Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181060 | XP_003592300.1 | 85.463 | 454 | 49 | 8 | 1 | 450 | 1 | 441 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181060 | sp|Q9LYP2|IQD24_ARATH | 35.426 | 446 | 193 | 16 | 1 | 432 | 1 | 365 | 5.85e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181060 | G7IAP8 | 85.463 | 454 | 49 | 8 | 1 | 450 | 1 | 441 | 0.0 | 689 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039510 | Msa0181060 | 0.855047 | 8.198603e-62 | -8.615850e-47 |
| Msa0087220 | Msa0181060 | 0.810048 | 1.398921e-50 | -8.615850e-47 |
| Msa0181060 | Msa1422560 | 0.887677 | 1.156243e-72 | -8.615850e-47 |
| Msa0181060 | Msa1423130 | 0.879431 | 1.253169e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181060 | MtrunA17_Chr1g0203711 | 85.463 | 454 | 49 | 8 | 1 | 450 | 1 | 441 | 0.0 | 689 |
| Msa0181060 | MtrunA17_Chr6g0472551 | 55.882 | 476 | 164 | 18 | 1 | 450 | 1 | 456 | 7.39e-119 | 355 |
| Msa0181060 | MtrunA17_Chr4g0057321 | 31.628 | 430 | 218 | 15 | 3 | 410 | 7 | 382 | 8.79e-25 | 105 |
| Msa0181060 | MtrunA17_Chr8g0340761 | 31.019 | 432 | 197 | 18 | 3 | 400 | 7 | 371 | 4.29e-11 | 64.7 |
| Msa0181060 | MtrunA17_Chr1g0166431 | 52.564 | 78 | 32 | 2 | 335 | 410 | 292 | 366 | 9.79e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0181060 | AT5G07240.1 | 35.426 | 446 | 193 | 16 | 1 | 432 | 1 | 365 | 5.94e-23 | 100 |
| Msa0181060 | AT5G07240.2 | 35.426 | 446 | 193 | 16 | 1 | 432 | 47 | 411 | 1.11e-22 | 100 |
| Msa0181060 | AT5G62070.1 | 41.327 | 196 | 59 | 12 | 230 | 416 | 210 | 358 | 1.40e-19 | 90.9 |
| Msa0181060 | AT4G23060.1 | 29.845 | 516 | 244 | 19 | 3 | 445 | 7 | 477 | 1.13e-11 | 67.0 |
Find 112 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCATAGTTGTCAAGATTT+TGG | 0.144492 | 1_4:+69157674 | Msa0181060:five_prime_UTR |
| TCAGTGTTTGCCATGTAATT+AGG | 0.191553 | 1_4:-69162888 | None:intergenic |
| CGAGTCATCGGCATTTCTAT+TGG | 0.253908 | 1_4:-69157646 | None:intergenic |
| GGATTGGAAGTAGCAATTTA+AGG | 0.254208 | 1_4:+69163084 | Msa0181060:CDS |
| TTCCAAAATCTTGACAACTA+TGG | 0.254874 | 1_4:-69157676 | None:intergenic |
| TGGCAAACACTGAATCTTCT+AGG | 0.269467 | 1_4:+69162898 | Msa0181060:CDS |
| TGCATGTTTGTTGCGTTCTA+AGG | 0.274169 | 1_4:-69158113 | None:intergenic |
| GAGTGTTCATGGAGTTTCTT+AGG | 0.278838 | 1_4:+69162849 | Msa0181060:CDS |
| AATCTTCCTAAAATTTGAAT+TGG | 0.331141 | 1_4:-69162454 | None:intergenic |
| CAGTGTTTGCCATGTAATTA+GGG | 0.331564 | 1_4:-69162887 | None:intergenic |
| TGTGGTTGCTCATATTCTTC+AGG | 0.331662 | 1_4:-69162117 | None:intergenic |
| CTACAAGAAGTGAGTGTTCA+TGG | 0.367097 | 1_4:+69162838 | Msa0181060:CDS |
| AAACCCATGGTTCAACTCAT+TGG | 0.368169 | 1_4:-69157923 | None:intergenic |
| AGGAATATAGTTCTACTAGA+AGG | 0.389996 | 1_4:+69162964 | Msa0181060:CDS |
| ATGCCGCTGCTGAGGTGGTC+AGG | 0.392389 | 1_4:+69158191 | Msa0181060:CDS |
| CATGAACACTCACTTCTTGT+AGG | 0.394316 | 1_4:-69162837 | None:intergenic |
| TCACTTCTTGTAGGTGTAAA+GGG | 0.394452 | 1_4:-69162828 | None:intergenic |
| CTTTGCTTTGCCAATTCAAA+AGG | 0.400510 | 1_4:+69160621 | Msa0181060:CDS |
| CTGATGAACATAAAATTGAT+AGG | 0.400812 | 1_4:+69162577 | Msa0181060:CDS |
| ATGATTTGTAAATCATGAAT+TGG | 0.402034 | 1_4:+69163338 | Msa0181060:three_prime_UTR |
| AGCGCGTGGATTACGGTTGC+CGG | 0.406392 | 1_4:+69158249 | Msa0181060:CDS |
| GTAACAAAGCGCGTGGATTA+CGG | 0.414216 | 1_4:+69158242 | Msa0181060:CDS |
| CATGTCTATAGTACAAAATT+CGG | 0.414346 | 1_4:+69162141 | Msa0181060:CDS |
| CATCCAATGGTCTAACCAAT+TGG | 0.414937 | 1_4:-69162502 | None:intergenic |
| GAAGAAGCAGAAAATGTTTG+TGG | 0.415494 | 1_4:-69162774 | None:intergenic |
| TGCGCGTGGGGTTGAAACTT+TGG | 0.427504 | 1_4:+69157715 | Msa0181060:five_prime_UTR |
| TTAACGGCGGCGATCTCCTC+CGG | 0.427865 | 1_4:-69158268 | None:intergenic |
| TGGTTGAAGGCGGAGGGTGG+TGG | 0.430256 | 1_4:-69158073 | None:intergenic |
| AGGGAGTGGAGGAATCAAAT+TGG | 0.431194 | 1_4:-69158093 | None:intergenic |
| CTCACAAGCAGTGGCGTGGC+GGG | 0.431799 | 1_4:+69158214 | Msa0181060:CDS |
| TTTCAAGGTCTTTGGGAAGT+GGG | 0.434323 | 1_4:+69162990 | Msa0181060:CDS |
| CAGACAATGATTCTGATTCA+AGG | 0.437973 | 1_4:+69163024 | Msa0181060:CDS |
| TCCTCAAAATGCCTTTGTCT+TGG | 0.443738 | 1_4:-69162945 | None:intergenic |
| CTCACTTCTTGTAGGTGTAA+AGG | 0.446179 | 1_4:-69162829 | None:intergenic |
| GTGGTTGCTCATATTCTTCA+GGG | 0.446728 | 1_4:-69162116 | None:intergenic |
| GCTCCAATTGGTTAGACCAT+TGG | 0.447342 | 1_4:+69162499 | Msa0181060:CDS |
| AACAAGAGACGATGGAGCTT+CGG | 0.454907 | 1_4:+69158022 | Msa0181060:CDS |
| TGCAGCACATGCCGCTGCTG+AGG | 0.458833 | 1_4:+69158183 | Msa0181060:CDS |
| CTCTGGTTACCCTAATTACA+TGG | 0.469823 | 1_4:+69162878 | Msa0181060:CDS |
| TTTGTTGCGTTCTAAGGGAG+TGG | 0.472253 | 1_4:-69158107 | None:intergenic |
| ATCAAATTGGTTGAAGGCGG+AGG | 0.474549 | 1_4:-69158080 | None:intergenic |
| CAACCCCACGCGCAAATACA+AGG | 0.474672 | 1_4:-69157706 | None:intergenic |
| AGAGTGTCGGAGACTAGAAT+TGG | 0.480995 | 1_4:-69157761 | None:intergenic |
| CACTGAATCTTCTAGGGCTA+AGG | 0.485595 | 1_4:+69162905 | Msa0181060:CDS |
| AGCACATGCCGCTGCTGAGG+TGG | 0.486201 | 1_4:+69158186 | Msa0181060:CDS |
| AACCACGGTTTGGCTCCAAT+TGG | 0.486425 | 1_4:+69162487 | Msa0181060:CDS |
| GAAGAAGAAGTGGGAACACT+TGG | 0.494828 | 1_4:-69157804 | None:intergenic |
| TGCTGCTGTTGCCGCAGCAA+CGG | 0.494936 | 1_4:-69158140 | None:intergenic |
| TTCAAGGTCTTTGGGAAGTG+GGG | 0.496580 | 1_4:+69162991 | Msa0181060:CDS |
| CTCCTTCGTACCAACAGATA+AGG | 0.500355 | 1_4:+69163429 | Msa0181060:three_prime_UTR |
| TTTGGGGTAACCTTATCTGT+TGG | 0.506472 | 1_4:-69163439 | None:intergenic |
| GAGTCAGAGAAACCACGGTT+TGG | 0.506667 | 1_4:+69162477 | Msa0181060:CDS |
| GGTTCATCCTCCGATGGATC+GGG | 0.520293 | 1_4:+69157977 | Msa0181060:CDS |
| GCATGTTTGTTGCGTTCTAA+GGG | 0.520488 | 1_4:-69158112 | None:intergenic |
| GGGTTCATCCTCCGATGGAT+CGG | 0.522185 | 1_4:+69157976 | Msa0181060:CDS |
| CGTGGACATCGGTGTTGTGT+TGG | 0.527902 | 1_4:+69158568 | Msa0181060:CDS |
| ATCTGTTGGTACGAAGGAGC+TGG | 0.528030 | 1_4:-69163425 | None:intergenic |
| GGAGGAATCAAATTGGTTGA+AGG | 0.530076 | 1_4:-69158086 | None:intergenic |
| ACTTCCCAAAGACCTTGAAA+AGG | 0.531733 | 1_4:-69162987 | None:intergenic |
| AGTTTCTTAGGTGGATACTC+TGG | 0.536101 | 1_4:+69162861 | Msa0181060:CDS |
| TAGGAGATTGAAGAGCAAGT+TGG | 0.536705 | 1_4:+69160540 | Msa0181060:intron |
| GATCCATCGGAGGATGAACC+CGG | 0.542081 | 1_4:-69157974 | None:intergenic |
| AGAATACACTACAAAAGTAC+AGG | 0.551084 | 1_4:-69163261 | None:intergenic |
| GCTTCTTCAAGAAATGGAAG+TGG | 0.558785 | 1_4:+69162789 | Msa0181060:CDS |
| CGGAGTTCTCTTGCATCCAA+TGG | 0.559936 | 1_4:-69162515 | None:intergenic |
| AAGTCGTGTGCACTTGTCAT+TGG | 0.561705 | 1_4:+69161727 | Msa0181060:CDS |
| ACATGCAATCGCCGTTGCTG+CGG | 0.564729 | 1_4:+69158129 | Msa0181060:CDS |
| ATGCCCTTGTATTTGCGCGT+GGG | 0.565226 | 1_4:+69157702 | Msa0181060:five_prime_UTR |
| AAAAGTGGTTGAAGAAGAAG+TGG | 0.565354 | 1_4:-69157814 | None:intergenic |
| GGCATGTGCTGCAGCTAGAG+CGG | 0.567126 | 1_4:-69158173 | None:intergenic |
| TGCCCTTGTATTTGCGCGTG+GGG | 0.567879 | 1_4:+69157703 | Msa0181060:five_prime_UTR |
| CAGGCTCACAAGCAGTGGCG+TGG | 0.571299 | 1_4:+69158210 | Msa0181060:CDS |
| GGCAAACACTGAATCTTCTA+GGG | 0.574429 | 1_4:+69162899 | Msa0181060:CDS |
| AATGCCCTTGTATTTGCGCG+TGG | 0.576676 | 1_4:+69157701 | Msa0181060:five_prime_UTR |
| ATAGTACTGTACCTTGAGGA+TGG | 0.576723 | 1_4:-69162172 | None:intergenic |
| GTCTATAGTACAAAATTCGG+TGG | 0.582232 | 1_4:+69162144 | Msa0181060:CDS |
| TACTATAGTATATAGAGTGT+CGG | 0.587069 | 1_4:-69157774 | None:intergenic |
| TCAAATTGGTTGAAGGCGGA+GGG | 0.587160 | 1_4:-69158079 | None:intergenic |
| CTATTAAAACGACTCAAAGC+AGG | 0.587404 | 1_4:-69163062 | None:intergenic |
| AATTGGTTGAAGGCGGAGGG+TGG | 0.590989 | 1_4:-69158076 | None:intergenic |
| AAACCAATGAGTTGAACCAT+GGG | 0.591599 | 1_4:+69157920 | Msa0181060:exon |
| TATGGATGAAAACGAGTCAT+CGG | 0.592616 | 1_4:-69157658 | None:intergenic |
| CGGTGGATCTTCCATCCTCA+AGG | 0.592734 | 1_4:+69162161 | Msa0181060:CDS |
| AAAACCAATGAGTTGAACCA+TGG | 0.594095 | 1_4:+69157919 | Msa0181060:exon |
| GGATTCTCGAAGTAGATACA+TGG | 0.594900 | 1_4:+69162598 | Msa0181060:CDS |
| AGTGAGAATGAATTTAGTTG+AGG | 0.595609 | 1_4:-69157854 | None:intergenic |
| AACCTTATCTGTTGGTACGA+AGG | 0.597323 | 1_4:-69163431 | None:intergenic |
| GCTCACAAGCAGTGGCGTGG+CGG | 0.599426 | 1_4:+69158213 | Msa0181060:CDS |
| CAACACAACACCGATGTCCA+CGG | 0.601897 | 1_4:-69158567 | None:intergenic |
| AAACCGGGTTCATCCTCCGA+TGG | 0.604772 | 1_4:+69157971 | Msa0181060:CDS |
| TCGGAGACTAGAATTGGTCA+TGG | 0.604931 | 1_4:-69157755 | None:intergenic |
| CACAAAGTGCACCAAGACAA+AGG | 0.608130 | 1_4:+69162934 | Msa0181060:CDS |
| TGTTCATGGAGTTTCTTAGG+TGG | 0.609267 | 1_4:+69162852 | Msa0181060:CDS |
| GTTGCGTTCTAAGGGAGTGG+AGG | 0.612069 | 1_4:-69158104 | None:intergenic |
| GTGGTCAGGCTCACAAGCAG+TGG | 0.622037 | 1_4:+69158205 | Msa0181060:CDS |
| GAGCCTGACCACCTCAGCAG+CGG | 0.622959 | 1_4:-69158194 | None:intergenic |
| GCGAACTGTTCCGTGGACAT+CGG | 0.624819 | 1_4:+69158557 | Msa0181060:CDS |
| TTTGTACTATAGACATGATG+TGG | 0.627968 | 1_4:-69162135 | None:intergenic |
| AAGACAACAACAAGAGACGA+TGG | 0.630191 | 1_4:+69158014 | Msa0181060:CDS |
| GGCAACAGCAGCAGTCGCTG+AGG | 0.632789 | 1_4:+69158150 | Msa0181060:CDS |
| GGAAGTAGTAACAAAGCGCG+TGG | 0.633674 | 1_4:+69158235 | Msa0181060:CDS |
| GGAATCAAATTGGTTGAAGG+CGG | 0.641470 | 1_4:-69158083 | None:intergenic |
| GATGAGATGTACTGTGTGGA+AGG | 0.645280 | 1_4:-69158593 | None:intergenic |
| AACCCCACGCGCAAATACAA+GGG | 0.647665 | 1_4:-69157705 | None:intergenic |
| GCGTGGATTACGGTTGCCGG+AGG | 0.651028 | 1_4:+69158252 | Msa0181060:CDS |
| AGTGAAAGCGAACTGTTCCG+TGG | 0.652133 | 1_4:+69158550 | Msa0181060:CDS |
| GAGTCGCCGGAGAAAACCCA+TGG | 0.652244 | 1_4:-69157936 | None:intergenic |
| AACCAATTGGAGCCAAACCG+TGG | 0.656827 | 1_4:-69162489 | None:intergenic |
| AAAGTGGTTGAAGAAGAAGT+GGG | 0.663309 | 1_4:-69157813 | None:intergenic |
| AGATTGAGTCAGAGAAACCA+CGG | 0.681117 | 1_4:+69162472 | Msa0181060:CDS |
| ATGAGATGTACTGTGTGGAA+GGG | 0.696331 | 1_4:-69158592 | None:intergenic |
| ATTGTGAATTGTGACTCACA+TGG | 0.718227 | 1_4:+69163396 | Msa0181060:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTCTATAAATTATTC+AGG | + | chr1_4:69158425-69158444 | Msa0181060:intron | 10.0% |
| !!! | TTTCATTATTTTTTAAAACT+TGG | - | chr1_4:69158874-69158893 | None:intergenic | 10.0% |
| !!! | ATTAAAATATGTGTAATTTT+AGG | + | chr1_4:69158955-69158974 | Msa0181060:intron | 10.0% |
| !!! | TTAAAATATGTGTAATTTTA+GGG | + | chr1_4:69158956-69158975 | Msa0181060:intron | 10.0% |
| !! | AAATAAAAAGAAAAAATCTT+GGG | - | chr1_4:69159379-69159398 | None:intergenic | 10.0% |
| !! | ATAAAATTAATCTTGAATAT+GGG | - | chr1_4:69159930-69159949 | None:intergenic | 10.0% |
| !!! | TTTTATATTTTAGTCATAAA+AGG | + | chr1_4:69160331-69160350 | Msa0181060:intron | 10.0% |
| !! | AACATTTAAATTGAATTATT+AGG | + | chr1_4:69161984-69162003 | Msa0181060:intron | 10.0% |
| !!! | ATTTGCTTTTTTTTTTTTTT+GGG | + | chr1_4:69163192-69163211 | Msa0181060:three_prime_UTR | 10.0% |
| !!! | TAAAATATGTGTAATTTTAG+GGG | + | chr1_4:69158957-69158976 | Msa0181060:intron | 15.0% |
| !!! | TATTTTTATTTTTACAGAGA+AGG | + | chr1_4:69159034-69159053 | Msa0181060:intron | 15.0% |
| !! | GAAATAAAAAGAAAAAATCT+TGG | - | chr1_4:69159380-69159399 | None:intergenic | 15.0% |
| !! | CAATTTAGTAAAAAAAATCA+GGG | + | chr1_4:69159577-69159596 | Msa0181060:intron | 15.0% |
| !! | CATAAAATTAATCTTGAATA+TGG | - | chr1_4:69159931-69159950 | None:intergenic | 15.0% |
| !!! | CATTTTAATAAAAGAGTTAA+TGG | + | chr1_4:69159984-69160003 | Msa0181060:intron | 15.0% |
| !!! | ATTATTTGCTAATTCATTTA+TGG | - | chr1_4:69160301-69160320 | None:intergenic | 15.0% |
| !! | ATAAAGAAGAAATAAAACAA+GGG | - | chr1_4:69160972-69160991 | None:intergenic | 15.0% |
| !! | ACAAAACAAAAATGAATAAA+AGG | - | chr1_4:69161079-69161098 | None:intergenic | 15.0% |
| !!! | TATTCATTTTTGTTTTGTTT+TGG | + | chr1_4:69161081-69161100 | Msa0181060:intron | 15.0% |
| !! | AGATAAAATAGTTTAAAGAA+AGG | - | chr1_4:69161222-69161241 | None:intergenic | 15.0% |
| !! | AAATTAATCTACTTAATTGT+AGG | + | chr1_4:69162092-69162111 | Msa0181060:intron | 15.0% |
| !!! | CATAATTTGAAGTAATTAAT+TGG | - | chr1_4:69162203-69162222 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAAAAAGCAAA+TGG | - | chr1_4:69163193-69163212 | None:intergenic | 15.0% |
| !!! | CATTTGCTTTTTTTTTTTTT+TGG | + | chr1_4:69163191-69163210 | Msa0181060:three_prime_UTR | 15.0% |
| !!! | TTTTTTCTTTGACTTTTTGA+AGG | - | chr1_4:69157903-69157922 | None:intergenic | 20.0% |
| !! | AAATAGGATAGAGTTAATTA+TGG | - | chr1_4:69158634-69158653 | None:intergenic | 20.0% |
| !! | TTTGCTTATAAAAATGAGAA+TGG | - | chr1_4:69158710-69158729 | None:intergenic | 20.0% |
| !! | CATATTCATTAAATAGCATA+TGG | + | chr1_4:69158742-69158761 | Msa0181060:intron | 20.0% |
| !!! | TGCTTTTTTATTACTTTCTT+TGG | + | chr1_4:69159536-69159555 | Msa0181060:intron | 20.0% |
| !!! | TTTTATTACTTTCTTTGGAT+CGG | + | chr1_4:69159541-69159560 | Msa0181060:intron | 20.0% |
| !! | GCAATTTAGTAAAAAAAATC+AGG | + | chr1_4:69159576-69159595 | Msa0181060:intron | 20.0% |
| !!! | TCTATAAAATGCAACATTTT+CGG | - | chr1_4:69159755-69159774 | None:intergenic | 20.0% |
| !!! | AGATTGTTACTTTGTATAAT+GGG | + | chr1_4:69159774-69159793 | Msa0181060:intron | 20.0% |
| !! | AATAAAAGAGTTAATGGAAT+AGG | + | chr1_4:69159990-69160009 | Msa0181060:intron | 20.0% |
| !! | TTTAGTCATAAAAGGAAATT+TGG | + | chr1_4:69160339-69160358 | Msa0181060:intron | 20.0% |
| !!! | ATGTAATGTGATAATGTAAT+AGG | + | chr1_4:69160521-69160540 | Msa0181060:intron | 20.0% |
| !!! | ATGTTTTTTACCTTTTGAAT+TGG | - | chr1_4:69160634-69160653 | None:intergenic | 20.0% |
| !! | CATAAAGAAGAAATAAAACA+AGG | - | chr1_4:69160973-69160992 | None:intergenic | 20.0% |
| !! | TTTATCATTAAAAAACCGAT+TGG | + | chr1_4:69161030-69161049 | Msa0181060:intron | 20.0% |
| !!! | TTTTGTTTTGGATTAGTATA+TGG | + | chr1_4:69161093-69161112 | Msa0181060:intron | 20.0% |
| !! | AAGTAATGTTACATAAAACT+TGG | - | chr1_4:69161185-69161204 | None:intergenic | 20.0% |
| !! | GTTTAAAGAAAGGATAAAAA+TGG | - | chr1_4:69161212-69161231 | None:intergenic | 20.0% |
| !! | TCTTACTCTTTGATTAAAAA+TGG | - | chr1_4:69161255-69161274 | None:intergenic | 20.0% |
| !!! | TTTTTAATCAAAGAGTAAGA+AGG | + | chr1_4:69161255-69161274 | Msa0181060:intron | 20.0% |
| !!! | CAACATATTTTGATGAATTT+TGG | + | chr1_4:69161564-69161583 | Msa0181060:intron | 20.0% |
| !!! | ATATTTTGATGAATTTTGGA+AGG | + | chr1_4:69161568-69161587 | Msa0181060:intron | 20.0% |
| !!! | ACATAATTTTGCAAAATCAT+AGG | + | chr1_4:69161894-69161913 | Msa0181060:intron | 20.0% |
| !!! | AAAAGAAATTGTTTTTTGAC+TGG | + | chr1_4:69162023-69162042 | Msa0181060:intron | 20.0% |
| !! | AGATTAATTTACAACACAAA+AGG | - | chr1_4:69162082-69162101 | None:intergenic | 20.0% |
| !! | TCTATTTGAAGAATAAACAA+TGG | + | chr1_4:69162276-69162295 | Msa0181060:intron | 20.0% |
| !! | AATCTTCCTAAAATTTGAAT+TGG | - | chr1_4:69162457-69162476 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTGGGTGTT+CGG | + | chr1_4:69163199-69163218 | Msa0181060:three_prime_UTR | 20.0% |
| !!! | ATGATTTGTAAATCATGAAT+TGG | + | chr1_4:69163338-69163357 | Msa0181060:three_prime_UTR | 20.0% |
| ! | TACTATAGTATATAGAGTGT+CGG | - | chr1_4:69157777-69157796 | None:intergenic | 25.0% |
| !!! | AAAAGCTGACTGTATTTTAA+CGG | - | chr1_4:69158287-69158306 | None:intergenic | 25.0% |
| ! | TAGAAAAATTCGATTTCAAC+TGG | - | chr1_4:69158415-69158434 | None:intergenic | 25.0% |
| ! | AATTATGTCAACCAACAAAA+AGG | + | chr1_4:69158464-69158483 | Msa0181060:intron | 25.0% |
| !!! | AAAGTATTTGACCTTTTTGT+TGG | - | chr1_4:69158478-69158497 | None:intergenic | 25.0% |
| ! | AAAAATGAGAATGGAGTATA+TGG | - | chr1_4:69158701-69158720 | None:intergenic | 25.0% |
| !! | ATGAGTAATATTTTGTCTCA+TGG | + | chr1_4:69159057-69159076 | Msa0181060:intron | 25.0% |
| !! | TGAGTAATATTTTGTCTCAT+GGG | + | chr1_4:69159058-69159077 | Msa0181060:intron | 25.0% |
| ! | TGGACAATGCATAATATATA+TGG | + | chr1_4:69159097-69159116 | Msa0181060:intron | 25.0% |
| ! | GGACAATGCATAATATATAT+GGG | + | chr1_4:69159098-69159117 | Msa0181060:intron | 25.0% |
| !!! | TTTTTTGTCAAGTAGTTTAG+TGG | - | chr1_4:69159166-69159185 | None:intergenic | 25.0% |
| ! | CAAAATAATCTGCATATAGA+TGG | + | chr1_4:69159220-69159239 | Msa0181060:intron | 25.0% |
| ! | ATTACTGTAAATAGGAATGA+AGG | - | chr1_4:69159256-69159275 | None:intergenic | 25.0% |
| ! | TCCTATTTACAGTAATATTG+TGG | + | chr1_4:69159260-69159279 | Msa0181060:intron | 25.0% |
| ! | TCCACAATATTACTGTAAAT+AGG | - | chr1_4:69159264-69159283 | None:intergenic | 25.0% |
| ! | AAATGACACATAAAGCAAAT+TGG | - | chr1_4:69159338-69159357 | None:intergenic | 25.0% |
| ! | AAGAAAAGTTCCAAAAACTT+AGG | - | chr1_4:69159412-69159431 | None:intergenic | 25.0% |
| ! | TTTGATTATAATGTGTTTGG+TGG | - | chr1_4:69159458-69159477 | None:intergenic | 25.0% |
| ! | GAGTTTGATTATAATGTGTT+TGG | - | chr1_4:69159461-69159480 | None:intergenic | 25.0% |
| !! | TAATGCACTCTTAATTTTCA+GGG | - | chr1_4:69159629-69159648 | None:intergenic | 25.0% |
| !! | ATAATGCACTCTTAATTTTC+AGG | - | chr1_4:69159630-69159649 | None:intergenic | 25.0% |
| !! | ATTTTCGGATGAAAATTACA+GGG | - | chr1_4:69159740-69159759 | None:intergenic | 25.0% |
| !!! | GAGATTGTTACTTTGTATAA+TGG | + | chr1_4:69159773-69159792 | Msa0181060:intron | 25.0% |
| ! | ACACTATACTATAATTGTAG+AGG | - | chr1_4:69159802-69159821 | None:intergenic | 25.0% |
| ! | ATGATAGTTACCTTTATATG+AGG | + | chr1_4:69160400-69160419 | Msa0181060:intron | 25.0% |
| !!! | TTTTAGTTTGCCTCATATAA+AGG | - | chr1_4:69160413-69160432 | None:intergenic | 25.0% |
| ! | TTATATGAGGCAAACTAAAA+TGG | + | chr1_4:69160413-69160432 | Msa0181060:intron | 25.0% |
| !!! | GTAACCACTTATTTTGTTTT+TGG | + | chr1_4:69160562-69160581 | Msa0181060:CDS | 25.0% |
| ! | AAATAAAACAAGGGAATAGA+AGG | - | chr1_4:69160963-69160982 | None:intergenic | 25.0% |
| ! | AACAATCAAATTGAACCAAT+CGG | - | chr1_4:69161048-69161067 | None:intergenic | 25.0% |
| ! | TTCAATTTGATTGTTACTCT+TGG | + | chr1_4:69161053-69161072 | Msa0181060:intron | 25.0% |
| !!! | CTTATTTTCATAAGTTCTTC+AGG | - | chr1_4:69161441-69161460 | None:intergenic | 25.0% |
| !!! | AAAAGAATTTGCTACTTACA+GGG | - | chr1_4:69161790-69161809 | None:intergenic | 25.0% |
| !!! | AAAAAGAATTTGCTACTTAC+AGG | - | chr1_4:69161791-69161810 | None:intergenic | 25.0% |
| !! | ACTGGCTTAAAAATAATGAT+TGG | + | chr1_4:69162041-69162060 | Msa0181060:intron | 25.0% |
| ! | CATGTCTATAGTACAAAATT+CGG | + | chr1_4:69162141-69162160 | Msa0181060:CDS | 25.0% |
| ! | AGTAATTCTTATCACTTTGA+TGG | + | chr1_4:69162247-69162266 | Msa0181060:intron | 25.0% |
| ! | CTGATGAACATAAAATTGAT+AGG | + | chr1_4:69162577-69162596 | Msa0181060:CDS | 25.0% |
| !! | TTTCTATTTTGTGGAAAAAG+TGG | - | chr1_4:69163156-69163175 | None:intergenic | 25.0% |
| !!! | TGTCTCTTTTTTCTATTTTG+TGG | - | chr1_4:69163165-69163184 | None:intergenic | 25.0% |
| ! | ATCCATAGTTGTCAAGATTT+TGG | + | chr1_4:69157674-69157693 | Msa0181060:five_prime_UTR | 30.0% |
| TTCCAAAATCTTGACAACTA+TGG | - | chr1_4:69157679-69157698 | None:intergenic | 30.0% | |
| ! | AAGAAGTGTGAATGAAAAAG+TGG | - | chr1_4:69157832-69157851 | None:intergenic | 30.0% |
| AGTGAGAATGAATTTAGTTG+AGG | - | chr1_4:69157857-69157876 | None:intergenic | 30.0% | |
| !! | TTCTTTGACTTTTTGAAGGA+AGG | - | chr1_4:69157899-69157918 | None:intergenic | 30.0% |
| AAGAAAATTGAGAATGAGCA+TGG | - | chr1_4:69158389-69158408 | None:intergenic | 30.0% | |
| ATTATTCAGGAAACATGCAT+TGG | + | chr1_4:69158438-69158457 | Msa0181060:intron | 30.0% | |
| AGGATAGAGTTAATTATGGA+AGG | - | chr1_4:69158630-69158649 | None:intergenic | 30.0% | |
| !! | AATATGTGTAATTTTAGGGG+AGG | + | chr1_4:69158960-69158979 | Msa0181060:intron | 30.0% |
| !! | ATATGTGTAATTTTAGGGGA+GGG | + | chr1_4:69158961-69158980 | Msa0181060:intron | 30.0% |
| CATAATATATATGGGAAACG+AGG | + | chr1_4:69159106-69159125 | Msa0181060:intron | 30.0% | |
| AAAAATCTTGGGTTTGAATG+TGG | - | chr1_4:69159368-69159387 | None:intergenic | 30.0% | |
| ! | CATTTTCGGATGAAAATTAC+AGG | - | chr1_4:69159741-69159760 | None:intergenic | 30.0% |
| TGAAGGAAAAAAATTTCAGG+TGG | + | chr1_4:69160097-69160116 | Msa0181060:intron | 30.0% | |
| ! | GAAGGAAAAAAATTTCAGGT+GGG | + | chr1_4:69160098-69160117 | Msa0181060:intron | 30.0% |
| TCACATCTATCCAAATATGT+GGG | - | chr1_4:69160232-69160251 | None:intergenic | 30.0% | |
| TATCATAACTCTTTGTCTAG+AGG | - | chr1_4:69160386-69160405 | None:intergenic | 30.0% | |
| AGGTAAAAAACATTCCTTTG+TGG | + | chr1_4:69160641-69160660 | Msa0181060:intron | 30.0% | |
| GGTAAAAAACATTCCTTTGT+GGG | + | chr1_4:69160642-69160661 | Msa0181060:intron | 30.0% | |
| !!! | AAAGTACTTTTTTCCCACAA+AGG | - | chr1_4:69160658-69160677 | None:intergenic | 30.0% |
| ACACTATAATACTAGAGAGA+GGG | + | chr1_4:69160755-69160774 | Msa0181060:intron | 30.0% | |
| AATTTGAGAAATGACAAGCA+AGG | - | chr1_4:69160887-69160906 | None:intergenic | 30.0% | |
| AAAGAACAATTAGTACCATG+AGG | - | chr1_4:69161013-69161032 | None:intergenic | 30.0% | |
| ! | TTGGAAGACTTGTTCAATTT+GGG | - | chr1_4:69161166-69161185 | None:intergenic | 30.0% |
| !!! | TGTTATGTATGTGCTGTTTT+AGG | + | chr1_4:69161948-69161967 | Msa0181060:intron | 30.0% |
| AATTTACAACACAAAAGGAG+AGG | - | chr1_4:69162077-69162096 | None:intergenic | 30.0% | |
| TTTGTACTATAGACATGATG+TGG | - | chr1_4:69162138-69162157 | None:intergenic | 30.0% | |
| CAATAAGTTATGCATGCATT+AGG | - | chr1_4:69162345-69162364 | None:intergenic | 30.0% | |
| ! | GCAGTTCCAATTCAAATTTT+AGG | + | chr1_4:69162448-69162467 | Msa0181060:CDS | 30.0% |
| !! | GCTTTTGTTGAATGTTTTGA+TGG | - | chr1_4:69162678-69162697 | None:intergenic | 30.0% |
| ! | TTTTCTGCTTCTTCAAGAAA+TGG | + | chr1_4:69162783-69162802 | Msa0181060:CDS | 30.0% |
| ! | AGGAATATAGTTCTACTAGA+AGG | + | chr1_4:69162964-69162983 | Msa0181060:CDS | 30.0% |
| !! | TTGAGTCGTTTTAATAGGAT+TGG | + | chr1_4:69163068-69163087 | Msa0181060:CDS | 30.0% |
| ! | AGAATACACTACAAAAGTAC+AGG | - | chr1_4:69163264-69163283 | None:intergenic | 30.0% |
| ! | ATTTTGCTTAGTAATGTGCA+TGG | + | chr1_4:69163368-69163387 | Msa0181060:three_prime_UTR | 30.0% |
| TATGGATGAAAACGAGTCAT+CGG | - | chr1_4:69157661-69157680 | None:intergenic | 35.0% | |
| AAAGTGGTTGAAGAAGAAGT+GGG | - | chr1_4:69157816-69157835 | None:intergenic | 35.0% | |
| AAAAGTGGTTGAAGAAGAAG+TGG | - | chr1_4:69157817-69157836 | None:intergenic | 35.0% | |
| !! | TTGACTTTTTGAAGGAAGGA+AGG | - | chr1_4:69157895-69157914 | None:intergenic | 35.0% |
| ! | AAAACCAATGAGTTGAACCA+TGG | + | chr1_4:69157919-69157938 | Msa0181060:exon | 35.0% |
| ! | AAACCAATGAGTTGAACCAT+GGG | + | chr1_4:69157920-69157939 | Msa0181060:exon | 35.0% |
| ! | AAAATACAGTCAGCTTTTCG+TGG | + | chr1_4:69158289-69158308 | Msa0181060:CDS | 35.0% |
| ! | GGTCAAATACTTTTCAACAG+TGG | + | chr1_4:69158485-69158504 | Msa0181060:intron | 35.0% |
| ATTTGATGAGATGTACTGTG+TGG | - | chr1_4:69158600-69158619 | None:intergenic | 35.0% | |
| ! | TGTCTGTTTTCTCTGTTGTA+TGG | + | chr1_4:69159287-69159306 | Msa0181060:intron | 35.0% |
| AGTTCCAAAAACTTAGGAGA+GGG | - | chr1_4:69159406-69159425 | None:intergenic | 35.0% | |
| AAGTTCCAAAAACTTAGGAG+AGG | - | chr1_4:69159407-69159426 | None:intergenic | 35.0% | |
| TTCTTTGGATCGGAAACATT+AGG | + | chr1_4:69159551-69159570 | Msa0181060:intron | 35.0% | |
| TCTTTGGATCGGAAACATTA+GGG | + | chr1_4:69159552-69159571 | Msa0181060:intron | 35.0% | |
| !! | AATATGGTGCTGCAACAATA+GGG | - | chr1_4:69159896-69159915 | None:intergenic | 35.0% |
| AGGAGTAGCAATAGATACAT+AGG | + | chr1_4:69160010-69160029 | Msa0181060:intron | 35.0% | |
| TAGCAATAGATACATAGGAG+TGG | + | chr1_4:69160015-69160034 | Msa0181060:intron | 35.0% | |
| GGGTGAAGGAAAAAAATTTC+AGG | + | chr1_4:69160094-69160113 | Msa0181060:intron | 35.0% | |
| CACATCTATCCAAATATGTG+GGG | - | chr1_4:69160231-69160250 | None:intergenic | 35.0% | |
| CTCACATCTATCCAAATATG+TGG | - | chr1_4:69160233-69160252 | None:intergenic | 35.0% | |
| CACATATTTGGATAGATGTG+AGG | + | chr1_4:69160231-69160250 | Msa0181060:intron | 35.0% | |
| !! | GAAATTTGGTAGTCTTGTGA+GGG | + | chr1_4:69160353-69160372 | Msa0181060:intron | 35.0% |
| GCAGCCAAAAACAAAATAAG+TGG | - | chr1_4:69160569-69160588 | None:intergenic | 35.0% | |
| !!! | ATTTTGTTTTTGGCTGCGTA+TGG | + | chr1_4:69160572-69160591 | Msa0181060:CDS | 35.0% |
| !!! | TTTTGTTTTTGGCTGCGTAT+GGG | + | chr1_4:69160573-69160592 | Msa0181060:CDS | 35.0% |
| CTTTGCTTTGCCAATTCAAA+AGG | + | chr1_4:69160621-69160640 | Msa0181060:CDS | 35.0% | |
| ACATTAACGTGAAAGAAGCA+AGG | + | chr1_4:69160720-69160739 | Msa0181060:intron | 35.0% | |
| CACACTATAATACTAGAGAG+AGG | + | chr1_4:69160754-69160773 | Msa0181060:intron | 35.0% | |
| !!! | GATTTTCAGCTTGTTATGCA+AGG | + | chr1_4:69160831-69160850 | Msa0181060:intron | 35.0% |
| ! | GTTTTCTAAATGATGCCTCA+TGG | + | chr1_4:69160995-69161014 | Msa0181060:intron | 35.0% |
| ! | TGGAAGACTTGTTCAATTTG+GGG | - | chr1_4:69161165-69161184 | None:intergenic | 35.0% |
| ! | CTTGGAAGACTTGTTCAATT+TGG | - | chr1_4:69161167-69161186 | None:intergenic | 35.0% |
| TCTAGTCTATTTGCACTTGT+AGG | - | chr1_4:69161309-69161328 | None:intergenic | 35.0% | |
| !! | TTGATGAATTTTGGAAGGCA+AGG | + | chr1_4:69161573-69161592 | Msa0181060:intron | 35.0% |
| ! | CAGTTTTCTTTCTCACAATG+TGG | - | chr1_4:69161652-69161671 | None:intergenic | 35.0% |
| ! | AGTGGTGTCAATAACTCATT+GGG | - | chr1_4:69161825-69161844 | None:intergenic | 35.0% |
| ! | TAGTGGTGTCAATAACTCAT+TGG | - | chr1_4:69161826-69161845 | None:intergenic | 35.0% |
| CACCACTAATATGTGCAATT+TGG | + | chr1_4:69161838-69161857 | Msa0181060:intron | 35.0% | |
| TGCCAAATTGCACATATTAG+TGG | - | chr1_4:69161843-69161862 | None:intergenic | 35.0% | |
| !!! | ATGTATGTGCTGTTTTAGGT+TGG | + | chr1_4:69161952-69161971 | Msa0181060:intron | 35.0% |
| !!! | TGCTGTTTTAGGTTGGATTA+TGG | + | chr1_4:69161959-69161978 | Msa0181060:intron | 35.0% |
| GTCTATAGTACAAAATTCGG+TGG | + | chr1_4:69162144-69162163 | Msa0181060:CDS | 35.0% | |
| GATAATAGTACTGTACCTTG+AGG | - | chr1_4:69162179-69162198 | None:intergenic | 35.0% | |
| AAGTTTAGCCACAAACACAT+AGG | - | chr1_4:69162420-69162439 | None:intergenic | 35.0% | |
| ! | ATTCTTCGATGATGCGTTTT+TGG | - | chr1_4:69162550-69162569 | None:intergenic | 35.0% |
| GAAGAAGCAGAAAATGTTTG+TGG | - | chr1_4:69162777-69162796 | None:intergenic | 35.0% | |
| TCACTTCTTGTAGGTGTAAA+GGG | - | chr1_4:69162831-69162850 | None:intergenic | 35.0% | |
| CAGTGTTTGCCATGTAATTA+GGG | - | chr1_4:69162890-69162909 | None:intergenic | 35.0% | |
| TCAGTGTTTGCCATGTAATT+AGG | - | chr1_4:69162891-69162910 | None:intergenic | 35.0% | |
| CAGACAATGATTCTGATTCA+AGG | + | chr1_4:69163024-69163043 | Msa0181060:CDS | 35.0% | |
| CTATTAAAACGACTCAAAGC+AGG | - | chr1_4:69163065-69163084 | None:intergenic | 35.0% | |
| !! | CTGCTTTGAGTCGTTTTAAT+AGG | + | chr1_4:69163063-69163082 | Msa0181060:CDS | 35.0% |
| GGATTGGAAGTAGCAATTTA+AGG | + | chr1_4:69163084-69163103 | Msa0181060:CDS | 35.0% | |
| ATTGTGAATTGTGACTCACA+TGG | + | chr1_4:69163396-69163415 | Msa0181060:three_prime_UTR | 35.0% | |
| AAACCCATGGTTCAACTCAT+TGG | - | chr1_4:69157926-69157945 | None:intergenic | 40.0% | |
| ! | AGATTTTGTACCCGATCCAT+CGG | - | chr1_4:69157990-69158009 | None:intergenic | 40.0% |
| AAGACAACAACAAGAGACGA+TGG | + | chr1_4:69158014-69158033 | Msa0181060:CDS | 40.0% | |
| GGAATCAAATTGGTTGAAGG+CGG | - | chr1_4:69158086-69158105 | None:intergenic | 40.0% | |
| GGAGGAATCAAATTGGTTGA+AGG | - | chr1_4:69158089-69158108 | None:intergenic | 40.0% | |
| ! | GCATGTTTGTTGCGTTCTAA+GGG | - | chr1_4:69158115-69158134 | None:intergenic | 40.0% |
| ! | TGCATGTTTGTTGCGTTCTA+AGG | - | chr1_4:69158116-69158135 | None:intergenic | 40.0% |
| !!! | AGCTGACTGTATTTTAACGG+CGG | - | chr1_4:69158284-69158303 | None:intergenic | 40.0% |
| ! | GTCAGCTTTTCGTGGTTATT+TGG | + | chr1_4:69158297-69158316 | Msa0181060:CDS | 40.0% |
| ATGAGATGTACTGTGTGGAA+GGG | - | chr1_4:69158595-69158614 | None:intergenic | 40.0% | |
| !! | TAATTTTAGGGGAGGGACAA+TGG | + | chr1_4:69158968-69158987 | Msa0181060:intron | 40.0% |
| TTGGGTTTGAATGTGGCTAT+AGG | - | chr1_4:69159361-69159380 | None:intergenic | 40.0% | |
| CGTTACAGAGTAGGATGTAT+GGG | - | chr1_4:69159690-69159709 | None:intergenic | 40.0% | |
| ACGTTACAGAGTAGGATGTA+TGG | - | chr1_4:69159691-69159710 | None:intergenic | 40.0% | |
| TGCAAGATACGTTACAGAGT+AGG | - | chr1_4:69159699-69159718 | None:intergenic | 40.0% | |
| TGTAACGTATCTTGCACACT+TGG | + | chr1_4:69159703-69159722 | Msa0181060:intron | 40.0% | |
| GTAACGTATCTTGCACACTT+GGG | + | chr1_4:69159704-69159723 | Msa0181060:intron | 40.0% | |
| TAACGTATCTTGCACACTTG+GGG | + | chr1_4:69159705-69159724 | Msa0181060:intron | 40.0% | |
| !! | CAATATGGTGCTGCAACAAT+AGG | - | chr1_4:69159897-69159916 | None:intergenic | 40.0% |
| ! | ATTTTCTCCACCTTAGCCAT+GGG | - | chr1_4:69160052-69160071 | None:intergenic | 40.0% |
| ! | TATTTTCTCCACCTTAGCCA+TGG | - | chr1_4:69160053-69160072 | None:intergenic | 40.0% |
| ACCCACATCTCAAACAAGTT+GGG | - | chr1_4:69160078-69160097 | None:intergenic | 40.0% | |
| ACAAGAAAGCCCCACATATT+TGG | + | chr1_4:69160219-69160238 | Msa0181060:intron | 40.0% | |
| !! | GGAAATTTGGTAGTCTTGTG+AGG | + | chr1_4:69160352-69160371 | Msa0181060:intron | 40.0% |
| CATAACTCTTTGTCTAGAGG+TGG | - | chr1_4:69160383-69160402 | None:intergenic | 40.0% | |
| CAAACTAAAATGGCCCTTTG+TGG | + | chr1_4:69160423-69160442 | Msa0181060:intron | 40.0% | |
| ! | ATCAACCACGTTTGAGGTAA+TGG | + | chr1_4:69160463-69160482 | Msa0181060:intron | 40.0% |
| AACCCTACCTACTAGTACTT+GGG | - | chr1_4:69160490-69160509 | None:intergenic | 40.0% | |
| TAGGAGATTGAAGAGCAAGT+TGG | + | chr1_4:69160540-69160559 | Msa0181060:intron | 40.0% | |
| !!! | TTTGTTTTTGGCTGCGTATG+GGG | + | chr1_4:69160574-69160593 | Msa0181060:CDS | 40.0% |
| GGGTGTACTAAAGTTCAACA+TGG | - | chr1_4:69161145-69161164 | None:intergenic | 40.0% | |
| !! | GTTGAGAGCACTTAAAGCTT+TGG | + | chr1_4:69161601-69161620 | Msa0181060:intron | 40.0% |
| AGAAAACTGCAGATATGCTC+AGG | + | chr1_4:69161663-69161682 | Msa0181060:intron | 40.0% | |
| ! | GTGGTGTCAATAACTCATTG+GGG | - | chr1_4:69161824-69161843 | None:intergenic | 40.0% |
| GTGGTTGCTCATATTCTTCA+GGG | - | chr1_4:69162119-69162138 | None:intergenic | 40.0% | |
| TGTGGTTGCTCATATTCTTC+AGG | - | chr1_4:69162120-69162139 | None:intergenic | 40.0% | |
| ATAGTACTGTACCTTGAGGA+TGG | - | chr1_4:69162175-69162194 | None:intergenic | 40.0% | |
| CGACTTAACCTATGTGTTTG+TGG | + | chr1_4:69162409-69162428 | Msa0181060:intron | 40.0% | |
| AGATTGAGTCAGAGAAACCA+CGG | + | chr1_4:69162472-69162491 | Msa0181060:CDS | 40.0% | |
| CATCCAATGGTCTAACCAAT+TGG | - | chr1_4:69162505-69162524 | None:intergenic | 40.0% | |
| GGATTCTCGAAGTAGATACA+TGG | + | chr1_4:69162598-69162617 | Msa0181060:CDS | 40.0% | |
| GCTTCTTCAAGAAATGGAAG+TGG | + | chr1_4:69162789-69162808 | Msa0181060:CDS | 40.0% | |
| CTCACTTCTTGTAGGTGTAA+AGG | - | chr1_4:69162832-69162851 | None:intergenic | 40.0% | |
| CATGAACACTCACTTCTTGT+AGG | - | chr1_4:69162840-69162859 | None:intergenic | 40.0% | |
| CTACAAGAAGTGAGTGTTCA+TGG | + | chr1_4:69162838-69162857 | Msa0181060:CDS | 40.0% | |
| GAGTGTTCATGGAGTTTCTT+AGG | + | chr1_4:69162849-69162868 | Msa0181060:CDS | 40.0% | |
| TGTTCATGGAGTTTCTTAGG+TGG | + | chr1_4:69162852-69162871 | Msa0181060:CDS | 40.0% | |
| AGTTTCTTAGGTGGATACTC+TGG | + | chr1_4:69162861-69162880 | Msa0181060:CDS | 40.0% | |
| CTCTGGTTACCCTAATTACA+TGG | + | chr1_4:69162878-69162897 | Msa0181060:CDS | 40.0% | |
| TGGCAAACACTGAATCTTCT+AGG | + | chr1_4:69162898-69162917 | Msa0181060:CDS | 40.0% | |
| GGCAAACACTGAATCTTCTA+GGG | + | chr1_4:69162899-69162918 | Msa0181060:CDS | 40.0% | |
| !!! | ACCAAGACAAAGGCATTTTG+AGG | + | chr1_4:69162944-69162963 | Msa0181060:CDS | 40.0% |
| TCCTCAAAATGCCTTTGTCT+TGG | - | chr1_4:69162948-69162967 | None:intergenic | 40.0% | |
| ! | TCTACTAGAAGGCCTTTTCA+AGG | + | chr1_4:69162975-69162994 | Msa0181060:CDS | 40.0% |
| !! | AAGGCCTTTTCAAGGTCTTT+GGG | + | chr1_4:69162983-69163002 | Msa0181060:CDS | 40.0% |
| ACTTCCCAAAGACCTTGAAA+AGG | - | chr1_4:69162990-69163009 | None:intergenic | 40.0% | |
| !! | TTTTCAAGGTCTTTGGGAAG+TGG | + | chr1_4:69162989-69163008 | Msa0181060:CDS | 40.0% |
| ! | TTTCAAGGTCTTTGGGAAGT+GGG | + | chr1_4:69162990-69163009 | Msa0181060:CDS | 40.0% |
| AACCTTATCTGTTGGTACGA+AGG | - | chr1_4:69163434-69163453 | None:intergenic | 40.0% | |
| CGAGTCATCGGCATTTCTAT+TGG | - | chr1_4:69157649-69157668 | None:intergenic | 45.0% | |
| TCGGAGACTAGAATTGGTCA+TGG | - | chr1_4:69157758-69157777 | None:intergenic | 45.0% | |
| !! | AGAGTGTCGGAGACTAGAAT+TGG | - | chr1_4:69157764-69157783 | None:intergenic | 45.0% |
| GAAGAAGAAGTGGGAACACT+TGG | - | chr1_4:69157807-69157826 | None:intergenic | 45.0% | |
| ! | GTTGAACCATGGGTTTTCTC+CGG | + | chr1_4:69157930-69157949 | Msa0181060:exon | 45.0% |
| ACTCTTTGGCGCCAAAAAAC+CGG | + | chr1_4:69157955-69157974 | Msa0181060:CDS | 45.0% | |
| AACAAGAGACGATGGAGCTT+CGG | + | chr1_4:69158022-69158041 | Msa0181060:CDS | 45.0% | |
| TCAAATTGGTTGAAGGCGGA+GGG | - | chr1_4:69158082-69158101 | None:intergenic | 45.0% | |
| ATCAAATTGGTTGAAGGCGG+AGG | - | chr1_4:69158083-69158102 | None:intergenic | 45.0% | |
| AGGGAGTGGAGGAATCAAAT+TGG | - | chr1_4:69158096-69158115 | None:intergenic | 45.0% | |
| !! | TTTGTTGCGTTCTAAGGGAG+TGG | - | chr1_4:69158110-69158129 | None:intergenic | 45.0% |
| ! | GTAACAAAGCGCGTGGATTA+CGG | + | chr1_4:69158242-69158261 | Msa0181060:CDS | 45.0% |
| GATGAGATGTACTGTGTGGA+AGG | - | chr1_4:69158596-69158615 | None:intergenic | 45.0% | |
| ! | TGGGTCTAGCTCAGTTAGTA+TGG | + | chr1_4:69159077-69159096 | Msa0181060:intron | 45.0% |
| CCAAAAACTTAGGAGAGGGA+GGG | - | chr1_4:69159402-69159421 | None:intergenic | 45.0% | |
| TCCAAAAACTTAGGAGAGGG+AGG | - | chr1_4:69159403-69159422 | None:intergenic | 45.0% | |
| ! | ATGGGTGACTAGCTGCAATA+TGG | - | chr1_4:69159912-69159931 | None:intergenic | 45.0% |
| AATAGAGACTCCCATGGCTA+AGG | + | chr1_4:69160039-69160058 | Msa0181060:intron | 45.0% | |
| ! | TGCCCAACTTGTTTGAGATG+TGG | + | chr1_4:69160073-69160092 | Msa0181060:intron | 45.0% |
| ! | GCCCAACTTGTTTGAGATGT+GGG | + | chr1_4:69160074-69160093 | Msa0181060:intron | 45.0% |
| CACCCACATCTCAAACAAGT+TGG | - | chr1_4:69160079-69160098 | None:intergenic | 45.0% | |
| ! | CTTGTTTGAGATGTGGGTGA+AGG | + | chr1_4:69160080-69160099 | Msa0181060:intron | 45.0% |
| !! | AAACGTGGTTGATGATGGGT+TGG | - | chr1_4:69160456-69160475 | None:intergenic | 45.0% |
| !! | CCTCAAACGTGGTTGATGAT+GGG | - | chr1_4:69160460-69160479 | None:intergenic | 45.0% |
| !! | ACCTCAAACGTGGTTGATGA+TGG | - | chr1_4:69160461-69160480 | None:intergenic | 45.0% |
| TAATGGCCCCAAGTACTAGT+AGG | + | chr1_4:69160480-69160499 | Msa0181060:intron | 45.0% | |
| ACCCTACCTACTAGTACTTG+GGG | - | chr1_4:69160489-69160508 | None:intergenic | 45.0% | |
| CAACCCTACCTACTAGTACT+TGG | - | chr1_4:69160491-69160510 | None:intergenic | 45.0% | |
| AATACTAGAGAGAGGGAGAG+AGG | + | chr1_4:69160762-69160781 | Msa0181060:intron | 45.0% | |
| !! | TCAGCTTGTTATGCAAGGCA+AGG | + | chr1_4:69160836-69160855 | Msa0181060:intron | 45.0% |
| !! | CAGCTTGTTATGCAAGGCAA+GGG | + | chr1_4:69160837-69160856 | Msa0181060:intron | 45.0% |
| TTGTTATGCAAGGCAAGGGA+AGG | + | chr1_4:69160841-69160860 | Msa0181060:intron | 45.0% | |
| TTTGGTGAAGTTGCAAGCAC+TGG | + | chr1_4:69161619-69161638 | Msa0181060:intron | 45.0% | |
| !! | TGAAGTTGCAAGCACTGGTT+CGG | + | chr1_4:69161624-69161643 | Msa0181060:intron | 45.0% |
| ATTGGTGCGACTACAGACAA+AGG | + | chr1_4:69161697-69161716 | Msa0181060:intron | 45.0% | |
| AAGTCGTGTGCACTTGTCAT+TGG | + | chr1_4:69161727-69161746 | Msa0181060:CDS | 45.0% | |
| GCTCCAATTGGTTAGACCAT+TGG | + | chr1_4:69162499-69162518 | Msa0181060:CDS | 45.0% | |
| !!! | TGCGTTTTTGGTCTGGCTAA+CGG | - | chr1_4:69162538-69162557 | None:intergenic | 45.0% |
| !!! | TCGATGATGCGTTTTTGGTC+TGG | - | chr1_4:69162545-69162564 | None:intergenic | 45.0% |
| !! | CACTGAATCTTCTAGGGCTA+AGG | + | chr1_4:69162905-69162924 | Msa0181060:CDS | 45.0% |
| CACAAAGTGCACCAAGACAA+AGG | + | chr1_4:69162934-69162953 | Msa0181060:CDS | 45.0% | |
| !! | GAAGGCCTTTTCAAGGTCTT+TGG | + | chr1_4:69162982-69163001 | Msa0181060:CDS | 45.0% |
| ! | TTCAAGGTCTTTGGGAAGTG+GGG | + | chr1_4:69162991-69163010 | Msa0181060:CDS | 45.0% |
| CTCCTTCGTACCAACAGATA+AGG | + | chr1_4:69163429-69163448 | Msa0181060:three_prime_UTR | 45.0% | |
| !! | AATAAAAAAAAAATAGAAAT+AGG | - | chr1_4:69158650-69158669 | None:intergenic | 5.0% |
| !! | TAAAATTAACATATATTTAT+TGG | + | chr1_4:69158840-69158859 | Msa0181060:intron | 5.0% |
| !!! | TATTTTTTAAAATAAGAAAA+CGG | + | chr1_4:69159194-69159213 | Msa0181060:intron | 5.0% |
| AATGCCCTTGTATTTGCGCG+TGG | + | chr1_4:69157701-69157720 | Msa0181060:five_prime_UTR | 50.0% | |
| ATGCCCTTGTATTTGCGCGT+GGG | + | chr1_4:69157702-69157721 | Msa0181060:five_prime_UTR | 50.0% | |
| AACCCCACGCGCAAATACAA+GGG | - | chr1_4:69157708-69157727 | None:intergenic | 50.0% | |
| CTCTTTGGCGCCAAAAAACC+GGG | + | chr1_4:69157956-69157975 | Msa0181060:CDS | 50.0% | |
| !!! | GGAGGATGAACCCGGTTTTT+TGG | - | chr1_4:69157969-69157988 | None:intergenic | 50.0% |
| ! | TTTTGTACCCGATCCATCGG+AGG | - | chr1_4:69157987-69158006 | None:intergenic | 50.0% |
| GGAAGTAGTAACAAAGCGCG+TGG | + | chr1_4:69158235-69158254 | Msa0181060:CDS | 50.0% | |
| AGTGAAAGCGAACTGTTCCG+TGG | + | chr1_4:69158550-69158569 | Msa0181060:CDS | 50.0% | |
| CAACACAACACCGATGTCCA+CGG | - | chr1_4:69158570-69158589 | None:intergenic | 50.0% | |
| ! | CCCTCCCTCTCCTAAGTTTT+TGG | + | chr1_4:69159399-69159418 | Msa0181060:intron | 50.0% |
| AGTGGCAATAGAGACTCCCA+TGG | + | chr1_4:69160033-69160052 | Msa0181060:intron | 50.0% | |
| GGTTGGCAAAGGTCCACAAA+GGG | - | chr1_4:69160439-69160458 | None:intergenic | 50.0% | |
| !! | GGTTGATGATGGGTTGGCAA+AGG | - | chr1_4:69160450-69160469 | None:intergenic | 50.0% |
| CCCATCATCAACCACGTTTG+AGG | + | chr1_4:69160457-69160476 | Msa0181060:intron | 50.0% | |
| GCCCCAAGTACTAGTAGGTA+GGG | + | chr1_4:69160485-69160504 | Msa0181060:intron | 50.0% | |
| TTATGCAAGGCAAGGGAAGG+TGG | + | chr1_4:69160844-69160863 | Msa0181060:intron | 50.0% | |
| !! | GAAGTTGCAAGCACTGGTTC+GGG | + | chr1_4:69161625-69161644 | Msa0181060:intron | 50.0% |
| !! | AAGTTGCAAGCACTGGTTCG+GGG | + | chr1_4:69161626-69161645 | Msa0181060:intron | 50.0% |
| GCTCAGGCGTATGCAAACAT+TGG | + | chr1_4:69161679-69161698 | Msa0181060:intron | 50.0% | |
| GAGTCAGAGAAACCACGGTT+TGG | + | chr1_4:69162477-69162496 | Msa0181060:CDS | 50.0% | |
| ! | AACCACGGTTTGGCTCCAAT+TGG | + | chr1_4:69162487-69162506 | Msa0181060:CDS | 50.0% |
| AACCAATTGGAGCCAAACCG+TGG | - | chr1_4:69162492-69162511 | None:intergenic | 50.0% | |
| CGGAGTTCTCTTGCATCCAA+TGG | - | chr1_4:69162518-69162537 | None:intergenic | 50.0% | |
| ATCTGTTGGTACGAAGGAGC+TGG | - | chr1_4:69163428-69163447 | None:intergenic | 50.0% | |
| TGCCCTTGTATTTGCGCGTG+GGG | + | chr1_4:69157703-69157722 | Msa0181060:five_prime_UTR | 55.0% | |
| CAACCCCACGCGCAAATACA+AGG | - | chr1_4:69157709-69157728 | None:intergenic | 55.0% | |
| TGCGCGTGGGGTTGAAACTT+TGG | + | chr1_4:69157715-69157734 | Msa0181060:five_prime_UTR | 55.0% | |
| ! | GGTTTTCTCCGGCGACTCTT+TGG | + | chr1_4:69157941-69157960 | Msa0181060:CDS | 55.0% |
| ! | TTTTGGCGCCAAAGAGTCGC+CGG | - | chr1_4:69157952-69157971 | None:intergenic | 55.0% |
| AAACCGGGTTCATCCTCCGA+TGG | + | chr1_4:69157971-69157990 | Msa0181060:CDS | 55.0% | |
| GATCCATCGGAGGATGAACC+CGG | - | chr1_4:69157977-69157996 | None:intergenic | 55.0% | |
| GGGTTCATCCTCCGATGGAT+CGG | + | chr1_4:69157976-69157995 | Msa0181060:CDS | 55.0% | |
| GGTTCATCCTCCGATGGATC+GGG | + | chr1_4:69157977-69157996 | Msa0181060:CDS | 55.0% | |
| AATTGGTTGAAGGCGGAGGG+TGG | - | chr1_4:69158079-69158098 | None:intergenic | 55.0% | |
| !! | GTTGCGTTCTAAGGGAGTGG+AGG | - | chr1_4:69158107-69158126 | None:intergenic | 55.0% |
| ACATGCAATCGCCGTTGCTG+CGG | + | chr1_4:69158129-69158148 | Msa0181060:CDS | 55.0% | |
| GCGAACTGTTCCGTGGACAT+CGG | + | chr1_4:69158557-69158576 | Msa0181060:CDS | 55.0% | |
| !! | CGTGGACATCGGTGTTGTGT+TGG | + | chr1_4:69158568-69158587 | Msa0181060:CDS | 55.0% |
| AGAGACTCCCATGGCTAAGG+TGG | + | chr1_4:69160042-69160061 | Msa0181060:intron | 55.0% | |
| ! | GGGTTGGCAAAGGTCCACAA+AGG | - | chr1_4:69160440-69160459 | None:intergenic | 55.0% |
| TGGGGCCATTACCTCAAACG+TGG | - | chr1_4:69160471-69160490 | None:intergenic | 55.0% | |
| GGCCCCAAGTACTAGTAGGT+AGG | + | chr1_4:69160484-69160503 | Msa0181060:intron | 55.0% | |
| CGGTGGATCTTCCATCCTCA+AGG | + | chr1_4:69162161-69162180 | Msa0181060:CDS | 55.0% | |
| GAGTCGCCGGAGAAAACCCA+TGG | - | chr1_4:69157939-69157958 | None:intergenic | 60.0% | |
| TGCTGCTGTTGCCGCAGCAA+CGG | - | chr1_4:69158143-69158162 | None:intergenic | 60.0% | |
| GGCATGTGCTGCAGCTAGAG+CGG | - | chr1_4:69158176-69158195 | None:intergenic | 60.0% | |
| GTGGTCAGGCTCACAAGCAG+TGG | + | chr1_4:69158205-69158224 | Msa0181060:CDS | 60.0% | |
| ! | AGCGCGTGGATTACGGTTGC+CGG | + | chr1_4:69158249-69158268 | Msa0181060:CDS | 60.0% |
| TTAACGGCGGCGATCTCCTC+CGG | - | chr1_4:69158271-69158290 | None:intergenic | 60.0% | |
| TGGTTGAAGGCGGAGGGTGG+TGG | - | chr1_4:69158076-69158095 | None:intergenic | 65.0% | |
| GGCAACAGCAGCAGTCGCTG+AGG | + | chr1_4:69158150-69158169 | Msa0181060:CDS | 65.0% | |
| TGCAGCACATGCCGCTGCTG+AGG | + | chr1_4:69158183-69158202 | Msa0181060:CDS | 65.0% | |
| AGCACATGCCGCTGCTGAGG+TGG | + | chr1_4:69158186-69158205 | Msa0181060:CDS | 65.0% | |
| ATGCCGCTGCTGAGGTGGTC+AGG | + | chr1_4:69158191-69158210 | Msa0181060:CDS | 65.0% | |
| GAGCCTGACCACCTCAGCAG+CGG | - | chr1_4:69158197-69158216 | None:intergenic | 65.0% | |
| CAGGCTCACAAGCAGTGGCG+TGG | + | chr1_4:69158210-69158229 | Msa0181060:CDS | 65.0% | |
| GCTCACAAGCAGTGGCGTGG+CGG | + | chr1_4:69158213-69158232 | Msa0181060:CDS | 65.0% | |
| CTCACAAGCAGTGGCGTGGC+GGG | + | chr1_4:69158214-69158233 | Msa0181060:CDS | 65.0% | |
| ! | GCGTGGATTACGGTTGCCGG+AGG | + | chr1_4:69158252-69158271 | Msa0181060:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 69157631 | 69163457 | 69157631 | ID=Msa0181060;Name=Msa0181060 |
| chr1_4 | mRNA | 69157631 | 69163457 | 69157631 | ID=Msa0181060-mRNA-1;Parent=Msa0181060;Name=Msa0181060-mRNA-1;_AED=0.20;_eAED=0.20;_QI=307|0.4|0.5|0.83|0.6|0.83|6|348|450 |
| chr1_4 | exon | 69157631 | 69158318 | 69157631 | ID=Msa0181060-mRNA-1:exon:22954;Parent=Msa0181060-mRNA-1 |
| chr1_4 | exon | 69158545 | 69158603 | 69158545 | ID=Msa0181060-mRNA-1:exon:22955;Parent=Msa0181060-mRNA-1 |
| chr1_4 | exon | 69160543 | 69160642 | 69160543 | ID=Msa0181060-mRNA-1:exon:22956;Parent=Msa0181060-mRNA-1 |
| chr1_4 | exon | 69161713 | 69161790 | 69161713 | ID=Msa0181060-mRNA-1:exon:22957;Parent=Msa0181060-mRNA-1 |
| chr1_4 | exon | 69162114 | 69162182 | 69162114 | ID=Msa0181060-mRNA-1:exon:22958;Parent=Msa0181060-mRNA-1 |
| chr1_4 | exon | 69162444 | 69163457 | 69162444 | ID=Msa0181060-mRNA-1:exon:22959;Parent=Msa0181060-mRNA-1 |
| chr1_4 | five_prime_UTR | 69157631 | 69157937 | 69157631 | ID=Msa0181060-mRNA-1:five_prime_utr;Parent=Msa0181060-mRNA-1 |
| chr1_4 | CDS | 69157938 | 69158318 | 69157938 | ID=Msa0181060-mRNA-1:cds;Parent=Msa0181060-mRNA-1 |
| chr1_4 | CDS | 69158545 | 69158603 | 69158545 | ID=Msa0181060-mRNA-1:cds;Parent=Msa0181060-mRNA-1 |
| chr1_4 | CDS | 69160543 | 69160642 | 69160543 | ID=Msa0181060-mRNA-1:cds;Parent=Msa0181060-mRNA-1 |
| chr1_4 | CDS | 69161713 | 69161790 | 69161713 | ID=Msa0181060-mRNA-1:cds;Parent=Msa0181060-mRNA-1 |
| chr1_4 | CDS | 69162114 | 69162182 | 69162114 | ID=Msa0181060-mRNA-1:cds;Parent=Msa0181060-mRNA-1 |
| chr1_4 | CDS | 69162444 | 69163109 | 69162444 | ID=Msa0181060-mRNA-1:cds;Parent=Msa0181060-mRNA-1 |
| chr1_4 | three_prime_UTR | 69163110 | 69163457 | 69163110 | ID=Msa0181060-mRNA-1:three_prime_utr;Parent=Msa0181060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
