AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039510 MtrunA17_Chr1g0203711 95.056 445 17 3 1 444 1 441 0.0 795
Msa0039510 MtrunA17_Chr6g0472551 63.326 469 134 14 1 444 1 456 1.69e-156 451
Msa0039510 MtrunA17_Chr4g0057321 37.736 424 194 13 3 404 7 382 1.23e-50 177
Msa0039510 MtrunA17_Chr8g0340761 35.714 420 187 13 3 394 7 371 2.83e-31 124
Msa0039510 MtrunA17_Chr1g0204901 36.644 292 135 7 118 404 135 381 2.05e-30 122
Msa0039510 MtrunA17_Chr1g0166431 32.199 382 188 13 30 404 49 366 9.20e-28 114
Msa0039510 MtrunA17_Chr8g0346021 30.628 382 158 13 93 394 112 466 3.15e-23 102
Msa0039510 MtrunA17_Chr7g0273951 33.091 275 125 9 121 394 108 324 1.30e-21 96.3
Msa0039510 MtrunA17_Chr4g0020671 31.818 176 98 5 25 198 25 180 8.95e-20 91.3
Msa0039510 MtrunA17_Chr8g0389781 54.286 140 51 3 44 179 56 186 2.33e-19 90.1
Msa0039510 MtrunA17_Chr1g0200161 32.727 165 78 4 118 250 140 303 5.98e-19 89.0
Msa0039510 MtrunA17_Chr8g0371131 56.338 71 31 0 118 188 70 140 4.63e-16 75.1
Msa0039510 MtrunA17_Chr4g0025441 71.698 53 15 0 118 170 95 147 5.71e-16 79.7
Msa0039510 MtrunA17_Chr2g0330921 55.714 70 31 0 118 187 96 165 2.97e-15 77.0
Msa0039510 MtrunA17_Chr4g0045641 44.776 67 37 0 118 184 145 211 4.00e-15 77.4
Msa0039510 MtrunA17_Chr6g0462191 52.846 123 50 1 66 188 62 176 4.05e-15 77.0
Msa0039510 MtrunA17_Chr1g0181581 28.571 308 172 11 118 389 115 410 1.98e-14 75.1
Msa0039510 MtrunA17_Chr7g0273861 34.503 171 88 5 35 191 37 197 2.89e-14 74.3
Msa0039510 MtrunA17_Chr7g0263731 27.632 380 219 12 49 389 49 411 9.71e-14 72.8
Msa0039510 MtrunA17_Chr4g0060381 53.846 65 29 1 118 182 100 163 1.04e-13 73.2
Msa0039510 MtrunA17_Chr1g0146931 63.889 72 26 0 118 189 121 192 1.45e-13 72.4
Msa0039510 MtrunA17_Chr3g0126901 67.308 52 17 0 119 170 112 163 1.64e-13 72.0
Msa0039510 MtrunA17_Chr1g0156121 34.286 140 85 4 117 250 122 260 1.94e-13 72.8
Msa0039510 MtrunA17_Chr3g0135851 62.264 53 20 0 118 170 90 142 4.53e-13 70.9
Msa0039510 MtrunA17_Chr1g0172611 44.755 143 69 3 25 167 21 153 1.12e-12 69.3
Msa0039510 MtrunA17_Chr5g0416161 43.750 80 43 1 114 193 116 193 7.19e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039510 AT5G62070.1 46.420 433 134 19 1 410 1 358 1.50e-58 197
Msa0039510 AT5G07240.1 43.508 439 161 14 1 426 1 365 2.14e-55 189
Msa0039510 AT5G07240.2 43.508 439 161 14 1 426 47 411 6.70e-55 189
Msa0039510 AT4G23060.1 35.458 502 228 15 3 439 7 477 1.02e-38 146
Msa0039510 AT3G16490.1 38.416 341 143 13 59 394 52 330 4.25e-30 120
Msa0039510 AT1G01110.2 34.421 337 152 12 118 394 120 447 5.52e-28 116
Msa0039510 AT4G00820.1 32.857 350 135 15 118 394 131 453 1.90e-26 112
Msa0039510 AT1G51960.1 55.056 89 35 1 97 185 83 166 9.82e-20 90.5
Msa0039510 AT4G14750.1 36.774 155 73 3 30 184 41 170 1.28e-19 90.9
Msa0039510 AT5G03040.1 25.668 374 196 10 65 389 66 406 2.52e-19 90.5
Msa0039510 AT5G03040.3 25.668 374 196 10 65 389 66 406 2.52e-19 90.5
Msa0039510 AT5G03040.2 25.668 374 196 10 65 389 66 406 2.52e-19 90.5
Msa0039510 AT4G14750.2 36.774 155 73 3 30 184 100 229 2.87e-19 90.1
Msa0039510 AT4G14750.3 36.774 155 73 3 30 184 100 229 3.27e-19 90.1
Msa0039510 AT3G52290.1 57.143 70 30 0 118 187 107 176 9.91e-19 88.6
Msa0039510 AT3G49260.1 56.944 72 31 0 118 189 119 190 2.62e-17 84.3
Msa0039510 AT3G49260.4 56.944 72 31 0 118 189 119 190 2.62e-17 84.3
Msa0039510 AT3G49260.2 56.944 72 31 0 118 189 119 190 2.62e-17 84.3
Msa0039510 AT3G49260.3 56.944 72 31 0 118 189 119 190 2.63e-17 84.3
Msa0039510 AT3G49380.1 37.580 157 67 3 30 186 52 177 9.02e-17 81.6
Msa0039510 AT3G59690.2 53.226 62 29 0 123 184 173 234 1.64e-16 82.0
Msa0039510 AT3G59690.1 53.226 62 29 0 123 184 173 234 1.64e-16 82.0
Msa0039510 AT1G18840.1 32.624 141 89 3 115 249 105 245 2.95e-16 81.6
Msa0039510 AT1G18840.3 32.624 141 89 3 115 249 105 245 2.95e-16 81.6
Msa0039510 AT1G18840.2 32.624 141 89 3 115 249 105 245 2.95e-16 81.6
Msa0039510 AT4G10640.1 29.714 350 170 17 121 431 102 414 6.97e-16 79.7
Msa0039510 AT1G17480.1 54.412 68 31 0 114 181 89 156 6.71e-15 76.3
Msa0039510 AT1G74690.1 31.757 148 81 4 115 249 109 249 7.44e-15 77.0
Msa0039510 AT3G51380.1 59.677 62 25 0 118 179 36 97 1.33e-14 70.1
Msa0039510 AT4G29150.1 56.250 64 28 0 118 181 130 193 1.93e-14 75.1
Msa0039510 AT2G26180.1 67.925 53 17 0 118 170 83 135 2.01e-14 75.1
Msa0039510 AT3G22190.3 67.925 53 17 0 118 170 87 139 3.12e-14 74.7
Msa0039510 AT3G22190.2 67.925 53 17 0 118 170 87 139 3.12e-14 74.7
Msa0039510 AT3G22190.4 67.925 53 17 0 118 170 87 139 3.12e-14 74.7
Msa0039510 AT3G22190.1 67.925 53 17 0 118 170 87 139 3.12e-14 74.7
Msa0039510 AT1G72670.1 57.377 61 26 0 119 179 93 153 7.42e-14 73.6
Msa0039510 AT2G43680.4 44.000 75 41 1 111 184 313 387 7.48e-14 74.3
Msa0039510 AT2G43680.2 44.000 75 41 1 111 184 313 387 7.48e-14 74.3
Msa0039510 AT2G43680.3 44.000 75 41 1 111 184 313 387 7.48e-14 74.3
Msa0039510 AT2G43680.5 44.000 75 41 1 111 184 313 387 7.48e-14 74.3
Msa0039510 AT2G43680.1 44.000 75 41 1 111 184 314 388 7.76e-14 74.3
Msa0039510 AT5G13460.1 29.412 170 105 4 20 184 17 176 2.50e-13 72.0
Msa0039510 AT1G19870.1 28.365 208 122 5 118 315 214 404 4.91e-13 71.6
Msa0039510 AT1G19870.2 30.348 201 127 6 118 315 31 221 5.23e-13 71.6
Msa0039510 AT3G09710.1 26.486 185 99 3 118 265 107 291 1.15e-11 67.0
Msa0039510 AT5G03960.3 60.784 51 20 0 115 165 104 154 2.09e-11 65.9
Msa0039510 AT5G03960.2 60.784 51 20 0 115 165 104 154 2.09e-11 65.9
Msa0039510 AT5G03960.1 60.784 51 20 0 115 165 103 153 2.14e-11 65.9
Msa0039510 AT3G09710.2 40.845 71 42 0 118 188 107 177 3.87e-11 65.5

Find 118 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCATAGTTGTCAAGATTT+TGG 0.144492 1_1:-69217209 Msa0039510:five_prime_UTR
TCAGTGTTTGCCATGTAATT+AGG 0.191553 1_1:+69211839 None:intergenic
GAATTGGAAGTAGCAATTTA+AGG 0.247387 1_1:-69211643 Msa0039510:CDS
TTCCAAAATCTTGACAACTA+TGG 0.254874 1_1:+69217207 None:intergenic
TGGCAAACACTGAATCTTCT+AGG 0.269467 1_1:-69211829 Msa0039510:CDS
TGCATGTTTGTTGCGTTCTA+AGG 0.274169 1_1:+69216752 None:intergenic
GAGTGTTCATGGAGTTTCTT+AGG 0.278838 1_1:-69211878 Msa0039510:CDS
CGAGTCATCACCATTTCTAT+TGG 0.282357 1_1:+69217237 None:intergenic
GGTGGCGGTTGTGGTGGTGG+TGG 0.297959 1_1:+69216807 None:intergenic
AAGGCGGAGGGTGGCGGTTG+TGG 0.327152 1_1:+69216798 None:intergenic
GAAGTTGCAAGCACTGGTTC+GGG 0.327277 1_1:-69213101 Msa0039510:CDS
GAGGGTGGCGGTTGTGGTGG+TGG 0.330473 1_1:+69216804 None:intergenic
AATCTTCCTAAAATTTGAAT+TGG 0.331141 1_1:+69212273 None:intergenic
CAGTGTTTGCCATGTAATTA+GGG 0.331564 1_1:+69211840 None:intergenic
TGTGGTTGCTCATATTCTTC+AGG 0.331662 1_1:+69212610 None:intergenic
TGAAGTTGCAAGCACTGGTT+CGG 0.362471 1_1:-69213102 Msa0039510:CDS
CTACAAGAAGTGAGTGTTCA+TGG 0.367097 1_1:-69211889 Msa0039510:CDS
AAACCCATGGTTCAACTCAT+TGG 0.368169 1_1:+69216957 None:intergenic
GCGGAGGGTGGCGGTTGTGG+TGG 0.370352 1_1:+69216801 None:intergenic
AGGAATATAGTTCTACTAGA+AGG 0.389996 1_1:-69211763 Msa0039510:CDS
CATGAACACTCACTTCTTGT+AGG 0.394316 1_1:+69211890 None:intergenic
TCACTTCTTGTAGGTGTAAA+GGG 0.394452 1_1:+69211899 None:intergenic
GCGTGGTCAGTTACGGTTGC+CGG 0.397020 1_1:-69216613 Msa0039510:CDS
CTGATGAACATAAAATTGAT+AGG 0.400812 1_1:-69212150 Msa0039510:CDS
TGCTGCAGCTAGAGCGGCCT+CGG 0.401380 1_1:+69216698 None:intergenic
ATGATTTGTAAATCATGAAT+TGG 0.402034 1_1:-69211389 Msa0039510:three_prime_UTR
GTTGAGAGCACTTAAAGCTT+TGG 0.405805 1_1:-69213125 Msa0039510:CDS
CATGTCTATAGTACAAAATT+CGG 0.414346 1_1:-69212586 Msa0039510:CDS
CATCCAATGGTCTAACCAAT+TGG 0.414937 1_1:+69212225 None:intergenic
GAAGAAGCAGAAAATGTTTG+TGG 0.415494 1_1:+69211953 None:intergenic
AGTGAGAATGAATTAAGTTA+AGG 0.418755 1_1:+69217021 None:intergenic
GTCAGCTTTCCGTGGTTACT+TGG 0.423931 1_1:-69216565 Msa0039510:intron
TGCGCGTGGGGTTGAAACTT+TGG 0.427504 1_1:-69217168 Msa0039510:five_prime_UTR
AGGGAGTGGAGGAATCAAAT+TGG 0.431194 1_1:+69216772 None:intergenic
TTTCAAGGTCTTTGGGAAGT+GGG 0.434323 1_1:-69211737 Msa0039510:CDS
TGCAGCACACGCTGCTGCTG+AGG 0.435144 1_1:-69216682 Msa0039510:CDS
ACAAAGCGCGTGGTCAGTTA+CGG 0.436350 1_1:-69216620 Msa0039510:CDS
CTCACAAGCAGTGGCGTGGC+GGG 0.436604 1_1:-69216651 Msa0039510:CDS
CAGACAATGATTCTGATTCA+AGG 0.437973 1_1:-69211703 Msa0039510:CDS
TCCTCAAAATGCCTTTGTCT+TGG 0.443738 1_1:+69211782 None:intergenic
CTCACTTCTTGTAGGTGTAA+AGG 0.446179 1_1:+69211898 None:intergenic
GTGGTTGCTCATATTCTTCA+GGG 0.446728 1_1:+69212611 None:intergenic
GCTCCAATTGGTTAGACCAT+TGG 0.447342 1_1:-69212228 Msa0039510:CDS
TCCTTCATACCCAACGGATA+AGG 0.447927 1_1:-69211297 Msa0039510:three_prime_UTR
ACCTTATCCGTTGGGTATGA+AGG 0.449300 1_1:+69211296 None:intergenic
TCAAAGTGTTCCAATAGAAA+TGG 0.451112 1_1:-69217247 Msa0039510:five_prime_UTR
CAACCCCACGCGCAAATACA+AGG 0.454320 1_1:+69217177 None:intergenic
AACAAGAGACGATGGAGCTT+CGG 0.454907 1_1:-69216858 Msa0039510:CDS
TTAGGGTAACCTTATCCGTT+GGG 0.455413 1_1:+69211288 None:intergenic
CTCTGGTTACCCTAATTACA+TGG 0.469823 1_1:-69211849 Msa0039510:CDS
TTTGTTGCGTTCTAAGGGAG+TGG 0.472253 1_1:+69216758 None:intergenic
TTAACGGTAGCGATCTCCTC+CGG 0.472959 1_1:+69216594 None:intergenic
ATCAAATTGGTTGAAGGCGG+AGG 0.474549 1_1:+69216785 None:intergenic
AGAGTGTCGGAGACTAGAAT+TGG 0.475807 1_1:+69217122 None:intergenic
TTTAGGGTAACCTTATCCGT+TGG 0.484262 1_1:+69211287 None:intergenic
CACTGAATCTTCTAGGGCTA+AGG 0.485595 1_1:-69211822 Msa0039510:CDS
TTTGGTGAAGTTGCAAGCAC+TGG 0.485657 1_1:-69213107 Msa0039510:CDS
AACCACGGTTTGGCTCCAAT+TGG 0.486425 1_1:-69212240 Msa0039510:CDS
AGCACACGCTGCTGCTGAGG+TGG 0.490453 1_1:-69216679 Msa0039510:CDS
TGCTGCTGTTGCCGCAGCAA+CGG 0.494936 1_1:+69216725 None:intergenic
TTCAAGGTCTTTGGGAAGTG+GGG 0.496580 1_1:-69211736 Msa0039510:CDS
TGGTTGAAGGCGGAGGGTGG+CGG 0.505689 1_1:+69216792 None:intergenic
GAGTCAGAGAAACCACGGTT+TGG 0.506667 1_1:-69212250 Msa0039510:CDS
GGTTCATCCTCCGATGGATC+GGG 0.520293 1_1:-69216903 Msa0039510:CDS
GCATGTTTGTTGCGTTCTAA+GGG 0.520488 1_1:+69216753 None:intergenic
GGATTCTCGAAGTAGATACT+TGG 0.520535 1_1:-69212129 Msa0039510:CDS
GGGTTCATCCTCCGATGGAT+CGG 0.522185 1_1:-69216904 Msa0039510:CDS
GGAGGAATCAAATTGGTTGA+AGG 0.530076 1_1:+69216779 None:intergenic
ACTTCCCAAAGACCTTGAAA+AGG 0.531733 1_1:+69211740 None:intergenic
AGTTTCTTAGGTGGATACTC+TGG 0.536101 1_1:-69211866 Msa0039510:CDS
GATCCATCGGAGGATGAACC+CGG 0.542081 1_1:+69216906 None:intergenic
GGCCCTTGTATTTGCGCGTG+GGG 0.547724 1_1:-69217180 Msa0039510:five_prime_UTR
AGAAAACTGCAGATATGCTC+AGG 0.549370 1_1:-69213063 Msa0039510:CDS
AGAATACACTACAAAAGTAC+AGG 0.551084 1_1:+69211466 None:intergenic
AGCGTGTGCTGCAGCTAGAG+CGG 0.555370 1_1:+69216692 None:intergenic
GCTTCTTCAAGAAATGGAAG+TGG 0.558785 1_1:-69211938 Msa0039510:CDS
CGGAGTTCTCTTGCATCCAA+TGG 0.559936 1_1:+69212212 None:intergenic
ACATGCAATCGCCGTTGCTG+CGG 0.564729 1_1:-69216736 Msa0039510:CDS
AAAAGTGGTTGAAGAAGAAG+TGG 0.565354 1_1:+69217061 None:intergenic
AGGCCCTTGTATTTGCGCGT+GGG 0.568877 1_1:-69217181 Msa0039510:five_prime_UTR
GGCAAACACTGAATCTTCTA+GGG 0.574429 1_1:-69211828 Msa0039510:CDS
ATAGTACTGTACCTTGAGGA+TGG 0.576723 1_1:+69212555 None:intergenic
AAGGCCCTTGTATTTGCGCG+TGG 0.576734 1_1:-69217182 Msa0039510:five_prime_UTR
AAGTCGTGTGCACTTGTCAT+CGG 0.578846 1_1:-69212999 Msa0039510:CDS
GTCTATAGTACAAAATTCGG+TGG 0.582232 1_1:-69212583 Msa0039510:CDS
AATTGGTTGAAGGCGGAGGG+TGG 0.582520 1_1:+69216789 None:intergenic
TCAAATTGGTTGAAGGCGGA+GGG 0.587160 1_1:+69216786 None:intergenic
CTATTAAAACGACTCAAAGC+AGG 0.587404 1_1:+69211665 None:intergenic
AAACCAATGAGTTGAACCAT+GGG 0.591599 1_1:-69216960 Msa0039510:exon
CGGTGGATCTTCCATCCTCA+AGG 0.592734 1_1:-69212566 Msa0039510:intron
AAAACCAATGAGTTGAACCA+TGG 0.594095 1_1:-69216961 Msa0039510:exon
AAACCGGGTTCATCCTCCGA+TGG 0.604772 1_1:-69216909 Msa0039510:CDS
TCGGAGACTAGAATTGGTCA+TGG 0.604931 1_1:+69217128 None:intergenic
CACAAAGTGCACCAAGACAA+AGG 0.608130 1_1:-69211793 Msa0039510:CDS
TGTTCATGGAGTTTCTTAGG+TGG 0.609267 1_1:-69211875 Msa0039510:CDS
GTTGCGTTCTAAGGGAGTGG+AGG 0.612069 1_1:+69216761 None:intergenic
ACTCACAAGCAGTGGCGTGG+CGG 0.612815 1_1:-69216652 Msa0039510:CDS
CAGACTCACAAGCAGTGGCG+TGG 0.617443 1_1:-69216655 Msa0039510:CDS
GCTCAGGCGTATGCAAACAT+TGG 0.619659 1_1:-69213047 Msa0039510:CDS
AAAATACAGTCAGCTTTCCG+TGG 0.623749 1_1:-69216573 Msa0039510:CDS
TTTGTACTATAGACATGATG+TGG 0.627968 1_1:+69212592 None:intergenic
AAGACAACAACAAGAGACGA+TGG 0.630191 1_1:-69216866 Msa0039510:CDS
TGGTCAGTTACGGTTGCCGG+AGG 0.640779 1_1:-69216610 Msa0039510:CDS
GGAATCAAATTGGTTGAAGG+CGG 0.641470 1_1:+69216782 None:intergenic
GGCAACAGCAGCAGTCGCCG+AGG 0.641505 1_1:-69216715 Msa0039510:CDS
TCTAGCTCCTTCATACCCAA+CGG 0.647225 1_1:-69211303 Msa0039510:three_prime_UTR
AACCCCACGCGCAAATACAA+GGG 0.647665 1_1:+69217178 None:intergenic
GAGTCGCCGGAGAAAACCCA+TGG 0.652244 1_1:+69216944 None:intergenic
TTTGACTCACCAAGTAACCA+CGG 0.654192 1_1:+69216556 None:intergenic
AACCAATTGGAGCCAAACCG+TGG 0.656827 1_1:+69212238 None:intergenic
TATACTTGTATAGAGAGTGT+CGG 0.657753 1_1:+69217109 None:intergenic
AAAGTGGTTGAAGAAGAAGT+GGG 0.663309 1_1:+69217062 None:intergenic
GGAAGTAGTAACAAAGCGCG+TGG 0.672619 1_1:-69216630 Msa0039510:CDS
GTGGTCAGACTCACAAGCAG+TGG 0.674150 1_1:-69216660 Msa0039510:CDS
ATTGGTGCGACTACAGACAA+AGG 0.678626 1_1:-69213029 Msa0039510:CDS
AGATTGAGTCAGAGAAACCA+CGG 0.681117 1_1:-69212255 Msa0039510:CDS
AAGTTGCAAGCACTGGTTCG+GGG 0.686816 1_1:-69213100 Msa0039510:CDS
ATTATGAATTGTGACTCACA+TGG 0.721832 1_1:-69211331 Msa0039510:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAATAGCAAT+AGG + chr1_1:69212335-69212354 None:intergenic 10.0%
!! TGAAATTAACATATATTTAT+TGG - chr1_1:69212527-69212546 Msa0039510:intron 10.0%
!!! CTTTTAATTTTTTTTAAACT+TGG + chr1_1:69212561-69212580 None:intergenic 10.0%
!!! ATTAAAATATGTGTAATTTT+AGG - chr1_1:69212640-69212659 Msa0039510:intron 10.0%
!!! TTAAAATATGTGTAATTTTA+GGG - chr1_1:69212641-69212660 Msa0039510:intron 10.0%
!! ATAAAATTAATCTTGAATAT+GGG + chr1_1:69213746-69213765 None:intergenic 10.0%
!!! TTTTATATTTTAGTCATAAA+AGG - chr1_1:69214150-69214169 Msa0039510:intron 10.0%
!! AACATTTAAATTGAATTATT+AGG - chr1_1:69215800-69215819 Msa0039510:intron 10.0%
!!! ATTTGCTTTTTTTTTTTTTT+GGG - chr1_1:69217008-69217027 Msa0039510:five_prime_UTR 10.0%
!!! AATTTTGACAATTAAAATGT+AGG + chr1_1:69212033-69212052 None:intergenic 15.0%
!! CATATTCATTAAATAACATA+TGG - chr1_1:69212429-69212448 Msa0039510:intron 15.0%
!! TTAACATATATTTATTGGAT+CGG - chr1_1:69212532-69212551 Msa0039510:intron 15.0%
!!! TAAAATATGTGTAATTTTAG+GGG - chr1_1:69212642-69212661 Msa0039510:intron 15.0%
!! TTAATATAGAAACTTTGTAT+TGG + chr1_1:69212788-69212807 None:intergenic 15.0%
!!! TTTTTTGTCAAATAGTTTAA+TGG + chr1_1:69212980-69212999 None:intergenic 15.0%
!! GAAATAAAAAGAAAAATTCT+TGG + chr1_1:69213196-69213215 None:intergenic 15.0%
!! CAATTTAGTAAAAAAATTCA+GGG - chr1_1:69213393-69213412 Msa0039510:intron 15.0%
!!! TATATAAAATGCAACATTTT+CGG + chr1_1:69213567-69213586 None:intergenic 15.0%
!! CATAAAATTAATCTTGAATA+TGG + chr1_1:69213747-69213766 None:intergenic 15.0%
!!! CATTTTAATAAAAGAGTTAA+TGG - chr1_1:69213800-69213819 Msa0039510:intron 15.0%
!!! ATTATTTGCTAATTCATTTA+TGG + chr1_1:69214120-69214139 None:intergenic 15.0%
!! ATAAAGAAGAAATAAAACAA+GGG + chr1_1:69214791-69214810 None:intergenic 15.0%
!! ACAAAACAAAAATGAATAAA+AGG + chr1_1:69214898-69214917 None:intergenic 15.0%
!!! TATTCATTTTTGTTTTGTTT+TGG - chr1_1:69214900-69214919 Msa0039510:intron 15.0%
!! AAATTTATCTACTTAATTGT+AGG - chr1_1:69215908-69215927 Msa0039510:intron 15.0%
!!! CATAATTTGAAGTAATTAAT+TGG + chr1_1:69216019-69216038 None:intergenic 15.0%
!! CAAAAAAAAAAAAAAGCAAA+TGG + chr1_1:69217009-69217028 None:intergenic 15.0%
!!! CATTTGCTTTTTTTTTTTTT+TGG - chr1_1:69217007-69217026 Msa0039510:five_prime_UTR 15.0%
!! AATTATGTCAACCAATAAAA+AGG - chr1_1:69212142-69212161 Msa0039510:CDS 20.0%
!!! AAAGTATTTGACCTTTTTAT+TGG + chr1_1:69212156-69212175 None:intergenic 20.0%
!! AATAGGATAGAGTTTAATTA+TGG + chr1_1:69212318-69212337 None:intergenic 20.0%
!! TTTGCTTATAAAAATGAGAA+TGG + chr1_1:69212397-69212416 None:intergenic 20.0%
!! CTTCTCTGTAAAAATAAAAA+GGG + chr1_1:69212850-69212869 None:intergenic 20.0%
!!! ATGAGTAATATTTTGTTTCA+TGG - chr1_1:69212871-69212890 Msa0039510:intron 20.0%
!!! TGAGTAATATTTTGTTTCAT+GGG - chr1_1:69212872-69212891 Msa0039510:intron 20.0%
!! GAATTTGATTATAATGTGTT+TGG + chr1_1:69213277-69213296 None:intergenic 20.0%
!!! TGCTTTTTTATTACTTTCTT+TGG - chr1_1:69213352-69213371 Msa0039510:intron 20.0%
!!! TTTTATTACTTTCTTTGGAT+CGG - chr1_1:69213357-69213376 Msa0039510:intron 20.0%
!! GCAATTTAGTAAAAAAATTC+AGG - chr1_1:69213392-69213411 Msa0039510:intron 20.0%
!!! AGATTGTTACTTTGTATAAT+GGG - chr1_1:69213590-69213609 Msa0039510:intron 20.0%
!! AATAAAAGAGTTAATGGAAT+AGG - chr1_1:69213806-69213825 Msa0039510:intron 20.0%
!! TTTAGTCATAAAAGGAAATT+TGG - chr1_1:69214158-69214177 Msa0039510:intron 20.0%
!!! ATGTTTTTTACCTTTTGAAT+TGG + chr1_1:69214453-69214472 None:intergenic 20.0%
!! CATAAAGAAGAAATAAAACA+AGG + chr1_1:69214792-69214811 None:intergenic 20.0%
!! TTTATCATTAAAAAACCGAT+TGG - chr1_1:69214849-69214868 Msa0039510:intron 20.0%
!!! TTTTGTTTTGGATTAGTATA+TGG - chr1_1:69214912-69214931 Msa0039510:intron 20.0%
!! AAGTAATGTTACATAAAACT+TGG + chr1_1:69215004-69215023 None:intergenic 20.0%
!! AGATAAAATAGTTTAAAGAC+AGG + chr1_1:69215041-69215060 None:intergenic 20.0%
!!! CAACATATTTTGATGAATTT+TGG - chr1_1:69215381-69215400 Msa0039510:intron 20.0%
!!! ATATTTTGATGAATTTTGGA+AGG - chr1_1:69215385-69215404 Msa0039510:intron 20.0%
!!! AAAAGAAATTGTTTTTTGAC+TGG - chr1_1:69215839-69215858 Msa0039510:intron 20.0%
!! AGATAAATTTACAACACAAA+AGG + chr1_1:69215898-69215917 None:intergenic 20.0%
!! TCTATTTGAAGAATAAACAA+TGG - chr1_1:69216092-69216111 Msa0039510:intron 20.0%
!!! TTTTTTTTTTTTTGGGTGTT+CGG - chr1_1:69217015-69217034 Msa0039510:five_prime_UTR 20.0%
!!! ATGATTTGTAAATCATGAAT+TGG - chr1_1:69217154-69217173 Msa0039510:five_prime_UTR 20.0%
! AGTGAGAATGAATTAAGTTA+AGG + chr1_1:69211525-69211544 None:intergenic 25.0%
!!! GTTTTTTCTTTGACTTTTGA+AGG + chr1_1:69211567-69211586 None:intergenic 25.0%
! ATTATTCATGAAACATGCAT+TGG - chr1_1:69212116-69212135 Msa0039510:CDS 25.0%
! AAAAATGAGAATGGAGTATA+TGG + chr1_1:69212388-69212407 None:intergenic 25.0%
! TATTGGAAAATGATGAAAAG+TGG + chr1_1:69212771-69212790 None:intergenic 25.0%
! CCTTCTCTGTAAAAATAAAA+AGG + chr1_1:69212851-69212870 None:intergenic 25.0%
!!! CCTTTTTATTTTTACAGAGA+AGG - chr1_1:69212848-69212867 Msa0039510:intron 25.0%
! CATAATATATATGAGAAACG+AGG - chr1_1:69212920-69212939 Msa0039510:intron 25.0%
! CAAAATGATCTGCATATATA+TGG - chr1_1:69213035-69213054 Msa0039510:CDS 25.0%
!! TGTTTAATTTCTCTGTTGTA+TGG - chr1_1:69213105-69213124 Msa0039510:CDS 25.0%
! AAAATTCTTGGATTTGAATG+TGG + chr1_1:69213184-69213203 None:intergenic 25.0%
! AAGAAAAGTTCCAAAAACTT+AGG + chr1_1:69213228-69213247 None:intergenic 25.0%
! TTTGATTATAATGTGTTTGG+TGG + chr1_1:69213274-69213293 None:intergenic 25.0%
!! ATAATGCACTCTTAATTTTC+AGG + chr1_1:69213444-69213463 None:intergenic 25.0%
!! ATTTTCGGATGAAAATTACA+GGG + chr1_1:69213552-69213571 None:intergenic 25.0%
!!! GAGATTGTTACTTTGTATAA+TGG - chr1_1:69213589-69213608 Msa0039510:intron 25.0%
! ACACTATACTATAATTGTAG+AGG + chr1_1:69213618-69213637 None:intergenic 25.0%
! ATGATAGTTACCTTTATATG+AGG - chr1_1:69214219-69214238 Msa0039510:intron 25.0%
!!! TTTTAGTTTGCCTCATATAA+AGG + chr1_1:69214232-69214251 None:intergenic 25.0%
! TTATATGAGGCAAACTAAAA+TGG - chr1_1:69214232-69214251 Msa0039510:intron 25.0%
! ATGTAATGTCACAATGTAAT+AGG - chr1_1:69214340-69214359 Msa0039510:intron 25.0%
!!! GTAACCACTTATTTTGTTTT+TGG - chr1_1:69214381-69214400 Msa0039510:intron 25.0%
! AAATAAAACAAGGGAATAGA+AGG + chr1_1:69214782-69214801 None:intergenic 25.0%
! AACAATCAAATTGAACCAAT+CGG + chr1_1:69214867-69214886 None:intergenic 25.0%
! TTCAATTTGATTGTTACTCT+TGG - chr1_1:69214872-69214891 Msa0039510:intron 25.0%
! TTGGAAGACTTATTCAATTT+GGG + chr1_1:69214985-69215004 None:intergenic 25.0%
! GTTTAAAGACAGGATAAAAA+TGG + chr1_1:69215031-69215050 None:intergenic 25.0%
!!! CTTATTTTCATAAGTTCTTC+AGG + chr1_1:69215258-69215277 None:intergenic 25.0%
!!! AAAAGAATTTGCTACTTACA+GGG + chr1_1:69215607-69215626 None:intergenic 25.0%
!!! AAAAAGAATTTGCTACTTAC+AGG + chr1_1:69215608-69215627 None:intergenic 25.0%
!! ACATAATTTTGCAAAATCGT+AGG - chr1_1:69215710-69215729 Msa0039510:intron 25.0%
!! ACTGGCTTAAAAATAATGAT+TGG - chr1_1:69215857-69215876 Msa0039510:intron 25.0%
! CATGTCTATAGTACAAAATT+CGG - chr1_1:69215957-69215976 Msa0039510:intron 25.0%
! AGTAATTCTTATCACTTTGA+TGG - chr1_1:69216063-69216082 Msa0039510:intron 25.0%
! CTGATGAACATAAAATTGAT+AGG - chr1_1:69216393-69216412 Msa0039510:intron 25.0%
!!! TTCTCATTTTTATTCAACTG+TGG + chr1_1:69216443-69216462 None:intergenic 25.0%
!!! TTGAGTCGTTTTAATAGAAT+TGG - chr1_1:69216884-69216903 Msa0039510:CDS 25.0%
!! TTTCTATTTTGTGGAAAAAG+TGG + chr1_1:69216972-69216991 None:intergenic 25.0%
!!! TGTCTCTTTTTTCTATTTTG+TGG + chr1_1:69216981-69217000 None:intergenic 25.0%
! TCAAAGTGTTCCAATAGAAA+TGG - chr1_1:69211296-69211315 Msa0039510:three_prime_UTR 30.0%
! ATCCATAGTTGTCAAGATTT+TGG - chr1_1:69211334-69211353 Msa0039510:three_prime_UTR 30.0%
TTCCAAAATCTTGACAACTA+TGG + chr1_1:69211339-69211358 None:intergenic 30.0%
!! TTGTCAAGATTTTGGAAGAA+AGG - chr1_1:69211342-69211361 Msa0039510:three_prime_UTR 30.0%
! TATACTTGTATAGAGAGTGT+CGG + chr1_1:69211437-69211456 None:intergenic 30.0%
! AAGAAGTGTGAATGAAAAAG+TGG + chr1_1:69211500-69211519 None:intergenic 30.0%
!! TTTCTTTGACTTTTGAAGGA+AGG + chr1_1:69211563-69211582 None:intergenic 30.0%
!! GAAAGCTGACTGTATTTTAA+CGG + chr1_1:69211968-69211987 None:intergenic 30.0%
GGATAGAGTTTAATTATGGA+AGG + chr1_1:69212314-69212333 None:intergenic 30.0%
!! AATATGTGTAATTTTAGGGG+TGG - chr1_1:69212645-69212664 Msa0039510:intron 30.0%
!! ATATGTGTAATTTTAGGGGT+GGG - chr1_1:69212646-69212665 Msa0039510:intron 30.0%
TCCACAATATTACTGTAAGA+GGG + chr1_1:69213078-69213097 None:intergenic 30.0%
TTCCACAATATTACTGTAAG+AGG + chr1_1:69213079-69213098 None:intergenic 30.0%
GGAAATGACATAAAGCAAAT+TGG + chr1_1:69213156-69213175 None:intergenic 30.0%
! CATTTTCGGATGAAAATTAC+AGG + chr1_1:69213553-69213572 None:intergenic 30.0%
TAAAGAGAGAAACAACTCTA+TGG - chr1_1:69213662-69213681 Msa0039510:intron 30.0%
TGAAGGAAAAAAATTTCAGG+TGG - chr1_1:69213913-69213932 Msa0039510:intron 30.0%
! GAAGGAAAAAAATTTCAGGT+GGG - chr1_1:69213914-69213933 Msa0039510:intron 30.0%
TCACATCTATCCAAATATGT+GGG + chr1_1:69214051-69214070 None:intergenic 30.0%
TATCATAACTCTTTGTCTAG+AGG + chr1_1:69214205-69214224 None:intergenic 30.0%
AGGTAAAAAACATTCCTTTG+TGG - chr1_1:69214460-69214479 Msa0039510:intron 30.0%
GGTAAAAAACATTCCTTTGT+GGG - chr1_1:69214461-69214480 Msa0039510:intron 30.0%
ACACTATAATACTAGAGAGA+GGG - chr1_1:69214574-69214593 Msa0039510:intron 30.0%
GCTGAAAATCAAAAGATAGT+TGG + chr1_1:69214640-69214659 None:intergenic 30.0%
AATTTGAGAAATGACAAGCA+AGG + chr1_1:69214706-69214725 None:intergenic 30.0%
AAAGAACAATTAGTACCATG+AGG + chr1_1:69214832-69214851 None:intergenic 30.0%
TGGAAGACTTATTCAATTTG+GGG + chr1_1:69214984-69215003 None:intergenic 30.0%
CTTGGAAGACTTATTCAATT+TGG + chr1_1:69214986-69215005 None:intergenic 30.0%
CTTCTTACTCTGAGTAAAAA+TGG + chr1_1:69215074-69215093 None:intergenic 30.0%
! CATTTTTACTCAGAGTAAGA+AGG - chr1_1:69215072-69215091 Msa0039510:intron 30.0%
!!! TGTTATGTATGTGCTGTTTT+AGG - chr1_1:69215764-69215783 Msa0039510:intron 30.0%
AATTTACAACACAAAAGGAG+AGG + chr1_1:69215893-69215912 None:intergenic 30.0%
TTTGTACTATAGACATGATG+TGG + chr1_1:69215954-69215973 None:intergenic 30.0%
CAATAAGTTATGCATGCATT+AGG + chr1_1:69216161-69216180 None:intergenic 30.0%
! GCAGTTCCAATTCAAATTTT+AGG - chr1_1:69216264-69216283 Msa0039510:intron 30.0%
!! GCTTTTGTTGAATGTTTTGA+TGG + chr1_1:69216494-69216513 None:intergenic 30.0%
! TTTTCTGCTTCTTCAAGAAA+TGG - chr1_1:69216599-69216618 Msa0039510:CDS 30.0%
! AGGAATATAGTTCTACTAGA+AGG - chr1_1:69216780-69216799 Msa0039510:CDS 30.0%
GAATTGGAAGTAGCAATTTA+AGG - chr1_1:69216900-69216919 Msa0039510:CDS 30.0%
! AGAATACACTACAAAAGTAC+AGG + chr1_1:69217080-69217099 None:intergenic 30.0%
ATTATGAATTGTGACTCACA+TGG - chr1_1:69217212-69217231 Msa0039510:five_prime_UTR 30.0%
AAAGTGGTTGAAGAAGAAGT+GGG + chr1_1:69211484-69211503 None:intergenic 35.0%
AAAAGTGGTTGAAGAAGAAG+TGG + chr1_1:69211485-69211504 None:intergenic 35.0%
! AAAACCAATGAGTTGAACCA+TGG - chr1_1:69211582-69211601 Msa0039510:three_prime_UTR 35.0%
! AAACCAATGAGTTGAACCAT+GGG - chr1_1:69211583-69211602 Msa0039510:three_prime_UTR 35.0%
ATTTGATGAGATGTACTGTG+TGG + chr1_1:69212284-69212303 None:intergenic 35.0%
TATTACTGTAAGAGGGATGA+AGG + chr1_1:69213071-69213090 None:intergenic 35.0%
TCCCTCTTACAGTAATATTG+TGG - chr1_1:69213074-69213093 Msa0039510:CDS 35.0%
TTGGATTTGAATGTGGCTAT+AGG + chr1_1:69213177-69213196 None:intergenic 35.0%
AGTTCCAAAAACTTAGGAGA+GGG + chr1_1:69213222-69213241 None:intergenic 35.0%
AAGTTCCAAAAACTTAGGAG+AGG + chr1_1:69213223-69213242 None:intergenic 35.0%
TTCTTTGGATCGGAAACATT+AGG - chr1_1:69213367-69213386 Msa0039510:intron 35.0%
TCTTTGGATCGGAAACATTA+GGG - chr1_1:69213368-69213387 Msa0039510:intron 35.0%
TACGTTAGAGTAGGATGTAT+GGG + chr1_1:69213504-69213523 None:intergenic 35.0%
ATACGTTAGAGTAGGATGTA+TGG + chr1_1:69213505-69213524 None:intergenic 35.0%
AGGAGTAGCAATAGATACAT+AGG - chr1_1:69213826-69213845 Msa0039510:intron 35.0%
TAGCAATAGATACATAGGAG+TGG - chr1_1:69213831-69213850 Msa0039510:intron 35.0%
GGGTGAAGGAAAAAAATTTC+AGG - chr1_1:69213910-69213929 Msa0039510:intron 35.0%
CACATCTATCCAAATATGTG+GGG + chr1_1:69214050-69214069 None:intergenic 35.0%
CTCACATCTATCCAAATATG+TGG + chr1_1:69214052-69214071 None:intergenic 35.0%
CACATATTTGGATAGATGTG+AGG - chr1_1:69214050-69214069 Msa0039510:intron 35.0%
!! GAAATTTGGTAGTCTTGTGA+GGG - chr1_1:69214172-69214191 Msa0039510:intron 35.0%
GCAGCCAAAAACAAAATAAG+TGG + chr1_1:69214388-69214407 None:intergenic 35.0%
!!! ATTTTGTTTTTGGCTGCGTA+TGG - chr1_1:69214391-69214410 Msa0039510:intron 35.0%
!!! TTTTGTTTTTGGCTGCGTAT+GGG - chr1_1:69214392-69214411 Msa0039510:intron 35.0%
CTTTGCTTTGCCAATTCAAA+AGG - chr1_1:69214440-69214459 Msa0039510:intron 35.0%
AACATTCCTTTGTGGGAAAA+AGG - chr1_1:69214468-69214487 Msa0039510:intron 35.0%
!! AAAGTACCTTTTTCCCACAA+AGG + chr1_1:69214477-69214496 None:intergenic 35.0%
ACATTAACGTGAAAGAAGCA+AGG - chr1_1:69214539-69214558 Msa0039510:intron 35.0%
CACACTATAATACTAGAGAG+AGG - chr1_1:69214573-69214592 Msa0039510:intron 35.0%
! GTTTTCTAAATGATGCCTCA+TGG - chr1_1:69214814-69214833 Msa0039510:intron 35.0%
TCTAGTCTATTTGCACTTGT+AGG + chr1_1:69215126-69215145 None:intergenic 35.0%
!! TTGATGAATTTTGGAAGGCA+AGG - chr1_1:69215390-69215409 Msa0039510:intron 35.0%
! CAGTTTTCTTTCTCACAATG+TGG + chr1_1:69215469-69215488 None:intergenic 35.0%
! AGTGGTGTCAATAACTCATT+GGG + chr1_1:69215641-69215660 None:intergenic 35.0%
! TAGTGGTGTCAATAACTCAT+TGG + chr1_1:69215642-69215661 None:intergenic 35.0%
CACCACTAATATGTGCAATT+TGG - chr1_1:69215654-69215673 Msa0039510:intron 35.0%
TGCCAAATTGCACATATTAG+TGG + chr1_1:69215659-69215678 None:intergenic 35.0%
!!! ATGTATGTGCTGTTTTAGGT+TGG - chr1_1:69215768-69215787 Msa0039510:intron 35.0%
!!! TGCTGTTTTAGGTTGGATTA+TGG - chr1_1:69215775-69215794 Msa0039510:intron 35.0%
GTCTATAGTACAAAATTCGG+TGG - chr1_1:69215960-69215979 Msa0039510:intron 35.0%
AAGTTTAGCCACAAACACAT+AGG + chr1_1:69216236-69216255 None:intergenic 35.0%
! ATTCTTCGATGATGCGTTTT+TGG + chr1_1:69216366-69216385 None:intergenic 35.0%
GAAGAAGCAGAAAATGTTTG+TGG + chr1_1:69216593-69216612 None:intergenic 35.0%
TCACTTCTTGTAGGTGTAAA+GGG + chr1_1:69216647-69216666 None:intergenic 35.0%
CAGTGTTTGCCATGTAATTA+GGG + chr1_1:69216706-69216725 None:intergenic 35.0%
TCAGTGTTTGCCATGTAATT+AGG + chr1_1:69216707-69216726 None:intergenic 35.0%
CAGACAATGATTCTGATTCA+AGG - chr1_1:69216840-69216859 Msa0039510:CDS 35.0%
CTATTAAAACGACTCAAAGC+AGG + chr1_1:69216881-69216900 None:intergenic 35.0%
! ATTTTGCTTAGCAATGTGCA+TGG - chr1_1:69217184-69217203 Msa0039510:five_prime_UTR 35.0%
CGAGTCATCACCATTTCTAT+TGG + chr1_1:69211309-69211328 None:intergenic 40.0%
AAACCCATGGTTCAACTCAT+TGG + chr1_1:69211589-69211608 None:intergenic 40.0%
! AGATTTTGTACCCGATCCAT+CGG + chr1_1:69211653-69211672 None:intergenic 40.0%
AAGACAACAACAAGAGACGA+TGG - chr1_1:69211677-69211696 Msa0039510:CDS 40.0%
GGAATCAAATTGGTTGAAGG+CGG + chr1_1:69211764-69211783 None:intergenic 40.0%
GGAGGAATCAAATTGGTTGA+AGG + chr1_1:69211767-69211786 None:intergenic 40.0%
! GCATGTTTGTTGCGTTCTAA+GGG + chr1_1:69211793-69211812 None:intergenic 40.0%
! TGCATGTTTGTTGCGTTCTA+AGG + chr1_1:69211794-69211813 None:intergenic 40.0%
AAAATACAGTCAGCTTTCCG+TGG - chr1_1:69211970-69211989 Msa0039510:CDS 40.0%
TTTGACTCACCAAGTAACCA+CGG + chr1_1:69211990-69212009 None:intergenic 40.0%
ATGAGATGTACTGTGTGGAA+GGG + chr1_1:69212279-69212298 None:intergenic 40.0%
AAATGTTAACTAGTGCTCCC+GGG + chr1_1:69212827-69212846 None:intergenic 40.0%
GAAATGTTAACTAGTGCTCC+CGG + chr1_1:69212828-69212847 None:intergenic 40.0%
TGTGCAAGATACGTTAGAGT+AGG + chr1_1:69213513-69213532 None:intergenic 40.0%
TCTAACGTATCTTGCACACT+TGG - chr1_1:69213515-69213534 Msa0039510:intron 40.0%
CTAACGTATCTTGCACACTT+GGG - chr1_1:69213516-69213535 Msa0039510:intron 40.0%
TAACGTATCTTGCACACTTG+GGG - chr1_1:69213517-69213536 Msa0039510:intron 40.0%
TAGTATAGTGTTGCAGCTGT+TGG - chr1_1:69213627-69213646 Msa0039510:intron 40.0%
AGTATAGTGTTGCAGCTGTT+GGG - chr1_1:69213628-69213647 Msa0039510:intron 40.0%
!! AATATGGTGCTGCAACAACA+GGG + chr1_1:69213712-69213731 None:intergenic 40.0%
! ATTTTCTCCACCTTAGCCAT+GGG + chr1_1:69213868-69213887 None:intergenic 40.0%
! TATTTTCTCCACCTTAGCCA+TGG + chr1_1:69213869-69213888 None:intergenic 40.0%
ACCCACATCTCAAACAAGTT+GGG + chr1_1:69213894-69213913 None:intergenic 40.0%
ACAAGAAAGCCCCACATATT+TGG - chr1_1:69214038-69214057 Msa0039510:intron 40.0%
!! GGAAATTTGGTAGTCTTGTG+AGG - chr1_1:69214171-69214190 Msa0039510:intron 40.0%
CATAACTCTTTGTCTAGAGG+TGG + chr1_1:69214202-69214221 None:intergenic 40.0%
CAAACTAAAATGGCCCTTTG+TGG - chr1_1:69214242-69214261 Msa0039510:intron 40.0%
! ATCAACCACGTTTGAGGTAA+TGG - chr1_1:69214282-69214301 Msa0039510:intron 40.0%
AACCCTACCTACTAGTACTT+GGG + chr1_1:69214309-69214328 None:intergenic 40.0%
TAGGAGATTGAAGAGCAAGT+TGG - chr1_1:69214359-69214378 Msa0039510:intron 40.0%
!!! TTTGTTTTTGGCTGCGTATG+GGG - chr1_1:69214393-69214412 Msa0039510:intron 40.0%
! GATTTTCAGCCTGTTATGCA+AGG - chr1_1:69214650-69214669 Msa0039510:intron 40.0%
GGGTGTACTAAAGTTCAACA+TGG + chr1_1:69214964-69214983 None:intergenic 40.0%
!! GTTGAGAGCACTTAAAGCTT+TGG - chr1_1:69215418-69215437 Msa0039510:intron 40.0%
AGAAAACTGCAGATATGCTC+AGG - chr1_1:69215480-69215499 Msa0039510:intron 40.0%
! GTGGTGTCAATAACTCATTG+GGG + chr1_1:69215640-69215659 None:intergenic 40.0%
GTGGTTGCTCATATTCTTCA+GGG + chr1_1:69215935-69215954 None:intergenic 40.0%
TGTGGTTGCTCATATTCTTC+AGG + chr1_1:69215936-69215955 None:intergenic 40.0%
ATAGTACTGTACCTTGAGGA+TGG + chr1_1:69215991-69216010 None:intergenic 40.0%
GAGAATAGTACTGTACCTTG+AGG + chr1_1:69215995-69216014 None:intergenic 40.0%
CGACTTAACCTATGTGTTTG+TGG - chr1_1:69216225-69216244 Msa0039510:intron 40.0%
CATCCAATGGTCTAACCAAT+TGG + chr1_1:69216321-69216340 None:intergenic 40.0%
GGATTCTCGAAGTAGATACT+TGG - chr1_1:69216414-69216433 Msa0039510:intron 40.0%
GCTTCTTCAAGAAATGGAAG+TGG - chr1_1:69216605-69216624 Msa0039510:CDS 40.0%
CTCACTTCTTGTAGGTGTAA+AGG + chr1_1:69216648-69216667 None:intergenic 40.0%
CATGAACACTCACTTCTTGT+AGG + chr1_1:69216656-69216675 None:intergenic 40.0%
CTACAAGAAGTGAGTGTTCA+TGG - chr1_1:69216654-69216673 Msa0039510:CDS 40.0%
GAGTGTTCATGGAGTTTCTT+AGG - chr1_1:69216665-69216684 Msa0039510:CDS 40.0%
TGTTCATGGAGTTTCTTAGG+TGG - chr1_1:69216668-69216687 Msa0039510:CDS 40.0%
AGTTTCTTAGGTGGATACTC+TGG - chr1_1:69216677-69216696 Msa0039510:CDS 40.0%
CTCTGGTTACCCTAATTACA+TGG - chr1_1:69216694-69216713 Msa0039510:CDS 40.0%
TGGCAAACACTGAATCTTCT+AGG - chr1_1:69216714-69216733 Msa0039510:CDS 40.0%
GGCAAACACTGAATCTTCTA+GGG - chr1_1:69216715-69216734 Msa0039510:CDS 40.0%
!!! ACCAAGACAAAGGCATTTTG+AGG - chr1_1:69216760-69216779 Msa0039510:CDS 40.0%
TCCTCAAAATGCCTTTGTCT+TGG + chr1_1:69216764-69216783 None:intergenic 40.0%
! TCTACTAGAAGGCCTTTTCA+AGG - chr1_1:69216791-69216810 Msa0039510:CDS 40.0%
!! AAGGCCTTTTCAAGGTCTTT+GGG - chr1_1:69216799-69216818 Msa0039510:CDS 40.0%
ACTTCCCAAAGACCTTGAAA+AGG + chr1_1:69216806-69216825 None:intergenic 40.0%
!! TTTTCAAGGTCTTTGGGAAG+TGG - chr1_1:69216805-69216824 Msa0039510:CDS 40.0%
! TTTCAAGGTCTTTGGGAAGT+GGG - chr1_1:69216806-69216825 Msa0039510:CDS 40.0%
TCGGAGACTAGAATTGGTCA+TGG + chr1_1:69211418-69211437 None:intergenic 45.0%
!! AGAGTGTCGGAGACTAGAAT+TGG + chr1_1:69211424-69211443 None:intergenic 45.0%
! GTTGAACCATGGGTTTTCTC+CGG - chr1_1:69211593-69211612 Msa0039510:three_prime_UTR 45.0%
ACTCTTTGGCGCCAAAAAAC+CGG - chr1_1:69211618-69211637 Msa0039510:three_prime_UTR 45.0%
AACAAGAGACGATGGAGCTT+CGG - chr1_1:69211685-69211704 Msa0039510:CDS 45.0%
TCAAATTGGTTGAAGGCGGA+GGG + chr1_1:69211760-69211779 None:intergenic 45.0%
ATCAAATTGGTTGAAGGCGG+AGG + chr1_1:69211761-69211780 None:intergenic 45.0%
AGGGAGTGGAGGAATCAAAT+TGG + chr1_1:69211774-69211793 None:intergenic 45.0%
!! TTTGTTGCGTTCTAAGGGAG+TGG + chr1_1:69211788-69211807 None:intergenic 45.0%
GATGAGATGTACTGTGTGGA+AGG + chr1_1:69212280-69212299 None:intergenic 45.0%
AATCACCTTAACTAGTGCCC+CGG - chr1_1:69212806-69212825 Msa0039510:intron 45.0%
AATGTTAACTAGTGCTCCCG+GGG + chr1_1:69212826-69212845 None:intergenic 45.0%
CCAAAAACTTAGGAGAGGGA+GGG + chr1_1:69213218-69213237 None:intergenic 45.0%
TCCAAAAACTTAGGAGAGGG+AGG + chr1_1:69213219-69213238 None:intergenic 45.0%
!! CAATATGGTGCTGCAACAAC+AGG + chr1_1:69213713-69213732 None:intergenic 45.0%
! ATGGGTGACTAGCTGCAATA+TGG + chr1_1:69213728-69213747 None:intergenic 45.0%
AATAGAGACTCCCATGGCTA+AGG - chr1_1:69213855-69213874 Msa0039510:intron 45.0%
! TGCCCAACTTGTTTGAGATG+TGG - chr1_1:69213889-69213908 Msa0039510:intron 45.0%
! GCCCAACTTGTTTGAGATGT+GGG - chr1_1:69213890-69213909 Msa0039510:intron 45.0%
CACCCACATCTCAAACAAGT+TGG + chr1_1:69213895-69213914 None:intergenic 45.0%
! CTTGTTTGAGATGTGGGTGA+AGG - chr1_1:69213896-69213915 Msa0039510:intron 45.0%
!! AAACGTGGTTGATGATGGGT+TGG + chr1_1:69214275-69214294 None:intergenic 45.0%
!! CCTCAAACGTGGTTGATGAT+GGG + chr1_1:69214279-69214298 None:intergenic 45.0%
!! ACCTCAAACGTGGTTGATGA+TGG + chr1_1:69214280-69214299 None:intergenic 45.0%
TAATGGCCCCAAGTACTAGT+AGG - chr1_1:69214299-69214318 Msa0039510:intron 45.0%
ACCCTACCTACTAGTACTTG+GGG + chr1_1:69214308-69214327 None:intergenic 45.0%
CAACCCTACCTACTAGTACT+TGG + chr1_1:69214310-69214329 None:intergenic 45.0%
AATACTAGAGAGAGGGAGAG+AGG - chr1_1:69214581-69214600 Msa0039510:intron 45.0%
TTTGGTGAAGTTGCAAGCAC+TGG - chr1_1:69215436-69215455 Msa0039510:intron 45.0%
!! TGAAGTTGCAAGCACTGGTT+CGG - chr1_1:69215441-69215460 Msa0039510:intron 45.0%
ATTGGTGCGACTACAGACAA+AGG - chr1_1:69215514-69215533 Msa0039510:intron 45.0%
AAGTCGTGTGCACTTGTCAT+CGG - chr1_1:69215544-69215563 Msa0039510:intron 45.0%
GCTCCAATTGGTTAGACCAT+TGG - chr1_1:69216315-69216334 Msa0039510:intron 45.0%
!!! TGCGTTTTTGGTCTGGCTAA+CGG + chr1_1:69216354-69216373 None:intergenic 45.0%
!!! TCGATGATGCGTTTTTGGTC+TGG + chr1_1:69216361-69216380 None:intergenic 45.0%
!! CACTGAATCTTCTAGGGCTA+AGG - chr1_1:69216721-69216740 Msa0039510:CDS 45.0%
CACAAAGTGCACCAAGACAA+AGG - chr1_1:69216750-69216769 Msa0039510:CDS 45.0%
!! GAAGGCCTTTTCAAGGTCTT+TGG - chr1_1:69216798-69216817 Msa0039510:CDS 45.0%
! TTCAAGGTCTTTGGGAAGTG+GGG - chr1_1:69216807-69216826 Msa0039510:CDS 45.0%
! TCTAGCTCCTTCATACCCAA+CGG - chr1_1:69217240-69217259 Msa0039510:five_prime_UTR 45.0%
TCCTTCATACCCAACGGATA+AGG - chr1_1:69217246-69217265 Msa0039510:five_prime_UTR 45.0%
ACCTTATCCGTTGGGTATGA+AGG + chr1_1:69217250-69217269 None:intergenic 45.0%
!!! TATTTTTAAAAATAAGAAAA+CGG - chr1_1:69213009-69213028 Msa0039510:CDS 5.0%
AACCCCACGCGCAAATACAA+GGG + chr1_1:69211368-69211387 None:intergenic 50.0%
CTCTTTGGCGCCAAAAAACC+GGG - chr1_1:69211619-69211638 Msa0039510:three_prime_UTR 50.0%
!!! GGAGGATGAACCCGGTTTTT+TGG + chr1_1:69211632-69211651 None:intergenic 50.0%
! TTTTGTACCCGATCCATCGG+AGG + chr1_1:69211650-69211669 None:intergenic 50.0%
GGAAGTAGTAACAAAGCGCG+TGG - chr1_1:69211913-69211932 Msa0039510:CDS 50.0%
ACAAAGCGCGTGGTCAGTTA+CGG - chr1_1:69211923-69211942 Msa0039510:CDS 50.0%
TTAACGGTAGCGATCTCCTC+CGG + chr1_1:69211952-69211971 None:intergenic 50.0%
GTCAGCTTTCCGTGGTTACT+TGG - chr1_1:69211978-69211997 Msa0039510:CDS 50.0%
AGTGAAAGCGAACTGTTCCG+TGG - chr1_1:69212234-69212253 Msa0039510:CDS 50.0%
CAACACAACACCGATGTCCA+CGG + chr1_1:69212254-69212273 None:intergenic 50.0%
ATCACCTTAACTAGTGCCCC+GGG - chr1_1:69212807-69212826 Msa0039510:intron 50.0%
! CCCTCCCTCTCCTAAGTTTT+TGG - chr1_1:69213215-69213234 Msa0039510:intron 50.0%
AGTGGCAATAGAGACTCCCA+TGG - chr1_1:69213849-69213868 Msa0039510:intron 50.0%
GGTTGGCAAAGGTCCACAAA+GGG + chr1_1:69214258-69214277 None:intergenic 50.0%
!! GGTTGATGATGGGTTGGCAA+AGG + chr1_1:69214269-69214288 None:intergenic 50.0%
CCCATCATCAACCACGTTTG+AGG - chr1_1:69214276-69214295 Msa0039510:intron 50.0%
GCCCCAAGTACTAGTAGGTA+GGG - chr1_1:69214304-69214323 Msa0039510:intron 50.0%
TCAGCCTGTTATGCAAGGCA+AGG - chr1_1:69214655-69214674 Msa0039510:intron 50.0%
CAGCCTGTTATGCAAGGCAA+GGG - chr1_1:69214656-69214675 Msa0039510:intron 50.0%
CTTCCCTTGCCTTGCATAAC+AGG + chr1_1:69214662-69214681 None:intergenic 50.0%
CTGTTATGCAAGGCAAGGGA+AGG - chr1_1:69214660-69214679 Msa0039510:intron 50.0%
TTATGCAAGGCAAGGGAAGG+TGG - chr1_1:69214663-69214682 Msa0039510:intron 50.0%
!! GAAGTTGCAAGCACTGGTTC+GGG - chr1_1:69215442-69215461 Msa0039510:intron 50.0%
!! AAGTTGCAAGCACTGGTTCG+GGG - chr1_1:69215443-69215462 Msa0039510:intron 50.0%
GCTCAGGCGTATGCAAACAT+TGG - chr1_1:69215496-69215515 Msa0039510:intron 50.0%
GAGTCAGAGAAACCACGGTT+TGG - chr1_1:69216293-69216312 Msa0039510:intron 50.0%
! AACCACGGTTTGGCTCCAAT+TGG - chr1_1:69216303-69216322 Msa0039510:intron 50.0%
AACCAATTGGAGCCAAACCG+TGG + chr1_1:69216308-69216327 None:intergenic 50.0%
CGGAGTTCTCTTGCATCCAA+TGG + chr1_1:69216334-69216353 None:intergenic 50.0%
AAGGCCCTTGTATTTGCGCG+TGG - chr1_1:69211361-69211380 Msa0039510:three_prime_UTR 55.0%
AGGCCCTTGTATTTGCGCGT+GGG - chr1_1:69211362-69211381 Msa0039510:three_prime_UTR 55.0%
CAACCCCACGCGCAAATACA+AGG + chr1_1:69211369-69211388 None:intergenic 55.0%
TGCGCGTGGGGTTGAAACTT+TGG - chr1_1:69211375-69211394 Msa0039510:three_prime_UTR 55.0%
! GGTTTTCTCCGGCGACTCTT+TGG - chr1_1:69211604-69211623 Msa0039510:three_prime_UTR 55.0%
! TTTTGGCGCCAAAGAGTCGC+CGG + chr1_1:69211615-69211634 None:intergenic 55.0%
AAACCGGGTTCATCCTCCGA+TGG - chr1_1:69211634-69211653 Msa0039510:exon 55.0%
GATCCATCGGAGGATGAACC+CGG + chr1_1:69211640-69211659 None:intergenic 55.0%
GGGTTCATCCTCCGATGGAT+CGG - chr1_1:69211639-69211658 Msa0039510:exon 55.0%
GGTTCATCCTCCGATGGATC+GGG - chr1_1:69211640-69211659 Msa0039510:CDS 55.0%
AATTGGTTGAAGGCGGAGGG+TGG + chr1_1:69211757-69211776 None:intergenic 55.0%
!! GTTGCGTTCTAAGGGAGTGG+AGG + chr1_1:69211785-69211804 None:intergenic 55.0%
ACATGCAATCGCCGTTGCTG+CGG - chr1_1:69211807-69211826 Msa0039510:CDS 55.0%
GTGGTCAGACTCACAAGCAG+TGG - chr1_1:69211883-69211902 Msa0039510:CDS 55.0%
GCGAACTGTTCCGTGGACAT+CGG - chr1_1:69212241-69212260 Msa0039510:CDS 55.0%
!! CGTGGACATCGGTGTTGTGT+TGG - chr1_1:69212252-69212271 Msa0039510:CDS 55.0%
AGAGACTCCCATGGCTAAGG+TGG - chr1_1:69213858-69213877 Msa0039510:intron 55.0%
! GGGTTGGCAAAGGTCCACAA+AGG + chr1_1:69214259-69214278 None:intergenic 55.0%
TGGGGCCATTACCTCAAACG+TGG + chr1_1:69214290-69214309 None:intergenic 55.0%
GGCCCCAAGTACTAGTAGGT+AGG - chr1_1:69214303-69214322 Msa0039510:intron 55.0%
CGGTGGATCTTCCATCCTCA+AGG - chr1_1:69215977-69215996 Msa0039510:intron 55.0%
GGCCCTTGTATTTGCGCGTG+GGG - chr1_1:69211363-69211382 Msa0039510:three_prime_UTR 60.0%
GAGTCGCCGGAGAAAACCCA+TGG + chr1_1:69211602-69211621 None:intergenic 60.0%
TGCTGCTGTTGCCGCAGCAA+CGG + chr1_1:69211821-69211840 None:intergenic 60.0%
AGCGTGTGCTGCAGCTAGAG+CGG + chr1_1:69211854-69211873 None:intergenic 60.0%
CAGACTCACAAGCAGTGGCG+TGG - chr1_1:69211888-69211907 Msa0039510:CDS 60.0%
ACTCACAAGCAGTGGCGTGG+CGG - chr1_1:69211891-69211910 Msa0039510:CDS 60.0%
GCGTGGTCAGTTACGGTTGC+CGG - chr1_1:69211930-69211949 Msa0039510:CDS 60.0%
TGGTCAGTTACGGTTGCCGG+AGG - chr1_1:69211933-69211952 Msa0039510:CDS 60.0%
! TGCTCCCGGGGCACTAGTTA+AGG + chr1_1:69212814-69212833 None:intergenic 60.0%
TGGTTGAAGGCGGAGGGTGG+CGG + chr1_1:69211754-69211773 None:intergenic 65.0%
TGCTGCAGCTAGAGCGGCCT+CGG + chr1_1:69211848-69211867 None:intergenic 65.0%
TGCAGCACACGCTGCTGCTG+AGG - chr1_1:69211861-69211880 Msa0039510:CDS 65.0%
AGCACACGCTGCTGCTGAGG+TGG - chr1_1:69211864-69211883 Msa0039510:CDS 65.0%
CTCACAAGCAGTGGCGTGGC+GGG - chr1_1:69211892-69211911 Msa0039510:CDS 65.0%
!! GGTGGCGGTTGTGGTGGTGG+TGG + chr1_1:69211739-69211758 None:intergenic 70.0%
! GAGGGTGGCGGTTGTGGTGG+TGG + chr1_1:69211742-69211761 None:intergenic 70.0%
! AAGGCGGAGGGTGGCGGTTG+TGG + chr1_1:69211748-69211767 None:intergenic 70.0%
GGCAACAGCAGCAGTCGCCG+AGG - chr1_1:69211828-69211847 Msa0039510:CDS 70.0%
! GCGGAGGGTGGCGGTTGTGG+TGG + chr1_1:69211745-69211764 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 69211291 69217274 69211291 ID=Msa0039510;Name=Msa0039510
chr1_1 mRNA 69211291 69217274 69211291 ID=Msa0039510-mRNA-1;Parent=Msa0039510;Name=Msa0039510-mRNA-1;_AED=0.18;_eAED=0.18;_QI=310|1|1|1|1|1|4|349|444
chr1_1 exon 69211291 69212305 69211291 ID=Msa0039510-mRNA-1:exon:22684;Parent=Msa0039510-mRNA-1
chr1_1 exon 69212567 69212635 69212567 ID=Msa0039510-mRNA-1:exon:22683;Parent=Msa0039510-mRNA-1
chr1_1 exon 69212958 69213158 69212958 ID=Msa0039510-mRNA-1:exon:22682;Parent=Msa0039510-mRNA-1
chr1_1 exon 69216566 69217274 69216566 ID=Msa0039510-mRNA-1:exon:22681;Parent=Msa0039510-mRNA-1
chr1_1 five_prime_UTR 69216965 69217274 69216965 ID=Msa0039510-mRNA-1:five_prime_utr;Parent=Msa0039510-mRNA-1
chr1_1 CDS 69216566 69216964 69216566 ID=Msa0039510-mRNA-1:cds;Parent=Msa0039510-mRNA-1
chr1_1 CDS 69212958 69213158 69212958 ID=Msa0039510-mRNA-1:cds;Parent=Msa0039510-mRNA-1
chr1_1 CDS 69212567 69212635 69212567 ID=Msa0039510-mRNA-1:cds;Parent=Msa0039510-mRNA-1
chr1_1 CDS 69211640 69212305 69211640 ID=Msa0039510-mRNA-1:cds;Parent=Msa0039510-mRNA-1
chr1_1 three_prime_UTR 69211291 69211639 69211291 ID=Msa0039510-mRNA-1:three_prime_utr;Parent=Msa0039510-mRNA-1
Gene Sequence

>Msa0039510

ATGGGTTTTCTCCGGCGACTCTTTGGCGCCAAAAAACCGGGTTCATCCTCCGATGGATCGGGTACAAAATCTGATAAAGACAACAACAAGAGACGATGGAGCTTCGGAAAACAAAGCAGTAAAAGAAAGTCACTTCCACCACCACCACAACCGCCACCCTCCGCCTTCAACCAATTTGATTCCTCCACTCCCTTAGAACGCAACAAACATGCAATCGCCGTTGCTGCGGCAACAGCAGCAGTCGCCGAGGCCGCTCTAGCTGCAGCACACGCTGCTGCTGAGGTGGTCAGACTCACAAGCAGTGGCGTGGCGGGAAGTAGTAACAAAGCGCGTGGTCAGTTACGGTTGCCGGAGGAGATCGCTACCGTTAAAATACAGTCAGCTTTCCGTGGTTACTTGGCAAGGCGAGCGTTGAGAGCACTTAAAGCTTTGGTGAAGTTGCAAGCACTGGTTCGGGGCCACATTGTGAGAAAGAAAACTGCAGATATGCTCAGGCGTATGCAAACATTGGTGCGACTACAGACAAAGGCACGTGCAAGTCGTGTGCACTTGTCATCGGATAATCTGCATTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCCCTGAAGAATATGAGCAACCACATCATGTCTATAGTACAAAATTCGGTGGATCTTCCATCCTCAAGAGATGCAGTTCCAATTCAAATTTTAGGAAGATTGAGTCAGAGAAACCACGGTTTGGCTCCAATTGGTTAGACCATTGGATGCAAGAGAACTCCGTTAGCCAGACCAAAAACGCATCATCGAAGAATAGACACACTGATGAACATAAAATTGATAGGATTCTCGAAGTAGATACTTGGAAGCCACAGTTGAATAAAAATGAGAATAATGTGAGTTCTATGTCAAATGAGTCTCCATCAAAACATTCAACAAAAGCTCAAAATCGAAGTCTCTCATTGAAGTTTCACAAAGCAAAAGAAGAAGTAGCAGCATCGCGCACTGCTGATAATAGTCCACAAACATTTTCTGCTTCTTCAAGAAATGGAAGTGGTGTAAGAAGAAATACTCCCTTTACACCTACAAGAAGTGAGTGTTCATGGAGTTTCTTAGGTGGATACTCTGGTTACCCTAATTACATGGCAAACACTGAATCTTCTAGGGCTAAGGTTAGATCACAAAGTGCACCAAGACAAAGGCATTTTGAGGAATATAGTTCTACTAGAAGGCCTTTTCAAGGTCTTTGGGAAGTGGGGTCTACTAATTCAGACAATGATTCTGATTCAAGGAGCAACAAAGTCTCACCTGCTTTGAGTCGTTTTAATAGAATTGGAAGTAGCAATTTAAGGTGA
Protein sequence

>Msa0039510

MGFLRRLFGAKKPGSSSDGSGTKSDKDNNKRRWSFGKQSSKRKSLPPPPQPPPSAFNQFDSSTPLERNKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSGVAGSSNKARGQLRLPEEIATVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKKTADMLRRMQTLVRLQTKARASRVHLSSDNLHSFKSSLSHYPVPEEYEQPHHVYSTKFGGSSILKRCSSNSNFRKIESEKPRFGSNWLDHWMQENSVSQTKNASSKNRHTDEHKIDRILEVDTWKPQLNKNENNVSSMSNESPSKHSTKAQNRSLSLKFHKAKEEVAASRTADNSPQTFSASSRNGSGVRRNTPFTPTRSECSWSFLGGYSGYPNYMANTESSRAKVRSQSAPRQRHFEEYSSTRRPFQGLWEVGSTNSDNDSDSRSNKVSPALSRFNRIGSSNLR*