACATC+AGG + chr1_1:68600662-68600681 None:intergenic 40.0%
! CCTGATGTACATGTTTTCTG+TGG - chr1_1:68600659-68600678 Msa0039090:intron 40.0%
TTCAGCAGAAACTACCAGAA+TGG - chr1_1:68600724-68600743 Msa0039090:intron 40.0%
TTCAAATACAGGCAAAGCCA+AGG + chr1_1:68600826-68600845 None:intergenic 40.0%
TGCAACGAAGGTTCAAATAC+AGG + chr1_1:68600837-68600856 None:intergenic 40.0%
AAAAATCTGCAAAGCCCTAG+AGG - chr1_1:68600923-68600942 Msa0039090:intron 40.0%
! TTTGAGGAGCTCAGAGTTTT+TGG - chr1_1:68601131-68601150 Msa0039090:intron 40.0%
CAAGTGTGAATCATTGTCAC+TGG + chr1_1:68601238-68601257 None:intergenic 40.0%
ACTGGATTCTCATTGGATGT+TGG - chr1_1:68601304-68601323 Msa0039090:intron 40.0%
TTATATCTGTGGGAATCCAG+GGG + chr1_1:68601419-68601438 None:intergenic 40.0%
GTTATATCTGTGGGAATCCA+GGG + chr1_1:68601420-68601439 None:intergenic 40.0%
AGTTATATCTGTGGGAATCC+AGG + chr1_1:68601421-68601440 None:intergenic 40.0%
GGATTCCCACAGATATAACT+TGG - chr1_1:68601421-68601440 Msa0039090:intron 40.0%
GCATTGCCAAGTTATATCTG+TGG + chr1_1:68601430-68601449 None:intergenic 40.0%
! AGGGCGTCAAAATGCATTAT+CGG - chr1_1:68601472-68601491 Msa0039090:intron 40.0%
ATTTACCTCTAGCCCAAACA+TGG - chr1_1:68601534-68601553 Msa0039090:intron 40.0%
TTTACCTCTAGCCCAAACAT+GGG - chr1_1:68601535-68601554 Msa0039090:intron 40.0%
AAAACACTCCTATGCCTACA+GGG + chr1_1:68601563-68601582 None:intergenic 40.0%
!! GAGTTTTGATGGTAGTTGCA+TGG - chr1_1:68601616-68601635 Msa0039090:CDS 40.0%
!! GTTTTGATGGTAGTTGCATG+GGG - chr1_1:68601618-68601637 Msa0039090:CDS 40.0%
GTCGAACATCACTTACAACA+TGG - chr1_1:68601716-68601735 Msa0039090:intron 40.0%
CATCACTTACAACATGGTCA+AGG - chr1_1:68601722-68601741 Msa0039090:intron 40.0%
GTAATCTGTCTTGCAGAACT+TGG + chr1_1:68601801-68601820 None:intergenic 40.0%
!!! TTAGAGTTTTTTCTGCCTCC+TGG - chr1_1:68601911-68601930 Msa0039090:intron 40.0%
!!! TAGAGTTTTTTCTGCCTCCT+GGG - chr1_1:68601912-68601931 Msa0039090:intron 40.0%
TGAAATTCAGTAATCCCAGG+AGG + chr1_1:68601929-68601948 None:intergenic 40.0%
! TTTTCACCATGAACCTCTGA+TGG + chr1_1:68602187-68602206 None:intergenic 40.0%
GAGGTTCATGGTGAAAATGT+AGG - chr1_1:68602190-68602209 Msa0039090:CDS 40.0%
TTGATCCGATGTCTACCTTA+GGG - chr1_1:68602221-68602240 Msa0039090:CDS 40.0%
ACATAAAGAAACCCTCAGAG+AGG - chr1_1:68602251-68602270 Msa0039090:CDS 40.0%
CAGATACGCTTCATTGTAGT+AGG + chr1_1:68602715-68602734 None:intergenic 40.0%
GCCATCTCGAAAGATTAACA+AGG - chr1_1:68602759-68602778 Msa0039090:CDS 40.0%
GTTTGAGCTTAGATAGGGAA+CGG + chr1_1:68602789-68602808 None:intergenic 40.0%
! CGTGTTATTGAATCTGTCCA+AGG - chr1_1:68602808-68602827 Msa0039090:CDS 40.0%
TCTGCTGTAACTGTACAAAG+AGG + chr1_1:68603341-68603360 None:intergenic 40.0%
CTTTGTACAGTTACAGCAGA+TGG - chr1_1:68603341-68603360 Msa0039090:CDS 40.0%
TTGTACAGTTACAGCAGATG+GGG - chr1_1:68603343-68603362 Msa0039090:CDS 40.0%
!! GAGATGCTTTGTAAGTTGGT+TGG + chr1_1:68603407-68603426 None:intergenic 40.0%
CCTTGAGATGCTTTGTAAGT+TGG + chr1_1:68603411-68603430 None:intergenic 40.0%
! CCAACTTACAAAGCATCTCA+AGG - chr1_1:68603408-68603427 Msa0039090:CDS 40.0%
! TCCCTTGAGCTTTTATCAGT+TGG - chr1_1:68603565-68603584 Msa0039090:intron 40.0%
GCCAACTGATAAAAGCTCAA+GGG + chr1_1:68603569-68603588 None:intergenic 40.0%
AGCCAACTGATAAAAGCTCA+AGG + chr1_1:68603570-68603589 None:intergenic 40.0%
AGACTATAGCATGACCTCTT+TGG - chr1_1:68603621-68603640 Msa0039090:intron 40.0%
AACAGACCATAAAGCCAAAG+AGG + chr1_1:68603638-68603657 None:intergenic 40.0%
!! CTTTGGCTTTATGGTCTGTT+TGG - chr1_1:68603638-68603657 Msa0039090:intron 40.0%
!! CTCATTCTTGACTTTTTGGG+TGG - chr1_1:68604033-68604052 Msa0039090:intron 40.0%
TCCATCATGATCAGGAAGAT+GGG - chr1_1:68604140-68604159 Msa0039090:CDS 40.0%
ACTGCAAATTCTCTTCATCC+AGG - chr1_1:68604172-68604191 Msa0039090:CDS 40.0%
GGATGAATTATGCAGGTGAT+AGG - chr1_1:68604312-68604331 Msa0039090:CDS 40.0%
GCAGGTCTAATAAATGTGGT+TGG - chr1_1:68604689-68604708 Msa0039090:intron 40.0%
TGTGATGAAAAATGTCCAGC+AGG - chr1_1:68604718-68604737 Msa0039090:intron 40.0%
! GGGAATGGATCCCATTATTT+TGG - chr1_1:68604803-68604822 Msa0039090:intron 40.0%
!!! GGATCCCATTATTTTGGGAA+TGG - chr1_1:68604809-68604828 Msa0039090:intron 40.0%
GGGATCCATTCCCAAAATAA+TGG + chr1_1:68604817-68604836 None:intergenic 40.0%
GGAATGGATCCCACATAAAA+TGG - chr1_1:68604825-68604844 Msa0039090:intron 40.0%
! GTAGGTCTCACCATTTTATG+TGG + chr1_1:68604838-68604857 None:intergenic 40.0%
! TGCGATTCTCTTTGTTGTGA+GGG + chr1_1:68604964-68604983 None:intergenic 40.0%
!! CTGATTTGGCAAAGAAACTC+TGG - chr1_1:68605301-68605320 Msa0039090:CDS 40.0%
CTGGGATTTCAGCATCAATT+TGG - chr1_1:68605320-68605339 Msa0039090:CDS 40.0%
!! TAGCATTGACGAGTAACACT+TGG + chr1_1:68605365-68605384 None:intergenic 40.0%
! GTCATATTTTTCCCTCTGCA+TGG - chr1_1:68605533-68605552 Msa0039090:CDS 40.0%
GAAAGCTGAAGCTGCAAGTT+TGG + chr1_1:68599688-68599707 None:intergenic 45.0%
GCTGAAGTTTCATGGCTTCA+TGG - chr1_1:68600121-68600140 Msa0039090:intron 45.0%
AGCCCAAGAAAGCAATTACC+AGG + chr1_1:68600156-68600175 None:intergenic 45.0%
TGTACAGCACCACATGACAT+TGG + chr1_1:68600299-68600318 None:intergenic 45.0%
TTCAATAACTGAGAAGCCGG+TGG - chr1_1:68600389-68600408 Msa0039090:intron 45.0%
TTGTTGTCGTCTTTCTCCAC+CGG + chr1_1:68600408-68600427 None:intergenic 45.0%
CGCTTCGTTACTTCAAAGAG+TGG - chr1_1:68600505-68600524 Msa0039090:intron 45.0%
CACCTGTGAGGAATGGTAAT+CGG - chr1_1:68600559-68600578 Msa0039090:intron 45.0%
! TACCGATTACCATTCCTCAC+AGG + chr1_1:68600564-68600583 None:intergenic 45.0%
CTATGCGGATCAAGGACAAA+GGG + chr1_1:68600609-68600628 None:intergenic 45.0%
ACTATGCGGATCAAGGACAA+AGG + chr1_1:68600610-68600629 None:intergenic 45.0%
GTCCTTGATCCGCATAGTAA+TGG - chr1_1:68600612-68600631 Msa0039090:intron 45.0%
GTCCATTACTATGCGGATCA+AGG + chr1_1:68600617-68600636 None:intergenic 45.0%
TTCTGCTGAAAAACTCGACC+AGG + chr1_1:68600714-68600733 None:intergenic 45.0%
AGAACATTGGGAGACCATTC+TGG + chr1_1:68600741-68600760 None:intergenic 45.0%
AATGTTGAGCATGATCTCGG+CGG + chr1_1:68600788-68600807 None:intergenic 45.0%
GCTCAACATTACAACGTTCG+TGG - chr1_1:68600798-68600817 Msa0039090:CDS 45.0%
TTACAACGTTCGTGGAACCT+TGG - chr1_1:68600806-68600825 Msa0039090:CDS 45.0%
CCTTCGTTGCAGTCATGTAT+CGG - chr1_1:68600846-68600865 Msa0039090:intron 45.0%
!!! TCTGCTTTTGGTTTCCTTGC+AGG - chr1_1:68601101-68601120 Msa0039090:intron 45.0%
CCTCAAATTTACTGCCTGCA+AGG + chr1_1:68601118-68601137 None:intergenic 45.0%
CCTTGCAGGCAGTAAATTTG+AGG - chr1_1:68601115-68601134 Msa0039090:intron 45.0%
TTTGGACCATCCATTCACTC+AGG - chr1_1:68601149-68601168 Msa0039090:intron 45.0%
ATTGTTCTATCGCTTACCCC+TGG - chr1_1:68601400-68601419 Msa0039090:intron 45.0%
CAAAACACTCCTATGCCTAC+AGG + chr1_1:68601564-68601583 None:intergenic 45.0%
!!! CTGTAGGCATAGGAGTGTTT+TGG - chr1_1:68601562-68601581 Msa0039090:intron 45.0%
!!! CATAGGAGTGTTTTGGCTCA+TGG - chr1_1:68601569-68601588 Msa0039090:intron 45.0%
AGTGTGCATGTCTACAACTG+AGG - chr1_1:68601643-68601662 Msa0039090:CDS 45.0%
!! ACAACATGGTCAAGGTGTTG+CGG - chr1_1:68601730-68601749 Msa0039090:intron 45.0%
CTGCAAGACAGATTACCCTT+TGG - chr1_1:68601805-68601824 Msa0039090:intron 45.0%
!! GCTGTTTTGCAATCTGTCTG+CGG - chr1_1:68601858-68601877 Msa0039090:intron 45.0%
! TGTCTGCGGAGTTTTCATAC+AGG - chr1_1:68601872-68601891 Msa0039090:intron 45.0%
TCATGAACAGAAGACGCTGT+TGG - chr1_1:68601946-68601965 Msa0039090:CDS 45.0%
CATGAACAGAAGACGCTGTT+GGG - chr1_1:68601947-68601966 Msa0039090:CDS 45.0%
CAGAGTCTTAACATTGCTGC+TGG - chr1_1:68602001-68602020 Msa0039090:CDS 45.0%
! GGTGTTGAACTCGAGGAAAA+TGG - chr1_1:68602022-68602041 Msa0039090:CDS 45.0%
! TCCATATTTGGTGAGGCATC+GGG + chr1_1:68602139-68602158 None:intergenic 45.0%
! CTCCATATTTGGTGAGGCAT+CGG + chr1_1:68602140-68602159 None:intergenic 45.0%
GTTGATCCGATGTCTACCTT+AGG - chr1_1:68602220-68602239 Msa0039090:CDS 45.0%
TTTCCACGTTTCCTCTCTGA+GGG + chr1_1:68602265-68602284 None:intergenic 45.0%
! TTTTCCACGTTTCCTCTCTG+AGG + chr1_1:68602266-68602285 None:intergenic 45.0%
AAAGATGCTGCAAAGAGCCT+TGG - chr1_1:68602340-68602359 Msa0039090:intron 45.0%
CTACAATGAAGCGTATCTGC+AGG - chr1_1:68602716-68602735 Msa0039090:CDS 45.0%
TTATTCGGAGTAGAAGGCTC+AGG + chr1_1:68602898-68602917 None:intergenic 45.0%
CTGGACTTATTCGGAGTAGA+AGG + chr1_1:68602904-68602923 None:intergenic 45.0%
TATTGCTTAACGAGCCTTGC+TGG + chr1_1:68602927-68602946 None:intergenic 45.0%
AGCAAGGCTCGTTAAGCAAT+AGG - chr1_1:68602926-68602945 Msa0039090:CDS 45.0%
! TCTTTCATCTGAGGCTCTGA+TGG + chr1_1:68602952-68602971 None:intergenic 45.0%
CACAGGTTCGCATATTCTGA+AGG - chr1_1:68603207-68603226 Msa0039090:CDS 45.0%
!! GCATGACCTCTTTGGCTTTA+TGG - chr1_1:68603629-68603648 Msa0039090:intron 45.0%
AGAAAAAGGGAGGTGATTCG+TGG - chr1_1:68603970-68603989 Msa0039090:intron 45.0%
CTCCATCATGATCAGGAAGA+TGG - chr1_1:68604139-68604158 Msa0039090:CDS 45.0%
CCATCATGATCAGGAAGATG+GGG - chr1_1:68604141-68604160 Msa0039090:CDS 45.0%
CGTTCACTGCACTGTTATGT+CGG + chr1_1:68604219-68604238 None:intergenic 45.0%
CGACATAACAGTGCAGTGAA+CGG - chr1_1:68604217-68604236 Msa0039090:CDS 45.0%
TGGTCATTCTGAGTGGTCAT+TGG + chr1_1:68604535-68604554 None:intergenic 45.0%
! CCAATTGTTGTTGGGTCTAG+CGG - chr1_1:68604928-68604947 Msa0039090:intron 45.0%
! CTGCGATTCTCTTTGTTGTG+AGG + chr1_1:68604965-68604984 None:intergenic 45.0%
CACTAACTCCCTTCACTTGT+GGG + chr1_1:68605227-68605246 None:intergenic 45.0%
GTGTACAAAACAACCCCACA+TGG - chr1_1:68605270-68605289 Msa0039090:intron 45.0%
ACAAAACAACCCCACATGGA+AGG - chr1_1:68605274-68605293 Msa0039090:intron 45.0%
CAAAACAACCCCACATGGAA+GGG - chr1_1:68605275-68605294 Msa0039090:intron 45.0%
TAGTAAGGATCCCATGCAGA+GGG + chr1_1:68605547-68605566 None:intergenic 45.0%
TTAGTAAGGATCCCATGCAG+AGG + chr1_1:68605548-68605567 None:intergenic 45.0%
!!! TTTTCTTTTTAATTAAAAAA+TGG + chr1_1:68599977-68599996 None:intergenic 5.0%
!!! ATAATATTTAAGTTTTTTTT+AGG + chr1_1:68605079-68605098 None:intergenic 5.0%
! TCTATTGGTGGCAAAAGGGG+TGG + chr1_1:68600441-68600460 None:intergenic 50.0%
TCTGTGGATGGAGAGAACGA+TGG - chr1_1:68600675-68600694 Msa0039090:intron 50.0%
GGAGAGAACGATGGAACTCT+AGG - chr1_1:68600684-68600703 Msa0039090:intron 50.0%
GCTGAAAAACTCGACCAGGA+AGG + chr1_1:68600710-68600729 None:intergenic 50.0%
ATGTTGAGCATGATCTCGGC+GGG + chr1_1:68600787-68600806 None:intergenic 50.0%
CCGATACATGACTGCAACGA+AGG + chr1_1:68600849-68600868 None:intergenic 50.0%
CCTACAGGGAACCCATGTTT+GGG + chr1_1:68601549-68601568 None:intergenic 50.0%
!!! AGGAGTGTTTTGGCTCATGG+TGG - chr1_1:68601572-68601591 Msa0039090:intron 50.0%
!!! AGTGTTTTGGCTCATGGTGG+CGG - chr1_1:68601575-68601594 Msa0039090:intron 50.0%
GTGCATGTCTACAACTGAGG+CGG - chr1_1:68601646-68601665 Msa0039090:CDS 50.0%
!! CAACATGGTCAAGGTGTTGC+GGG - chr1_1:68601731-68601750 Msa0039090:intron 50.0%
!! AACATGGTCAAGGTGTTGCG+GGG - chr1_1:68601732-68601751 Msa0039090:intron 50.0%
ACCCGATGCCTCACCAAATA+TGG - chr1_1:68602135-68602154 Msa0039090:CDS 50.0%
CGATGCCTCACCAAATATGG+AGG - chr1_1:68602138-68602157 Msa0039090:CDS 50.0%
TGCCTCACCAAATATGGAGG+AGG - chr1_1:68602141-68602160 Msa0039090:CDS 50.0%
! CTCCTCCTCCATATTTGGTG+AGG + chr1_1:68602146-68602165 None:intergenic 50.0%
CTCACCAAATATGGAGGAGG+AGG - chr1_1:68602144-68602163 Msa0039090:CDS 50.0%
ACCAAATATGGAGGAGGAGG+AGG - chr1_1:68602147-68602166 Msa0039090:CDS 50.0%
CCAAATATGGAGGAGGAGGA+GGG - chr1_1:68602148-68602167 Msa0039090:CDS 50.0%
AGTACCACAGGATCCATCAG+AGG - chr1_1:68602171-68602190 Msa0039090:CDS 50.0%
! TGAACCTCTGATGGATCCTG+TGG + chr1_1:68602178-68602197 None:intergenic 50.0%
CAGGATCCATCAGAGGTTCA+TGG - chr1_1:68602178-68602197 Msa0039090:CDS 50.0%
AAACCCTCAGAGAGGAAACG+TGG - chr1_1:68602259-68602278 Msa0039090:CDS 50.0%
TGAGTATGAACGTACCGCCA+AGG + chr1_1:68602360-68602379 None:intergenic 50.0%
! CCTTGCTGGCTGGACTTATT+CGG + chr1_1:68602913-68602932 None:intergenic 50.0%
TACAGCAGATGGGGTGCATA+TGG - chr1_1:68603352-68603371 Msa0039090:CDS 50.0%
CCCCATCTTCCTGATCATGA+TGG + chr1_1:68604144-68604163 None:intergenic 50.0%
TCATGATCAGGAAGATGGGG+TGG - chr1_1:68604144-68604163 Msa0039090:CDS 50.0%
CCGCTAGACCCAACAACAAT+TGG + chr1_1:68604931-68604950 None:intergenic 50.0%
AGCATTGCACCCACAAGTGA+AGG - chr1_1:68605215-68605234 Msa0039090:intron 50.0%
GCATTGCACCCACAAGTGAA+GGG - chr1_1:68605216-68605235 Msa0039090:intron 50.0%
CCACTAACTCCCTTCACTTG+TGG + chr1_1:68605228-68605247 None:intergenic 50.0%
CCACAAGTGAAGGGAGTTAG+TGG - chr1_1:68605225-68605244 Msa0039090:intron 50.0%
AATCAGCGTCCCTTCCATGT+GGG + chr1_1:68605287-68605306 None:intergenic 50.0%
AAATCAGCGTCCCTTCCATG+TGG + chr1_1:68605288-68605307 None:intergenic 50.0%
! ACATGGAAGGGACGCTGATT+TGG - chr1_1:68605287-68605306 Msa0039090:CDS 50.0%
GCTTCATGGCTAGAGTTGCC+TGG - chr1_1:68600135-68600154 Msa0039090:intron 55.0%
GTTTGGGCACCTGTGAGGAA+TGG - chr1_1:68600552-68600571 Msa0039090:intron 55.0%
GATGGAACTCTAGGCCTTCC+TGG - chr1_1:68600693-68600712 Msa0039090:intron 55.0%
TGTTGAGCATGATCTCGGCG+GGG + chr1_1:68600786-68600805 None:intergenic 55.0%
! GGAACCCATGTTTGGGCTAG+AGG + chr1_1:68601542-68601561 None:intergenic 55.0%
CCCAAACATGGGTTCCCTGT+AGG - chr1_1:68601546-68601565 Msa0039090:intron 55.0%
GCCTACAGGGAACCCATGTT+TGG + chr1_1:68601550-68601569 None:intergenic 55.0%
CATGGGTTCCCTGTAGGCAT+AGG - chr1_1:68601552-68601571 Msa0039090:intron 55.0%
! TGCTGCTGGTGTTGAACTCG+AGG - chr1_1:68602015-68602034 Msa0039090:CDS 55.0%
!! TTTGGTGAGGCATCGGGTCT+AGG + chr1_1:68602133-68602152 None:intergenic 55.0%
CCCTCCTCCTCCTCCATATT+TGG + chr1_1:68602151-68602170 None:intergenic 55.0%
GATGCTGCAAAGAGCCTTGG+CGG - chr1_1:68602343-68602362 Msa0039090:intron 55.0%
AAGCGTATCTGCAGGCAGCA+TGG - chr1_1:68602724-68602743 Msa0039090:CDS 55.0%
AGCGTATCTGCAGGCAGCAT+GGG - chr1_1:68602725-68602744 Msa0039090:CDS 55.0%
GGCAGCATGGGATATCTCGT+TGG - chr1_1:68602737-68602756 Msa0039090:CDS 55.0%
!! GAATCTGTCCAAGGCGCTGA+AGG - chr1_1:68602817-68602836 Msa0039090:CDS 55.0%
CCGAATAAGTCCAGCCAGCA+AGG - chr1_1:68602910-68602929 Msa0039090:CDS 55.0%
ATCAGCGTCCCTTCCATGTG+GGG + chr1_1:68605286-68605305 None:intergenic 55.0%
CTCAGGTTTGGGCACCTGTG+AGG - chr1_1:68600547-68600566 Msa0039090:intron 60.0%
!! ATGGTCAAGGTGTTGCGGGG+AGG - chr1_1:68601735-68601754 Msa0039090:intron 60.0%
!! TGGTCAAGGTGTTGCGGGGA+GGG - chr1_1:68601736-68601755 Msa0039090:intron 60.0%
CAAACGCTCCTTCAGCGCCT+TGG + chr1_1:68602828-68602847 None:intergenic 60.0%
GCTTAACGAGCCTTGCTGGC+TGG + chr1_1:68602923-68602942 None:intergenic 60.0%
TGCGAACCTGTGAGCCTCTG+AGG + chr1_1:68603199-68603218 None:intergenic 60.0%
!! GGTGAGGCATCGGGTCTAGG+TGG + chr1_1:68602130-68602149 None:intergenic 65.0%
!! GGAGGAGGAGGGAGTACCAC+AGG - chr1_1:68602159-68602178 Msa0039090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 68599384 68605634 68599384 ID=Msa0039090;Name=Msa0039090
chr1_1 mRNA 68599384 68605634 68599384 ID=Msa0039090-mRNA-1;Parent=Msa0039090;Name=Msa0039090-mRNA-1;_AED=0.14;_eAED=0.14;_QI=81|0.88|0.8|1|1|1|10|278|864
chr1_1 exon 68599384 68599826 68599384 ID=Msa0039090-mRNA-1:exon:22470;Parent=Msa0039090-mRNA-1
chr1_1 exon 68600279 68600325 68600279 ID=Msa0039090-mRNA-1:exon:22469;Parent=Msa0039090-mRNA-1
chr1_1 exon 68600780 68600864 68600780 ID=Msa0039090-mRNA-1:exon:22468;Parent=Msa0039090-mRNA-1
chr1_1 exon 68601589 68601667 68601589 ID=Msa0039090-mRNA-1:exon:22467;Parent=Msa0039090-mRNA-1
chr1_1 exon 68601756 68601816 68601756 ID=Msa0039090-mRNA-1:exon:22466;Parent=Msa0039090-mRNA-1
chr1_1 exon 68601940 68602311 68601940 ID=Msa0039090-mRNA-1:exon:22465;Parent=Msa0039090-mRNA-1
chr1_1 exon 68602654 68603557 68602654 ID=Msa0039090-mRNA-1:exon:22464;Parent=Msa0039090-mRNA-1
chr1_1 exon 68603848 68603895 68603848 ID=Msa0039090-mRNA-1:exon:22463;Parent=Msa0039090-mRNA-1
chr1_1 exon 68604074 68604639 68604074 ID=Msa0039090-mRNA-1:exon:22462;Parent=Msa0039090-mRNA-1
chr1_1 exon 68605286 68605634 68605286 ID=Msa0039090-mRNA-1:exon:22461;Parent=Msa0039090-mRNA-1
chr1_1 five_prime_UTR 68605554 68605634 68605554 ID=Msa0039090-mRNA-1:five_prime_utr;Parent=Msa0039090-mRNA-1
chr1_1 CDS 68605286 68605553 68605286 ID=Msa0039090-mRNA-1:cds;Parent=Msa0039090-mRNA-1
chr1_1 CDS 68604074 68604639 68604074 ID=Msa0039090-mRNA-1:cds;Parent=Msa0039090-mRNA-1
chr1_1 CDS 68603848 68603895 68603848 ID=Msa0039090-mRNA-1:cds;Parent=Msa0039090-mRNA-1
chr1_1 CDS 68602654 68603557 68602654 ID=Msa0039090-mRNA-1:cds;Parent=Msa0039090-mRNA-1
chr1_1 CDS 68601940 68602311 68601940 ID=Msa0039090-mRNA-1:cds;Parent=Msa0039090-mRNA-1
chr1_1 CDS 68601756 68601816 68601756 ID=Msa0039090-mRNA-1:cds;Parent=Msa0039090-mRNA-1
chr1_1 CDS 68601589 68601667 68601589 ID=Msa0039090-mRNA-1:cds;Parent=Msa0039090-mRNA-1
chr1_1 CDS 68600780 68600864 68600780 ID=Msa0039090-mRNA-1:cds;Parent=Msa0039090-mRNA-1
chr1_1 CDS 68600279 68600325 68600279 ID=Msa0039090-mRNA-1:cds;Parent=Msa0039090-mRNA-1
chr1_1 CDS 68599662 68599826 68599662 ID=Msa0039090-mRNA-1:cds;Parent=Msa0039090-mRNA-1
chr1_1 three_prime_UTR 68599384 68599661 68599384 ID=Msa0039090-mRNA-1:three_prime_utr;Parent=Msa0039090-mRNA-1
Gene Sequence

>Msa0039090

ATGTCAGAACCTGAAGAAGAAAATCAAGACTTTCCTCCCAAGACAAAAACATCATTAGAAGAACATGGTTGTTCTATGGATTTTGATCTAGATTTAGAAACATCATGGCCTTTGGATCACATGTCCTTTCTCTCTAATAATCCCATGTCACCTTTTTTGTTTTCAAACATCTCTGATCAACCTTCTTCTCCTCTATGGACTTTTACTGATGGAGAAGATGCCAAACTTGCAGCTTCAGCTTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAACTGAGAAGCCGGTGGAGAAAGACGACAACAAAACACTTTTGCCACCCCTTTTGCCACCAATAGAAAATTTGGATGGATATTGTGTAATCAAGGAAAAGATGACACAAGCGCTTCGTTACTTCAAAGAGTGGACTGAACTGAATGTATTGGCTCAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTACTTACAACTTCAGGTCAACCCTTTGTCCTTGATCCGCATAGTAATGGACTCAATCAGTATAGAACGGTTTCCCTGATGTACATGTTTTCTGTGGATGGAGAGAACGATGGAACTCTAGGCCTTCCTGGTCGAGTTTTTCAGCAGAAACTACCAGAATGGTCTCCCAATGTTCTGTACTATTCTAATAAAGAGTATCCCCGCCGAGATCATGCTCAACATTACAACGTTCGTGGAACCTTGGCTTTGCCTGTATTTGAACCTTCGTTGCAGTCATGTATCGGTGTGATAGAGTTGATAATGACTTCACTAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTAGAGGCAGTAAATTTGAGGAGCTCAGAGTTTTTGGACCATCCATTCACTCAGATTTGCAATGAAGGGCGTCAAAATGCATTATCGGAGATCTTAGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGATGGTAGTTGCATGGGGCAAGTGTGCATGTCTACAACTGAGGCGGCAGCCTATATCGTAGATGCTCATTTATGGGGTTTCAGAGAAGCATGTGTCGAACATCACTTACAACATGGTCAAGGTGTTGCGGGGAGGGCGTTTTTGTCTCAAAACATGTGCTTCTGCACAAACATTACCAAGTTCTGCAAGACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTCTGCGGAGTTTTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTGGGATTACTGAATTTCATGAACAGAAGACGCTGTTGGGATCCATATTGTCAACAATGAAACAGCATTTTCAGAGTCTTAACATTGCTGCTGGTGTTGAACTCGAGGAAAATGGTTCAATTGAAATTATTGAAGCAACTGATGAAGGCATTCATCTTAGAACCGAATCTATTCCTATTGCTCAATCTATTAAATCACCACCTAGACCCGATGCCTCACCAAATATGGAGGAGGAGGAGGGAGTACCACAGGATCCATCAGAGGTTCATGGTGAAAATGTAGGCAGAAGTGTTGATCCGATGTCTACCTTAGGGAATAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGCGTTTGCCCTACTACAATGAAGCGTATCTGCAGGCAGCATGGGATATCTCGTTGGCCATCTCGAAAGATTAACAAGGTTAACCGTTCCCTATCTAAGCTCAAACGTGTTATTGAATCTGTCCAAGGCGCTGAAGGAGCGTTTGATTTGAATTCTCTTGGGAATAATCAACTTCCAATTGTTAGTTCATTTCCTGAGCCTTCTACTCCGAATAAGTCCAGCCAGCAAGGCTCGTTAAGCAATAGGCCATCAGAGCCTCAGATGAAAGAGAATGAATTTGATGCCTCTAAAGTATCAGAAACAAACATACAGATTGTAATGGAAAATCAATTGCTAGGAGGAAGGAAACATAGTCTTGAGAAAGAAGTGATTAATGAGGCTCACAGGTTCGCATATTCTGAAGGAATCCGTTTTGATAAAATCAATGACGAATCAAGTTACAGCAGATGGGGTGCATATGGACAGTCAAAACTTGCTAACATTTTACATGCCAACCAACTTACAAAGCATCTCAAGGAAGATGGGGTGGATATTACTGCAAATTCTCTTCATCCAGGAACAATTGTTACCAATCTTTTCCGACATAACAGTGCAGTGAACGGTCTAATAAATGTGGTTGGGAGACTTGTGATGAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGTGAATATTTTTCAGACAGTAATGTGTACAAAACAACCCCACATGGAAGGGACGCTGATTTGGCAAAGAAACTCTGGGATTTCAGCATCAATTTGGTTAAGCAGAAATAG
Protein sequence

>Msa0039090

MSEPEEENQDFPPKTKTSLEEHGCSMDFDLDLETSWPLDHMSFLSNNPMSPFLFSNISDQPSSPLWTFTDGEDAKLAASAFSDCHKIFSCDSNSITEKPVEKDDNKTLLPPLLPPIENLDGYCVIKEKMTQALRYFKEWTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLNQYRTVSLMYMFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSNKEYPRRDHAQHYNVRGTLALPVFEPSLQSCIGVIELIMTSLKINYAPEVEKICKALEAVNLRSSEFLDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEAAAYIVDAHLWGFREACVEHHLQHGQGVAGRAFLSQNMCFCTNITKFCKTDYPLVHYALMFGLTSCFAICLRSFHTGNDDYVLEFFLPPGITEFHEQKTLLGSILSTMKQHFQSLNIAAGVELEENGSIEIIEATDEGIHLRTESIPIAQSIKSPPRPDASPNMEEEEGVPQDPSEVHGENVGRSVDPMSTLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFDLNSLGNNQLPIVSSFPEPSTPNKSSQQGSLSNRPSEPQMKENEFDASKVSETNIQIVMENQLLGGRKHSLEKEVINEAHRFAYSEGIRFDKINDESSYSRWGAYGQSKLANILHANQLTKHLKEDGVDITANSLHPGTIVTNLFRHNSAVNGLINVVGRLVMKNVQQGAATTCYVALHPQVKGVSGEYFSDSNVYKTTPHGRDADLAKKLWDFSINLVKQK*