AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0133450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133450 MtrunA17_Chr1g0202861 96.373 193 5 1 1 193 42 232 2.70e-134 380
Msa0133450 MtrunA17_Chr1g0202931 83.420 193 30 1 1 193 1 191 1.77e-115 331
Msa0133450 MtrunA17_Chr1g0202871 81.865 193 33 1 1 193 1 191 5.48e-114 328
Msa0133450 MtrunA17_Chr1g0202891 81.347 193 34 1 1 193 1 191 2.64e-111 321
Msa0133450 MtrunA17_Chr8g0386971 71.066 197 55 1 1 197 1 195 1.13e-98 289
Msa0133450 MtrunA17_Chr6g0470321 72.826 184 48 1 10 193 18 199 5.08e-91 270
Msa0133450 MtrunA17_Chr6g0470501 72.283 184 49 1 10 193 37 218 5.10e-90 268
Msa0133450 MtrunA17_Chr1g0182541 59.239 184 73 1 8 191 13 194 9.96e-74 226
Msa0133450 MtrunA17_Chr7g0262941 58.378 185 74 2 8 191 13 195 2.41e-70 217
Msa0133450 MtrunA17_Chr4g0058731 50.877 171 79 2 8 175 24 192 1.08e-47 159
Msa0133450 MtrunA17_Chr8g0388831 48.521 169 84 2 8 175 13 179 7.98e-46 154
Msa0133450 MtrunA17_Chr3g0117241 48.611 144 69 2 8 148 13 154 3.83e-40 134
Msa0133450 MtrunA17_Chr1g0202911 78.082 73 16 0 33 105 4 76 1.50e-33 115
Msa0133450 MtrunA17_Chr6g0481311 40.506 158 79 5 30 179 62 212 1.50e-20 88.2
Msa0133450 MtrunA17_Chr2g0317921 37.956 137 77 4 31 163 88 220 4.10e-14 70.1
Msa0133450 MtrunA17_Chr6g0466681 29.054 148 99 2 25 172 62 203 3.72e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133450 AT4G23420.5 74.611 193 47 1 1 193 1 191 6.29e-105 303
Msa0133450 AT4G23420.4 74.611 193 47 1 1 193 1 191 9.60e-105 303
Msa0133450 AT4G23420.1 74.611 193 47 1 1 193 1 191 4.59e-104 303
Msa0133450 AT4G23420.2 74.611 193 47 1 1 193 1 191 4.59e-104 303
Msa0133450 AT4G23430.2 74.093 193 48 1 1 193 1 191 2.24e-103 301
Msa0133450 AT4G23430.1 74.093 193 48 1 1 193 1 191 2.61e-103 301
Msa0133450 AT4G23420.3 73.298 191 49 1 3 193 20 208 5.18e-100 293
Msa0133450 AT4G11410.2 72.917 192 50 1 1 192 1 190 7.31e-99 288
Msa0133450 AT4G11410.1 72.917 192 50 1 1 192 1 190 6.86e-98 287
Msa0133450 AT4G23430.4 70.466 193 45 1 1 193 1 181 4.21e-96 282
Msa0133450 AT4G23430.3 70.466 193 45 1 1 193 1 181 5.36e-96 282
Msa0133450 AT2G37540.2 57.754 187 77 1 6 192 10 194 1.07e-71 219
Msa0133450 AT2G37540.1 57.754 187 77 1 6 192 10 194 2.18e-70 217
Msa0133450 AT5G02540.1 59.043 188 75 1 6 193 10 195 1.85e-65 205
Msa0133450 AT4G24050.2 50.000 168 82 1 8 175 13 178 3.55e-50 164
Msa0133450 AT4G24050.1 50.000 168 82 1 8 175 13 178 1.77e-49 164
Msa0133450 AT5G50130.3 47.368 190 96 2 8 195 13 200 1.90e-49 162
Msa0133450 AT5G50130.9 48.087 183 91 2 8 188 13 193 2.94e-49 161
Msa0133450 AT5G50130.4 47.368 190 96 2 8 195 13 200 5.23e-49 162
Msa0133450 AT5G50130.2 48.087 183 91 2 8 188 13 193 8.82e-49 162
Msa0133450 AT5G50130.1 47.368 190 96 2 8 195 13 200 1.23e-48 162
Msa0133450 AT5G50130.5 46.914 162 84 1 34 195 8 167 1.19e-41 143
Msa0133450 AT5G50130.6 47.742 155 79 1 34 188 8 160 1.72e-41 142
Msa0133450 AT5G50130.7 46.914 162 84 1 34 195 8 167 3.09e-41 142
Msa0133450 AT5G50130.8 47.742 155 79 1 34 188 8 160 3.51e-41 142
Msa0133450 AT1G64590.1 47.337 169 87 1 17 185 22 188 1.60e-38 135
Msa0133450 AT5G53090.1 49.138 116 51 3 30 138 57 171 4.37e-21 90.1
Msa0133450 AT5G53100.1 38.608 158 82 4 30 179 45 195 2.46e-20 87.8
Msa0133450 AT4G27760.1 43.966 116 57 3 30 138 58 172 3.77e-20 87.4
Msa0133450 AT5G54190.1 36.296 135 78 4 33 163 96 226 4.39e-18 82.0
Msa0133450 AT4G09750.1 31.953 169 107 3 4 172 20 180 9.40e-16 74.7
Msa0133450 AT1G03630.1 38.686 137 76 4 31 163 91 223 1.21e-15 75.1
Msa0133450 AT1G03630.2 38.686 137 76 4 31 163 89 221 1.23e-15 75.1
Msa0133450 AT4G27440.2 39.259 135 74 4 33 163 92 222 7.95e-15 72.8
Msa0133450 AT4G27440.1 39.259 135 74 4 33 163 92 222 7.95e-15 72.8
Msa0133450 AT5G61830.1 29.655 145 97 3 32 176 39 178 8.51e-12 63.5
Msa0133450 AT5G61830.2 29.655 145 97 3 32 176 39 178 8.51e-12 63.5
Msa0133450 AT5G04070.1 28.723 188 104 7 32 200 61 237 4.30e-11 61.6

Find 40 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCGGTGTTCATGTGATTA+TGG 0.226178 1_3:-64708042 Msa0133450:CDS
TTCAGCAAGAAAGGTGTTTC+TGG 0.229466 1_3:-64709248 Msa0133450:CDS
GGTCTCACTGCCATTGTTAC+TGG 0.236378 1_3:-64709173 Msa0133450:intron
CTGCAGTTCAATGTTGTCTT+TGG 0.239372 1_3:+64707613 None:intergenic
AAGAAATAATGCAGGAATTA+TGG 0.267594 1_3:-64707654 Msa0133450:CDS
CGCGGTGTTCATGTGATTAT+GGG 0.273076 1_3:-64708041 Msa0133450:CDS
GCATCTGAGTATAATTCTTC+TGG 0.288049 1_3:-64707900 Msa0133450:CDS
GGAGTTAGATCTTAGCTCAT+TGG 0.400097 1_3:-64707940 Msa0133450:CDS
TTACCACATACCTATGTGAT+TGG 0.416556 1_3:+64707583 None:intergenic
ACAGGAGCATCCAGCGGCAT+TGG 0.459677 1_3:-64708092 Msa0133450:intron
GAAACACCTTTCTTGCTGAA+TGG 0.471111 1_3:+64709251 None:intergenic
AGTCTCAGCGCCAATGCCGC+TGG 0.474761 1_3:+64708082 None:intergenic
CTCTGCTAAACTTGATGCCA+TGG 0.490137 1_3:-64707961 Msa0133450:CDS
ATAAAATCAATGACGAATCA+AGG 0.490214 1_3:-64707224 Msa0133450:intron
CCACATACCTATGTGATTGG+TGG 0.516243 1_3:+64707586 None:intergenic
ATGTGGCCATTCAGCAAGAA+AGG 0.533159 1_3:-64709257 Msa0133450:CDS
TTGTCTTTGGACAAACTGAA+AGG 0.538568 1_3:+64707626 None:intergenic
GTAATTGTAAGAAATAATGC+AGG 0.539047 1_3:-64707662 Msa0133450:intron
ACTGCAATTGCAATATATCT+CGG 0.539733 1_3:-64709327 Msa0133450:five_prime_UTR
CTGCAATTGCAATATATCTC+GGG 0.542693 1_3:-64709326 Msa0133450:five_prime_UTR
ATGTCGCCTCAGAGGCTCAC+AGG 0.545694 1_3:-64707275 Msa0133450:CDS
TGTCTTTGGACAAACTGAAA+GGG 0.554943 1_3:+64707627 None:intergenic
ACACATGGAATCGATGCTAC+TGG 0.558914 1_3:-64709194 Msa0133450:CDS
ACACGCAAAAGTAAGAAAGA+AGG 0.580402 1_3:-64707309 Msa0133450:CDS
AGAGATTGATACGCAATATG+TGG 0.587498 1_3:-64709274 Msa0133450:exon
TGTCAAAGATACAATACTCA+AGG 0.594611 1_3:-64707991 Msa0133450:CDS
CACAGGTTCGCATATTCTGA+AGG 0.595062 1_3:-64707258 Msa0133450:CDS
CAGTTTGCCACCAATCACAT+AGG 0.614534 1_3:-64707593 Msa0133450:intron
TCTTACATCAAGATGTTCAG+CGG 0.618040 1_3:+64707873 None:intergenic
TGCGAACCTGTGAGCCTCTG+AGG 0.625555 1_3:+64707269 None:intergenic
ACTCGTGTCCTTGCTTTGCG+CGG 0.635714 1_3:-64708059 Msa0133450:CDS
TGAGCTAAGATCTAACTCCA+TGG 0.641141 1_3:+64707944 None:intergenic
CATGAACACCGCGCAAAGCA+AGG 0.649556 1_3:+64708051 None:intergenic
AATTGTTAATGTCGCCTCAG+AGG 0.651795 1_3:-64707283 Msa0133450:CDS
ATGGCATCAAGTTTAGCAGA+GGG 0.654356 1_3:+64707963 None:intergenic
TATGGACCAACCAGTAACAA+TGG 0.654679 1_3:+64709163 None:intergenic
GATTATGGGTGTGAGAAACA+TGG 0.655252 1_3:-64708027 Msa0133450:CDS
ACTGCTGAACAAGTTACACA+TGG 0.658849 1_3:-64709209 Msa0133450:CDS
CATGGCATCAAGTTTAGCAG+AGG 0.683203 1_3:+64707962 None:intergenic
GTGATAACAGGAGCATCCAG+CGG 0.698671 1_3:-64708098 Msa0133450:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAATTGCTTTA+TGG + chr1_3:64708056-64708075 None:intergenic 10.0%
!!! AAGCAATTTTTTTTTTTTAA+TGG - chr1_3:64708058-64708077 Msa0133450:CDS 10.0%
!! AACGTTTATGAATATATTAT+AGG + chr1_3:64706228-64706247 None:intergenic 15.0%
!! AAAAAAAAAATTCAGTTGAT+TGG + chr1_3:64707573-64707592 None:intergenic 15.0%
!!! AAGAAATAAGCTATTTTTTT+TGG + chr1_3:64708289-64708308 None:intergenic 15.0%
!! GCAATTGTTTAAATTTAAAT+TGG - chr1_3:64709106-64709125 Msa0133450:intron 15.0%
!! TGTTTAAATTTAAATTGGAA+TGG - chr1_3:64709111-64709130 Msa0133450:intron 15.0%
!! GAAATAATTAAGAAAGAAAC+AGG + chr1_3:64705970-64705989 None:intergenic 20.0%
!! TTTCTTAATTATTTCCCAAA+AGG - chr1_3:64705975-64705994 Msa0133450:intron 20.0%
!! TTCTTAATTATTTCCCAAAA+GGG - chr1_3:64705976-64705995 Msa0133450:intron 20.0%
!!! TAAAAAGATTTTCGTGTAAA+CGG + chr1_3:64706135-64706154 None:intergenic 20.0%
!! ATATGCATAAAAAACTACTA+AGG + chr1_3:64706285-64706304 None:intergenic 20.0%
!!! AGTTTTTTATGCATATCTTT+TGG - chr1_3:64706289-64706308 Msa0133450:intron 20.0%
!!! AAATTTTTTATGCAGTTTCT+GGG + chr1_3:64706333-64706352 None:intergenic 20.0%
!!! TAAATTTTTTATGCAGTTTC+TGG + chr1_3:64706334-64706353 None:intergenic 20.0%
!! ATTAATCATGATTTATCTCT+TGG - chr1_3:64706749-64706768 Msa0133450:intron 20.0%
!!! TCATCAAATGAATTTTCAAA+AGG + chr1_3:64707596-64707615 None:intergenic 20.0%
!!! ATGAATTATTTTAATTACGC+AGG - chr1_3:64707722-64707741 Msa0133450:intron 20.0%
!! AATTGCTTAAAATGTAATCA+AGG + chr1_3:64707932-64707951 None:intergenic 20.0%
!!! TTGATTACATTTTAAGCAAT+TGG - chr1_3:64707931-64707950 Msa0133450:CDS 20.0%
!! AAAAAAAATTGCTTTATGGA+TGG + chr1_3:64708052-64708071 None:intergenic 20.0%
!!! ATATTTTTTAATGGATGGAT+TGG + chr1_3:64708091-64708110 None:intergenic 20.0%
!! AATCCATCCATTAAAAAATA+TGG - chr1_3:64708090-64708109 Msa0133450:CDS 20.0%
!!! CATTGGATCTTTAAAATAAT+TGG + chr1_3:64708131-64708150 None:intergenic 20.0%
!!! CAATTATTTTAAAGATCCAA+TGG - chr1_3:64708129-64708148 Msa0133450:intron 20.0%
!!! ATTGTGTATTTTTTATCCAA+TGG - chr1_3:64708161-64708180 Msa0133450:intron 20.0%
!!! TAAGCTATTTTTTTTGGTTA+CGG + chr1_3:64708283-64708302 None:intergenic 20.0%
!! AAAAAAAAAGGTAAGAGAAT+AGG + chr1_3:64709027-64709046 None:intergenic 20.0%
!! TAAATTTAAATTGGAATGGT+TGG - chr1_3:64709115-64709134 Msa0133450:intron 20.0%
!!! TGTTTGGTATTATGTTTTAT+TGG - chr1_3:64709244-64709263 Msa0133450:CDS 20.0%
!!! TTATGTTTTATTGGAATTGT+TGG - chr1_3:64709253-64709272 Msa0133450:CDS 20.0%
! CTCTGATATGTAAATTCAAA+CGG - chr1_3:64706057-64706076 Msa0133450:intron 25.0%
! AATTGGATAGAGTCAAATAT+GGG + chr1_3:64706452-64706471 None:intergenic 25.0%
! AAATTGGATAGAGTCAAATA+TGG + chr1_3:64706453-64706472 None:intergenic 25.0%
!!! ATTTCTGGTGAAACAATTAT+TGG + chr1_3:64706565-64706584 None:intergenic 25.0%
! TATTGAAGTTGTTAGTTACT+TGG - chr1_3:64707310-64707329 Msa0133450:CDS 25.0%
! GTAATTGTAAGAAATAATGC+AGG - chr1_3:64707438-64707457 Msa0133450:intron 25.0%
! AAGAAATAATGCAGGAATTA+TGG - chr1_3:64707446-64707465 Msa0133450:intron 25.0%
!!! AATGTTACTGTTTTATTCTC+CGG - chr1_3:64707539-64707558 Msa0133450:intron 25.0%
!!! CGTCATTGATTTTATCAAAA+CGG + chr1_3:64707871-64707890 None:intergenic 25.0%
! ATAAAATCAATGACGAATCA+AGG - chr1_3:64707876-64707895 Msa0133450:intron 25.0%
! TTGCATGATGAATTAAACTA+GGG - chr1_3:64707964-64707983 Msa0133450:CDS 25.0%
!!! CATCCATATTTTTTAATGGA+TGG + chr1_3:64708096-64708115 None:intergenic 25.0%
! CATCCATTAAAAAATATGGA+TGG - chr1_3:64708094-64708113 Msa0133450:intron 25.0%
!!! GATCCATCCATATTTTTTAA+TGG + chr1_3:64708100-64708119 None:intergenic 25.0%
!!! GGATCTTTAAAATAATTGGA+TGG + chr1_3:64708127-64708146 None:intergenic 25.0%
!! TTTTAATCAAAGTGATCCAT+TGG + chr1_3:64708180-64708199 None:intergenic 25.0%
!!! AAGCTATTTTTTTTGGTTAC+GGG + chr1_3:64708282-64708301 None:intergenic 25.0%
! GATTTCGATTTCAGAAATTA+GGG + chr1_3:64708324-64708343 None:intergenic 25.0%
! AGATTTCGATTTCAGAAATT+AGG + chr1_3:64708325-64708344 None:intergenic 25.0%
! AATTTCAATCAATAGGAAGT+AGG + chr1_3:64708438-64708457 None:intergenic 25.0%
!! TTTTGTTGCATTTTCTGAAT+TGG - chr1_3:64708566-64708585 Msa0133450:intron 25.0%
!! TTTGTTGCATTTTCTGAATT+GGG - chr1_3:64708567-64708586 Msa0133450:intron 25.0%
!! TTTTGTTGCATTTTCTGAAT+TGG - chr1_3:64708566-64708585 Msa0133450:intron 25.0%
!! TTTGTTGCATTTTCTGAATT+GGG - chr1_3:64708567-64708586 Msa0133450:intron 25.0%
! AACTTACATTCAGTTTCATA+AGG + chr1_3:64708920-64708939 None:intergenic 25.0%
! TTATGTTAGGTTTAGTTAGT+AGG - chr1_3:64708986-64709005 Msa0133450:intron 25.0%
!!! ATTAATGGATTAGTTGCATT+TGG - chr1_3:64709055-64709074 Msa0133450:intron 25.0%
! TGTATACGATATATGATGTT+TGG - chr1_3:64709228-64709247 Msa0133450:CDS 25.0%
ACTGCAATTGCAATATATCT+CGG - chr1_3:64705773-64705792 Msa0133450:CDS 30.0%
GTCTTAGATCTTTATCGAAA+AGG + chr1_3:64706427-64706446 None:intergenic 30.0%
ATTGGATAGAGTCAAATATG+GGG + chr1_3:64706451-64706470 None:intergenic 30.0%
AACACAAAAAAGTGGTATTG+CGG + chr1_3:64706481-64706500 None:intergenic 30.0%
! GATAACTTGAGTTTGATTTC+TGG + chr1_3:64706580-64706599 None:intergenic 30.0%
TATCCTGAACAATTTGTCTT+TGG - chr1_3:64706596-64706615 Msa0133450:intron 30.0%
!! TATCCCTTTAAAACTACTAG+TGG - chr1_3:64706660-64706679 Msa0133450:intron 30.0%
!! ATCCAGAAGGTTTTTGAAAA+TGG - chr1_3:64706806-64706825 Msa0133450:intron 30.0%
! AACCATTTTCAAAAACCTTC+TGG + chr1_3:64706811-64706830 None:intergenic 30.0%
! ATGGTTTGTGAATCTAATTG+TGG - chr1_3:64706825-64706844 Msa0133450:intron 30.0%
! TGGTTTGTGAATCTAATTGT+GGG - chr1_3:64706826-64706845 Msa0133450:intron 30.0%
ATATACAGGGTTTCAAATTG+TGG + chr1_3:64706910-64706929 None:intergenic 30.0%
TATATGGACATTGTGATAAC+AGG - chr1_3:64706990-64707009 Msa0133450:intron 30.0%
TGTCAAAGATACAATACTCA+AGG - chr1_3:64707109-64707128 Msa0133450:intron 30.0%
TATGTTCCAACTTTCAATTG+TGG - chr1_3:64707358-64707377 Msa0133450:CDS 30.0%
AAGAAACCACAATTGAAAGT+TGG + chr1_3:64707367-64707386 None:intergenic 30.0%
TACAGTATCGTTTAATGCAA+AGG - chr1_3:64707668-64707687 Msa0133450:intron 30.0%
! TCTCTTGACAAATCTTTTGT+TGG - chr1_3:64707751-64707770 Msa0133450:intron 30.0%
GTTGCATGATGAATTAAACT+AGG - chr1_3:64707963-64707982 Msa0133450:CDS 30.0%
TGCATGATGAATTAAACTAG+GGG - chr1_3:64707965-64707984 Msa0133450:CDS 30.0%
AAATTGCTTTATGGATGGAT+TGG + chr1_3:64708047-64708066 None:intergenic 30.0%
ACACAATAAAAGTGATCCAT+TGG + chr1_3:64708148-64708167 None:intergenic 30.0%
ATTCGATTTCAGATTTGAAG+AGG + chr1_3:64708407-64708426 None:intergenic 30.0%
! CAAATCTGAAATCGAATCTT+CGG - chr1_3:64708410-64708429 Msa0133450:intron 30.0%
ACGCAAGAATTTCAATCAAT+AGG + chr1_3:64708445-64708464 None:intergenic 30.0%
AGTATAATAGAGACTCACAA+AGG + chr1_3:64708537-64708556 None:intergenic 30.0%
TCACATTGTTAAACCCAATT+TGG + chr1_3:64708642-64708661 None:intergenic 30.0%
ATCAGTTGTTAAACCCAATT+TGG + chr1_3:64708738-64708757 None:intergenic 30.0%
TTAGTTAGTAGGAAAGTTTG+AGG - chr1_3:64708997-64709016 Msa0133450:intron 30.0%
TAGTTAGTAGGAAAGTTTGA+GGG - chr1_3:64708998-64709017 Msa0133450:intron 30.0%
!! TTGGAATTTTGATGGTACTA+AGG - chr1_3:64709134-64709153 Msa0133450:intron 30.0%
ACATATACATACACACTGAA+AGG + chr1_3:64709310-64709329 None:intergenic 30.0%
CTGCAATTGCAATATATCTC+GGG - chr1_3:64705774-64705793 Msa0133450:CDS 35.0%
AGAGATTGATACGCAATATG+TGG - chr1_3:64705826-64705845 Msa0133450:intron 35.0%
!!! AAGGTGTTTCTGGTTTTTCA+TGG - chr1_3:64705862-64705881 Msa0133450:intron 35.0%
AAAGAAACAGGAAGAGAGTA+TGG + chr1_3:64705958-64705977 None:intergenic 35.0%
AAGATGATCGTGTAAACTGA+TGG - chr1_3:64706088-64706107 Msa0133450:intron 35.0%
TTTGCATCACACATAAGCAT+GGG - chr1_3:64706378-64706397 Msa0133450:intron 35.0%
TTGGATAGAGTCAAATATGG+GGG + chr1_3:64706450-64706469 None:intergenic 35.0%
TCACCAAAGACAAATTGTTC+AGG + chr1_3:64706602-64706621 None:intergenic 35.0%
!!! CCACCACTAGTAGTTTTAAA+GGG + chr1_3:64706666-64706685 None:intergenic 35.0%
!!! ACCACCACTAGTAGTTTTAA+AGG + chr1_3:64706667-64706686 None:intergenic 35.0%
TTTCTCTCTTTATCTTCTGC+TGG - chr1_3:64706776-64706795 Msa0133450:intron 35.0%
GATGTGTGACTATTGTAATG+CGG - chr1_3:64706967-64706986 Msa0133450:intron 35.0%
GACTATTGTAATGCGGTATA+TGG - chr1_3:64706974-64706993 Msa0133450:intron 35.0%
GCATCTGAGTATAATTCTTC+TGG - chr1_3:64707200-64707219 Msa0133450:intron 35.0%
TCTTACATCAAGATGTTCAG+CGG + chr1_3:64707230-64707249 None:intergenic 35.0%
TGTCTTTGGACAAACTGAAA+GGG + chr1_3:64707476-64707495 None:intergenic 35.0%
TTGTCTTTGGACAAACTGAA+AGG + chr1_3:64707477-64707496 None:intergenic 35.0%
TTACCACATACCTATGTGAT+TGG + chr1_3:64707520-64707539 None:intergenic 35.0%
ACACGCAAAAGTAAGAAAGA+AGG - chr1_3:64707791-64707810 Msa0133450:intron 35.0%
ATGATGAATTAAACTAGGGG+TGG - chr1_3:64707968-64707987 Msa0133450:CDS 35.0%
!! GGATTGGATGGATTTTGTAA+CGG + chr1_3:64708031-64708050 None:intergenic 35.0%
AGAAATTAGGGTTGAGTTTG+GGG + chr1_3:64708312-64708331 None:intergenic 35.0%
CAGAAATTAGGGTTGAGTTT+GGG + chr1_3:64708313-64708332 None:intergenic 35.0%
TCAGAAATTAGGGTTGAGTT+TGG + chr1_3:64708314-64708333 None:intergenic 35.0%
GATTGCTACATGATTTGAAG+AGG + chr1_3:64708366-64708385 None:intergenic 35.0%
AAGATGAAGAATCGAATCGT+CGG + chr1_3:64708489-64708508 None:intergenic 35.0%
! TTTTGCTGCGTTTTCCAAAT+TGG - chr1_3:64708625-64708644 Msa0133450:intron 35.0%
! TTTGCTGCGTTTTCCAAATT+GGG - chr1_3:64708626-64708645 Msa0133450:intron 35.0%
! TTTTGCTGCGTTTTCCAAAT+TGG - chr1_3:64708625-64708644 Msa0133450:intron 35.0%
! TTTGCTGCGTTTTCCAAATT+GGG - chr1_3:64708626-64708645 Msa0133450:intron 35.0%
! ATCTAGTTCATCATAGCTAC+AGG - chr1_3:64708956-64708975 Msa0133450:intron 35.0%
TACAGGATGTGAGTTATGTT+AGG - chr1_3:64708973-64708992 Msa0133450:intron 35.0%
! TGGAATGGTTGGAATTTTGA+TGG - chr1_3:64709126-64709145 Msa0133450:intron 35.0%
!! GAATTTTGATGGTACTAAGG+AGG - chr1_3:64709137-64709156 Msa0133450:intron 35.0%
GAAACACCTTTCTTGCTGAA+TGG + chr1_3:64705852-64705871 None:intergenic 40.0%
!! TTCAGCAAGAAAGGTGTTTC+TGG - chr1_3:64705852-64705871 Msa0133450:intron 40.0%
ACTGCTGAACAAGTTACACA+TGG - chr1_3:64705891-64705910 Msa0133450:intron 40.0%
TATGGACCAACCAGTAACAA+TGG + chr1_3:64705940-64705959 None:intergenic 40.0%
! GCATGAAGAGATACCCTTTT+GGG + chr1_3:64705992-64706011 None:intergenic 40.0%
! TGCATGAAGAGATACCCTTT+TGG + chr1_3:64705993-64706012 None:intergenic 40.0%
CTTTGCATCACACATAAGCA+TGG - chr1_3:64706377-64706396 Msa0133450:intron 40.0%
! CACACATAAGCATGGGTTTT+AGG - chr1_3:64706385-64706404 Msa0133450:intron 40.0%
TGGATAGAGTCAAATATGGG+GGG + chr1_3:64706449-64706468 None:intergenic 40.0%
ACAAAAAAGTGGTATTGCGG+AGG + chr1_3:64706478-64706497 None:intergenic 40.0%
GGAGGGTTAACACAAAAAAG+TGG + chr1_3:64706489-64706508 None:intergenic 40.0%
CTTACAAACTCCAGATTACC+AGG + chr1_3:64706532-64706551 None:intergenic 40.0%
! CTGGTAATCTGGAGTTTGTA+AGG - chr1_3:64706530-64706549 Msa0133450:intron 40.0%
TTAACCACTTGAGTCCAACT+TGG - chr1_3:64706628-64706647 Msa0133450:intron 40.0%
!! CCCTTTAAAACTACTAGTGG+TGG - chr1_3:64706663-64706682 Msa0133450:intron 40.0%
TGCTGGATTACATATCCAGA+AGG - chr1_3:64706793-64706812 Msa0133450:intron 40.0%
AGGGTTTCAAATTGTGGTTG+TGG + chr1_3:64706904-64706923 None:intergenic 40.0%
CAGTGTAGCATGCATATACA+GGG + chr1_3:64706923-64706942 None:intergenic 40.0%
TCAGTGTAGCATGCATATAC+AGG + chr1_3:64706924-64706943 None:intergenic 40.0%
GATTATGGGTGTGAGAAACA+TGG - chr1_3:64707073-64707092 Msa0133450:intron 40.0%
ATGGCATCAAGTTTAGCAGA+GGG + chr1_3:64707140-64707159 None:intergenic 40.0%
TGAGCTAAGATCTAACTCCA+TGG + chr1_3:64707159-64707178 None:intergenic 40.0%
GGAGTTAGATCTTAGCTCAT+TGG - chr1_3:64707160-64707179 Msa0133450:intron 40.0%
CTGCAGTTCAATGTTGTCTT+TGG + chr1_3:64707490-64707509 None:intergenic 40.0%
CAGTTGATTGGATCTTACTC+CGG + chr1_3:64707561-64707580 None:intergenic 40.0%
AATTGTTAATGTCGCCTCAG+AGG - chr1_3:64707817-64707836 Msa0133450:intron 40.0%
CCATGAAATCCATATCCATC+CGG - chr1_3:64708000-64708019 Msa0133450:CDS 40.0%
!! TGGATGGATTTTGTAACGGA+TGG + chr1_3:64708027-64708046 None:intergenic 40.0%
!! TGCTTTATGGATGGATTGGA+TGG + chr1_3:64708043-64708062 None:intergenic 40.0%
GCAATTTGCAACACAGACAA+TGG + chr1_3:64708898-64708917 None:intergenic 40.0%
CTACATTCCATGACTGATTG+AGG - chr1_3:64709198-64709217 Msa0133450:CDS 40.0%
TAGAAGACCTCAATCAGTCA+TGG + chr1_3:64709208-64709227 None:intergenic 40.0%
!! GTCACTGCTTTTGTGACACA+CGG - chr1_3:64705796-64705815 Msa0133450:intron 45.0%
ATGTGGCCATTCAGCAAGAA+AGG - chr1_3:64705843-64705862 Msa0133450:intron 45.0%
ACACATGGAATCGATGCTAC+TGG - chr1_3:64705906-64705925 Msa0133450:intron 45.0%
TCACTGCCATTGTTACTGGT+TGG - chr1_3:64705931-64705950 Msa0133450:intron 45.0%
TGGTATTGCGGAGGCTAAAT+TGG + chr1_3:64706469-64706488 None:intergenic 45.0%
! GTGTTAACCCTCCGATTTTC+AGG - chr1_3:64706496-64706515 Msa0133450:intron 45.0%
CCTTTCTCCTGAAAATCGGA+GGG + chr1_3:64706506-64706525 None:intergenic 45.0%
!! CCTCCGATTTTCAGGAGAAA+GGG - chr1_3:64706504-64706523 Msa0133450:intron 45.0%
!! CTCCGATTTTCAGGAGAAAG+GGG - chr1_3:64706505-64706524 Msa0133450:intron 45.0%
GACCCCTTTCTCCTGAAAAT+CGG + chr1_3:64706510-64706529 None:intergenic 45.0%
CGCGGTGTTCATGTGATTAT+GGG - chr1_3:64707059-64707078 Msa0133450:intron 45.0%
CATGGCATCAAGTTTAGCAG+AGG + chr1_3:64707141-64707160 None:intergenic 45.0%
CTCTGCTAAACTTGATGCCA+TGG - chr1_3:64707139-64707158 Msa0133450:intron 45.0%
CAGTTTGCCACCAATCACAT+AGG - chr1_3:64707507-64707526 Msa0133450:intron 45.0%
CCACATACCTATGTGATTGG+TGG + chr1_3:64707517-64707536 None:intergenic 45.0%
CCACCAATCACATAGGTATG+TGG - chr1_3:64707514-64707533 Msa0133450:intron 45.0%
CACAGGTTCGCATATTCTGA+AGG - chr1_3:64707842-64707861 Msa0133450:intron 45.0%
CCGGATGGATATGGATTTCA+TGG + chr1_3:64708003-64708022 None:intergenic 45.0%
!!! GGATTTTGTAACGGATGGAC+CGG + chr1_3:64708022-64708041 None:intergenic 45.0%
AATCGAATCGTCGGAATCGT+CGG + chr1_3:64708480-64708499 None:intergenic 45.0%
GATGGTACTAAGGAGGCTTA+CGG - chr1_3:64709144-64709163 Msa0133450:intron 45.0%
!! TAATAAAGATAAAAAAAAAA+AGG + chr1_3:64709039-64709058 None:intergenic 5.0%
!!! TTTTTTTTTATCTTTATTAA+TGG - chr1_3:64709040-64709059 Msa0133450:intron 5.0%
GGTCTCACTGCCATTGTTAC+TGG - chr1_3:64705927-64705946 Msa0133450:intron 50.0%
!! CCCTCCGATTTTCAGGAGAA+AGG - chr1_3:64706503-64706522 Msa0133450:intron 50.0%
CCCTTTCTCCTGAAAATCGG+AGG + chr1_3:64706507-64706526 None:intergenic 50.0%
!! TTTTCAGGAGAAAGGGGTCC+TGG - chr1_3:64706511-64706530 Msa0133450:intron 50.0%
AGAAAGGGGTCCTGGTAATC+TGG - chr1_3:64706519-64706538 Msa0133450:intron 50.0%
GGATATTGCACGCTCCAAGT+TGG + chr1_3:64706645-64706664 None:intergenic 50.0%
!! GTGATAACAGGAGCATCCAG+CGG - chr1_3:64707002-64707021 Msa0133450:intron 50.0%
GCGCGGTGTTCATGTGATTA+TGG - chr1_3:64707058-64707077 Msa0133450:intron 50.0%
!! TTTGTAACGGATGGACCGGA+TGG + chr1_3:64708018-64708037 None:intergenic 50.0%
! CGCTCCAAGTTGGACTCAAG+TGG + chr1_3:64706635-64706654 None:intergenic 55.0%
ACTCGTGTCCTTGCTTTGCG+CGG - chr1_3:64707041-64707060 Msa0133450:intron 55.0%
CATGAACACCGCGCAAAGCA+AGG + chr1_3:64707052-64707071 None:intergenic 55.0%
ACGGATGGACCGGATGGATA+TGG + chr1_3:64708012-64708031 None:intergenic 55.0%
!! ACAGGAGCATCCAGCGGCAT+TGG - chr1_3:64707008-64707027 Msa0133450:intron 60.0%
ATGTCGCCTCAGAGGCTCAC+AGG - chr1_3:64707825-64707844 Msa0133450:intron 60.0%
TGCGAACCTGTGAGCCTCTG+AGG + chr1_3:64707834-64707853 None:intergenic 60.0%
CGTCGGAATCGTCGGAAGAG+AGG + chr1_3:64708472-64708491 None:intergenic 60.0%
AGTCTCAGCGCCAATGCCGC+TGG + chr1_3:64707021-64707040 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 64705750 64709372 64705750 ID=Msa0133450;Name=Msa0133450
chr1_3 mRNA 64705750 64709372 64705750 ID=Msa0133450-mRNA-1;Parent=Msa0133450;Name=Msa0133450-mRNA-1;_AED=0.50;_eAED=0.50;_QI=93|0.4|0.66|0.66|1|1|6|0|211
chr1_3 exon 64705750 64705807 64705750 ID=Msa0133450-mRNA-1:exon:21876;Parent=Msa0133450-mRNA-1
chr1_3 exon 64707225 64707378 64707225 ID=Msa0133450-mRNA-1:exon:21875;Parent=Msa0133450-mRNA-1
chr1_3 exon 64707451 64707456 64707451 ID=Msa0133450-mRNA-1:exon:21874;Parent=Msa0133450-mRNA-1
chr1_3 exon 64707594 64707673 64707594 ID=Msa0133450-mRNA-1:exon:21873;Parent=Msa0133450-mRNA-1
chr1_3 exon 64707879 64708110 64707879 ID=Msa0133450-mRNA-1:exon:21872;Parent=Msa0133450-mRNA-1
chr1_3 exon 64709174 64709372 64709174 ID=Msa0133450-mRNA-1:exon:21871;Parent=Msa0133450-mRNA-1
chr1_3 five_prime_UTR 64709280 64709372 64709280 ID=Msa0133450-mRNA-1:five_prime_utr;Parent=Msa0133450-mRNA-1
chr1_3 CDS 64709174 64709279 64709174 ID=Msa0133450-mRNA-1:cds;Parent=Msa0133450-mRNA-1
chr1_3 CDS 64707879 64708110 64707879 ID=Msa0133450-mRNA-1:cds;Parent=Msa0133450-mRNA-1
chr1_3 CDS 64707594 64707673 64707594 ID=Msa0133450-mRNA-1:cds;Parent=Msa0133450-mRNA-1
chr1_3 CDS 64707451 64707456 64707451 ID=Msa0133450-mRNA-1:cds;Parent=Msa0133450-mRNA-1
chr1_3 CDS 64707225 64707378 64707225 ID=Msa0133450-mRNA-1:cds;Parent=Msa0133450-mRNA-1
chr1_3 CDS 64705750 64705807 64705750 ID=Msa0133450-mRNA-1:cds;Parent=Msa0133450-mRNA-1
Gene Sequence

>Msa0133450

ATGTGGCCATTCAGCAAGAAAGGTGTTTCTGGTTTTTCATGGAACTCAACTGCTGAACAAGTTACACATGGAATCGATGCTACTGGTCTCACTGCCATTGTTACTGGAGCATCCAGCGGCATTGGCGCTGAGACTACTCGTGTCCTTGCTTTGCGCGGTGTTCATGTGATTATGGGTGTGAGAAACATGGTTGCTGCTAAAGATGTCAAAGATACAATACTCAAGGACATTCCCTCTGCTAAACTTGATGCCATGGAGTTAGATCTTAGCTCATTGGACTCTGTCAAGAAATTTGCATCTGAGTATAATTCTTCTGGTCGTCCGCTGAACATCTTGATAAATAATGCAGGAATTATGGCATGCCCTTTCAGTTTGTCCAAAGACAACATTGAACTGCAGTTTGCCACCAATCACATAGTTTACAGTCATTTTCTCTTGACAAATCTTTTGTTGGATACTATGAAGAAAACGACACGCAAAAGTAAGAAAGAAGGAAGAATTGTTAATGTCGCCTCAGAGGCTCACAGGTTCGCATATTCTGAAGGAATCCGTTTTGATAAAATCAATGACGAATCAAGTGTGTATGTATATGTCTATGCTTTAGCATTGAGAGTTGTATCTTTGAATTCAATATAA

Protein sequence

>Msa0133450

MWPFSKKGVSGFSWNSTAEQVTHGIDATGLTAIVTGASSGIGAETTRVLALRGVHVIMGVRNMVAAKDVKDTILKDIPSAKLDAMELDLSSLDSVKKFASEYNSSGRPLNILINNAGIMACPFSLSKDNIELQFATNHIVYSHFLLTNLLLDTMKKTTRKSKKEGRIVNVASEAHRFAYSEGIRFDKINDESSVYVYVYALALRVVSLNSI*