Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040170 | sp|Q8W4K5|VAB_ARATH | 55.804 | 491 | 135 | 16 | 10 | 425 | 7 | 490 | 8.89e-115 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040170 | Msa0180480 | 0.867290 | 1.526413e-65 | -8.615850e-47 |
| Msa0040170 | Msa0258960 | 0.801681 | 8.027535e-49 | -8.615850e-47 |
| Msa0040170 | Msa0384130 | 0.803750 | 3.003136e-49 | -8.615850e-47 |
| Msa0040170 | Msa0478750 | 0.817682 | 2.904964e-52 | -8.615850e-47 |
| Msa0040170 | Msa0522830 | 0.813496 | 2.485719e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040170 | MtrunA17_Chr1g0204831 | 89.760 | 459 | 12 | 5 | 1 | 427 | 1 | 456 | 0.0 | 810 |
| Msa0040170 | MtrunA17_Chr1g0166381 | 62.526 | 483 | 109 | 11 | 1 | 426 | 1 | 468 | 8.38e-142 | 413 |
| Msa0040170 | MtrunA17_Chr7g0260211 | 54.604 | 467 | 158 | 5 | 10 | 424 | 8 | 472 | 5.82e-127 | 375 |
| Msa0040170 | MtrunA17_Chr1g0185201 | 57.451 | 463 | 137 | 9 | 20 | 425 | 24 | 483 | 3.80e-125 | 371 |
| Msa0040170 | MtrunA17_Chr3g0140081 | 39.356 | 404 | 200 | 9 | 29 | 420 | 1 | 371 | 2.55e-59 | 198 |
| Msa0040170 | MtrunA17_Chr4g0019631 | 49.789 | 237 | 106 | 5 | 151 | 376 | 63 | 297 | 3.50e-47 | 164 |
| Msa0040170 | MtrunA17_Chr5g0399391 | 34.230 | 409 | 176 | 13 | 22 | 415 | 48 | 378 | 1.42e-43 | 157 |
| Msa0040170 | MtrunA17_Chr4g0073191 | 34.201 | 269 | 159 | 7 | 153 | 418 | 146 | 399 | 3.25e-16 | 80.1 |
| Msa0040170 | MtrunA17_Chr7g0260231 | 61.538 | 39 | 15 | 0 | 386 | 424 | 9 | 47 | 1.25e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040170 | AT3G22810.1 | 62.162 | 481 | 119 | 14 | 1 | 427 | 1 | 472 | 4.16e-168 | 480 |
| Msa0040170 | AT4G14740.1 | 58.542 | 480 | 137 | 10 | 1 | 424 | 1 | 474 | 2.63e-159 | 458 |
| Msa0040170 | AT4G14740.2 | 58.542 | 480 | 137 | 10 | 1 | 424 | 1 | 474 | 2.63e-159 | 458 |
| Msa0040170 | AT5G43870.1 | 58.022 | 455 | 141 | 8 | 7 | 424 | 11 | 452 | 6.78e-141 | 410 |
| Msa0040170 | AT3G22810.2 | 61.220 | 410 | 96 | 14 | 1 | 356 | 1 | 401 | 1.70e-125 | 370 |
| Msa0040170 | AT3G22810.3 | 68.874 | 302 | 68 | 3 | 152 | 427 | 33 | 334 | 1.17e-122 | 359 |
| Msa0040170 | AT4G14740.4 | 57.385 | 413 | 114 | 10 | 1 | 357 | 1 | 407 | 1.24e-120 | 357 |
| Msa0040170 | AT4G14740.3 | 68.227 | 299 | 69 | 2 | 152 | 424 | 37 | 335 | 6.10e-117 | 345 |
| Msa0040170 | AT3G63300.1 | 55.804 | 491 | 135 | 16 | 10 | 425 | 7 | 490 | 9.04e-116 | 348 |
| Msa0040170 | AT5G43870.2 | 56.701 | 388 | 118 | 8 | 7 | 357 | 11 | 385 | 2.35e-102 | 310 |
| Msa0040170 | AT3G63300.2 | 63.158 | 304 | 87 | 5 | 145 | 425 | 31 | 332 | 1.27e-79 | 249 |
| Msa0040170 | AT4G17350.1 | 36.170 | 423 | 181 | 12 | 10 | 415 | 33 | 383 | 2.19e-48 | 170 |
| Msa0040170 | AT5G47440.1 | 34.390 | 410 | 192 | 10 | 22 | 419 | 43 | 387 | 1.23e-44 | 160 |
| Msa0040170 | AT4G32780.1 | 39.152 | 401 | 200 | 9 | 21 | 416 | 34 | 395 | 8.81e-43 | 155 |
| Msa0040170 | AT4G32780.2 | 39.152 | 401 | 200 | 9 | 21 | 416 | 53 | 414 | 1.08e-42 | 155 |
| Msa0040170 | AT4G16670.1 | 31.863 | 408 | 195 | 8 | 28 | 415 | 64 | 408 | 5.07e-40 | 148 |
| Msa0040170 | AT4G16670.2 | 33.524 | 349 | 150 | 7 | 28 | 356 | 64 | 350 | 2.69e-32 | 125 |
| Msa0040170 | AT4G16670.3 | 33.233 | 331 | 139 | 7 | 28 | 338 | 64 | 332 | 5.49e-27 | 111 |
| Msa0040170 | AT5G57770.1 | 40.092 | 217 | 123 | 4 | 153 | 365 | 128 | 341 | 1.97e-20 | 93.2 |
| Msa0040170 | AT5G57770.2 | 39.706 | 204 | 117 | 3 | 153 | 353 | 128 | 328 | 2.32e-19 | 89.4 |
| Msa0040170 | AT4G32780.3 | 36.800 | 250 | 117 | 6 | 21 | 267 | 53 | 264 | 1.92e-13 | 70.9 |
Find 161 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATATGCATTGGGGTATT+TGG | 0.133905 | 1_1:-70214792 | Msa0040170:three_prime_UTR |
| ATTGGTGCTTGTGGTGTTTC+TGG | 0.157684 | 1_1:+70218281 | None:intergenic |
| ATTAATACAATATAAAATTA+TGG | 0.203256 | 1_1:-70214520 | Msa0040170:three_prime_UTR |
| ATCTGTGTTGTTTGCACATT+TGG | 0.204670 | 1_1:-70214590 | Msa0040170:three_prime_UTR |
| GCAGCCACCGCCGCTTCGTC+TGG | 0.211127 | 1_1:-70216651 | Msa0040170:CDS |
| ATAAAGCTCAAACCCATTTC+TGG | 0.227451 | 1_1:-70218340 | Msa0040170:CDS |
| TCAGAGGAAGCAAAGGAAAA+TGG | 0.240625 | 1_1:+70218104 | None:intergenic |
| TCTTCTATGGTGGTGTTTAT+AGG | 0.252498 | 1_1:+70218179 | None:intergenic |
| TGTAAGCTTAAATAGTTATC+TGG | 0.254925 | 1_1:-70216829 | Msa0040170:CDS |
| GCTCACCGCTGAAGCTACTA+TGG | 0.269009 | 1_1:+70216162 | None:intergenic |
| AGCAAAGGAAAATGGGTTTA+AGG | 0.281335 | 1_1:+70218112 | None:intergenic |
| TCTGTGTCTCCAAGAACTTC+AGG | 0.287973 | 1_1:-70217908 | Msa0040170:CDS |
| AGAAGAAGAGGAGAGAGTTT+TGG | 0.301084 | 1_1:+70218214 | None:intergenic |
| TCTATTTCTGTTGTTCTTCT+CGG | 0.313221 | 1_1:+70214998 | None:intergenic |
| ATTCCTGTGGAGAGAAGTTT+GGG | 0.323759 | 1_1:-70216215 | Msa0040170:CDS |
| ACAGGACAACTATCTGTTAA+AGG | 0.327867 | 1_1:+70217863 | None:intergenic |
| GGATAGAAAGGAGAAGAAAA+AGG | 0.331067 | 1_1:-70216754 | Msa0040170:CDS |
| TGGAGTTTCTCTCACGTTCA+TGG | 0.340417 | 1_1:-70218259 | Msa0040170:CDS |
| CAATATAAAATTATGGGCTT+TGG | 0.341496 | 1_1:-70214513 | Msa0040170:three_prime_UTR |
| TGAAACCACTCAAATGATAA+TGG | 0.341964 | 1_1:-70218084 | Msa0040170:CDS |
| CGAGGGCATTGAAGGAAGTT+TGG | 0.344004 | 1_1:-70216253 | Msa0040170:CDS |
| AAATTATGGGCTTTGGCTCC+TGG | 0.344786 | 1_1:-70214506 | Msa0040170:three_prime_UTR |
| AATGGGGAAAGAATCATATT+AGG | 0.349637 | 1_1:-70214651 | Msa0040170:three_prime_UTR |
| GAGAGTCTCCCTGAAGTTCT+TGG | 0.351457 | 1_1:+70217899 | None:intergenic |
| TTAATACAATATAAAATTAT+GGG | 0.359321 | 1_1:-70214519 | Msa0040170:three_prime_UTR |
| AGTTGGGGTTACTTTAATCT+TGG | 0.360475 | 1_1:-70214816 | Msa0040170:three_prime_UTR |
| GATTCCTGTGGAGAGAAGTT+TGG | 0.362060 | 1_1:-70216216 | Msa0040170:CDS |
| AGGCAAAAGGTATGCCAGTT+GGG | 0.368488 | 1_1:-70214832 | Msa0040170:three_prime_UTR |
| GGTGGTGTTTATAGGAGGTT+TGG | 0.369428 | 1_1:+70218187 | None:intergenic |
| ATCTTGGGAAAATATGCATT+GGG | 0.372738 | 1_1:-70214800 | Msa0040170:three_prime_UTR |
| AGCGAATAGTGACTCGGCTT+TGG | 0.378325 | 1_1:-70216607 | Msa0040170:CDS |
| CAGAGGAAGCAAAGGAAAAT+GGG | 0.383629 | 1_1:+70218105 | None:intergenic |
| GTGGGTCGGGTCTCCAGAAA+TGG | 0.392955 | 1_1:+70218327 | None:intergenic |
| GTTGAGACTGCAGAGGCGTT+GGG | 0.398723 | 1_1:-70216552 | Msa0040170:CDS |
| GGCAGACCACCTGGTGGTGG+TGG | 0.399889 | 1_1:-70216804 | Msa0040170:CDS |
| ACCGCCGCTTCGTCTGGGTC+TGG | 0.406896 | 1_1:-70216645 | Msa0040170:CDS |
| AGAGGAGGAGGTTTCTTCTT+CGG | 0.412143 | 1_1:+70218139 | None:intergenic |
| TTAACTGCTGCTGCTGCAAC+AGG | 0.412989 | 1_1:-70216456 | Msa0040170:intron |
| CAGATACCGCAGCATGAACC+TGG | 0.413528 | 1_1:+70216709 | None:intergenic |
| GTTGGGGTTACTTTAATCTT+GGG | 0.415960 | 1_1:-70214815 | Msa0040170:three_prime_UTR |
| AGACCACCTGGTGGTGGTGG+TGG | 0.418708 | 1_1:-70216801 | Msa0040170:CDS |
| AGCATGAACCTGGGCATTGT+GGG | 0.420669 | 1_1:+70216719 | None:intergenic |
| TTGGACGGGACGCCATTTGC+TGG | 0.425146 | 1_1:-70215150 | Msa0040170:CDS |
| ATGAAGAGTAGGCACGTTGC+TGG | 0.426396 | 1_1:-70215382 | Msa0040170:CDS |
| TTTGTGCAGGTGATCTTCAC+TGG | 0.428772 | 1_1:-70215686 | Msa0040170:intron |
| GCGAGTGGGTGAGGAGGAGT+GGG | 0.435239 | 1_1:+70218419 | None:intergenic |
| ATTGAAAGCGAGGGCATTGA+AGG | 0.436129 | 1_1:-70216261 | Msa0040170:CDS |
| CAGCCACCGCCGCTTCGTCT+GGG | 0.436691 | 1_1:-70216650 | Msa0040170:CDS |
| GGCTTCTGCAGCAACGTTGG+TGG | 0.436826 | 1_1:-70216586 | Msa0040170:CDS |
| ATATATAAACAAAATGAATC+AGG | 0.440520 | 1_1:-70215649 | Msa0040170:intron |
| AATTATGGGCTTTGGCTCCT+GGG | 0.444167 | 1_1:-70214505 | Msa0040170:three_prime_UTR |
| GGTTTCTTCTTCGGTTTCTC+CGG | 0.446422 | 1_1:+70218148 | None:intergenic |
| GGTGGCAGACCACCTGGTGG+TGG | 0.447164 | 1_1:-70216807 | Msa0040170:CDS |
| AGCGAGTGGGTGAGGAGGAG+TGG | 0.447389 | 1_1:+70218418 | None:intergenic |
| AGAGCGAGAGCGAGTGGGTG+AGG | 0.450225 | 1_1:+70218410 | None:intergenic |
| TGTACCTGAAGATAATTTCT+CGG | 0.455360 | 1_1:-70216138 | Msa0040170:CDS |
| ATGGAAGAGTGAAGTGGGTC+GGG | 0.467808 | 1_1:+70218314 | None:intergenic |
| TGAAAAGAACAATACAACTA+TGG | 0.468165 | 1_1:+70214733 | None:intergenic |
| GGTGAGAATCGTCGCTACTT+TGG | 0.470784 | 1_1:-70215122 | Msa0040170:CDS |
| AAGATTAAAGTAACCCCAAC+TGG | 0.475311 | 1_1:+70214818 | None:intergenic |
| AATCTTGGGAAAATATGCAT+TGG | 0.476498 | 1_1:-70214801 | Msa0040170:three_prime_UTR |
| GACGGTTGGAAGATGGCTTA+AGG | 0.476572 | 1_1:-70216775 | Msa0040170:CDS |
| GCCGTGAATGTTAGATCTGC+TGG | 0.478252 | 1_1:-70216492 | Msa0040170:CDS |
| TCTCACCGCCTTCCAGCAAA+TGG | 0.482869 | 1_1:+70215138 | None:intergenic |
| CTGTGTCTCCAAGAACTTCA+GGG | 0.484560 | 1_1:-70217907 | Msa0040170:CDS |
| CAAAGATATGCCCGCTTGGA+CGG | 0.486154 | 1_1:-70215165 | Msa0040170:CDS |
| AGACCCAGACGAAGCGGCGG+TGG | 0.489654 | 1_1:+70216647 | None:intergenic |
| TTTGGCTTCTGCAGCAACGT+TGG | 0.493716 | 1_1:-70216589 | Msa0040170:CDS |
| AAAATGAGTATCTTGGACTA+GGG | 0.498822 | 1_1:-70214687 | Msa0040170:three_prime_UTR |
| AAGATGGCTTAAGGATAGAA+AGG | 0.499120 | 1_1:-70216766 | Msa0040170:CDS |
| TGTTGAGACTGCAGAGGCGT+TGG | 0.500590 | 1_1:-70216553 | Msa0040170:CDS |
| TCTTCCCTGCAGTACGGCCG+TGG | 0.502954 | 1_1:-70216864 | Msa0040170:intron |
| GTTTAAGGAAACAGAGGAGG+AGG | 0.502979 | 1_1:+70218127 | None:intergenic |
| CAGCATGAACCTGGGCATTG+TGG | 0.503265 | 1_1:+70216718 | None:intergenic |
| AAAGATATGCCCGCTTGGAC+GGG | 0.506528 | 1_1:-70215164 | Msa0040170:CDS |
| AGGTTTGGAAGAAGAAGAAG+AGG | 0.509796 | 1_1:+70218202 | None:intergenic |
| TTCTGCAGCAACGTTGGTGG+CGG | 0.514743 | 1_1:-70216583 | Msa0040170:CDS |
| GTTGTTCTTCTCGGCTGCAA+TGG | 0.515717 | 1_1:+70215007 | None:intergenic |
| TTGAGCTCCTGTTCTGAGGG+GGG | 0.518041 | 1_1:-70214973 | Msa0040170:exon |
| GTGGTAAGACGGTTGGAAGA+TGG | 0.518581 | 1_1:-70216782 | Msa0040170:CDS |
| GGTGGTGGTGGTAAGACGGT+TGG | 0.518939 | 1_1:-70216789 | Msa0040170:CDS |
| TTTGAGCTCCTGTTCTGAGG+GGG | 0.519648 | 1_1:-70214974 | Msa0040170:exon |
| GCTTCTGGTGGTAATGGTAA+TGG | 0.519867 | 1_1:-70216191 | Msa0040170:CDS |
| TCTCGGCTGCAATGGAAAGC+AGG | 0.520517 | 1_1:+70215015 | None:intergenic |
| GTACCTGAAGATAATTTCTC+GGG | 0.522129 | 1_1:-70216137 | Msa0040170:intron |
| TATCTGGGTGGCAGACCACC+TGG | 0.524730 | 1_1:-70216813 | Msa0040170:CDS |
| ATACAACTATGGTTCACATT+GGG | 0.526699 | 1_1:+70214744 | None:intergenic |
| GTACCCGAGAAATTATCTTC+AGG | 0.529680 | 1_1:+70216134 | None:intergenic |
| CGGAACATGGAAGAGTGAAG+TGG | 0.533073 | 1_1:+70218308 | None:intergenic |
| GGGAGAAATTTAGGCAATGG+GGG | 0.535550 | 1_1:-70214953 | Msa0040170:three_prime_UTR |
| ACGGGACGCCATTTGCTGGA+AGG | 0.535811 | 1_1:-70215146 | Msa0040170:CDS |
| TCTATGGTGGTGTTTATAGG+AGG | 0.537077 | 1_1:+70218182 | None:intergenic |
| TTACACCGCCGTTGTTTCCA+CGG | 0.537355 | 1_1:+70216847 | None:intergenic |
| TGTTTCTGGTGGACGGAACA+TGG | 0.537758 | 1_1:+70218295 | None:intergenic |
| GTAAGCTTAAATAGTTATCT+GGG | 0.538154 | 1_1:-70216828 | Msa0040170:CDS |
| ACGGGAACACCTTGCTGCGG+TGG | 0.539252 | 1_1:-70216523 | Msa0040170:CDS |
| TGAAGAGTAGGCACGTTGCT+GGG | 0.541029 | 1_1:-70215381 | Msa0040170:CDS |
| AAGGCAAAAGGTATGCCAGT+TGG | 0.541356 | 1_1:-70214833 | Msa0040170:three_prime_UTR |
| AATACAACTATGGTTCACAT+TGG | 0.542153 | 1_1:+70214743 | None:intergenic |
| TGGGTCGGGTCTCCAGAAAT+GGG | 0.543717 | 1_1:+70218328 | None:intergenic |
| AGCAAGGGCCCACAATGCCC+AGG | 0.543868 | 1_1:-70216727 | Msa0040170:CDS |
| AAATGGCGTCCCGTCCAAGC+GGG | 0.545545 | 1_1:+70215155 | None:intergenic |
| GCGAGAGCGAGTGGGTGAGG+AGG | 0.552975 | 1_1:+70218413 | None:intergenic |
| CTTGTGGTGTTTCTGGTGGA+CGG | 0.553644 | 1_1:+70218288 | None:intergenic |
| GGGGAAAGAATCATATTAGG+AGG | 0.554020 | 1_1:-70214648 | Msa0040170:three_prime_UTR |
| GCGTTCCATTATCATTTGAG+TGG | 0.554237 | 1_1:+70218079 | None:intergenic |
| AGAAACACCACAAGCACCAA+TGG | 0.558033 | 1_1:-70218279 | Msa0040170:CDS |
| AGAGTATGATGTGTGGACTC+AGG | 0.560327 | 1_1:-70215048 | Msa0040170:CDS |
| GTGTTGTTGTAGCTTTGCGT+GGG | 0.562118 | 1_1:-70216292 | Msa0040170:intron |
| AATGTGCAAACAACACAGAT+AGG | 0.562501 | 1_1:+70214593 | None:intergenic |
| TGATCAAAGATATGCCCGCT+TGG | 0.565703 | 1_1:-70215169 | Msa0040170:CDS |
| CATGGAAGAGTGAAGTGGGT+CGG | 0.569299 | 1_1:+70218313 | None:intergenic |
| AGAAACTCCATTGGTGCTTG+TGG | 0.572480 | 1_1:+70218272 | None:intergenic |
| TGCAGCAATTGCAGCTACTG+CGG | 0.572535 | 1_1:+70216671 | None:intergenic |
| TTGAGACTGCAGAGGCGTTG+GGG | 0.573228 | 1_1:-70216551 | Msa0040170:CDS |
| AGTGGTTTCAGAGGAAGCAA+AGG | 0.575283 | 1_1:+70218097 | None:intergenic |
| TCCTGTGGAGAGAAGTTTGG+GGG | 0.582754 | 1_1:-70216213 | Msa0040170:CDS |
| GGGAAAGAATCATATTAGGA+GGG | 0.583654 | 1_1:-70214647 | Msa0040170:three_prime_UTR |
| GGGGAGAAATTTAGGCAATG+GGG | 0.590118 | 1_1:-70214954 | Msa0040170:three_prime_UTR |
| ACCAGCAGATCTAACATTCA+CGG | 0.590450 | 1_1:+70216491 | None:intergenic |
| GGTGCTTGTGGTGTTTCTGG+TGG | 0.594073 | 1_1:+70218284 | None:intergenic |
| GGCAAAAGGTATGCCAGTTG+GGG | 0.595796 | 1_1:-70214831 | Msa0040170:three_prime_UTR |
| GGGCTGCAACATTGAAAGCG+AGG | 0.600321 | 1_1:-70216271 | Msa0040170:CDS |
| TGTGTTGTTGTAGCTTTGCG+TGG | 0.600647 | 1_1:-70216293 | Msa0040170:intron |
| TCCAGACCCAGACGAAGCGG+CGG | 0.601265 | 1_1:+70216644 | None:intergenic |
| TATCATTTGAGTGGTTTCAG+AGG | 0.602274 | 1_1:+70218088 | None:intergenic |
| AGCAATTGCAGCTACTGCGG+CGG | 0.603464 | 1_1:+70216674 | None:intergenic |
| TGAGACTGCAGAGGCGTTGG+GGG | 0.605085 | 1_1:-70216550 | Msa0040170:CDS |
| GAGTATGATGTGTGGACTCA+GGG | 0.611655 | 1_1:-70215047 | Msa0040170:CDS |
| GGTTCATGCTGCGGTATCTG+TGG | 0.615364 | 1_1:-70216706 | Msa0040170:CDS |
| GAGAGAGAGCGAGAGCGAGT+GGG | 0.617593 | 1_1:+70218405 | None:intergenic |
| CTCACCGCTGAAGCTACTAT+GGG | 0.618283 | 1_1:+70216163 | None:intergenic |
| ACCATAGAAGAAAACATCAC+CGG | 0.620032 | 1_1:-70218167 | Msa0040170:CDS |
| CAGTACGGCCGTGGAAACAA+CGG | 0.622108 | 1_1:-70216855 | Msa0040170:CDS |
| TGGGTTTAAGGAAACAGAGG+AGG | 0.624077 | 1_1:+70218124 | None:intergenic |
| AAATGGGTTTAAGGAAACAG+AGG | 0.625133 | 1_1:+70218121 | None:intergenic |
| GAACGTGAGAGAAACTCCAT+TGG | 0.627617 | 1_1:+70218263 | None:intergenic |
| GGCTGCAACATTGAAAGCGA+GGG | 0.631800 | 1_1:-70216270 | Msa0040170:CDS |
| CAATGCCCAGGTTCATGCTG+CGG | 0.633356 | 1_1:-70216715 | Msa0040170:CDS |
| GGAACATGGAAGAGTGAAGT+GGG | 0.633559 | 1_1:+70218309 | None:intergenic |
| TTTGATCAATGATAAAGGGG+GGG | 0.639470 | 1_1:-70214872 | Msa0040170:three_prime_UTR |
| GGGAGACTCTCACACAGTAG+TGG | 0.643580 | 1_1:-70217887 | Msa0040170:CDS |
| GGACGCCATTTGCTGGAAGG+CGG | 0.651970 | 1_1:-70215143 | Msa0040170:CDS |
| GGAACGGGAACACCTTGCTG+CGG | 0.652259 | 1_1:-70216526 | Msa0040170:CDS |
| TTCCTGTGGAGAGAAGTTTG+GGG | 0.655019 | 1_1:-70216214 | Msa0040170:CDS |
| CGGAGTTAACCACCGCAGCA+AGG | 0.656849 | 1_1:+70216514 | None:intergenic |
| GTCTGGGTCTGGAAAAGACG+AGG | 0.656862 | 1_1:-70216634 | Msa0040170:CDS |
| CAAATGGCGTCCCGTCCAAG+CGG | 0.661319 | 1_1:+70215154 | None:intergenic |
| AGATACCGCAGCATGAACCT+GGG | 0.662936 | 1_1:+70216710 | None:intergenic |
| AGTTCCCATAGTAGCTTCAG+CGG | 0.663806 | 1_1:-70216167 | Msa0040170:CDS |
| TCTTGGGAAAATATGCATTG+GGG | 0.670067 | 1_1:-70214799 | Msa0040170:three_prime_UTR |
| CTGGGTGGCAGACCACCTGG+TGG | 0.677295 | 1_1:-70216810 | Msa0040170:CDS |
| TATTGCAGCAGTGATTCCTG+TGG | 0.684636 | 1_1:-70216228 | Msa0040170:CDS |
| AGCTTAAATAGTTATCTGGG+TGG | 0.684648 | 1_1:-70216825 | Msa0040170:CDS |
| GGAGAAAGCGAATAGTGACT+CGG | 0.696370 | 1_1:-70216613 | Msa0040170:CDS |
| TGTTGTTGTAGCTTTGCGTG+GGG | 0.698828 | 1_1:-70216291 | Msa0040170:intron |
| TCAGTGTGTTGAGACTGCAG+AGG | 0.701979 | 1_1:-70216559 | Msa0040170:CDS |
| ATCAAAGAGAGTATGATGTG+TGG | 0.717389 | 1_1:-70215055 | Msa0040170:CDS |
| GGATTGAAAACATTATTGCG+TGG | 0.721694 | 1_1:-70215101 | Msa0040170:CDS |
| TACGGCCGTGGAAACAACGG+CGG | 0.736881 | 1_1:-70216852 | Msa0040170:CDS |
| AGCAGATCTAACATTCACGG+CGG | 0.776495 | 1_1:+70216494 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAAAAATAAAA+AGG | + | chr1_1:70215024-70215043 | None:intergenic | 0.0% |
| !! | AAATTAATAATTAATTTAAT+GGG | + | chr1_1:70215672-70215691 | None:intergenic | 0.0% |
| !! | TAAATTAATAATTAATTTAA+TGG | + | chr1_1:70215673-70215692 | None:intergenic | 0.0% |
| !!! | TTTTTATTTTTTTTCTTCTT+CGG | - | chr1_1:70215031-70215050 | Msa0040170:CDS | 10.0% |
| !!! | AACTTTACTTTTTTTATTTT+AGG | - | chr1_1:70215237-70215256 | Msa0040170:intron | 10.0% |
| !!! | ACTTTACTTTTTTTATTTTA+GGG | - | chr1_1:70215238-70215257 | Msa0040170:intron | 10.0% |
| !!! | TTTTTTTTTGTTGTAATAAA+TGG | + | chr1_1:70217240-70217259 | None:intergenic | 10.0% |
| !!! | TAATTTTTGTTTTGTTTTGT+AGG | - | chr1_1:70215085-70215104 | Msa0040170:CDS | 15.0% |
| !! | TTTAACATTATAATATTCCA+AGG | - | chr1_1:70215362-70215381 | Msa0040170:CDS | 15.0% |
| !! | TATTATAATCCCTATATTTA+AGG | + | chr1_1:70215390-70215409 | None:intergenic | 15.0% |
| !! | TTAAATATAGGGATTATAAT+AGG | - | chr1_1:70215389-70215408 | Msa0040170:CDS | 15.0% |
| !!! | ATTTTTATGATTTTATTCCT+AGG | - | chr1_1:70215550-70215569 | Msa0040170:intron | 15.0% |
| !! | TGTTAATTAGAAATTTACAT+TGG | + | chr1_1:70215627-70215646 | None:intergenic | 15.0% |
| !! | TTTGTTCAAATTAATTACAA+AGG | - | chr1_1:70215997-70216016 | Msa0040170:intron | 15.0% |
| !!! | AGGAATTTTTTATTGAATAA+TGG | - | chr1_1:70216074-70216093 | Msa0040170:intron | 15.0% |
| !! | ATGATAAAAACAAAATTTCA+AGG | - | chr1_1:70216609-70216628 | Msa0040170:CDS | 15.0% |
| !!! | ATGAAATATTTTCATGTAAA+TGG | - | chr1_1:70217006-70217025 | Msa0040170:intron | 15.0% |
| !! | ATATATAAACAAAATGAATC+AGG | - | chr1_1:70217375-70217394 | Msa0040170:intron | 15.0% |
| !! | TAATTATTTAACAACAGATT+TGG | - | chr1_1:70217726-70217745 | Msa0040170:intron | 15.0% |
| !! | AGTTTACTAAATTTATTCCT+AGG | - | chr1_1:70215274-70215293 | Msa0040170:intron | 20.0% |
| !! | AATAAAGTTTCTATGAAGAT+GGG | + | chr1_1:70215435-70215454 | None:intergenic | 20.0% |
| !!! | AGTTTACTAAATTTTATTCC+CGG | + | chr1_1:70215508-70215527 | None:intergenic | 20.0% |
| !! | TAATTAGAAATTTACATTGG+AGG | + | chr1_1:70215624-70215643 | None:intergenic | 20.0% |
| !! | ACAAGTTTACTAAAAATAGT+GGG | + | chr1_1:70215759-70215778 | None:intergenic | 20.0% |
| !! | AACAAGTTTACTAAAAATAG+TGG | + | chr1_1:70215760-70215779 | None:intergenic | 20.0% |
| !!! | TGTAATTTAGGACAAATTTT+GGG | + | chr1_1:70215879-70215898 | None:intergenic | 20.0% |
| !! | TATATTTCTTATTGTGTGTT+TGG | - | chr1_1:70216973-70216992 | Msa0040170:intron | 20.0% |
| !!! | CATAATTGATTTTAGCTTTA+AGG | + | chr1_1:70217102-70217121 | None:intergenic | 20.0% |
| !! | CTTAAAGCTAAAATCAATTA+TGG | - | chr1_1:70217100-70217119 | Msa0040170:intron | 20.0% |
| !!! | ATAAAAGCACAATATTGTTA+AGG | + | chr1_1:70217421-70217440 | None:intergenic | 20.0% |
| !! | TAATCAGTCACTTAATTATT+TGG | - | chr1_1:70217458-70217477 | Msa0040170:intron | 20.0% |
| !! | AATCAGTCACTTAATTATTT+GGG | - | chr1_1:70217459-70217478 | Msa0040170:intron | 20.0% |
| !! | ATGAAAAAGTTATATGAAGT+GGG | - | chr1_1:70217518-70217537 | Msa0040170:intron | 20.0% |
| !!! | TTCACATAAAGAATTTTCAA+AGG | + | chr1_1:70217609-70217628 | None:intergenic | 20.0% |
| !! | TTTGAAAATTCTTTATGTGA+AGG | - | chr1_1:70217608-70217627 | Msa0040170:intron | 20.0% |
| !!! | ACTCTTTTTCTTTTTCTTAA+TGG | + | chr1_1:70217670-70217689 | None:intergenic | 20.0% |
| !! | CTGTAAATTCAAAACATAAA+GGG | + | chr1_1:70217820-70217839 | None:intergenic | 20.0% |
| !! | TCTGTAAATTCAAAACATAA+AGG | + | chr1_1:70217821-70217840 | None:intergenic | 20.0% |
| !!! | CTATAGATCTTTTTGATATA+TGG | - | chr1_1:70218123-70218142 | Msa0040170:CDS | 20.0% |
| !! | AAAATGAAAAATGAGTATCT+TGG | - | chr1_1:70218330-70218349 | Msa0040170:CDS | 20.0% |
| !!! | TTTTGACTACTTTTGTTTTA+AGG | + | chr1_1:70218467-70218486 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTGTTTTGTAGG+AGG | - | chr1_1:70215088-70215107 | Msa0040170:CDS | 25.0% |
| ! | ATTCCTTGGAATATAAAGAT+GGG | - | chr1_1:70215303-70215322 | Msa0040170:intron | 25.0% |
| !!! | CATCTTTTTTCTAAATACCT+TGG | + | chr1_1:70215338-70215357 | None:intergenic | 25.0% |
| ! | GAATAAAGTTTCTATGAAGA+TGG | + | chr1_1:70215436-70215455 | None:intergenic | 25.0% |
| !! | GTTTACTAAATTTTATTCCC+GGG | + | chr1_1:70215507-70215526 | None:intergenic | 25.0% |
| ! | AGTTATATTTGTAGATTCCT+AGG | + | chr1_1:70215570-70215589 | None:intergenic | 25.0% |
| !!! | CTGTAATTTAGGACAAATTT+TGG | + | chr1_1:70215880-70215899 | None:intergenic | 25.0% |
| ! | AAAATTGTACGCTGTAATTT+AGG | + | chr1_1:70215891-70215910 | None:intergenic | 25.0% |
| ! | ACGAAAAGAATAAATCATTG+TGG | + | chr1_1:70215971-70215990 | None:intergenic | 25.0% |
| !!! | TTTTGTTCTTGTTATGAACA+AGG | - | chr1_1:70216032-70216051 | Msa0040170:intron | 25.0% |
| ! | TCAATAAAAAATTCCTTCCT+TGG | + | chr1_1:70216070-70216089 | None:intergenic | 25.0% |
| ! | TGTAAGCTTAAATAGTTATC+TGG | - | chr1_1:70216195-70216214 | Msa0040170:CDS | 25.0% |
| ! | GTAAGCTTAAATAGTTATCT+GGG | - | chr1_1:70216196-70216215 | Msa0040170:CDS | 25.0% |
| !!! | CATTTTCTGAAAATGTGAAT+TGG | - | chr1_1:70216638-70216657 | Msa0040170:CDS | 25.0% |
| !! | AGTTTGTATGTTGATGTTTT+TGG | - | chr1_1:70216680-70216699 | Msa0040170:CDS | 25.0% |
| !!! | ATTGATTTTAGCTTTAAGGT+AGG | + | chr1_1:70217098-70217117 | None:intergenic | 25.0% |
| ! | AAAGCTAAAATCAATTATGG+AGG | - | chr1_1:70217103-70217122 | Msa0040170:intron | 25.0% |
| !!! | ATATTGGTTTTAGTGTTTGA+TGG | + | chr1_1:70217151-70217170 | None:intergenic | 25.0% |
| ! | TGATTCTTAAGACTTGATAT+TGG | + | chr1_1:70217167-70217186 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTAATAAATGGC+AGG | + | chr1_1:70217236-70217255 | None:intergenic | 25.0% |
| ! | ATAAGACTAGAAAATGGAAA+GGG | + | chr1_1:70217280-70217299 | None:intergenic | 25.0% |
| ! | AACATCATAAGACTAGAAAA+TGG | + | chr1_1:70217286-70217305 | None:intergenic | 25.0% |
| ! | CATGAAAAAGTTATATGAAG+TGG | - | chr1_1:70217517-70217536 | Msa0040170:intron | 25.0% |
| ! | TGAAAAAGTTATATGAAGTG+GGG | - | chr1_1:70217519-70217538 | Msa0040170:intron | 25.0% |
| !! | TTACTCTAAAAATGAAGAGT+AGG | - | chr1_1:70217631-70217650 | Msa0040170:intron | 25.0% |
| ! | TTATTTAACAACAGATTTGG+AGG | - | chr1_1:70217729-70217748 | Msa0040170:intron | 25.0% |
| ! | AATTCAAAACATAAAGGGAA+TGG | + | chr1_1:70217815-70217834 | None:intergenic | 25.0% |
| !!! | ATGTTTTGAATTTACAGATG+TGG | - | chr1_1:70217823-70217842 | Msa0040170:intron | 25.0% |
| ! | AAAAAGATCTATAGTGCTAA+GGG | + | chr1_1:70218117-70218136 | None:intergenic | 25.0% |
| !! | TAGATCTTTTTGATATATGG+TGG | - | chr1_1:70218126-70218145 | Msa0040170:CDS | 25.0% |
| !! | AGATCTTTTTGATATATGGT+GGG | - | chr1_1:70218127-70218146 | Msa0040170:CDS | 25.0% |
| ! | TGAAAAGAACAATACAACTA+TGG | + | chr1_1:70218294-70218313 | None:intergenic | 25.0% |
| !! | TGTTCTTTTCATCACTATTA+TGG | - | chr1_1:70218303-70218322 | Msa0040170:CDS | 25.0% |
| ! | CAATATAAAATTATGGGCTT+TGG | - | chr1_1:70218511-70218530 | Msa0040170:intron | 25.0% |
| AGAAGAGAATAGAAGATTGA+GGG | + | chr1_1:70214566-70214585 | None:intergenic | 30.0% | |
| TGAAACCACTCAAATGATAA+TGG | - | chr1_1:70214940-70214959 | Msa0040170:three_prime_UTR | 30.0% | |
| CATTCCTTGGAATATAAAGA+TGG | - | chr1_1:70215302-70215321 | Msa0040170:intron | 30.0% | |
| TTTCCCATCTTTATATTCCA+AGG | + | chr1_1:70215309-70215328 | None:intergenic | 30.0% | |
| AAGATGGGAAATTTATTCCA+AGG | - | chr1_1:70215318-70215337 | Msa0040170:intron | 30.0% | |
| TTCCAAGGAACCTTAAATAT+AGG | - | chr1_1:70215377-70215396 | Msa0040170:CDS | 30.0% | |
| TCCAAGGAACCTTAAATATA+GGG | - | chr1_1:70215378-70215397 | Msa0040170:CDS | 30.0% | |
| ! | AAAAGTTTTCCCAAGGAAAA+GGG | + | chr1_1:70215462-70215481 | None:intergenic | 30.0% |
| !!! | GTGTATTTGTTTTGTTTACC+TGG | - | chr1_1:70215809-70215828 | Msa0040170:intron | 30.0% |
| ! | CGATTTTCTGTTAGATTGTA+GGG | + | chr1_1:70215836-70215855 | None:intergenic | 30.0% |
| ! | ACGATTTTCTGTTAGATTGT+AGG | + | chr1_1:70215837-70215856 | None:intergenic | 30.0% |
| CTAACAGAAAATCGTCAAAT+TGG | - | chr1_1:70215842-70215861 | Msa0040170:intron | 30.0% | |
| !! | AATTTAGGACAAATTTTGGG+TGG | + | chr1_1:70215876-70215895 | None:intergenic | 30.0% |
| GAATAAATCATTGTGGCATA+AGG | + | chr1_1:70215964-70215983 | None:intergenic | 30.0% | |
| GTATTGTAACCCAAAAAACA+TGG | - | chr1_1:70216126-70216145 | Msa0040170:intron | 30.0% | |
| TGTACCTGAAGATAATTTCT+CGG | - | chr1_1:70216886-70216905 | Msa0040170:intron | 30.0% | |
| CATAAGACTAGAAAATGGAA+AGG | + | chr1_1:70217281-70217300 | None:intergenic | 30.0% | |
| GACTGATTATTGAGTACTAA+AGG | + | chr1_1:70217447-70217466 | None:intergenic | 30.0% | |
| GAAAAAGTTATATGAAGTGG+GGG | - | chr1_1:70217520-70217539 | Msa0040170:intron | 30.0% | |
| CATTCACCTTATCATACTAA+AGG | + | chr1_1:70217548-70217567 | None:intergenic | 30.0% | |
| TTCCATTTAAGGATTTGTGA+GGG | - | chr1_1:70217761-70217780 | Msa0040170:intron | 30.0% | |
| !! | TCTATTTCTGTTGTTCTTCT+CGG | + | chr1_1:70218029-70218048 | None:intergenic | 30.0% |
| CAAAAAGATCTATAGTGCTA+AGG | + | chr1_1:70218118-70218137 | None:intergenic | 30.0% | |
| ! | GATCTTTTTGATATATGGTG+GGG | - | chr1_1:70218128-70218147 | Msa0040170:CDS | 30.0% |
| !! | GGGTTTTGATCAATGATAAA+GGG | - | chr1_1:70218148-70218167 | Msa0040170:CDS | 30.0% |
| !! | GGTTTTGATCAATGATAAAG+GGG | - | chr1_1:70218149-70218168 | Msa0040170:CDS | 30.0% |
| !! | GTTTTGATCAATGATAAAGG+GGG | - | chr1_1:70218150-70218169 | Msa0040170:CDS | 30.0% |
| ! | TTTTGATCAATGATAAAGGG+GGG | - | chr1_1:70218151-70218170 | Msa0040170:CDS | 30.0% |
| AGCTAAAAACTAAAGGCAAA+AGG | - | chr1_1:70218179-70218198 | Msa0040170:CDS | 30.0% | |
| AATCTTGGGAAAATATGCAT+TGG | - | chr1_1:70218223-70218242 | Msa0040170:CDS | 30.0% | |
| ATCTTGGGAAAATATGCATT+GGG | - | chr1_1:70218224-70218243 | Msa0040170:CDS | 30.0% | |
| ! | AAAATATGCATTGGGGTATT+TGG | - | chr1_1:70218232-70218251 | Msa0040170:CDS | 30.0% |
| ATACAACTATGGTTCACATT+GGG | + | chr1_1:70218283-70218302 | None:intergenic | 30.0% | |
| AATACAACTATGGTTCACAT+TGG | + | chr1_1:70218284-70218303 | None:intergenic | 30.0% | |
| AAAAATGAGTATCTTGGACT+AGG | - | chr1_1:70218336-70218355 | Msa0040170:CDS | 30.0% | |
| AAAATGAGTATCTTGGACTA+GGG | - | chr1_1:70218337-70218356 | Msa0040170:CDS | 30.0% | |
| AATGGGGAAAGAATCATATT+AGG | - | chr1_1:70218373-70218392 | Msa0040170:five_prime_UTR | 30.0% | |
| GAGAAGAGAATAGAAGATTG+AGG | + | chr1_1:70214567-70214586 | None:intergenic | 35.0% | |
| ATAAAGCTCAAACCCATTTC+TGG | - | chr1_1:70214684-70214703 | Msa0040170:three_prime_UTR | 35.0% | |
| ! | TCTTCTATGGTGGTGTTTAT+AGG | + | chr1_1:70214848-70214867 | None:intergenic | 35.0% |
| ACCATAGAAGAAAACATCAC+CGG | - | chr1_1:70214857-70214876 | Msa0040170:three_prime_UTR | 35.0% | |
| ! | AAATGGGTTTAAGGAAACAG+AGG | + | chr1_1:70214906-70214925 | None:intergenic | 35.0% |
| ! | AGCAAAGGAAAATGGGTTTA+AGG | + | chr1_1:70214915-70214934 | None:intergenic | 35.0% |
| TATCATTTGAGTGGTTTCAG+AGG | + | chr1_1:70214939-70214958 | None:intergenic | 35.0% | |
| ! | TTGTGTTGTAGATGGACTTA+CGG | + | chr1_1:70214984-70215003 | None:intergenic | 35.0% |
| TATGCATGTTGTGTTGTAGA+TGG | + | chr1_1:70214992-70215011 | None:intergenic | 35.0% | |
| ACAGGACAACTATCTGTTAA+AGG | + | chr1_1:70215164-70215183 | None:intergenic | 35.0% | |
| !! | TTGATATCGTCGATTTCAGA+TGG | + | chr1_1:70215191-70215210 | None:intergenic | 35.0% |
| ! | ATCTGAAATCGACGATATCA+AGG | - | chr1_1:70215190-70215209 | Msa0040170:intron | 35.0% |
| TTCCTAGGAATAACATTCCT+TGG | - | chr1_1:70215289-70215308 | Msa0040170:intron | 35.0% | |
| TTCCAAGGAATGTTATTCCT+AGG | + | chr1_1:70215294-70215313 | None:intergenic | 35.0% | |
| ! | TCCCTATATTTAAGGTTCCT+TGG | + | chr1_1:70215382-70215401 | None:intergenic | 35.0% |
| ! | GAAAAGTTTTCCCAAGGAAA+AGG | + | chr1_1:70215463-70215482 | None:intergenic | 35.0% |
| ! | GGAATAGAAAAGTTTTCCCA+AGG | + | chr1_1:70215469-70215488 | None:intergenic | 35.0% |
| ! | TCCCAGGAATATTTTATACC+CGG | - | chr1_1:70215486-70215505 | Msa0040170:intron | 35.0% |
| TTGAAACAAACACACCCTTA+TGG | - | chr1_1:70215589-70215608 | Msa0040170:intron | 35.0% | |
| !! | GGAGGTATCAAATACCATAA+GGG | + | chr1_1:70215606-70215625 | None:intergenic | 35.0% |
| !! | TGGAGGTATCAAATACCATA+AGG | + | chr1_1:70215607-70215626 | None:intergenic | 35.0% |
| CAAGGAATAGAAACAAACCA+AGG | - | chr1_1:70216050-70216069 | Msa0040170:intron | 35.0% | |
| GAATAGAAACAAACCAAGGA+AGG | - | chr1_1:70216054-70216073 | Msa0040170:intron | 35.0% | |
| !!! | GCATAGAAGCCATGTTTTTT+GGG | + | chr1_1:70216138-70216157 | None:intergenic | 35.0% |
| !!! | TGCATAGAAGCCATGTTTTT+TGG | + | chr1_1:70216139-70216158 | None:intergenic | 35.0% |
| AGCTTAAATAGTTATCTGGG+TGG | - | chr1_1:70216199-70216218 | Msa0040170:CDS | 35.0% | |
| AAGATGGCTTAAGGATAGAA+AGG | - | chr1_1:70216258-70216277 | Msa0040170:CDS | 35.0% | |
| GGATAGAAAGGAGAAGAAAA+AGG | - | chr1_1:70216270-70216289 | Msa0040170:CDS | 35.0% | |
| AGAAGAAAAAGGAAGAAGCA+AGG | - | chr1_1:70216281-70216300 | Msa0040170:CDS | 35.0% | |
| GAAGAAAAAGGAAGAAGCAA+GGG | - | chr1_1:70216282-70216301 | Msa0040170:CDS | 35.0% | |
| !!! | TATGTTGATGTTTTTGGCGT+CGG | - | chr1_1:70216686-70216705 | Msa0040170:CDS | 35.0% |
| GTACCTGAAGATAATTTCTC+GGG | - | chr1_1:70216887-70216906 | Msa0040170:intron | 35.0% | |
| TTTAACAACAGATTTGGAGG+TGG | - | chr1_1:70217732-70217751 | Msa0040170:intron | 35.0% | |
| TTAACAACAGATTTGGAGGT+GGG | - | chr1_1:70217733-70217752 | Msa0040170:intron | 35.0% | |
| GTTCCATTTAAGGATTTGTG+AGG | - | chr1_1:70217760-70217779 | Msa0040170:intron | 35.0% | |
| TCCATTTAAGGATTTGTGAG+GGG | - | chr1_1:70217762-70217781 | Msa0040170:intron | 35.0% | |
| GGATTGAAAACATTATTGCG+TGG | - | chr1_1:70217923-70217942 | Msa0040170:intron | 35.0% | |
| ! | ATCAAAGAGAGTATGATGTG+TGG | - | chr1_1:70217969-70217988 | Msa0040170:intron | 35.0% |
| !! | GGGGTTTTGATCAATGATAA+AGG | - | chr1_1:70218147-70218166 | Msa0040170:CDS | 35.0% |
| TTTGATCAATGATAAAGGGG+GGG | - | chr1_1:70218152-70218171 | Msa0040170:CDS | 35.0% | |
| GGGTGTAAGCTAAAAACTAA+AGG | - | chr1_1:70218172-70218191 | Msa0040170:CDS | 35.0% | |
| AAGATTAAAGTAACCCCAAC+TGG | + | chr1_1:70218209-70218228 | None:intergenic | 35.0% | |
| ! | AGTTGGGGTTACTTTAATCT+TGG | - | chr1_1:70218208-70218227 | Msa0040170:CDS | 35.0% |
| ! | GTTGGGGTTACTTTAATCTT+GGG | - | chr1_1:70218209-70218228 | Msa0040170:CDS | 35.0% |
| TCTTGGGAAAATATGCATTG+GGG | - | chr1_1:70218225-70218244 | Msa0040170:CDS | 35.0% | |
| TAGGGAACAGTCAAAAAGAA+TGG | - | chr1_1:70218355-70218374 | Msa0040170:exon | 35.0% | |
| AGGGAACAGTCAAAAAGAAT+GGG | - | chr1_1:70218356-70218375 | Msa0040170:exon | 35.0% | |
| GGGAAAGAATCATATTAGGA+GGG | - | chr1_1:70218377-70218396 | Msa0040170:five_prime_UTR | 35.0% | |
| AATGTGCAAACAACACAGAT+AGG | + | chr1_1:70218434-70218453 | None:intergenic | 35.0% | |
| !! | ATCTGTGTTGTTTGCACATT+TGG | - | chr1_1:70218434-70218453 | Msa0040170:five_prime_UTR | 35.0% |
| AAGAAAAGAGAAGAGCAGAG+AGG | + | chr1_1:70214527-70214546 | None:intergenic | 40.0% | |
| ! | AGAAGAAGAGGAGAGAGTTT+TGG | + | chr1_1:70214813-70214832 | None:intergenic | 40.0% |
| AGGTTTGGAAGAAGAAGAAG+AGG | + | chr1_1:70214825-70214844 | None:intergenic | 40.0% | |
| ! | TCTATGGTGGTGTTTATAGG+AGG | + | chr1_1:70214845-70214864 | None:intergenic | 40.0% |
| ! | GGTGATGTTTTCTTCTATGG+TGG | + | chr1_1:70214858-70214877 | None:intergenic | 40.0% |
| ! | TCCGGTGATGTTTTCTTCTA+TGG | + | chr1_1:70214861-70214880 | None:intergenic | 40.0% |
| CAGAGGAAGCAAAGGAAAAT+GGG | + | chr1_1:70214922-70214941 | None:intergenic | 40.0% | |
| TCAGAGGAAGCAAAGGAAAA+TGG | + | chr1_1:70214923-70214942 | None:intergenic | 40.0% | |
| GCGTTCCATTATCATTTGAG+TGG | + | chr1_1:70214948-70214967 | None:intergenic | 40.0% | |
| TCGATTTCAGATGGTGAAAC+AGG | + | chr1_1:70215182-70215201 | None:intergenic | 40.0% | |
| ! | TTTATTCCCACCCTTTTCCT+TGG | - | chr1_1:70215449-70215468 | Msa0040170:intron | 40.0% |
| ! | TTATTCCCACCCTTTTCCTT+GGG | - | chr1_1:70215450-70215469 | Msa0040170:intron | 40.0% |
| ! | GGGAAAACTTTTCTATTCCC+AGG | - | chr1_1:70215470-70215489 | Msa0040170:intron | 40.0% |
| CCCGGGTATAAAATATTCCT+GGG | + | chr1_1:70215490-70215509 | None:intergenic | 40.0% | |
| ! | CCCAGGAATATTTTATACCC+GGG | - | chr1_1:70215487-70215506 | Msa0040170:intron | 40.0% |
| TCCCGGGTATAAAATATTCC+TGG | + | chr1_1:70215491-70215510 | None:intergenic | 40.0% | |
| TATCCCTCTCTCTGCATTAA+TGG | - | chr1_1:70215916-70215935 | Msa0040170:intron | 40.0% | |
| CAACCATTAATGCAGAGAGA+GGG | + | chr1_1:70215922-70215941 | None:intergenic | 40.0% | |
| TCAACCATTAATGCAGAGAG+AGG | + | chr1_1:70215923-70215942 | None:intergenic | 40.0% | |
| GTTGAAGATTGTGCAGATGA+AGG | - | chr1_1:70215938-70215957 | Msa0040170:intron | 40.0% | |
| ACCAGCAGATCTAACATTCA+CGG | + | chr1_1:70216536-70216555 | None:intergenic | 40.0% | |
| ATTCCTGTGGAGAGAAGTTT+GGG | - | chr1_1:70216809-70216828 | Msa0040170:CDS | 40.0% | |
| GTACCCGAGAAATTATCTTC+AGG | + | chr1_1:70216893-70216912 | None:intergenic | 40.0% | |
| AGTAGAGAATTACTTGCCAG+AGG | - | chr1_1:70216920-70216939 | Msa0040170:intron | 40.0% | |
| ATTGAATCCAAACACGCACT+TGG | - | chr1_1:70217204-70217223 | Msa0040170:intron | 40.0% | |
| GTAAAATCCAAGTGCGTGTT+TGG | + | chr1_1:70217214-70217233 | None:intergenic | 40.0% | |
| !! | TTGATTCCTGAGTTTTGTGC+AGG | - | chr1_1:70217325-70217344 | Msa0040170:intron | 40.0% |
| ! | ATTTTGAGCTCCTGTTCTGA+GGG | - | chr1_1:70218048-70218067 | Msa0040170:intron | 40.0% |
| GGGAACAGTCAAAAAGAATG+GGG | - | chr1_1:70218357-70218376 | Msa0040170:exon | 40.0% | |
| GGGGAAAGAATCATATTAGG+AGG | - | chr1_1:70218376-70218395 | Msa0040170:five_prime_UTR | 40.0% | |
| GGAACATGGAAGAGTGAAGT+GGG | + | chr1_1:70214718-70214737 | None:intergenic | 45.0% | |
| ! | ATTGGTGCTTGTGGTGTTTC+TGG | + | chr1_1:70214746-70214765 | None:intergenic | 45.0% |
| AGAAACACCACAAGCACCAA+TGG | - | chr1_1:70214745-70214764 | Msa0040170:three_prime_UTR | 45.0% | |
| ! | AGAAACTCCATTGGTGCTTG+TGG | + | chr1_1:70214755-70214774 | None:intergenic | 45.0% |
| GAACGTGAGAGAAACTCCAT+TGG | + | chr1_1:70214764-70214783 | None:intergenic | 45.0% | |
| TGGAGTTTCTCTCACGTTCA+TGG | - | chr1_1:70214765-70214784 | Msa0040170:three_prime_UTR | 45.0% | |
| GGTGGTGTTTATAGGAGGTT+TGG | + | chr1_1:70214840-70214859 | None:intergenic | 45.0% | |
| GGTTTCTTCTTCGGTTTCTC+CGG | + | chr1_1:70214879-70214898 | None:intergenic | 45.0% | |
| AGAGGAGGAGGTTTCTTCTT+CGG | + | chr1_1:70214888-70214907 | None:intergenic | 45.0% | |
| GTTTAAGGAAACAGAGGAGG+AGG | + | chr1_1:70214900-70214919 | None:intergenic | 45.0% | |
| TGGGTTTAAGGAAACAGAGG+AGG | + | chr1_1:70214903-70214922 | None:intergenic | 45.0% | |
| AGTGGTTTCAGAGGAAGCAA+AGG | + | chr1_1:70214930-70214949 | None:intergenic | 45.0% | |
| TCTGTGTCTCCAAGAACTTC+AGG | - | chr1_1:70215116-70215135 | Msa0040170:CDS | 45.0% | |
| CTGTGTCTCCAAGAACTTCA+GGG | - | chr1_1:70215117-70215136 | Msa0040170:CDS | 45.0% | |
| ! | GTTTTCCCAAGGAAAAGGGT+GGG | + | chr1_1:70215458-70215477 | None:intergenic | 45.0% |
| ! | AGTTTTCCCAAGGAAAAGGG+TGG | + | chr1_1:70215459-70215478 | None:intergenic | 45.0% |
| TCTGTTAGATTGTAGGGACC+AGG | + | chr1_1:70215830-70215849 | None:intergenic | 45.0% | |
| ATGCATTCTTCCCTGCAGTA+CGG | - | chr1_1:70216154-70216173 | Msa0040170:CDS | 45.0% | |
| GGAGAAAGCGAATAGTGACT+CGG | - | chr1_1:70216411-70216430 | Msa0040170:intron | 45.0% | |
| AGCAGATCTAACATTCACGG+CGG | + | chr1_1:70216533-70216552 | None:intergenic | 45.0% | |
| ! | TGTGTTGTTGTAGCTTTGCG+TGG | - | chr1_1:70216731-70216750 | Msa0040170:CDS | 45.0% |
| ! | GTGTTGTTGTAGCTTTGCGT+GGG | - | chr1_1:70216732-70216751 | Msa0040170:CDS | 45.0% |
| ! | TGTTGTTGTAGCTTTGCGTG+GGG | - | chr1_1:70216733-70216752 | Msa0040170:CDS | 45.0% |
| !! | ATTGAAAGCGAGGGCATTGA+AGG | - | chr1_1:70216763-70216782 | Msa0040170:CDS | 45.0% |
| TATTGCAGCAGTGATTCCTG+TGG | - | chr1_1:70216796-70216815 | Msa0040170:CDS | 45.0% | |
| GATTCCTGTGGAGAGAAGTT+TGG | - | chr1_1:70216808-70216827 | Msa0040170:CDS | 45.0% | |
| TTCCTGTGGAGAGAAGTTTG+GGG | - | chr1_1:70216810-70216829 | Msa0040170:CDS | 45.0% | |
| !! | GCTTCTGGTGGTAATGGTAA+TGG | - | chr1_1:70216833-70216852 | Msa0040170:CDS | 45.0% |
| AGTTCCCATAGTAGCTTCAG+CGG | - | chr1_1:70216857-70216876 | Msa0040170:intron | 45.0% | |
| CTTCAGAAGTTCACAACCTC+TGG | + | chr1_1:70216939-70216958 | None:intergenic | 45.0% | |
| AGATCACCTGCACAAAACTC+AGG | + | chr1_1:70217334-70217353 | None:intergenic | 45.0% | |
| TTTGTGCAGGTGATCTTCAC+TGG | - | chr1_1:70217338-70217357 | Msa0040170:intron | 45.0% | |
| ! | GGGGCACCTTTAGTATGATA+AGG | - | chr1_1:70217539-70217558 | Msa0040170:intron | 45.0% |
| !! | GGTGGGTCTTGTTCCATTTA+AGG | - | chr1_1:70217750-70217769 | Msa0040170:intron | 45.0% |
| GCCCCTCACAAATCCTTAAA+TGG | + | chr1_1:70217766-70217785 | None:intergenic | 45.0% | |
| TTGTGAGGGGCAAGATCAAA+AGG | - | chr1_1:70217775-70217794 | Msa0040170:intron | 45.0% | |
| TGTGAGGGGCAAGATCAAAA+GGG | - | chr1_1:70217776-70217795 | Msa0040170:intron | 45.0% | |
| TGATCAAAGATATGCCCGCT+TGG | - | chr1_1:70217855-70217874 | Msa0040170:intron | 45.0% | |
| AGAGTATGATGTGTGGACTC+AGG | - | chr1_1:70217976-70217995 | Msa0040170:intron | 45.0% | |
| GAGTATGATGTGTGGACTCA+GGG | - | chr1_1:70217977-70217996 | Msa0040170:intron | 45.0% | |
| ! | GATTTTGAGCTCCTGTTCTG+AGG | - | chr1_1:70218047-70218066 | Msa0040170:intron | 45.0% |
| !! | TTTTGAGCTCCTGTTCTGAG+GGG | - | chr1_1:70218049-70218068 | Msa0040170:intron | 45.0% |
| ! | TTCTGAGGGGGGAGAAATTT+AGG | - | chr1_1:70218062-70218081 | Msa0040170:intron | 45.0% |
| GGGGGAGAAATTTAGGCAAT+GGG | - | chr1_1:70218069-70218088 | Msa0040170:CDS | 45.0% | |
| GGGGAGAAATTTAGGCAATG+GGG | - | chr1_1:70218070-70218089 | Msa0040170:CDS | 45.0% | |
| GGGAGAAATTTAGGCAATGG+GGG | - | chr1_1:70218071-70218090 | Msa0040170:CDS | 45.0% | |
| ! | AAGGCAAAAGGTATGCCAGT+TGG | - | chr1_1:70218191-70218210 | Msa0040170:CDS | 45.0% |
| ! | AGGCAAAAGGTATGCCAGTT+GGG | - | chr1_1:70218192-70218211 | Msa0040170:CDS | 45.0% |
| ! | AAATTATGGGCTTTGGCTCC+TGG | - | chr1_1:70218518-70218537 | Msa0040170:intron | 45.0% |
| !! | ATTAATACAATATAAAATTA+TGG | - | chr1_1:70218504-70218523 | Msa0040170:intron | 5.0% |
| !! | TTAATACAATATAAAATTAT+GGG | - | chr1_1:70218505-70218524 | Msa0040170:intron | 5.0% |
| CTCTCTCTCTCTCTCTCTCA+TGG | - | chr1_1:70214661-70214680 | Msa0040170:three_prime_UTR | 50.0% | |
| ATGGAAGAGTGAAGTGGGTC+GGG | + | chr1_1:70214713-70214732 | None:intergenic | 50.0% | |
| CATGGAAGAGTGAAGTGGGT+CGG | + | chr1_1:70214714-70214733 | None:intergenic | 50.0% | |
| CGGAACATGGAAGAGTGAAG+TGG | + | chr1_1:70214719-70214738 | None:intergenic | 50.0% | |
| !! | TGTTTCTGGTGGACGGAACA+TGG | + | chr1_1:70214732-70214751 | None:intergenic | 50.0% |
| !! | CTTGTGGTGTTTCTGGTGGA+CGG | + | chr1_1:70214739-70214758 | None:intergenic | 50.0% |
| GAGAGTCTCCCTGAAGTTCT+TGG | + | chr1_1:70215128-70215147 | None:intergenic | 50.0% | |
| ! | TTACACCGCCGTTGTTTCCA+CGG | + | chr1_1:70216180-70216199 | None:intergenic | 50.0% |
| GTGGTAAGACGGTTGGAAGA+TGG | - | chr1_1:70216242-70216261 | Msa0040170:CDS | 50.0% | |
| GACGGTTGGAAGATGGCTTA+AGG | - | chr1_1:70216249-70216268 | Msa0040170:CDS | 50.0% | |
| ! | AGCATGAACCTGGGCATTGT+GGG | + | chr1_1:70216308-70216327 | None:intergenic | 50.0% |
| AGATACCGCAGCATGAACCT+GGG | + | chr1_1:70216317-70216336 | None:intergenic | 50.0% | |
| TGCAGCAATTGCAGCTACTG+CGG | + | chr1_1:70216356-70216375 | None:intergenic | 50.0% | |
| ! | TTTTCCAGACCCAGACGAAG+CGG | + | chr1_1:70216386-70216405 | None:intergenic | 50.0% |
| ! | AGCGAATAGTGACTCGGCTT+TGG | - | chr1_1:70216417-70216436 | Msa0040170:intron | 50.0% |
| ! | TTTGGCTTCTGCAGCAACGT+TGG | - | chr1_1:70216435-70216454 | Msa0040170:intron | 50.0% |
| TCAGTGTGTTGAGACTGCAG+AGG | - | chr1_1:70216465-70216484 | Msa0040170:CDS | 50.0% | |
| GCCGTGAATGTTAGATCTGC+TGG | - | chr1_1:70216532-70216551 | Msa0040170:CDS | 50.0% | |
| TTAACTGCTGCTGCTGCAAC+AGG | - | chr1_1:70216568-70216587 | Msa0040170:CDS | 50.0% | |
| GGCTGCAACATTGAAAGCGA+GGG | - | chr1_1:70216754-70216773 | Msa0040170:CDS | 50.0% | |
| !! | CGAGGGCATTGAAGGAAGTT+TGG | - | chr1_1:70216771-70216790 | Msa0040170:CDS | 50.0% |
| TCCTGTGGAGAGAAGTTTGG+GGG | - | chr1_1:70216811-70216830 | Msa0040170:CDS | 50.0% | |
| CTCACCGCTGAAGCTACTAT+GGG | + | chr1_1:70216864-70216883 | None:intergenic | 50.0% | |
| ATGAAGAGTAGGCACGTTGC+TGG | - | chr1_1:70217642-70217661 | Msa0040170:intron | 50.0% | |
| TGAAGAGTAGGCACGTTGCT+GGG | - | chr1_1:70217643-70217662 | Msa0040170:intron | 50.0% | |
| CAAAGATATGCCCGCTTGGA+CGG | - | chr1_1:70217859-70217878 | Msa0040170:intron | 50.0% | |
| AAAGATATGCCCGCTTGGAC+GGG | - | chr1_1:70217860-70217879 | Msa0040170:intron | 50.0% | |
| GGTGAGAATCGTCGCTACTT+TGG | - | chr1_1:70217902-70217921 | Msa0040170:CDS | 50.0% | |
| GTTGTTCTTCTCGGCTGCAA+TGG | + | chr1_1:70218020-70218039 | None:intergenic | 50.0% | |
| !! | TTTGAGCTCCTGTTCTGAGG+GGG | - | chr1_1:70218050-70218069 | Msa0040170:intron | 50.0% |
| AATTTCTCCCCCCTCAGAAC+AGG | + | chr1_1:70218061-70218080 | None:intergenic | 50.0% | |
| GGGGGGAGAAATTTAGGCAA+TGG | - | chr1_1:70218068-70218087 | Msa0040170:CDS | 50.0% | |
| TAGGCAATGGGGGACATACA+AGG | - | chr1_1:70218081-70218100 | Msa0040170:CDS | 50.0% | |
| GGGGGACATACAAGGATCTA+TGG | - | chr1_1:70218089-70218108 | Msa0040170:CDS | 50.0% | |
| ! | GGCAAAAGGTATGCCAGTTG+GGG | - | chr1_1:70218193-70218212 | Msa0040170:CDS | 50.0% |
| TGGGTCGGGTCTCCAGAAAT+GGG | + | chr1_1:70214699-70214718 | None:intergenic | 55.0% | |
| !! | GGTGCTTGTGGTGTTTCTGG+TGG | + | chr1_1:70214743-70214762 | None:intergenic | 55.0% |
| GGGAGACTCTCACACAGTAG+TGG | - | chr1_1:70215137-70215156 | Msa0040170:CDS | 55.0% | |
| CAGTACGGCCGTGGAAACAA+CGG | - | chr1_1:70216169-70216188 | Msa0040170:CDS | 55.0% | |
| !! | TGGTGGTGGTGGTGGTAAGA+CGG | - | chr1_1:70216231-70216250 | Msa0040170:CDS | 55.0% |
| ! | CAGCATGAACCTGGGCATTG+TGG | + | chr1_1:70216309-70216328 | None:intergenic | 55.0% |
| CAATGCCCAGGTTCATGCTG+CGG | - | chr1_1:70216309-70216328 | Msa0040170:intron | 55.0% | |
| CAGATACCGCAGCATGAACC+TGG | + | chr1_1:70216318-70216337 | None:intergenic | 55.0% | |
| GGTTCATGCTGCGGTATCTG+TGG | - | chr1_1:70216318-70216337 | Msa0040170:intron | 55.0% | |
| AGCAATTGCAGCTACTGCGG+CGG | + | chr1_1:70216353-70216372 | None:intergenic | 55.0% | |
| GTCTGGGTCTGGAAAAGACG+AGG | - | chr1_1:70216390-70216409 | Msa0040170:intron | 55.0% | |
| ! | TTCTGCAGCAACGTTGGTGG+CGG | - | chr1_1:70216441-70216460 | Msa0040170:intron | 55.0% |
| ! | TGTTGAGACTGCAGAGGCGT+TGG | - | chr1_1:70216471-70216490 | Msa0040170:CDS | 55.0% |
| !! | GTTGAGACTGCAGAGGCGTT+GGG | - | chr1_1:70216472-70216491 | Msa0040170:CDS | 55.0% |
| !! | TTGAGACTGCAGAGGCGTTG+GGG | - | chr1_1:70216473-70216492 | Msa0040170:CDS | 55.0% |
| GGGCTGCAACATTGAAAGCG+AGG | - | chr1_1:70216753-70216772 | Msa0040170:CDS | 55.0% | |
| GAGAGAAGTTTGGGGGCTTC+TGG | - | chr1_1:70216818-70216837 | Msa0040170:CDS | 55.0% | |
| AGAAGTTTGGGGGCTTCTGG+TGG | - | chr1_1:70216821-70216840 | Msa0040170:CDS | 55.0% | |
| TTGGGGGCTTCTGGTGGTAA+TGG | - | chr1_1:70216827-70216846 | Msa0040170:CDS | 55.0% | |
| GCTCACCGCTGAAGCTACTA+TGG | + | chr1_1:70216865-70216884 | None:intergenic | 55.0% | |
| !! | CTTCTGAAGCGCACACGCAA+AGG | - | chr1_1:70216950-70216969 | Msa0040170:intron | 55.0% |
| TCTCACCGCCTTCCAGCAAA+TGG | + | chr1_1:70217889-70217908 | None:intergenic | 55.0% | |
| TCTCGGCTGCAATGGAAAGC+AGG | + | chr1_1:70218012-70218031 | None:intergenic | 55.0% | |
| !! | TTGAGCTCCTGTTCTGAGGG+GGG | - | chr1_1:70218051-70218070 | Msa0040170:intron | 55.0% |
| GAGAGAGAGCGAGAGCGAGT+GGG | + | chr1_1:70214622-70214641 | None:intergenic | 60.0% | |
| AGAGAGAGAGCGAGAGCGAG+TGG | + | chr1_1:70214623-70214642 | None:intergenic | 60.0% | |
| GTGGGTCGGGTCTCCAGAAA+TGG | + | chr1_1:70214700-70214719 | None:intergenic | 60.0% | |
| GTTTCCACGGCCGTACTGCA+GGG | + | chr1_1:70216167-70216186 | None:intergenic | 60.0% | |
| TGTTTCCACGGCCGTACTGC+AGG | + | chr1_1:70216168-70216187 | None:intergenic | 60.0% | |
| TACGGCCGTGGAAACAACGG+CGG | - | chr1_1:70216172-70216191 | Msa0040170:CDS | 60.0% | |
| TATCTGGGTGGCAGACCACC+TGG | - | chr1_1:70216211-70216230 | Msa0040170:CDS | 60.0% | |
| TTACCACCACCACCACCAGG+TGG | + | chr1_1:70216229-70216248 | None:intergenic | 60.0% | |
| GTCTTACCACCACCACCACC+AGG | + | chr1_1:70216232-70216251 | None:intergenic | 60.0% | |
| !! | GGTGGTGGTGGTAAGACGGT+TGG | - | chr1_1:70216235-70216254 | Msa0040170:CDS | 60.0% |
| GGCTTCTGCAGCAACGTTGG+TGG | - | chr1_1:70216438-70216457 | Msa0040170:intron | 60.0% | |
| !! | TGAGACTGCAGAGGCGTTGG+GGG | - | chr1_1:70216474-70216493 | Msa0040170:CDS | 60.0% |
| GGAACGGGAACACCTTGCTG+CGG | - | chr1_1:70216498-70216517 | Msa0040170:CDS | 60.0% | |
| CGGAGTTAACCACCGCAGCA+AGG | + | chr1_1:70216513-70216532 | None:intergenic | 60.0% | |
| GCCCCCAAACTTCTCTCCAC+AGG | + | chr1_1:70216815-70216834 | None:intergenic | 60.0% | |
| AAATGGCGTCCCGTCCAAGC+GGG | + | chr1_1:70217872-70217891 | None:intergenic | 60.0% | |
| CAAATGGCGTCCCGTCCAAG+CGG | + | chr1_1:70217873-70217892 | None:intergenic | 60.0% | |
| TTGGACGGGACGCCATTTGC+TGG | - | chr1_1:70217874-70217893 | Msa0040170:CDS | 60.0% | |
| ! | ACGGGACGCCATTTGCTGGA+AGG | - | chr1_1:70217878-70217897 | Msa0040170:CDS | 60.0% |
| ! | GGACGCCATTTGCTGGAAGG+CGG | - | chr1_1:70217881-70217900 | Msa0040170:CDS | 60.0% |
| GCGAGTGGGTGAGGAGGAGT+GGG | + | chr1_1:70214608-70214627 | None:intergenic | 65.0% | |
| AGCGAGTGGGTGAGGAGGAG+TGG | + | chr1_1:70214609-70214628 | None:intergenic | 65.0% | |
| AGAGCGAGAGCGAGTGGGTG+AGG | + | chr1_1:70214617-70214636 | None:intergenic | 65.0% | |
| TCTTCCCTGCAGTACGGCCG+TGG | - | chr1_1:70216160-70216179 | Msa0040170:CDS | 65.0% | |
| !! | AGACCACCTGGTGGTGGTGG+TGG | - | chr1_1:70216223-70216242 | Msa0040170:CDS | 65.0% |
| AGCAAGGGCCCACAATGCCC+AGG | - | chr1_1:70216297-70216316 | Msa0040170:intron | 65.0% | |
| TCCAGACCCAGACGAAGCGG+CGG | + | chr1_1:70216383-70216402 | None:intergenic | 65.0% | |
| ACGGGAACACCTTGCTGCGG+TGG | - | chr1_1:70216501-70216520 | Msa0040170:CDS | 65.0% | |
| GCGAGAGCGAGTGGGTGAGG+AGG | + | chr1_1:70214614-70214633 | None:intergenic | 70.0% | |
| CTGGGTGGCAGACCACCTGG+TGG | - | chr1_1:70216214-70216233 | Msa0040170:CDS | 70.0% | |
| GGTGGCAGACCACCTGGTGG+TGG | - | chr1_1:70216217-70216236 | Msa0040170:CDS | 70.0% | |
| !! | GGCAGACCACCTGGTGGTGG+TGG | - | chr1_1:70216220-70216239 | Msa0040170:CDS | 70.0% |
| CAGCCACCGCCGCTTCGTCT+GGG | - | chr1_1:70216374-70216393 | Msa0040170:intron | 70.0% | |
| AGACCCAGACGAAGCGGCGG+TGG | + | chr1_1:70216380-70216399 | None:intergenic | 70.0% | |
| ACCGCCGCTTCGTCTGGGTC+TGG | - | chr1_1:70216379-70216398 | Msa0040170:intron | 70.0% | |
| !! | GACTGCAGAGGCGTTGGGGG+CGG | - | chr1_1:70216477-70216496 | Msa0040170:CDS | 70.0% |
| !! | CAGAGGCGTTGGGGGCGGAA+CGG | - | chr1_1:70216482-70216501 | Msa0040170:CDS | 70.0% |
| !! | AGAGGCGTTGGGGGCGGAAC+GGG | - | chr1_1:70216483-70216502 | Msa0040170:CDS | 70.0% |
| GCAGCCACCGCCGCTTCGTC+TGG | - | chr1_1:70216373-70216392 | Msa0040170:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70214505 | 70218541 | 70214505 | ID=Msa0040170;Name=Msa0040170 |
| chr1_1 | mRNA | 70214505 | 70218541 | 70214505 | ID=Msa0040170-mRNA-1;Parent=Msa0040170;Name=Msa0040170-mRNA-1;_AED=0.13;_eAED=0.13;_QI=102|0.75|0.77|1|0.75|0.66|9|487|427 |
| chr1_1 | exon | 70214505 | 70215206 | 70214505 | ID=Msa0040170-mRNA-1:exon:23107;Parent=Msa0040170-mRNA-1 |
| chr1_1 | exon | 70215359 | 70215416 | 70215359 | ID=Msa0040170-mRNA-1:exon:23106;Parent=Msa0040170-mRNA-1 |
| chr1_1 | exon | 70215650 | 70215699 | 70215650 | ID=Msa0040170-mRNA-1:exon:23105;Parent=Msa0040170-mRNA-1 |
| chr1_1 | exon | 70216138 | 70216302 | 70216138 | ID=Msa0040170-mRNA-1:exon:23104;Parent=Msa0040170-mRNA-1 |
| chr1_1 | exon | 70216457 | 70216874 | 70216457 | ID=Msa0040170-mRNA-1:exon:23103;Parent=Msa0040170-mRNA-1 |
| chr1_1 | exon | 70217865 | 70217939 | 70217865 | ID=Msa0040170-mRNA-1:exon:23102;Parent=Msa0040170-mRNA-1 |
| chr1_1 | exon | 70218064 | 70218399 | 70218064 | ID=Msa0040170-mRNA-1:exon:23101;Parent=Msa0040170-mRNA-1 |
| chr1_1 | exon | 70218420 | 70218468 | 70218420 | ID=Msa0040170-mRNA-1:exon:23100;Parent=Msa0040170-mRNA-1 |
| chr1_1 | exon | 70218522 | 70218541 | 70218522 | ID=Msa0040170-mRNA-1:exon:23099;Parent=Msa0040170-mRNA-1 |
| chr1_1 | five_prime_UTR | 70218522 | 70218541 | 70218522 | ID=Msa0040170-mRNA-1:five_prime_utr;Parent=Msa0040170-mRNA-1 |
| chr1_1 | five_prime_UTR | 70218420 | 70218468 | 70218420 | ID=Msa0040170-mRNA-1:five_prime_utr;Parent=Msa0040170-mRNA-1 |
| chr1_1 | five_prime_UTR | 70218367 | 70218399 | 70218367 | ID=Msa0040170-mRNA-1:five_prime_utr;Parent=Msa0040170-mRNA-1 |
| chr1_1 | CDS | 70218064 | 70218366 | 70218064 | ID=Msa0040170-mRNA-1:cds;Parent=Msa0040170-mRNA-1 |
| chr1_1 | CDS | 70217865 | 70217939 | 70217865 | ID=Msa0040170-mRNA-1:cds;Parent=Msa0040170-mRNA-1 |
| chr1_1 | CDS | 70216457 | 70216874 | 70216457 | ID=Msa0040170-mRNA-1:cds;Parent=Msa0040170-mRNA-1 |
| chr1_1 | CDS | 70216138 | 70216302 | 70216138 | ID=Msa0040170-mRNA-1:cds;Parent=Msa0040170-mRNA-1 |
| chr1_1 | CDS | 70215650 | 70215699 | 70215650 | ID=Msa0040170-mRNA-1:cds;Parent=Msa0040170-mRNA-1 |
| chr1_1 | CDS | 70215359 | 70215416 | 70215359 | ID=Msa0040170-mRNA-1:cds;Parent=Msa0040170-mRNA-1 |
| chr1_1 | CDS | 70214992 | 70215206 | 70214992 | ID=Msa0040170-mRNA-1:cds;Parent=Msa0040170-mRNA-1 |
| chr1_1 | three_prime_UTR | 70214505 | 70214991 | 70214505 | ID=Msa0040170-mRNA-1:three_prime_utr;Parent=Msa0040170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
