AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1423130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423130 MtrunA17_Chr1g0203711 95.023 442 17 4 1 438 1 441 0.0 784
Msa1423130 MtrunA17_Chr6g0472551 63.326 469 128 15 1 438 1 456 1.10e-154 446
Msa1423130 MtrunA17_Chr4g0057321 38.095 420 192 14 3 398 7 382 1.37e-50 176
Msa1423130 MtrunA17_Chr1g0204901 36.102 313 143 9 91 398 121 381 6.65e-31 123
Msa1423130 MtrunA17_Chr8g0340761 35.561 419 183 14 3 388 7 371 3.05e-30 121
Msa1423130 MtrunA17_Chr1g0166431 32.061 393 196 14 19 398 32 366 4.40e-29 118
Msa1423130 MtrunA17_Chr8g0346021 31.034 377 162 13 88 388 112 466 5.03e-23 101
Msa1423130 MtrunA17_Chr7g0273951 33.091 275 125 9 115 388 108 324 1.56e-21 95.9
Msa1423130 MtrunA17_Chr4g0020671 32.353 170 99 3 25 192 25 180 1.03e-19 90.9
Msa1423130 MtrunA17_Chr1g0200161 33.333 165 77 4 112 244 140 303 5.24e-19 89.4
Msa1423130 MtrunA17_Chr8g0389781 58.537 123 40 2 54 173 72 186 1.39e-18 87.8
Msa1423130 MtrunA17_Chr4g0025441 73.585 53 14 0 112 164 95 147 1.84e-16 81.3
Msa1423130 MtrunA17_Chr8g0371131 62.903 62 23 0 112 173 70 131 1.97e-16 75.9
Msa1423130 MtrunA17_Chr2g0330921 57.971 69 29 0 100 168 84 152 2.65e-15 77.0
Msa1423130 MtrunA17_Chr6g0462191 53.279 122 50 1 61 182 62 176 5.56e-15 76.6
Msa1423130 MtrunA17_Chr4g0060381 53.125 64 30 0 113 176 100 163 7.75e-15 76.6
Msa1423130 MtrunA17_Chr4g0045641 44.776 67 37 0 112 178 145 211 8.21e-15 76.6
Msa1423130 MtrunA17_Chr1g0172611 47.101 138 67 3 25 161 21 153 2.93e-14 73.9
Msa1423130 MtrunA17_Chr3g0126901 62.162 111 29 4 56 164 64 163 4.01e-14 73.9
Msa1423130 MtrunA17_Chr1g0146931 63.889 72 26 0 112 183 121 192 4.46e-14 73.9
Msa1423130 MtrunA17_Chr1g0181581 28.571 308 172 11 112 383 115 410 5.36e-14 73.6
Msa1423130 MtrunA17_Chr7g0273861 37.179 156 70 4 35 171 37 183 7.05e-14 73.2
Msa1423130 MtrunA17_Chr7g0263731 27.778 378 218 12 45 383 50 411 2.74e-13 71.6
Msa1423130 MtrunA17_Chr3g0135851 62.264 53 20 0 112 164 90 142 4.97e-13 70.5
Msa1423130 MtrunA17_Chr1g0156121 34.286 140 85 4 111 244 122 260 8.14e-13 70.5
Msa1423130 MtrunA17_Chr5g0416161 45.000 80 42 1 108 187 116 193 5.20e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423130 AT5G62070.1 46.279 430 133 17 1 404 1 358 1.73e-59 200
Msa1423130 AT5G07240.1 43.088 434 164 12 1 420 1 365 4.64e-56 191
Msa1423130 AT5G07240.2 43.088 434 164 12 1 420 47 411 1.56e-55 191
Msa1423130 AT4G23060.1 34.861 502 225 16 3 433 7 477 1.31e-34 135
Msa1423130 AT3G16490.1 38.529 340 143 13 54 388 52 330 4.30e-30 120
Msa1423130 AT1G01110.2 34.421 337 152 12 112 388 120 447 1.36e-27 115
Msa1423130 AT4G00820.1 32.857 350 135 15 112 388 131 453 2.18e-26 112
Msa1423130 AT1G51960.1 55.682 88 35 1 92 179 83 166 2.24e-19 89.4
Msa1423130 AT5G03040.1 25.737 373 196 10 60 383 66 406 3.93e-19 89.7
Msa1423130 AT5G03040.3 25.737 373 196 10 60 383 66 406 3.93e-19 89.7
Msa1423130 AT5G03040.2 25.737 373 196 10 60 383 66 406 3.93e-19 89.7
Msa1423130 AT4G14750.1 61.194 67 26 0 112 178 104 170 5.02e-19 89.0
Msa1423130 AT4G14750.2 61.194 67 26 0 112 178 163 229 1.12e-18 88.2
Msa1423130 AT4G14750.3 61.194 67 26 0 112 178 163 229 1.22e-18 88.2
Msa1423130 AT3G52290.1 57.143 70 30 0 112 181 107 176 2.11e-18 87.4
Msa1423130 AT3G49380.1 41.549 142 58 4 30 171 52 168 1.16e-17 84.3
Msa1423130 AT3G49260.1 56.944 72 31 0 112 183 119 190 5.67e-17 83.2
Msa1423130 AT3G49260.4 56.944 72 31 0 112 183 119 190 5.67e-17 83.2
Msa1423130 AT3G49260.2 56.944 72 31 0 112 183 119 190 5.67e-17 83.2
Msa1423130 AT3G49260.3 56.944 72 31 0 112 183 119 190 5.85e-17 83.2
Msa1423130 AT1G18840.1 33.333 141 88 3 109 243 105 245 2.82e-16 81.6
Msa1423130 AT1G18840.3 33.333 141 88 3 109 243 105 245 2.82e-16 81.6
Msa1423130 AT1G18840.2 33.333 141 88 3 109 243 105 245 2.82e-16 81.6
Msa1423130 AT3G59690.2 52.381 63 30 0 116 178 172 234 3.98e-16 80.9
Msa1423130 AT3G59690.1 52.381 63 30 0 116 178 172 234 3.98e-16 80.9
Msa1423130 AT3G51380.1 61.290 62 24 0 112 173 36 97 3.92e-15 71.6
Msa1423130 AT2G26180.1 69.811 53 16 0 112 164 83 135 5.32e-15 77.0
Msa1423130 AT1G74690.1 45.570 79 43 0 109 187 109 187 6.89e-15 77.4
Msa1423130 AT4G29150.1 56.522 69 30 0 100 168 118 186 9.73e-15 76.3
Msa1423130 AT3G22190.3 69.811 53 16 0 112 164 87 139 9.84e-15 76.3
Msa1423130 AT3G22190.2 69.811 53 16 0 112 164 87 139 9.84e-15 76.3
Msa1423130 AT3G22190.4 69.811 53 16 0 112 164 87 139 9.84e-15 76.3
Msa1423130 AT3G22190.1 69.811 53 16 0 112 164 87 139 9.84e-15 76.3
Msa1423130 AT1G72670.1 55.072 69 31 0 113 181 93 161 1.49e-14 75.5
Msa1423130 AT1G17480.1 54.545 66 30 0 108 173 89 154 1.87e-14 75.1
Msa1423130 AT2G26410.2 47.887 71 37 0 112 182 147 217 1.08e-13 73.6
Msa1423130 AT2G26410.1 47.887 71 37 0 112 182 147 217 1.08e-13 73.6
Msa1423130 AT4G10640.1 64.815 54 19 0 115 168 102 155 2.02e-13 72.0
Msa1423130 AT2G43680.1 43.284 67 38 0 112 178 322 388 2.64e-13 72.4
Msa1423130 AT2G43680.4 43.284 67 38 0 112 178 321 387 2.66e-13 72.4
Msa1423130 AT2G43680.2 43.284 67 38 0 112 178 321 387 2.66e-13 72.4
Msa1423130 AT2G43680.3 43.284 67 38 0 112 178 321 387 2.66e-13 72.4
Msa1423130 AT2G43680.5 43.284 67 38 0 112 178 321 387 2.66e-13 72.4
Msa1423130 AT1G19870.2 30.392 204 128 7 109 309 29 221 4.70e-13 71.6
Msa1423130 AT1G19870.1 30.392 204 128 7 109 309 212 404 5.25e-13 71.6
Msa1423130 AT5G03960.1 62.745 51 19 0 109 159 103 153 5.92e-12 67.4
Msa1423130 AT5G03960.3 62.745 51 19 0 109 159 104 154 6.00e-12 67.4
Msa1423130 AT5G03960.2 62.745 51 19 0 109 159 104 154 6.00e-12 67.4
Msa1423130 AT1G14380.1 32.432 148 74 6 113 245 94 230 2.79e-11 66.2
Msa1423130 AT1G14380.3 32.432 148 74 6 113 245 94 230 2.79e-11 66.2
Msa1423130 AT1G14380.4 32.432 148 74 6 113 245 94 230 2.79e-11 66.2
Msa1423130 AT1G14380.6 32.432 148 74 6 113 245 94 230 2.85e-11 65.9
Msa1423130 AT1G14380.5 32.432 148 74 6 113 245 94 230 2.85e-11 65.9
Msa1423130 AT1G14380.2 32.432 148 74 6 113 245 94 230 2.85e-11 65.9
Msa1423130 AT1G14380.7 32.432 148 74 6 113 245 94 230 2.96e-11 65.9
Msa1423130 AT3G09710.1 26.486 185 99 3 112 259 107 291 3.57e-11 65.5

Find 113 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCATAGTTGTCAAGATTT+TGG 0.144492 tig0025513:-21511 Msa1423130:five_prime_UTR
TCAGTGTTTGCCATGTAATT+AGG 0.191553 tig0025513:+16352 None:intergenic
GGATTGGAAGTAGCAATTTA+AGG 0.254208 tig0025513:-16156 Msa1423130:CDS
TTCCAAAATCTTGACAACTA+TGG 0.254874 tig0025513:+21509 None:intergenic
TGGCAAACACTGAATCTTCT+AGG 0.269467 tig0025513:-16342 Msa1423130:CDS
TGCATGTTTGTTGCGTTCTA+AGG 0.274169 tig0025513:+21066 None:intergenic
GAGTGTTCATGGAGTTTCTT+AGG 0.278838 tig0025513:-16391 Msa1423130:CDS
CGAGTCATCACCATTTCTAT+TGG 0.282357 tig0025513:+21539 None:intergenic
GAAGTTGCAAGCACTGGTTC+GGG 0.327277 tig0025513:-17615 Msa1423130:CDS
AATCTTCCTAAAATTTGAAT+TGG 0.331141 tig0025513:+16786 None:intergenic
CAGTGTTTGCCATGTAATTA+GGG 0.331564 tig0025513:+16353 None:intergenic
TGTGGTTGCTCATATTCTTC+AGG 0.331662 tig0025513:+17123 None:intergenic
TGAAGTTGCAAGCACTGGTT+CGG 0.362471 tig0025513:-17616 Msa1423130:CDS
CTACAAGAAGTGAGTGTTCA+TGG 0.367097 tig0025513:-16402 Msa1423130:CDS
AAACCCATGGTTCAACTCAT+TGG 0.368169 tig0025513:+21256 None:intergenic
AGGAATATAGTTCTACTAGA+AGG 0.389996 tig0025513:-16276 Msa1423130:CDS
ATGCCGCTGCTGAGGTGGTC+AGG 0.392389 tig0025513:-20988 Msa1423130:CDS
CATGAACACTCACTTCTTGT+AGG 0.394316 tig0025513:+16403 None:intergenic
TCACTTCTTGTAGGTGTAAA+GGG 0.394452 tig0025513:+16412 None:intergenic
CTGATGAACATAAAATTGAT+AGG 0.400812 tig0025513:-16663 Msa1423130:CDS
ATGATTTGTAAATCATGAAT+TGG 0.402034 tig0025513:-15903 Msa1423130:three_prime_UTR
GTTGAGAGCACTTAAAGCTT+TGG 0.405805 tig0025513:-17639 Msa1423130:CDS
AGCGCGTGGATTACGGTTGC+CGG 0.406392 tig0025513:-20930 Msa1423130:CDS
GTAACAAAGCGCGTGGATTA+CGG 0.414216 tig0025513:-20937 Msa1423130:CDS
CATGTCTATAGTACAAAATT+CGG 0.414346 tig0025513:-17099 Msa1423130:CDS
CATCCAATGGTCTAACCAAT+TGG 0.414937 tig0025513:+16738 None:intergenic
GAAGAAGCAGAAAATGTTTG+TGG 0.415494 tig0025513:+16466 None:intergenic
TGCGCGTGGGGTTGAAACTT+TGG 0.427504 tig0025513:-21470 Msa1423130:five_prime_UTR
TTAACGGCGGCGATCTCCTC+CGG 0.427865 tig0025513:+20911 None:intergenic
TGGTTGAAGGCGGAGGGTGG+TGG 0.430256 tig0025513:+21106 None:intergenic
AGGGAGTGGAGGAATCAAAT+TGG 0.431194 tig0025513:+21086 None:intergenic
CTCACAAGCAGTGGCGTGGC+GGG 0.431799 tig0025513:-20965 Msa1423130:CDS
CAGACAATGATTCTGATTCA+AGG 0.437973 tig0025513:-16216 Msa1423130:CDS
TCCTCAAAATGCCTTTGTCT+TGG 0.443738 tig0025513:+16295 None:intergenic
CTCACTTCTTGTAGGTGTAA+AGG 0.446179 tig0025513:+16411 None:intergenic
GTGGTTGCTCATATTCTTCA+GGG 0.446728 tig0025513:+17124 None:intergenic
GCTCCAATTGGTTAGACCAT+TGG 0.447342 tig0025513:-16741 Msa1423130:CDS
TCAAAGTGTTCCAATAGAAA+TGG 0.451112 tig0025513:-21549 Msa1423130:five_prime_UTR
AACAAGAGACGATGGAGCTT+CGG 0.454907 tig0025513:-21157 Msa1423130:CDS
TGCAGCACATGCCGCTGCTG+AGG 0.458833 tig0025513:-20996 Msa1423130:CDS
TTTCAAGGTCTTTGGGAAGT+GGG 0.462047 tig0025513:-16250 Msa1423130:CDS
CTCTGGTTACCCTAATTACA+TGG 0.469823 tig0025513:-16362 Msa1423130:CDS
TTTGTTGCGTTCTAAGGGAG+TGG 0.472253 tig0025513:+21072 None:intergenic
ATCAAATTGGTTGAAGGCGG+AGG 0.474549 tig0025513:+21099 None:intergenic
CAACCCCACGCGCAAATACA+AGG 0.474672 tig0025513:+21479 None:intergenic
AGAGTGTCGGAGACTAGAAT+TGG 0.480995 tig0025513:+21424 None:intergenic
CACTGAATCTTCTAGGGCTA+AGG 0.485595 tig0025513:-16335 Msa1423130:CDS
TTTGGTGAAGTTGCAAGCAC+TGG 0.485657 tig0025513:-17621 Msa1423130:CDS
AGCACATGCCGCTGCTGAGG+TGG 0.486201 tig0025513:-20993 Msa1423130:CDS
AACCACGGTTTGGCTCCAAT+TGG 0.486425 tig0025513:-16753 Msa1423130:CDS
GAAGAAGAAGTGGGAACACT+TGG 0.494828 tig0025513:+21375 None:intergenic
TGCTGCTGTTGCCGCAGCAA+CGG 0.494936 tig0025513:+21039 None:intergenic
CTCCTTCGTACCAACAGATA+AGG 0.500355 tig0025513:-15812 Msa1423130:three_prime_UTR
TTGGTTAGACCATTGGATGC+AGG 0.505179 tig0025513:-16734 Msa1423130:CDS
TTTGGGGTAACCTTATCTGT+TGG 0.506472 tig0025513:+15802 None:intergenic
GAGTCAGAGAAACCACGGTT+TGG 0.506667 tig0025513:-16763 Msa1423130:CDS
GGTTCATCCTCCGATGGATC+GGG 0.520293 tig0025513:-21202 Msa1423130:CDS
GCATGTTTGTTGCGTTCTAA+GGG 0.520488 tig0025513:+21067 None:intergenic
GGATTCTCGAAGTAGATACT+TGG 0.520535 tig0025513:-16642 Msa1423130:CDS
GGGTTCATCCTCCGATGGAT+CGG 0.522185 tig0025513:-21203 Msa1423130:CDS
ACTTCCCAAAGACCTTGAAA+AGG 0.525606 tig0025513:+16253 None:intergenic
ATCTGTTGGTACGAAGGAGC+TGG 0.528030 tig0025513:+15816 None:intergenic
GGAGGAATCAAATTGGTTGA+AGG 0.530076 tig0025513:+21093 None:intergenic
AGTTTCTTAGGTGGATACTC+TGG 0.536101 tig0025513:-16379 Msa1423130:CDS
GATCCATCGGAGGATGAACC+CGG 0.542081 tig0025513:+21205 None:intergenic
GTCTATAGTACAAAATTCGG+TGG 0.545289 tig0025513:-17096 Msa1423130:CDS
AGAAAACTGCAGATATGCTC+AGG 0.549370 tig0025513:-17577 Msa1423130:CDS
AGAATACACTACAAAAGTAC+AGG 0.551084 tig0025513:+15980 None:intergenic
GCTTCTTCAAGAAATGGAAG+TGG 0.558785 tig0025513:-16451 Msa1423130:CDS
CGGAGTTCTCCTGCATCCAA+TGG 0.563151 tig0025513:+16725 None:intergenic
ACATGCAATCGCCGTTGCTG+CGG 0.564729 tig0025513:-21050 Msa1423130:CDS
ATGCCCTTGTATTTGCGCGT+GGG 0.565226 tig0025513:-21483 Msa1423130:five_prime_UTR
AAAAGTGGTTGAAGAAGAAG+TGG 0.565354 tig0025513:+21365 None:intergenic
GGCATGTGCTGCAGCTAGAG+CGG 0.567126 tig0025513:+21006 None:intergenic
TGCCCTTGTATTTGCGCGTG+GGG 0.567879 tig0025513:-21482 Msa1423130:five_prime_UTR
CAGGCTCACAAGCAGTGGCG+TGG 0.571299 tig0025513:-20969 Msa1423130:CDS
GGCAAACACTGAATCTTCTA+GGG 0.574429 tig0025513:-16341 Msa1423130:CDS
AAGTCTTGTGCACTTGTCAT+CGG 0.576363 tig0025513:-17513 Msa1423130:CDS
AATGCCCTTGTATTTGCGCG+TGG 0.576676 tig0025513:-21484 Msa1423130:five_prime_UTR
ATAGTACTGTACCTTGAGGA+TGG 0.576723 tig0025513:+17068 None:intergenic
AGTATACTTGTATAGAGTGT+CGG 0.583945 tig0025513:+21411 None:intergenic
TCAAATTGGTTGAAGGCGGA+GGG 0.587160 tig0025513:+21100 None:intergenic
CTATTAAAACGACTCAAAGC+AGG 0.587404 tig0025513:+16178 None:intergenic
CGGTGGGTCTTCCATCCTCA+AGG 0.590714 tig0025513:-17079 Msa1423130:intron
AATTGGTTGAAGGCGGAGGG+TGG 0.590989 tig0025513:+21103 None:intergenic
AAACCAATGAGTTGAACCAT+GGG 0.591599 tig0025513:-21259 Msa1423130:exon
AAAACCAATGAGTTGAACCA+TGG 0.594095 tig0025513:-21260 Msa1423130:exon
AGTGAGAATGAATTTAGTTG+AGG 0.595609 tig0025513:+21325 None:intergenic
AACCTTATCTGTTGGTACGA+AGG 0.597323 tig0025513:+15810 None:intergenic
GCTCACAAGCAGTGGCGTGG+CGG 0.599426 tig0025513:-20966 Msa1423130:CDS
AAACCGGGTTCATCCTCCGA+TGG 0.604772 tig0025513:-21208 Msa1423130:CDS
TCGGAGACTAGAATTGGTCA+TGG 0.604931 tig0025513:+21430 None:intergenic
CACAAAGTGCACCAAGACAA+AGG 0.608130 tig0025513:-16306 Msa1423130:CDS
TGTTCATGGAGTTTCTTAGG+TGG 0.609267 tig0025513:-16388 Msa1423130:CDS
GTTGCGTTCTAAGGGAGTGG+AGG 0.612069 tig0025513:+21075 None:intergenic
TCTATAGTACAAAATTCGGT+GGG 0.613341 tig0025513:-17095 Msa1423130:CDS
GCTCAGGCGTATGCAAACAT+TGG 0.619659 tig0025513:-17561 Msa1423130:CDS
GTGGTCAGGCTCACAAGCAG+TGG 0.622037 tig0025513:-20974 Msa1423130:CDS
GAGCCTGACCACCTCAGCAG+CGG 0.622959 tig0025513:+20985 None:intergenic
TTTGTACTATAGACATGATG+TGG 0.627968 tig0025513:+17105 None:intergenic
AAGACAACAACAAGAGACGA+TGG 0.630191 tig0025513:-21165 Msa1423130:CDS
GGCAACAGCAGCAGTCGCTG+AGG 0.632789 tig0025513:-21029 Msa1423130:CDS
GGAAGTAGTAACAAAGCGCG+TGG 0.633674 tig0025513:-20944 Msa1423130:CDS
GGAATCAAATTGGTTGAAGG+CGG 0.641470 tig0025513:+21096 None:intergenic
AACCCCACGCGCAAATACAA+GGG 0.647665 tig0025513:+21480 None:intergenic
GCGTGGATTACGGTTGCCGG+AGG 0.651028 tig0025513:-20927 Msa1423130:CDS
GAGTCGCCGGAGAAAACCCA+TGG 0.652244 tig0025513:+21243 None:intergenic
AACCAATTGGAGCCAAACCG+TGG 0.656827 tig0025513:+16751 None:intergenic
AAAGTGGTTGAAGAAGAAGT+GGG 0.663309 tig0025513:+21366 None:intergenic
ATTGGTGCGACTACAGACAA+AGG 0.678626 tig0025513:-17543 Msa1423130:CDS
AGATTGAGTCAGAGAAACCA+CGG 0.681117 tig0025513:-16768 Msa1423130:CDS
AAGTTGCAAGCACTGGTTCG+GGG 0.686816 tig0025513:-17614 Msa1423130:CDS
ATTGTGAATTGTGACTCACA+TGG 0.718227 tig0025513:-15845 Msa1423130:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTCTATAAATTATTC+AGG - tig0025513:16606-16625 Msa1423130:CDS 10.0%
!! AATAAAAAAAAAATAGCAAT+AGG + tig0025513:16837-16856 None:intergenic 10.0%
!! TTAAACTTAATATTGTTAAT+TGG + tig0025513:16982-17001 None:intergenic 10.0%
!!! ATTAAAATATGTGTAATTTT+AGG - tig0025513:17075-17094 Msa1423130:intron 10.0%
!!! TTAAAATATGTGTAATTTTA+GGG - tig0025513:17076-17095 Msa1423130:intron 10.0%
!! AAATAAAAAGAAAAATTCTT+GGG + tig0025513:17505-17524 None:intergenic 10.0%
!! ATAAAATTAATCTTGAATAT+GGG + tig0025513:18059-18078 None:intergenic 10.0%
!!! TTTTATATTTTAGTCATAAA+AGG - tig0025513:18461-18480 Msa1423130:intron 10.0%
!! AACATTTAAATTGAATTATT+AGG - tig0025513:20104-20123 Msa1423130:intron 10.0%
!!! TAAAATATGTGTAATTTTAG+GGG - tig0025513:17077-17096 Msa1423130:intron 15.0%
!! AATTATCATTGAAATGAATA+AGG + tig0025513:17264-17283 None:intergenic 15.0%
!! GAAATAAAAAGAAAAATTCT+TGG + tig0025513:17506-17525 None:intergenic 15.0%
!! AAGTTTGATTATAATATGTT+TGG + tig0025513:17587-17606 None:intergenic 15.0%
!! CAATTTAGTAAAAAAATTCA+GGG - tig0025513:17703-17722 Msa1423130:intron 15.0%
!!! ATATAAAAATGCAACATTTT+CGG + tig0025513:17881-17900 None:intergenic 15.0%
!! CATAAAATTAATCTTGAATA+TGG + tig0025513:18060-18079 None:intergenic 15.0%
!!! CATTTTAATAAAAGAGTTAA+TGG - tig0025513:18113-18132 Msa1423130:intron 15.0%
!!! ATTATTTGCTAATTCATTTA+TGG + tig0025513:18431-18450 None:intergenic 15.0%
!! ATAAAGAAGAAATAAAACAA+GGG + tig0025513:19092-19111 None:intergenic 15.0%
!! ACAAAACAAAAATGAATAAA+AGG + tig0025513:19199-19218 None:intergenic 15.0%
!!! TATTCATTTTTGTTTTGTTT+TGG - tig0025513:19201-19220 Msa1423130:intron 15.0%
!! AGATAAAATAGTTTAAAGAA+AGG + tig0025513:19342-19361 None:intergenic 15.0%
!! AAATTTATCTACTTAATTGT+AGG - tig0025513:20212-20231 Msa1423130:intron 15.0%
!!! CATAATTTGAAGTAATTAAT+TGG + tig0025513:20323-20342 None:intergenic 15.0%
!!! CATTTGCTTTTTTTTTTTTT+GGG - tig0025513:21311-21330 Msa1423130:five_prime_UTR 15.0%
!!! TTTTTTCTTTGACTTTTTGA+AGG + tig0025513:16084-16103 None:intergenic 20.0%
!! AATAGGATAGAGTTTAATTA+TGG + tig0025513:16820-16839 None:intergenic 20.0%
!!! TTTTTTATCAAGTAGTTTAG+TGG + tig0025513:17292-17311 None:intergenic 20.0%
!! TTTGATTATAATATGTTTGG+TGG + tig0025513:17584-17603 None:intergenic 20.0%
!!! TGCTTTTTTATTACTTTCTT+TGG - tig0025513:17662-17681 Msa1423130:intron 20.0%
!!! TTTTATTACTTTCTTTGGAT+CGG - tig0025513:17667-17686 Msa1423130:intron 20.0%
!! GCAATTTAGTAAAAAAATTC+AGG - tig0025513:17702-17721 Msa1423130:intron 20.0%
!!! AGATTGTTACTTTGTATAAT+GGG - tig0025513:17903-17922 Msa1423130:intron 20.0%
!! AATAAAAGAGTTAATGGAAT+AGG - tig0025513:18119-18138 Msa1423130:intron 20.0%
!! TTTAGTCATAAAAGGAAATT+TGG - tig0025513:18469-18488 Msa1423130:intron 20.0%
!!! ATGTTTTTTACCTTTTGAAT+TGG + tig0025513:18754-18773 None:intergenic 20.0%
!! CATAAAGAAGAAATAAAACA+AGG + tig0025513:19093-19112 None:intergenic 20.0%
!! TTTATCATTAAAAAACCGAT+TGG - tig0025513:19150-19169 Msa1423130:intron 20.0%
!!! TTTTGTTTTGGATTAGTATA+TGG - tig0025513:19213-19232 Msa1423130:intron 20.0%
!! AAGTAATGTTACATAAAACT+TGG + tig0025513:19305-19324 None:intergenic 20.0%
!! GTTTAAAGAAAGGATAAAAA+TGG + tig0025513:19332-19351 None:intergenic 20.0%
!! TCTTACTCTTTGATTAAAAA+TGG + tig0025513:19375-19394 None:intergenic 20.0%
!!! TTTTTAATCAAAGAGTAAGA+AGG - tig0025513:19375-19394 Msa1423130:intron 20.0%
!!! CAACATATTTTGATGAATTT+TGG - tig0025513:19684-19703 Msa1423130:intron 20.0%
!!! ATATTTTGATGAATTTTGGA+AGG - tig0025513:19688-19707 Msa1423130:intron 20.0%
!!! ACATAATTTTGCAAAATCAT+AGG - tig0025513:20014-20033 Msa1423130:intron 20.0%
!!! AAAAGAAATTGTTTTTTGAC+TGG - tig0025513:20143-20162 Msa1423130:intron 20.0%
!! AGATAAATTTACAACACAAA+AGG + tig0025513:20202-20221 None:intergenic 20.0%
!! TCTATTTGAAGAATAAACAA+TGG - tig0025513:20396-20415 Msa1423130:intron 20.0%
!! AATCTTCCTAAAATTTGAAT+TGG + tig0025513:20577-20596 None:intergenic 20.0%
!! CCAAAAAAAAAAAAAGCAAA+TGG + tig0025513:21313-21332 None:intergenic 20.0%
!!! CCATTTGCTTTTTTTTTTTT+TGG - tig0025513:21310-21329 Msa1423130:five_prime_UTR 20.0%
!!! TTTTTTTTTTTTTGGGTGTT+CGG - tig0025513:21318-21337 Msa1423130:five_prime_UTR 20.0%
!!! ATGATTTGTAAATCATGAAT+TGG - tig0025513:21457-21476 Msa1423130:five_prime_UTR 20.0%
!!! AAAAGCTGACTGTATTTTAA+CGG + tig0025513:16468-16487 None:intergenic 25.0%
! TAGAAAAATTCGATTTCAAC+TGG + tig0025513:16596-16615 None:intergenic 25.0%
! AATTATGTCAACCAACAAAA+AGG - tig0025513:16645-16664 Msa1423130:CDS 25.0%
!!! AAAGTATTTGACCTTTTTGT+TGG + tig0025513:16659-16678 None:intergenic 25.0%
! TTTGCTTATAAAGATGAGAA+TGG + tig0025513:16897-16916 None:intergenic 25.0%
! TGGATAATGCGTAATATATA+TGG - tig0025513:17223-17242 Msa1423130:intron 25.0%
! GGATAATGCGTAATATATAT+GGG - tig0025513:17224-17243 Msa1423130:intron 25.0%
! CAAAATAATCTCCATATAGA+TGG - tig0025513:17346-17365 Msa1423130:intron 25.0%
! AAATGACACATAAAGCAAAT+TGG + tig0025513:17464-17483 None:intergenic 25.0%
! AAGAAAAGTTCCAAAAACTT+AGG + tig0025513:17538-17557 None:intergenic 25.0%
!! ATAATGCACTCTTAATTTTC+AGG + tig0025513:17756-17775 None:intergenic 25.0%
!! ATTTTCGGATGAAAATTACA+GGG + tig0025513:17866-17885 None:intergenic 25.0%
!!! GAGATTGTTACTTTGTATAA+TGG - tig0025513:17902-17921 Msa1423130:intron 25.0%
! ACACTATACTATAATTGTAG+AGG + tig0025513:17931-17950 None:intergenic 25.0%
! ATGTAATGTCACAATGTAAT+AGG - tig0025513:18641-18660 Msa1423130:intron 25.0%
! AAATAAAACAAGGGAATAGA+AGG + tig0025513:19083-19102 None:intergenic 25.0%
! AACAATCAAATTGAACCAAT+CGG + tig0025513:19168-19187 None:intergenic 25.0%
! TTCAATTTGATTGTTACTCT+TGG - tig0025513:19173-19192 Msa1423130:intron 25.0%
! TTGGAAGACTTATTCAATTT+GGG + tig0025513:19286-19305 None:intergenic 25.0%
!!! CTTATTTTCATAAGTTCTTC+AGG + tig0025513:19561-19580 None:intergenic 25.0%
!! ACTGGCTTAAAAATAATGAT+TGG - tig0025513:20161-20180 Msa1423130:intron 25.0%
! CATGTCTATAGTACAAAATT+CGG - tig0025513:20261-20280 Msa1423130:intron 25.0%
! AGTAATTCTTATCACTTTGA+TGG - tig0025513:20367-20386 Msa1423130:intron 25.0%
! CTGATGAACATAAAATTGAT+AGG - tig0025513:20697-20716 Msa1423130:intron 25.0%
!!! TTCTCATTTTTATTCAACTG+TGG + tig0025513:20747-20766 None:intergenic 25.0%
!! TTTCTATTTTGTGGAAAAAG+TGG + tig0025513:21276-21295 None:intergenic 25.0%
!!! TGTCTCTTTTTTCTATTTTG+TGG + tig0025513:21285-21304 None:intergenic 25.0%
! TCAAAGTGTTCCAATAGAAA+TGG - tig0025513:15811-15830 Msa1423130:three_prime_UTR 30.0%
! ATCCATAGTTGTCAAGATTT+TGG - tig0025513:15849-15868 Msa1423130:three_prime_UTR 30.0%
TTCCAAAATCTTGACAACTA+TGG + tig0025513:15854-15873 None:intergenic 30.0%
AGTATACTTGTATAGAGTGT+CGG + tig0025513:15952-15971 None:intergenic 30.0%
! AAGAAGTGTGAATGAAAAAG+TGG + tig0025513:16013-16032 None:intergenic 30.0%
AGTGAGAATGAATTTAGTTG+AGG + tig0025513:16038-16057 None:intergenic 30.0%
!! TTCTTTGACTTTTTGAAGGA+AGG + tig0025513:16080-16099 None:intergenic 30.0%
AAGAAAATTGAGAATGAGCA+TGG + tig0025513:16570-16589 None:intergenic 30.0%
ATTATTCAGGAAACATGCAT+TGG - tig0025513:16619-16638 Msa1423130:CDS 30.0%
GGATAGAGTTTAATTATGGA+AGG + tig0025513:16816-16835 None:intergenic 30.0%
AAAGATGAGAATGGAGTATA+TGG + tig0025513:16888-16907 None:intergenic 30.0%
!! AATATGTGTAATTTTAGGGG+AGG - tig0025513:17080-17099 Msa1423130:CDS 30.0%
!! ATATGTGTAATTTTAGGGGA+GGG - tig0025513:17081-17100 Msa1423130:CDS 30.0%
ATTACTGCAAATAGGAATGA+AGG + tig0025513:17382-17401 None:intergenic 30.0%
TCCTATTTGCAGTAATATTG+TGG - tig0025513:17386-17405 Msa1423130:intron 30.0%
TCCACAATATTACTGCAAAT+AGG + tig0025513:17390-17409 None:intergenic 30.0%
AAAATTCTTGGGTTTGAATG+TGG + tig0025513:17494-17513 None:intergenic 30.0%
! CATTTTCGGATGAAAATTAC+AGG + tig0025513:17867-17886 None:intergenic 30.0%
TAAAGAGAGAAACAACTCTA+TGG - tig0025513:17975-17994 Msa1423130:intron 30.0%
TGAAGGAAAAAAATTTCAGG+TGG - tig0025513:18226-18245 Msa1423130:intron 30.0%
! GAAGGAAAAAAATTTCAGGT+GGG - tig0025513:18227-18246 Msa1423130:intron 30.0%
TATCATAACTCTTTGTCTAG+AGG + tig0025513:18516-18535 None:intergenic 30.0%
ATGATAGTTACCTTTGTATG+AGG - tig0025513:18530-18549 Msa1423130:intron 30.0%
!!! TTTTAGTTTGCCTCATACAA+AGG + tig0025513:18543-18562 None:intergenic 30.0%
TTGTATGAGGCAAACTAAAA+TGG - tig0025513:18543-18562 Msa1423130:intron 30.0%
!!! GTAACCACTTATTTTGCTTT+TGG - tig0025513:18682-18701 Msa1423130:intron 30.0%
AGGTAAAAAACATTCCTTTG+TGG - tig0025513:18761-18780 Msa1423130:intron 30.0%
GGTAAAAAACATTCCTTTGT+GGG - tig0025513:18762-18781 Msa1423130:intron 30.0%
!!! AAAGTACTTTTTTCCCACAA+AGG + tig0025513:18778-18797 None:intergenic 30.0%
ACACTATAATACTAGAGAGA+GGG - tig0025513:18875-18894 Msa1423130:intron 30.0%
AATTTGAGAAATGACAAGCA+AGG + tig0025513:19007-19026 None:intergenic 30.0%
AAAGAACAATTAGTACCATG+AGG + tig0025513:19133-19152 None:intergenic 30.0%
TGGAAGACTTATTCAATTTG+GGG + tig0025513:19285-19304 None:intergenic 30.0%
CTTGGAAGACTTATTCAATT+TGG + tig0025513:19287-19306 None:intergenic 30.0%
!! AAAAGGATTTGCTACTTACA+GGG + tig0025513:19910-19929 None:intergenic 30.0%
!! AAAAAGGATTTGCTACTTAC+AGG + tig0025513:19911-19930 None:intergenic 30.0%
!!! TGTTATGTATGTGCTGTTTT+AGG - tig0025513:20068-20087 Msa1423130:intron 30.0%
AATTTACAACACAAAAGGAG+AGG + tig0025513:20197-20216 None:intergenic 30.0%
TTTGTACTATAGACATGATG+TGG + tig0025513:20258-20277 None:intergenic 30.0%
TCTATAGTACAAAATTCGGT+GGG - tig0025513:20265-20284 Msa1423130:intron 30.0%
CAATAAGTTATGCATGCAAT+AGG + tig0025513:20465-20484 None:intergenic 30.0%
! GCAGTTCCAATTCAAATTTT+AGG - tig0025513:20568-20587 Msa1423130:intron 30.0%
! TTTTCTGCTTCTTCAAGAAA+TGG - tig0025513:20903-20922 Msa1423130:CDS 30.0%
! AGGAATATAGTTCTACTAGA+AGG - tig0025513:21084-21103 Msa1423130:CDS 30.0%
!! TTGAGTCGTTTTAATAGGAT+TGG - tig0025513:21188-21207 Msa1423130:CDS 30.0%
! AGAATACACTACAAAAGTAC+AGG + tig0025513:21383-21402 None:intergenic 30.0%
! ATTTTGCTTAGTAATGTGCA+TGG - tig0025513:21487-21506 Msa1423130:five_prime_UTR 30.0%
AAAGTGGTTGAAGAAGAAGT+GGG + tig0025513:15997-16016 None:intergenic 35.0%
AAAAGTGGTTGAAGAAGAAG+TGG + tig0025513:15998-16017 None:intergenic 35.0%
!! TTGACTTTTTGAAGGAAGGA+AGG + tig0025513:16076-16095 None:intergenic 35.0%
! AAAACCAATGAGTTGAACCA+TGG - tig0025513:16100-16119 Msa1423130:three_prime_UTR 35.0%
! AAACCAATGAGTTGAACCAT+GGG - tig0025513:16101-16120 Msa1423130:three_prime_UTR 35.0%
! AAAATACAGTCAGCTTTTCG+TGG - tig0025513:16470-16489 Msa1423130:CDS 35.0%
! GGTCAAATACTTTTCAACAG+TGG - tig0025513:16666-16685 Msa1423130:CDS 35.0%
ATTTGATGAGATGTACTGTG+TGG + tig0025513:16785-16804 None:intergenic 35.0%
TGAGTTTAGGTCAGTTAGTA+TGG - tig0025513:17203-17222 Msa1423130:intron 35.0%
CGTAATATATATGGGAAACG+AGG - tig0025513:17232-17251 Msa1423130:intron 35.0%
GTAGCATCTATCCATCTATA+TGG + tig0025513:17360-17379 None:intergenic 35.0%
! TGTCTGTTTTCTCTGTTGTA+TGG - tig0025513:17413-17432 Msa1423130:intron 35.0%
AGTTCCAAAAACTTAGGAGA+GGG + tig0025513:17532-17551 None:intergenic 35.0%
AAGTTCCAAAAACTTAGGAG+AGG + tig0025513:17533-17552 None:intergenic 35.0%
TTCTTTGGATCGGAAACATT+AGG - tig0025513:17677-17696 Msa1423130:intron 35.0%
TCTTTGGATCGGAAACATTA+GGG - tig0025513:17678-17697 Msa1423130:intron 35.0%
!! AATATGGTGCTGCAACAATA+GGG + tig0025513:18025-18044 None:intergenic 35.0%
AGGAGTAGCAATAGATACAT+AGG - tig0025513:18139-18158 Msa1423130:intron 35.0%
TAGCAATAGATACATAGGAG+TGG - tig0025513:18144-18163 Msa1423130:intron 35.0%
GGGTGAAGGAAAAAAATTTC+AGG - tig0025513:18223-18242 Msa1423130:intron 35.0%
TCACATCTATCCAAATATGC+GGG + tig0025513:18362-18381 None:intergenic 35.0%
CTCACATCTATCCAAATATG+CGG + tig0025513:18363-18382 None:intergenic 35.0%
!! GAAATTTGGTAGTCTTGTGA+GGG - tig0025513:18483-18502 Msa1423130:intron 35.0%
TAGGAGATTGAAGAACAAGT+TGG - tig0025513:18660-18679 Msa1423130:intron 35.0%
CTTTGCTTTGCCAATTCAAA+AGG - tig0025513:18741-18760 Msa1423130:intron 35.0%
ACATTAACGTGAAAGAAGCA+AGG - tig0025513:18840-18859 Msa1423130:intron 35.0%
CACACTATAATACTAGAGAG+AGG - tig0025513:18874-18893 Msa1423130:intron 35.0%
!!! GATTTTCAGCTTGTTATGCA+AGG - tig0025513:18951-18970 Msa1423130:intron 35.0%
! GTTTTCTAAATGATGCCTCA+TGG - tig0025513:19115-19134 Msa1423130:intron 35.0%
TCTAGTCTATTTGCACTTGT+AGG + tig0025513:19429-19448 None:intergenic 35.0%
!! TTGATGAATTTTGGAAGGCA+AGG - tig0025513:19693-19712 Msa1423130:intron 35.0%
! CAGTTTTCTTTCTCACAATG+TGG + tig0025513:19772-19791 None:intergenic 35.0%
TTGGGGAGAGAGAAAAAAAA+AGG + tig0025513:19927-19946 None:intergenic 35.0%
! AGTGGTGTCAATAACTCATT+GGG + tig0025513:19945-19964 None:intergenic 35.0%
! TAGTGGTGTCAATAACTCAT+TGG + tig0025513:19946-19965 None:intergenic 35.0%
CACCACTAATATGTGCAATT+TGG - tig0025513:19958-19977 Msa1423130:intron 35.0%
TGCCAAATTGCACATATTAG+TGG + tig0025513:19963-19982 None:intergenic 35.0%
!!! ATGTATGTGCTGTTTTAGGT+TGG - tig0025513:20072-20091 Msa1423130:intron 35.0%
!!! TGCTGTTTTAGGTTGGATTA+TGG - tig0025513:20079-20098 Msa1423130:intron 35.0%
GTCTATAGTACAAAATTCGG+TGG - tig0025513:20264-20283 Msa1423130:intron 35.0%
AAGTTTAGCCACAAACACAT+AGG + tig0025513:20540-20559 None:intergenic 35.0%
! ATTCTTCGATGATGCGTTTT+TGG + tig0025513:20670-20689 None:intergenic 35.0%
GAAGAAGCAGAAAATGTTTG+TGG + tig0025513:20897-20916 None:intergenic 35.0%
TCACTTCTTGTAGGTGTAAA+GGG + tig0025513:20951-20970 None:intergenic 35.0%
CAGTGTTTGCCATGTAATTA+GGG + tig0025513:21010-21029 None:intergenic 35.0%
TCAGTGTTTGCCATGTAATT+AGG + tig0025513:21011-21030 None:intergenic 35.0%
CAGACAATGATTCTGATTCA+AGG - tig0025513:21144-21163 Msa1423130:CDS 35.0%
CTATTAAAACGACTCAAAGC+AGG + tig0025513:21185-21204 None:intergenic 35.0%
!! CTGCTTTGAGTCGTTTTAAT+AGG - tig0025513:21183-21202 Msa1423130:CDS 35.0%
GGATTGGAAGTAGCAATTTA+AGG - tig0025513:21204-21223 Msa1423130:CDS 35.0%
ATTGTGAATTGTGACTCACA+TGG - tig0025513:21515-21534 Msa1423130:five_prime_UTR 35.0%
CGAGTCATCACCATTTCTAT+TGG + tig0025513:15824-15843 None:intergenic 40.0%
AAACCCATGGTTCAACTCAT+TGG + tig0025513:16107-16126 None:intergenic 40.0%
! AGATTTTGTACCCGATCCAT+CGG + tig0025513:16171-16190 None:intergenic 40.0%
AAGACAACAACAAGAGACGA+TGG - tig0025513:16195-16214 Msa1423130:CDS 40.0%
GGAATCAAATTGGTTGAAGG+CGG + tig0025513:16267-16286 None:intergenic 40.0%
GGAGGAATCAAATTGGTTGA+AGG + tig0025513:16270-16289 None:intergenic 40.0%
! GCATGTTTGTTGCGTTCTAA+GGG + tig0025513:16296-16315 None:intergenic 40.0%
! TGCATGTTTGTTGCGTTCTA+AGG + tig0025513:16297-16316 None:intergenic 40.0%
!!! AGCTGACTGTATTTTAACGG+CGG + tig0025513:16465-16484 None:intergenic 40.0%
! GTCAGCTTTTCGTGGTTATT+TGG - tig0025513:16478-16497 Msa1423130:CDS 40.0%
ATGAGATGTACTGTGTGGAA+GGG + tig0025513:16780-16799 None:intergenic 40.0%
GTCTCATGACTCATGAGTTT+AGG - tig0025513:17190-17209 Msa1423130:intron 40.0%
CGTTAGAGAGTAGGATGTAT+GGG + tig0025513:17816-17835 None:intergenic 40.0%
ACGTTAGAGAGTAGGATGTA+TGG + tig0025513:17817-17836 None:intergenic 40.0%
TGCAAGATACGTTAGAGAGT+AGG + tig0025513:17825-17844 None:intergenic 40.0%
TCTAACGTATCTTGCACACT+TGG - tig0025513:17829-17848 Msa1423130:intron 40.0%
CTAACGTATCTTGCACACTT+GGG - tig0025513:17830-17849 Msa1423130:intron 40.0%
TAACGTATCTTGCACACTTG+GGG - tig0025513:17831-17850 Msa1423130:intron 40.0%
!! CAATATGGTGCTGCAACAAT+AGG + tig0025513:18026-18045 None:intergenic 40.0%
! ATTTTCTCCACCTTAGCCAT+GGG + tig0025513:18181-18200 None:intergenic 40.0%
! TATTTTCTCCACCTTAGCCA+TGG + tig0025513:18182-18201 None:intergenic 40.0%
ACCCACATCTCAAACAAGTT+GGG + tig0025513:18207-18226 None:intergenic 40.0%
CACATCTATCCAAATATGCG+GGG + tig0025513:18361-18380 None:intergenic 40.0%
CGCATATTTGGATAGATGTG+AGG - tig0025513:18361-18380 Msa1423130:intron 40.0%
!! GGAAATTTGGTAGTCTTGTG+AGG - tig0025513:18482-18501 Msa1423130:intron 40.0%
CATAACTCTTTGTCTAGAGG+TGG + tig0025513:18513-18532 None:intergenic 40.0%
! ATCAACCACGTTTGAGGTAA+TGG - tig0025513:18583-18602 Msa1423130:intron 40.0%
AACCCTACCTACTAGTACTT+GGG + tig0025513:18610-18629 None:intergenic 40.0%
GCAGCCAAAAGCAAAATAAG+TGG + tig0025513:18689-18708 None:intergenic 40.0%
!! ATTTTGCTTTTGGCTGCGTA+TGG - tig0025513:18692-18711 Msa1423130:intron 40.0%
!! TTTTGCTTTTGGCTGCGTAT+GGG - tig0025513:18693-18712 Msa1423130:intron 40.0%
GGGTGTACTAAAGTTCAACA+TGG + tig0025513:19265-19284 None:intergenic 40.0%
!! GTTGAGAGCACTTAAAGCTT+TGG - tig0025513:19721-19740 Msa1423130:intron 40.0%
AGAAAACTGCAGATATGCTC+AGG - tig0025513:19783-19802 Msa1423130:intron 40.0%
! AAGTCTTGTGCACTTGTCAT+CGG - tig0025513:19847-19866 Msa1423130:intron 40.0%
! GTGGTGTCAATAACTCATTG+GGG + tig0025513:19944-19963 None:intergenic 40.0%
GTGGTTGCTCATATTCTTCA+GGG + tig0025513:20239-20258 None:intergenic 40.0%
TGTGGTTGCTCATATTCTTC+AGG + tig0025513:20240-20259 None:intergenic 40.0%
ATAGTACTGTACCTTGAGGA+TGG + tig0025513:20295-20314 None:intergenic 40.0%
GAGAATAGTACTGTACCTTG+AGG + tig0025513:20299-20318 None:intergenic 40.0%
CGACTTAACCTATGTGTTTG+TGG - tig0025513:20529-20548 Msa1423130:intron 40.0%
AGATTGAGTCAGAGAAACCA+CGG - tig0025513:20592-20611 Msa1423130:intron 40.0%
CATCCAATGGTCTAACCAAT+TGG + tig0025513:20625-20644 None:intergenic 40.0%
GGATTCTCGAAGTAGATACT+TGG - tig0025513:20718-20737 Msa1423130:intron 40.0%
GCTTCTTCAAGAAATGGAAG+TGG - tig0025513:20909-20928 Msa1423130:CDS 40.0%
CTCACTTCTTGTAGGTGTAA+AGG + tig0025513:20952-20971 None:intergenic 40.0%
CATGAACACTCACTTCTTGT+AGG + tig0025513:20960-20979 None:intergenic 40.0%
CTACAAGAAGTGAGTGTTCA+TGG - tig0025513:20958-20977 Msa1423130:CDS 40.0%
GAGTGTTCATGGAGTTTCTT+AGG - tig0025513:20969-20988 Msa1423130:CDS 40.0%
TGTTCATGGAGTTTCTTAGG+TGG - tig0025513:20972-20991 Msa1423130:CDS 40.0%
AGTTTCTTAGGTGGATACTC+TGG - tig0025513:20981-21000 Msa1423130:CDS 40.0%
CTCTGGTTACCCTAATTACA+TGG - tig0025513:20998-21017 Msa1423130:CDS 40.0%
TGGCAAACACTGAATCTTCT+AGG - tig0025513:21018-21037 Msa1423130:CDS 40.0%
GGCAAACACTGAATCTTCTA+GGG - tig0025513:21019-21038 Msa1423130:CDS 40.0%
!!! ACCAAGACAAAGGCATTTTG+AGG - tig0025513:21064-21083 Msa1423130:CDS 40.0%
TCCTCAAAATGCCTTTGTCT+TGG + tig0025513:21068-21087 None:intergenic 40.0%
! TCTACTAGAAGGCCTTTTCA+AGG - tig0025513:21095-21114 Msa1423130:CDS 40.0%
!! AAGGCCTTTTCAAGGTCTTT+GGG - tig0025513:21103-21122 Msa1423130:CDS 40.0%
ACTTCCCAAAGACCTTGAAA+AGG + tig0025513:21110-21129 None:intergenic 40.0%
!! TTTTCAAGGTCTTTGGGAAG+TGG - tig0025513:21109-21128 Msa1423130:CDS 40.0%
! TTTCAAGGTCTTTGGGAAGT+GGG - tig0025513:21110-21129 Msa1423130:CDS 40.0%
AACCTTATCTGTTGGTACGA+AGG + tig0025513:21553-21572 None:intergenic 40.0%
TCGGAGACTAGAATTGGTCA+TGG + tig0025513:15933-15952 None:intergenic 45.0%
!! AGAGTGTCGGAGACTAGAAT+TGG + tig0025513:15939-15958 None:intergenic 45.0%
GAAGAAGAAGTGGGAACACT+TGG + tig0025513:15988-16007 None:intergenic 45.0%
! GTTGAACCATGGGTTTTCTC+CGG - tig0025513:16111-16130 Msa1423130:three_prime_UTR 45.0%
ACTCTTTGGCGCCAAAAAAC+CGG - tig0025513:16136-16155 Msa1423130:exon 45.0%
AACAAGAGACGATGGAGCTT+CGG - tig0025513:16203-16222 Msa1423130:CDS 45.0%
TCAAATTGGTTGAAGGCGGA+GGG + tig0025513:16263-16282 None:intergenic 45.0%
ATCAAATTGGTTGAAGGCGG+AGG + tig0025513:16264-16283 None:intergenic 45.0%
AGGGAGTGGAGGAATCAAAT+TGG + tig0025513:16277-16296 None:intergenic 45.0%
!! TTTGTTGCGTTCTAAGGGAG+TGG + tig0025513:16291-16310 None:intergenic 45.0%
! GTAACAAAGCGCGTGGATTA+CGG - tig0025513:16423-16442 Msa1423130:CDS 45.0%
GATGAGATGTACTGTGTGGA+AGG + tig0025513:16781-16800 None:intergenic 45.0%
CCAAAAACTTAGGAGAGGGA+GGG + tig0025513:17528-17547 None:intergenic 45.0%
TCCAAAAACTTAGGAGAGGG+AGG + tig0025513:17529-17548 None:intergenic 45.0%
! ATGGGTGACTAGCTGCAATA+TGG + tig0025513:18041-18060 None:intergenic 45.0%
AATAGAGACTCCCATGGCTA+AGG - tig0025513:18168-18187 Msa1423130:intron 45.0%
! TGCCCAACTTGTTTGAGATG+TGG - tig0025513:18202-18221 Msa1423130:intron 45.0%
! GCCCAACTTGTTTGAGATGT+GGG - tig0025513:18203-18222 Msa1423130:intron 45.0%
CACCCACATCTCAAACAAGT+TGG + tig0025513:18208-18227 None:intergenic 45.0%
! CTTGTTTGAGATGTGGGTGA+AGG - tig0025513:18209-18228 Msa1423130:intron 45.0%
ACAAGAAAGCCCCGCATATT+TGG - tig0025513:18349-18368 Msa1423130:intron 45.0%
!! GTTGATGATGGGTTGGCAAA+GGG + tig0025513:18569-18588 None:intergenic 45.0%
!! AAACGTGGTTGATGATGGGT+TGG + tig0025513:18576-18595 None:intergenic 45.0%
!! CCTCAAACGTGGTTGATGAT+GGG + tig0025513:18580-18599 None:intergenic 45.0%
!! ACCTCAAACGTGGTTGATGA+TGG + tig0025513:18581-18600 None:intergenic 45.0%
TAATGGCCCCAAGTACTAGT+AGG - tig0025513:18600-18619 Msa1423130:intron 45.0%
ACCCTACCTACTAGTACTTG+GGG + tig0025513:18609-18628 None:intergenic 45.0%
CAACCCTACCTACTAGTACT+TGG + tig0025513:18611-18630 None:intergenic 45.0%
!! TTTGCTTTTGGCTGCGTATG+GGG - tig0025513:18694-18713 Msa1423130:intron 45.0%
AATACTAGAGAGAGGGAGAG+AGG - tig0025513:18882-18901 Msa1423130:intron 45.0%
!! TCAGCTTGTTATGCAAGGCA+AGG - tig0025513:18956-18975 Msa1423130:intron 45.0%
!! CAGCTTGTTATGCAAGGCAA+GGG - tig0025513:18957-18976 Msa1423130:intron 45.0%
TTGTTATGCAAGGCAAGGGA+AGG - tig0025513:18961-18980 Msa1423130:intron 45.0%
TTTGGTGAAGTTGCAAGCAC+TGG - tig0025513:19739-19758 Msa1423130:intron 45.0%
!! TGAAGTTGCAAGCACTGGTT+CGG - tig0025513:19744-19763 Msa1423130:intron 45.0%
ATTGGTGCGACTACAGACAA+AGG - tig0025513:19817-19836 Msa1423130:intron 45.0%
GCTCCAATTGGTTAGACCAT+TGG - tig0025513:20619-20638 Msa1423130:intron 45.0%
TTGGTTAGACCATTGGATGC+AGG - tig0025513:20626-20645 Msa1423130:intron 45.0%
!!! TGCGTTTTTGGTCTGGCTAA+CGG + tig0025513:20658-20677 None:intergenic 45.0%
!!! TCGATGATGCGTTTTTGGTC+TGG + tig0025513:20665-20684 None:intergenic 45.0%
!! CACTGAATCTTCTAGGGCTA+AGG - tig0025513:21025-21044 Msa1423130:CDS 45.0%
CACAAAGTGCACCAAGACAA+AGG - tig0025513:21054-21073 Msa1423130:CDS 45.0%
!! GAAGGCCTTTTCAAGGTCTT+TGG - tig0025513:21102-21121 Msa1423130:CDS 45.0%
CTCCTTCGTACCAACAGATA+AGG - tig0025513:21548-21567 Msa1423130:five_prime_UTR 45.0%
!!! TATTTTTTAAAATAAGAAAA+CGG - tig0025513:17320-17339 Msa1423130:intron 5.0%
AATGCCCTTGTATTTGCGCG+TGG - tig0025513:15876-15895 Msa1423130:three_prime_UTR 50.0%
ATGCCCTTGTATTTGCGCGT+GGG - tig0025513:15877-15896 Msa1423130:three_prime_UTR 50.0%
AACCCCACGCGCAAATACAA+GGG + tig0025513:15883-15902 None:intergenic 50.0%
CTCTTTGGCGCCAAAAAACC+GGG - tig0025513:16137-16156 Msa1423130:exon 50.0%
!!! GGAGGATGAACCCGGTTTTT+TGG + tig0025513:16150-16169 None:intergenic 50.0%
! TTTTGTACCCGATCCATCGG+AGG + tig0025513:16168-16187 None:intergenic 50.0%
GGAAGTAGTAACAAAGCGCG+TGG - tig0025513:16416-16435 Msa1423130:CDS 50.0%
AGTGAAAGCGAACTGTTCCG+TGG - tig0025513:16735-16754 Msa1423130:CDS 50.0%
CAACACAACACCGATGTCCA+CGG + tig0025513:16755-16774 None:intergenic 50.0%
! CCCTCCCTCTCCTAAGTTTT+TGG - tig0025513:17525-17544 Msa1423130:CDS 50.0%
AGTGGCAATAGAGACTCCCA+TGG - tig0025513:18162-18181 Msa1423130:intron 50.0%
!! GGTTGATGATGGGTTGGCAA+AGG + tig0025513:18570-18589 None:intergenic 50.0%
CCCATCATCAACCACGTTTG+AGG - tig0025513:18577-18596 Msa1423130:intron 50.0%
GCCCCAAGTACTAGTAGGTA+GGG - tig0025513:18605-18624 Msa1423130:intron 50.0%
TTATGCAAGGCAAGGGAAGG+TGG - tig0025513:18964-18983 Msa1423130:intron 50.0%
!! GAAGTTGCAAGCACTGGTTC+GGG - tig0025513:19745-19764 Msa1423130:intron 50.0%
!! AAGTTGCAAGCACTGGTTCG+GGG - tig0025513:19746-19765 Msa1423130:intron 50.0%
GCTCAGGCGTATGCAAACAT+TGG - tig0025513:19799-19818 Msa1423130:intron 50.0%
GAGTCAGAGAAACCACGGTT+TGG - tig0025513:20597-20616 Msa1423130:intron 50.0%
! AACCACGGTTTGGCTCCAAT+TGG - tig0025513:20607-20626 Msa1423130:intron 50.0%
AACCAATTGGAGCCAAACCG+TGG + tig0025513:20612-20631 None:intergenic 50.0%
ATCTGTTGGTACGAAGGAGC+TGG + tig0025513:21547-21566 None:intergenic 50.0%
TGCCCTTGTATTTGCGCGTG+GGG - tig0025513:15878-15897 Msa1423130:three_prime_UTR 55.0%
CAACCCCACGCGCAAATACA+AGG + tig0025513:15884-15903 None:intergenic 55.0%
TGCGCGTGGGGTTGAAACTT+TGG - tig0025513:15890-15909 Msa1423130:three_prime_UTR 55.0%
! GGTTTTCTCCGGCGACTCTT+TGG - tig0025513:16122-16141 Msa1423130:three_prime_UTR 55.0%
! TTTTGGCGCCAAAGAGTCGC+CGG + tig0025513:16133-16152 None:intergenic 55.0%
AAACCGGGTTCATCCTCCGA+TGG - tig0025513:16152-16171 Msa1423130:exon 55.0%
GATCCATCGGAGGATGAACC+CGG + tig0025513:16158-16177 None:intergenic 55.0%
GGGTTCATCCTCCGATGGAT+CGG - tig0025513:16157-16176 Msa1423130:CDS 55.0%
GGTTCATCCTCCGATGGATC+GGG - tig0025513:16158-16177 Msa1423130:CDS 55.0%
AATTGGTTGAAGGCGGAGGG+TGG + tig0025513:16260-16279 None:intergenic 55.0%
!! GTTGCGTTCTAAGGGAGTGG+AGG + tig0025513:16288-16307 None:intergenic 55.0%
ACATGCAATCGCCGTTGCTG+CGG - tig0025513:16310-16329 Msa1423130:CDS 55.0%
GCGAACTGTTCCGTGGACAT+CGG - tig0025513:16742-16761 Msa1423130:CDS 55.0%
!! CGTGGACATCGGTGTTGTGT+TGG - tig0025513:16753-16772 Msa1423130:CDS 55.0%
AGAGACTCCCATGGCTAAGG+TGG - tig0025513:18171-18190 Msa1423130:intron 55.0%
TGGGGCCATTACCTCAAACG+TGG + tig0025513:18591-18610 None:intergenic 55.0%
GGCCCCAAGTACTAGTAGGT+AGG - tig0025513:18604-18623 Msa1423130:intron 55.0%
CGGAGTTCTCCTGCATCCAA+TGG + tig0025513:20638-20657 None:intergenic 55.0%
GAGTCGCCGGAGAAAACCCA+TGG + tig0025513:16120-16139 None:intergenic 60.0%
TGCTGCTGTTGCCGCAGCAA+CGG + tig0025513:16324-16343 None:intergenic 60.0%
GGCATGTGCTGCAGCTAGAG+CGG + tig0025513:16357-16376 None:intergenic 60.0%
GTGGTCAGGCTCACAAGCAG+TGG - tig0025513:16386-16405 Msa1423130:CDS 60.0%
! AGCGCGTGGATTACGGTTGC+CGG - tig0025513:16430-16449 Msa1423130:CDS 60.0%
TTAACGGCGGCGATCTCCTC+CGG + tig0025513:16452-16471 None:intergenic 60.0%
CGGTGGGTCTTCCATCCTCA+AGG - tig0025513:20281-20300 Msa1423130:intron 60.0%
TGGTTGAAGGCGGAGGGTGG+TGG + tig0025513:16257-16276 None:intergenic 65.0%
GGCAACAGCAGCAGTCGCTG+AGG - tig0025513:16331-16350 Msa1423130:CDS 65.0%
TGCAGCACATGCCGCTGCTG+AGG - tig0025513:16364-16383 Msa1423130:CDS 65.0%
AGCACATGCCGCTGCTGAGG+TGG - tig0025513:16367-16386 Msa1423130:CDS 65.0%
ATGCCGCTGCTGAGGTGGTC+AGG - tig0025513:16372-16391 Msa1423130:CDS 65.0%
GAGCCTGACCACCTCAGCAG+CGG + tig0025513:16378-16397 None:intergenic 65.0%
CAGGCTCACAAGCAGTGGCG+TGG - tig0025513:16391-16410 Msa1423130:CDS 65.0%
GCTCACAAGCAGTGGCGTGG+CGG - tig0025513:16394-16413 Msa1423130:CDS 65.0%
CTCACAAGCAGTGGCGTGGC+GGG - tig0025513:16395-16414 Msa1423130:CDS 65.0%
! GCGTGGATTACGGTTGCCGG+AGG - tig0025513:16433-16452 Msa1423130:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0025513 gene 15806 21576 15806 ID=Msa1423130;Name=Msa1423130
tig0025513 mRNA 15806 21576 15806 ID=Msa1423130-mRNA-1;Parent=Msa1423130;Name=Msa1423130-mRNA-1;_AED=0.18;_eAED=0.18;_QI=313|1|1|1|1|1|4|347|438
tig0025513 exon 15806 16818 15806 ID=Msa1423130-mRNA-1:exon:3078;Parent=Msa1423130-mRNA-1
tig0025513 exon 17080 17148 17080 ID=Msa1423130-mRNA-1:exon:3077;Parent=Msa1423130-mRNA-1
tig0025513 exon 17472 17672 17472 ID=Msa1423130-mRNA-1:exon:3076;Parent=Msa1423130-mRNA-1
tig0025513 exon 20883 21576 20883 ID=Msa1423130-mRNA-1:exon:3075;Parent=Msa1423130-mRNA-1
tig0025513 five_prime_UTR 21264 21576 21264 ID=Msa1423130-mRNA-1:five_prime_utr;Parent=Msa1423130-mRNA-1
tig0025513 CDS 20883 21263 20883 ID=Msa1423130-mRNA-1:cds;Parent=Msa1423130-mRNA-1
tig0025513 CDS 17472 17672 17472 ID=Msa1423130-mRNA-1:cds;Parent=Msa1423130-mRNA-1
tig0025513 CDS 17080 17148 17080 ID=Msa1423130-mRNA-1:cds;Parent=Msa1423130-mRNA-1
tig0025513 CDS 16153 16818 16153 ID=Msa1423130-mRNA-1:cds;Parent=Msa1423130-mRNA-1
tig0025513 three_prime_UTR 15806 16152 15806 ID=Msa1423130-mRNA-1:three_prime_utr;Parent=Msa1423130-mRNA-1
Gene Sequence

>Msa1423130

ATGGGTTTTCTCCGGCGACTCTTTGGCGCCAAAAAACCGGGTTCATCCTCCGATGGATCGGGTACAAAATCTGATAAAGACAACAACAAGAGACGATGGAGCTTCGGAAAACAAAGCAGTAAAAGAAAGTCACTTCCACCACCCTCCGCCTTCAACCAATTTGATTCCTCCACTCCCTTAGAACGCAACAAACATGCAATCGCCGTTGCTGCGGCAACAGCAGCAGTCGCTGAGGCCGCTCTAGCTGCAGCACATGCCGCTGCTGAGGTGGTCAGGCTCACAAGCAGTGGCGTGGCGGGAAGTAGTAACAAAGCGCGTGGATTACGGTTGCCGGAGGAGATCGCCGCCGTTAAAATACAGTCAGCTTTTCGTGGTTATTTGGCAAGGCGAGCGTTGAGAGCACTTAAAGCTTTGGTGAAGTTGCAAGCACTGGTTCGGGGCCACATTGTGAGAAAGAAAACTGCAGATATGCTCAGGCGTATGCAAACATTGGTGCGACTACAGACAAAGGCACGTGCAAGTCTTGTGCACTTGTCATCGGATAATCTGCATTCTTTCAAGTCTTCACTTTCTCATTACCCTGTCCCTGAAGAATATGAGCAACCACATCATGTCTATAGTACAAAATTCGGTGGGTCTTCCATCCTCAAGAGATGCAGTTCCAATTCAAATTTTAGGAAGATTGAGTCAGAGAAACCACGGTTTGGCTCCAATTGGTTAGACCATTGGATGCAGGAGAACTCCGTTAGCCAGACCAAAAACGCATCATCGAAGAATAGACACACTGATGAACATAAAATTGATAGGATTCTCGAAGTAGATACTTGGAAGCCACAGTTGAATAAAAATGAGAATAATGTGAGTTCTATGTCAAATGAGTCTCCATCAAAACATTCAACAAAAGCTCAAAATCGAAGTCTCTCATTGAAGTTTCACAAAGCAAAAGAAGAAGTAGCAGCATCGCGCACTGCTGATAATAGTCCACAAACATTTTCTGCTTCTTCAAGAAATGGAAGTGGTGTAAGAAGAAACACTCCCTTTACACCTACAAGAAGTGAGTGTTCATGGAGTTTCTTAGGTGGATACTCTGGTTACCCTAATTACATGGCAAACACTGAATCTTCTAGGGCTAAGGTTAGATCACAAAGTGCACCAAGACAAAGGCATTTTGAGGAATATAGTTCTACTAGAAGGCCTTTTCAAGGTCTTTGGGAAGTGGGTTCTACTAATTCAGACAATGATTCTGATTCAAGGAGCAACAAAGTCTCACCTGCTTTGAGTCGTTTTAATAGGATTGGAAGTAGCAATTTAAGGTGA
Protein sequence

>Msa1423130

MGFLRRLFGAKKPGSSSDGSGTKSDKDNNKRRWSFGKQSSKRKSLPPPSAFNQFDSSTPLERNKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSGVAGSSNKARGLRLPEEIAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKKTADMLRRMQTLVRLQTKARASLVHLSSDNLHSFKSSLSHYPVPEEYEQPHHVYSTKFGGSSILKRCSSNSNFRKIESEKPRFGSNWLDHWMQENSVSQTKNASSKNRHTDEHKIDRILEVDTWKPQLNKNENNVSSMSNESPSKHSTKAQNRSLSLKFHKAKEEVAASRTADNSPQTFSASSRNGSGVRRNTPFTPTRSECSWSFLGGYSGYPNYMANTESSRAKVRSQSAPRQRHFEEYSSTRRPFQGLWEVGSTNSDNDSDSRSNKVSPALSRFNRIGSSNLR*