AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0180480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180480 MtrunA17_Chr1g0204831 91.721 459 13 4 1 437 1 456 0.0 837
Msa0180480 MtrunA17_Chr1g0166381 64.182 483 111 10 1 436 1 468 1.19e-151 438
Msa0180480 MtrunA17_Chr1g0185201 58.963 463 140 10 20 435 24 483 1.84e-131 387
Msa0180480 MtrunA17_Chr7g0260211 56.410 468 158 8 10 434 8 472 3.76e-131 386
Msa0180480 MtrunA17_Chr3g0140081 39.753 405 207 11 29 430 1 371 3.04e-59 198
Msa0180480 MtrunA17_Chr4g0019631 49.789 237 106 5 161 386 63 297 4.90e-47 164
Msa0180480 MtrunA17_Chr5g0399391 39.209 278 142 6 163 425 113 378 1.16e-42 154
Msa0180480 MtrunA17_Chr4g0073191 34.201 269 159 7 163 428 146 399 3.70e-16 80.1
Msa0180480 MtrunA17_Chr7g0260231 61.538 39 15 0 396 434 9 47 1.28e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180480 AT3G22810.1 63.410 481 123 14 1 437 1 472 1.10e-175 500
Msa0180480 AT4G14740.1 60.208 480 139 10 1 434 1 474 1.41e-166 477
Msa0180480 AT4G14740.2 60.208 480 139 10 1 434 1 474 1.41e-166 477
Msa0180480 AT5G43870.1 59.519 457 141 8 7 434 11 452 6.54e-148 429
Msa0180480 AT3G22810.2 62.683 410 100 14 1 366 1 401 3.37e-133 390
Msa0180480 AT4G14740.4 59.322 413 116 10 1 367 1 407 8.60e-128 376
Msa0180480 AT3G22810.3 68.874 302 68 3 162 437 33 334 1.37e-122 360
Msa0180480 AT3G63300.1 57.434 491 137 17 10 435 7 490 2.30e-122 365
Msa0180480 AT4G14740.3 68.227 299 69 2 162 434 37 335 9.25e-117 345
Msa0180480 AT5G43870.2 58.462 390 118 8 7 367 11 385 4.56e-109 327
Msa0180480 AT3G63300.2 63.158 304 87 5 155 435 31 332 1.67e-79 249
Msa0180480 AT4G17350.1 42.806 278 135 7 163 425 115 383 3.82e-42 154
Msa0180480 AT4G32780.1 38.200 411 200 9 21 426 34 395 1.93e-41 152
Msa0180480 AT4G32780.2 38.200 411 200 9 21 426 53 414 3.44e-41 152
Msa0180480 AT5G47440.1 40.377 265 144 5 171 429 131 387 1.33e-37 141
Msa0180480 AT4G16670.1 35.689 283 156 4 163 425 132 408 1.25e-36 139
Msa0180480 AT4G16670.2 39.286 224 111 3 163 366 132 350 3.03e-29 117
Msa0180480 AT4G16670.3 39.320 206 100 3 163 348 132 332 5.07e-24 103
Msa0180480 AT5G57770.1 40.092 217 123 4 163 375 128 341 1.82e-20 93.2
Msa0180480 AT5G57770.2 39.706 204 117 3 163 363 128 328 2.51e-19 89.4
Msa0180480 AT4G32780.3 35.385 260 117 6 21 277 53 264 3.81e-12 67.0

Find 167 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTGCTTGTGGTGTTTC+TGG 0.157684 1_4:-68378915 None:intergenic
GAAATATGCATTGGGGTATT+TGG 0.162692 1_4:+68382040 Msa0180480:three_prime_UTR
ATTAATACAATATAAAATTA+TGG 0.203256 1_4:+68382299 Msa0180480:three_prime_UTR
ATCTGTGTTGTTTGCACATT+TGG 0.204670 1_4:+68382242 Msa0180480:three_prime_UTR
GCAGCCACCGCCGCTTCGTC+TGG 0.211127 1_4:+68380188 Msa0180480:CDS
ATAAAGCTCAAACCCATTTC+TGG 0.227451 1_4:+68378856 Msa0180480:CDS
TCAGAGGAAGCAAAGGAAAA+TGG 0.240625 1_4:-68379092 None:intergenic
TCTTCTATGGTGGTGTTTAT+AGG 0.252498 1_4:-68379017 None:intergenic
TGTAAGCTTAAATAGTTATC+TGG 0.254925 1_4:+68380010 Msa0180480:CDS
AGGTTTCAGTCTTATTAAAA+AGG 0.267314 1_4:-68378611 None:intergenic
GCTCACCGCTGAAGCTACTA+TGG 0.269009 1_4:-68380677 None:intergenic
AGCAAAGGAAAATGGGTTTA+AGG 0.281335 1_4:-68379084 None:intergenic
TCTGTGTCTCCAAGAACTTC+AGG 0.300745 1_4:+68379283 Msa0180480:CDS
AGAAGAAGAGGAGAGAGTTT+TGG 0.301084 1_4:-68378982 None:intergenic
TCTATTTCTGTTGTTCTTCT+CGG 0.313221 1_4:-68381835 None:intergenic
ATTCCTGTGGAGAGAAGTTT+GGG 0.323759 1_4:+68380624 Msa0180480:CDS
ACAGGACAACTATCTGTTAA+AGG 0.327867 1_4:-68379328 None:intergenic
GGATAGAAAGGAGAAGAAAA+AGG 0.331067 1_4:+68380085 Msa0180480:CDS
TGGAGTTTCTCTCACGTTCA+TGG 0.340417 1_4:+68378937 Msa0180480:CDS
CAATATAAAATTATGGGCTT+TGG 0.341496 1_4:+68382306 Msa0180480:three_prime_UTR
TGAAACCACTCAAATGATAA+TGG 0.341964 1_4:+68379112 Msa0180480:CDS
CGAGGGCATTGAAGGAAGTT+TGG 0.344004 1_4:+68380586 Msa0180480:CDS
AAATTATGGGCTTTGGCTCC+TGG 0.344786 1_4:+68382313 Msa0180480:three_prime_UTR
AATGGGGAAAGAATCATATT+AGG 0.349637 1_4:+68382181 Msa0180480:three_prime_UTR
GAGAGTCTCCCTGAAGTTCT+TGG 0.351457 1_4:-68379292 None:intergenic
TTAATACAATATAAAATTAT+GGG 0.359321 1_4:+68382300 Msa0180480:three_prime_UTR
AGTTGGGGTTACTTTAATCT+TGG 0.360475 1_4:+68382017 Msa0180480:three_prime_UTR
GATTCCTGTGGAGAGAAGTT+TGG 0.362060 1_4:+68380623 Msa0180480:CDS
AGGCAAAAGGTATGCCAGTT+GGG 0.368488 1_4:+68382001 Msa0180480:three_prime_UTR
GGTGGTGTTTATAGGAGGTT+TGG 0.369428 1_4:-68379009 None:intergenic
AGCGAATAGTGACTCGGCTT+TGG 0.378325 1_4:+68380232 Msa0180480:CDS
CAGAGGAAGCAAAGGAAAAT+GGG 0.383629 1_4:-68379091 None:intergenic
GTGGGTCGGGTCTCCAGAAA+TGG 0.392955 1_4:-68378869 None:intergenic
GTTGAGACTGCAGAGGCGTT+GGG 0.398723 1_4:+68380287 Msa0180480:CDS
GGCAGACCACCTGGTGGTGG+TGG 0.399889 1_4:+68380035 Msa0180480:CDS
AATCTTGGGAAATATGCATT+GGG 0.403290 1_4:+68382032 Msa0180480:three_prime_UTR
AGATGAGGAGGTTTCTTCTT+CGG 0.403807 1_4:-68379057 None:intergenic
ACCGCCGCTTCGTCTGGGTC+TGG 0.406896 1_4:+68380194 Msa0180480:CDS
CTCTCTCTCGCTCTCTCTCA+TGG 0.408245 1_4:+68378833 Msa0180480:intron
TTAACTGCTGCTGCTGCAAC+AGG 0.412989 1_4:+68380383 Msa0180480:CDS
CAGATACCGCAGCATGAACC+TGG 0.413528 1_4:-68380130 None:intergenic
GTTGGGGTTACTTTAATCTT+GGG 0.415960 1_4:+68382018 Msa0180480:three_prime_UTR
AGACCACCTGGTGGTGGTGG+TGG 0.418708 1_4:+68380038 Msa0180480:CDS
AGCATGAACCTGGGCATTGT+GGG 0.420669 1_4:-68380120 None:intergenic
TCGATTTCAGATGGTGAAAC+AGG 0.421017 1_4:-68379346 None:intergenic
TTGGACGGGACGCCATTTGC+TGG 0.425146 1_4:+68381683 Msa0180480:CDS
ATGAAGAGTAGGCACGTTGC+TGG 0.426396 1_4:+68381451 Msa0180480:CDS
TTTGTGCAGGTGATCTTCAC+TGG 0.428772 1_4:+68381147 Msa0180480:intron
ATTGAAAGCGAGGGCATTGA+AGG 0.436129 1_4:+68380578 Msa0180480:CDS
CAGCCACCGCCGCTTCGTCT+GGG 0.436691 1_4:+68380189 Msa0180480:CDS
GGCTTCTGCAGCAACGTTGG+TGG 0.436826 1_4:+68380253 Msa0180480:CDS
TATTGTGTGTCAGTCAGGTC+AGG 0.437969 1_4:-68378631 None:intergenic
TAATCTTGGGAAATATGCAT+TGG 0.440071 1_4:+68382031 Msa0180480:three_prime_UTR
ATATATAAACAAAATGAATC+AGG 0.440520 1_4:+68381184 Msa0180480:CDS
AATTATGGGCTTTGGCTCCT+GGG 0.444167 1_4:+68382314 Msa0180480:three_prime_UTR
GGTTTCTTCTTCGGTTTCTC+CGG 0.446422 1_4:-68379048 None:intergenic
GGTGGCAGACCACCTGGTGG+TGG 0.447164 1_4:+68380032 Msa0180480:CDS
GAGAAGAGAATAGAAGATTG+AGG 0.451721 1_4:-68378730 None:intergenic
AGAAGAGAATAGAAGATTGA+GGG 0.452206 1_4:-68378729 None:intergenic
GATTGTATTGTGTGTCAGTC+AGG 0.454642 1_4:-68378636 None:intergenic
TGTACCTGAAGATAATTTCT+CGG 0.455360 1_4:+68380701 Msa0180480:CDS
TCTGTTCATACTATTGTAGT+AGG 0.465166 1_4:+68378560 Msa0180480:five_prime_UTR
ATGGAAGAGTGAAGTGGGTC+GGG 0.467808 1_4:-68378882 None:intergenic
TGAAAAGAACAATACAACTA+TGG 0.468165 1_4:-68382099 None:intergenic
GGTGAGAATCGTCGCTACTT+TGG 0.470784 1_4:+68381711 Msa0180480:CDS
CTGTGTCTCCAAGAACTTCA+GGG 0.474594 1_4:+68379284 Msa0180480:CDS
AAGATTAAAGTAACCCCAAC+TGG 0.475311 1_4:-68382015 None:intergenic
GACGGTTGGAAGATGGCTTA+AGG 0.476572 1_4:+68380064 Msa0180480:CDS
GCCGTGAATGTTAGATCTGC+TGG 0.478252 1_4:+68380347 Msa0180480:CDS
TCTCACCGCCTTCCAGCAAA+TGG 0.482869 1_4:-68381695 None:intergenic
CAAAGATATGCCCGCTTGGA+CGG 0.486154 1_4:+68381668 Msa0180480:CDS
AGACCCAGACGAAGCGGCGG+TGG 0.489654 1_4:-68380192 None:intergenic
TTTGGCTTCTGCAGCAACGT+TGG 0.493716 1_4:+68380250 Msa0180480:CDS
AAAATGAGTATCTTGGACTA+GGG 0.498822 1_4:+68382145 Msa0180480:three_prime_UTR
AAGATGGCTTAAGGATAGAA+AGG 0.499120 1_4:+68380073 Msa0180480:CDS
TGTTGAGACTGCAGAGGCGT+TGG 0.500590 1_4:+68380286 Msa0180480:CDS
TCTTCCCTGCAGTACGGCCG+TGG 0.502954 1_4:+68379975 Msa0180480:intron
CAGCATGAACCTGGGCATTG+TGG 0.503265 1_4:-68380121 None:intergenic
AAAGATATGCCCGCTTGGAC+GGG 0.506528 1_4:+68381669 Msa0180480:CDS
AGGTTTGGAAGAAGAAGAAG+AGG 0.509796 1_4:-68378994 None:intergenic
TTCTGCAGCAACGTTGGTGG+CGG 0.514743 1_4:+68380256 Msa0180480:CDS
GTTGTTCTTCTCGGCTGCAA+TGG 0.515717 1_4:-68381826 None:intergenic
TTGAGCTCCTGTTCTGAGGG+GGG 0.518041 1_4:+68381860 Msa0180480:exon
GTGGTAAGACGGTTGGAAGA+TGG 0.518581 1_4:+68380057 Msa0180480:CDS
TGACTGACACACAATACAAT+CGG 0.518611 1_4:+68378638 Msa0180480:five_prime_UTR
GGTGGTGGTGGTAAGACGGT+TGG 0.518939 1_4:+68380050 Msa0180480:CDS
TTTGAGCTCCTGTTCTGAGG+GGG 0.519648 1_4:+68381859 Msa0180480:exon
GCTTCTGGTGGTAATGGTAA+TGG 0.519867 1_4:+68380648 Msa0180480:CDS
TCTCGGCTGCAATGGAAAGC+AGG 0.520517 1_4:-68381818 None:intergenic
GTACCTGAAGATAATTTCTC+GGG 0.522129 1_4:+68380702 Msa0180480:CDS
TATCTGGGTGGCAGACCACC+TGG 0.524730 1_4:+68380026 Msa0180480:CDS
ATACAACTATGGTTCACATT+GGG 0.526699 1_4:-68382088 None:intergenic
GTACCCGAGAAATTATCTTC+AGG 0.529680 1_4:-68380705 None:intergenic
CGGAACATGGAAGAGTGAAG+TGG 0.533073 1_4:-68378888 None:intergenic
GGGAGAAATTTAGGCAATGG+GGG 0.535550 1_4:+68381880 Msa0180480:three_prime_UTR
ACGGGACGCCATTTGCTGGA+AGG 0.535811 1_4:+68381687 Msa0180480:CDS
TCTATGGTGGTGTTTATAGG+AGG 0.537077 1_4:-68379014 None:intergenic
TTACACCGCCGTTGTTTCCA+CGG 0.537355 1_4:-68379992 None:intergenic
TGTTTCTGGTGGACGGAACA+TGG 0.537758 1_4:-68378901 None:intergenic
GTAAGCTTAAATAGTTATCT+GGG 0.538154 1_4:+68380011 Msa0180480:CDS
ACGGGAACACCTTGCTGCGG+TGG 0.539252 1_4:+68380316 Msa0180480:CDS
TGAAGAGTAGGCACGTTGCT+GGG 0.541029 1_4:+68381452 Msa0180480:CDS
AAGGCAAAAGGTATGCCAGT+TGG 0.541356 1_4:+68382000 Msa0180480:three_prime_UTR
ATCTGAAATCGACGATATCA+AGG 0.541670 1_4:+68379357 Msa0180480:CDS
AATACAACTATGGTTCACAT+TGG 0.542153 1_4:-68382089 None:intergenic
TGGGTCGGGTCTCCAGAAAT+GGG 0.543717 1_4:-68378868 None:intergenic
AGCAAGGGCCCACAATGCCC+AGG 0.543868 1_4:+68380112 Msa0180480:CDS
AAATGGCGTCCCGTCCAAGC+GGG 0.545545 1_4:-68381678 None:intergenic
CTTGTGGTGTTTCTGGTGGA+CGG 0.553644 1_4:-68378908 None:intergenic
GGGGAAAGAATCATATTAGG+AGG 0.554020 1_4:+68382184 Msa0180480:three_prime_UTR
GCGTTCCATTATCATTTGAG+TGG 0.554237 1_4:-68379117 None:intergenic
AGAAACACCACAAGCACCAA+TGG 0.558033 1_4:+68378917 Msa0180480:CDS
AGAGTATGATGTGTGGACTC+AGG 0.560327 1_4:+68381785 Msa0180480:CDS
GTGTTGTTGTAGCTTTGCGT+GGG 0.562118 1_4:+68380547 Msa0180480:intron
AATGTGCAAACAACACAGAT+AGG 0.562501 1_4:-68382239 None:intergenic
TGATCAAAGATATGCCCGCT+TGG 0.565703 1_4:+68381664 Msa0180480:CDS
TTGATATCGTCGATTTCAGA+TGG 0.568899 1_4:-68379355 None:intergenic
CATGGAAGAGTGAAGTGGGT+CGG 0.569299 1_4:-68378883 None:intergenic
AGAAACTCCATTGGTGCTTG+TGG 0.572480 1_4:-68378924 None:intergenic
TGCAGCAATTGCAGCTACTG+CGG 0.572535 1_4:-68380168 None:intergenic
TTGAGACTGCAGAGGCGTTG+GGG 0.573228 1_4:+68380288 Msa0180480:CDS
AGTGGTTTCAGAGGAAGCAA+AGG 0.575283 1_4:-68379099 None:intergenic
TCCTGTGGAGAGAAGTTTGG+GGG 0.582754 1_4:+68380626 Msa0180480:CDS
GGGAAAGAATCATATTAGGA+GGG 0.583654 1_4:+68382185 Msa0180480:three_prime_UTR
GTTTAAGGAAACAGATGAGG+AGG 0.587336 1_4:-68379069 None:intergenic
GGGGAGAAATTTAGGCAATG+GGG 0.590118 1_4:+68381879 Msa0180480:three_prime_UTR
ACCAGCAGATCTAACATTCA+CGG 0.590450 1_4:-68380348 None:intergenic
GGTGCTTGTGGTGTTTCTGG+TGG 0.594073 1_4:-68378912 None:intergenic
GGCAAAAGGTATGCCAGTTG+GGG 0.595796 1_4:+68382002 Msa0180480:three_prime_UTR
GGGCTGCAACATTGAAAGCG+AGG 0.600321 1_4:+68380568 Msa0180480:CDS
TGTGTTGTTGTAGCTTTGCG+TGG 0.600647 1_4:+68380546 Msa0180480:intron
TCCAGACCCAGACGAAGCGG+CGG 0.601265 1_4:-68380195 None:intergenic
TATCATTTGAGTGGTTTCAG+AGG 0.602274 1_4:-68379108 None:intergenic
AGCAATTGCAGCTACTGCGG+CGG 0.603464 1_4:-68380165 None:intergenic
TGAGACTGCAGAGGCGTTGG+GGG 0.605085 1_4:+68380289 Msa0180480:CDS
GAGTATGATGTGTGGACTCA+GGG 0.611655 1_4:+68381786 Msa0180480:CDS
GGTTCATGCTGCGGTATCTG+TGG 0.615364 1_4:+68380133 Msa0180480:CDS
CTCACCGCTGAAGCTACTAT+GGG 0.618283 1_4:-68380676 None:intergenic
ACCATAGAAGAAAACATCAC+CGG 0.620032 1_4:+68379029 Msa0180480:CDS
CAGTACGGCCGTGGAAACAA+CGG 0.622108 1_4:+68379984 Msa0180480:intron
AAGAGAATAGAAGAGCAGAG+AGG 0.624385 1_4:-68378690 None:intergenic
GAACGTGAGAGAAACTCCAT+TGG 0.627617 1_4:-68378933 None:intergenic
GGCTGCAACATTGAAAGCGA+GGG 0.631800 1_4:+68380569 Msa0180480:CDS
CAATGCCCAGGTTCATGCTG+CGG 0.633356 1_4:+68380124 Msa0180480:CDS
GGAACATGGAAGAGTGAAGT+GGG 0.633559 1_4:-68378887 None:intergenic
TTTGATCAATGATAAAGGGG+GGG 0.639470 1_4:+68381961 Msa0180480:three_prime_UTR
GGGAGACTCTCACACAGTAG+TGG 0.643580 1_4:+68379304 Msa0180480:CDS
ATCTTGGGAAATATGCATTG+GGG 0.649049 1_4:+68382033 Msa0180480:three_prime_UTR
GGACGCCATTTGCTGGAAGG+CGG 0.651970 1_4:+68381690 Msa0180480:CDS
TGGGTTTAAGGAAACAGATG+AGG 0.652226 1_4:-68379072 None:intergenic
GGAACGGGAACACCTTGCTG+CGG 0.652259 1_4:+68380313 Msa0180480:CDS
TTCCTGTGGAGAGAAGTTTG+GGG 0.655019 1_4:+68380625 Msa0180480:CDS
CGGAGTTAACCACCGCAGCA+AGG 0.656849 1_4:-68380325 None:intergenic
GTCTGGGTCTGGAAAAGACG+AGG 0.656862 1_4:+68380205 Msa0180480:CDS
CAAATGGCGTCCCGTCCAAG+CGG 0.661319 1_4:-68381679 None:intergenic
AGATACCGCAGCATGAACCT+GGG 0.662936 1_4:-68380129 None:intergenic
AGTTCCCATAGTAGCTTCAG+CGG 0.663806 1_4:+68380672 Msa0180480:CDS
CTGGGTGGCAGACCACCTGG+TGG 0.677295 1_4:+68380029 Msa0180480:CDS
TATTGCAGCAGTGATTCCTG+TGG 0.684636 1_4:+68380611 Msa0180480:CDS
AGCTTAAATAGTTATCTGGG+TGG 0.684648 1_4:+68380014 Msa0180480:CDS
GGAGAAAGCGAATAGTGACT+CGG 0.696370 1_4:+68380226 Msa0180480:CDS
TGTTGTTGTAGCTTTGCGTG+GGG 0.698828 1_4:+68380548 Msa0180480:intron
TCAGTGTGTTGAGACTGCAG+AGG 0.701979 1_4:+68380280 Msa0180480:CDS
ATCAAAGAGAGTATGATGTG+TGG 0.717389 1_4:+68381778 Msa0180480:CDS
GGATTGAAAACATTATTGCG+TGG 0.721694 1_4:+68381732 Msa0180480:CDS
TACGGCCGTGGAAACAACGG+CGG 0.736881 1_4:+68379987 Msa0180480:CDS
AGCAGATCTAACATTCACGG+CGG 0.776495 1_4:-68380345 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATAATTAATTTAAT+GGG - chr1_4:68379487-68379506 None:intergenic 0.0%
!! TAAATTAATAATTAATTTAA+TGG - chr1_4:68379488-68379507 None:intergenic 0.0%
!! GAAGAAAAAAAATAAAAAAA+AGG - chr1_4:68379196-68379215 None:intergenic 10.0%
!!! TTTTTATTTTTTTTCTTCTT+CGG + chr1_4:68379198-68379217 Msa0180480:intron 10.0%
!! TATTAATTAGTAATTTACAT+TGG - chr1_4:68379442-68379461 None:intergenic 10.0%
!!! AATTTAATGTAAATTTTTAG+AGG + chr1_4:68380873-68380892 Msa0180480:intron 10.0%
!!! TTTTTTTTTGTTGTAATAAA+TGG - chr1_4:68381053-68381072 None:intergenic 10.0%
!!! TAATTTTTGTTTTGTTTTGT+AGG + chr1_4:68379252-68379271 Msa0180480:intron 15.0%
!! TTTGTTCAAATTAATTACAA+AGG + chr1_4:68379811-68379830 Msa0180480:intron 15.0%
!! ATGATAAAAACAAAATTTCA+AGG + chr1_4:68380424-68380443 Msa0180480:intron 15.0%
!!! ATGAAATATTTTCATGTAAA+TGG + chr1_4:68380821-68380840 Msa0180480:intron 15.0%
!! ATATATAAACAAAATGAATC+AGG + chr1_4:68381184-68381203 Msa0180480:CDS 15.0%
!! TAATTATTTAACAACAGATT+TGG + chr1_4:68381535-68381554 Msa0180480:intron 15.0%
!! TAATTAGTAATTTACATTGG+AGG - chr1_4:68379439-68379458 None:intergenic 20.0%
!! CAAAGTTTACTAAAAATAGT+GGG - chr1_4:68379572-68379591 None:intergenic 20.0%
!! ACAAAGTTTACTAAAAATAG+TGG - chr1_4:68379573-68379592 None:intergenic 20.0%
!!! TGTAATTTAGGACAAATTTT+GGG - chr1_4:68379693-68379712 None:intergenic 20.0%
!! TATATTTCTTATTGTGTGTT+TGG + chr1_4:68380788-68380807 Msa0180480:intron 20.0%
!!! ATAAAAGCACAATATTGTTA+AGG - chr1_4:68381230-68381249 None:intergenic 20.0%
!! TAATCAGTCACTTAATTATT+TGG + chr1_4:68381267-68381286 Msa0180480:intron 20.0%
!! AATCAGTCACTTAATTATTT+GGG + chr1_4:68381268-68381287 Msa0180480:intron 20.0%
!! ATGAAAAAGTTATATGAAGT+GGG + chr1_4:68381327-68381346 Msa0180480:intron 20.0%
!!! TTCACATAAAGAATTTTCAA+AGG - chr1_4:68381418-68381437 None:intergenic 20.0%
!! TTTGAAAATTCTTTATGTGA+AGG + chr1_4:68381417-68381436 Msa0180480:intron 20.0%
!!! ACTCTTTTTCTTTTTCTTAA+TGG - chr1_4:68381479-68381498 None:intergenic 20.0%
!! CTGTAAATTCAAAACATAAA+GGG - chr1_4:68381629-68381648 None:intergenic 20.0%
!! TCTGTAAATTCAAAACATAA+AGG - chr1_4:68381630-68381649 None:intergenic 20.0%
!!! CTATAGATCTTTTTGATATA+TGG + chr1_4:68381932-68381951 Msa0180480:three_prime_UTR 20.0%
!! AAAATGAAAAATGAGTATCT+TGG + chr1_4:68382138-68382157 Msa0180480:three_prime_UTR 20.0%
!!! TGAAAATCTAGACTTTTTTA+AGG - chr1_4:68382275-68382294 None:intergenic 20.0%
!!! AGGTTTCAGTCTTATTAAAA+AGG - chr1_4:68378614-68378633 None:intergenic 25.0%
!!! TTTTTGTTTTGTTTTGTAGG+AGG + chr1_4:68379255-68379274 Msa0180480:intron 25.0%
!!! ATGTATTTGTTTTGTTTACC+TGG + chr1_4:68379623-68379642 Msa0180480:intron 25.0%
!!! CTGTAATTTAGGACAAATTT+TGG - chr1_4:68379694-68379713 None:intergenic 25.0%
! AAAATTGTACGCTGTAATTT+AGG - chr1_4:68379705-68379724 None:intergenic 25.0%
! ACGAAAAGAATAAATCATTG+TGG - chr1_4:68379785-68379804 None:intergenic 25.0%
!!! TTTTGTTCTTGTTATGAACA+AGG + chr1_4:68379846-68379865 Msa0180480:intron 25.0%
!! GGGGAATTTTTATTGAATAA+TGG + chr1_4:68379889-68379908 Msa0180480:intron 25.0%
! TGTAAGCTTAAATAGTTATC+TGG + chr1_4:68380010-68380029 Msa0180480:CDS 25.0%
! GTAAGCTTAAATAGTTATCT+GGG + chr1_4:68380011-68380030 Msa0180480:CDS 25.0%
!!! CATTTTCTGAAAATGTGAAT+TGG + chr1_4:68380453-68380472 Msa0180480:intron 25.0%
!! AGTTTGTATGTTGATGTTTT+TGG + chr1_4:68380495-68380514 Msa0180480:intron 25.0%
!!! TAATTGATTAGCTTTAAGGT+AGG - chr1_4:68380913-68380932 None:intergenic 25.0%
! ACCTTAAAGCTAATCAATTA+TGG + chr1_4:68380913-68380932 Msa0180480:intron 25.0%
!!! TCCATAATTGATTAGCTTTA+AGG - chr1_4:68380917-68380936 None:intergenic 25.0%
! TTAAAGCTAATCAATTATGG+AGG + chr1_4:68380916-68380935 Msa0180480:intron 25.0%
!!! ATATTGGTTTTAGTGTTTGA+TGG - chr1_4:68380964-68380983 None:intergenic 25.0%
! TGATTCTTAAGACTTGATAT+TGG - chr1_4:68380980-68380999 None:intergenic 25.0%
!!! TTTTTGTTGTAATAAATGGC+AGG - chr1_4:68381049-68381068 None:intergenic 25.0%
! ATAAGACTAGAAAATGGAAA+GGG - chr1_4:68381089-68381108 None:intergenic 25.0%
! AACATCATAAGACTAGAAAA+TGG - chr1_4:68381095-68381114 None:intergenic 25.0%
! CATGAAAAAGTTATATGAAG+TGG + chr1_4:68381326-68381345 Msa0180480:intron 25.0%
! TGAAAAAGTTATATGAAGTG+GGG + chr1_4:68381328-68381347 Msa0180480:intron 25.0%
!! TTACTCTAAAAATGAAGAGT+AGG + chr1_4:68381440-68381459 Msa0180480:CDS 25.0%
! TTATTTAACAACAGATTTGG+AGG + chr1_4:68381538-68381557 Msa0180480:intron 25.0%
! AATTCAAAACATAAAGGGAA+TGG - chr1_4:68381624-68381643 None:intergenic 25.0%
!!! ATGTTTTGAATTTACAGATG+TGG + chr1_4:68381632-68381651 Msa0180480:intron 25.0%
! AAAAAGATCTATAGTGCTAA+GGG - chr1_4:68381926-68381945 None:intergenic 25.0%
!! TAGATCTTTTTGATATATGG+TGG + chr1_4:68381935-68381954 Msa0180480:three_prime_UTR 25.0%
!! AGATCTTTTTGATATATGGT+GGG + chr1_4:68381936-68381955 Msa0180480:three_prime_UTR 25.0%
! TGAAAAGAACAATACAACTA+TGG - chr1_4:68382102-68382121 None:intergenic 25.0%
!! TGTTCTTTTCATCACTATTA+TGG + chr1_4:68382111-68382130 Msa0180480:three_prime_UTR 25.0%
! CAATATAAAATTATGGGCTT+TGG + chr1_4:68382306-68382325 Msa0180480:three_prime_UTR 25.0%
TCTGTTCATACTATTGTAGT+AGG + chr1_4:68378560-68378579 Msa0180480:five_prime_UTR 30.0%
AGAAGAGAATAGAAGATTGA+GGG - chr1_4:68378732-68378751 None:intergenic 30.0%
TGAAACCACTCAAATGATAA+TGG + chr1_4:68379112-68379131 Msa0180480:CDS 30.0%
! TTGTGTTATAGATGGACTTA+CGG - chr1_4:68379156-68379175 None:intergenic 30.0%
TATGCATGTTGTGTTATAGA+TGG - chr1_4:68379164-68379183 None:intergenic 30.0%
! CGATTTTCTGTTAGATTGTA+GGG - chr1_4:68379650-68379669 None:intergenic 30.0%
! ACGATTTTCTGTTAGATTGT+AGG - chr1_4:68379651-68379670 None:intergenic 30.0%
CTAACAGAAAATCGTCAAAT+TGG + chr1_4:68379656-68379675 Msa0180480:intron 30.0%
!! AATTTAGGACAAATTTTGGG+TGG - chr1_4:68379690-68379709 None:intergenic 30.0%
GAATAAATCATTGTGGCATA+AGG - chr1_4:68379778-68379797 None:intergenic 30.0%
AATAGAAACAAACCAAGGAA+GGG + chr1_4:68379869-68379888 Msa0180480:intron 30.0%
TGTACCTGAAGATAATTTCT+CGG + chr1_4:68380701-68380720 Msa0180480:CDS 30.0%
CATAAGACTAGAAAATGGAA+AGG - chr1_4:68381090-68381109 None:intergenic 30.0%
GACTGATTATTGAGTACTAA+AGG - chr1_4:68381256-68381275 None:intergenic 30.0%
GAAAAAGTTATATGAAGTGG+GGG + chr1_4:68381329-68381348 Msa0180480:intron 30.0%
TTCCATTTAAGGATTTGTGA+GGG + chr1_4:68381570-68381589 Msa0180480:intron 30.0%
!! TCTATTTCTGTTGTTCTTCT+CGG - chr1_4:68381838-68381857 None:intergenic 30.0%
CAAAAAGATCTATAGTGCTA+AGG - chr1_4:68381927-68381946 None:intergenic 30.0%
! GATCTTTTTGATATATGGTG+GGG + chr1_4:68381937-68381956 Msa0180480:three_prime_UTR 30.0%
!! GGGTTTTGATCAATGATAAA+GGG + chr1_4:68381957-68381976 Msa0180480:three_prime_UTR 30.0%
!! GGTTTTGATCAATGATAAAG+GGG + chr1_4:68381958-68381977 Msa0180480:three_prime_UTR 30.0%
!! GTTTTGATCAATGATAAAGG+GGG + chr1_4:68381959-68381978 Msa0180480:three_prime_UTR 30.0%
! TTTTGATCAATGATAAAGGG+GGG + chr1_4:68381960-68381979 Msa0180480:three_prime_UTR 30.0%
AGCTAAAAACTAAAGGCAAA+AGG + chr1_4:68381988-68382007 Msa0180480:three_prime_UTR 30.0%
TAATCTTGGGAAATATGCAT+TGG + chr1_4:68382031-68382050 Msa0180480:three_prime_UTR 30.0%
AATCTTGGGAAATATGCATT+GGG + chr1_4:68382032-68382051 Msa0180480:three_prime_UTR 30.0%
ATACAACTATGGTTCACATT+GGG - chr1_4:68382091-68382110 None:intergenic 30.0%
AATACAACTATGGTTCACAT+TGG - chr1_4:68382092-68382111 None:intergenic 30.0%
AAAAATGAGTATCTTGGACT+AGG + chr1_4:68382144-68382163 Msa0180480:three_prime_UTR 30.0%
AAAATGAGTATCTTGGACTA+GGG + chr1_4:68382145-68382164 Msa0180480:three_prime_UTR 30.0%
AATGGGGAAAGAATCATATT+AGG + chr1_4:68382181-68382200 Msa0180480:three_prime_UTR 30.0%
TGACTGACACACAATACAAT+CGG + chr1_4:68378638-68378657 Msa0180480:five_prime_UTR 35.0%
GAGAAGAGAATAGAAGATTG+AGG - chr1_4:68378733-68378752 None:intergenic 35.0%
ATAAAGCTCAAACCCATTTC+TGG + chr1_4:68378856-68378875 Msa0180480:CDS 35.0%
! TCTTCTATGGTGGTGTTTAT+AGG - chr1_4:68379020-68379039 None:intergenic 35.0%
ACCATAGAAGAAAACATCAC+CGG + chr1_4:68379029-68379048 Msa0180480:CDS 35.0%
! AGCAAAGGAAAATGGGTTTA+AGG - chr1_4:68379087-68379106 None:intergenic 35.0%
TATCATTTGAGTGGTTTCAG+AGG - chr1_4:68379111-68379130 None:intergenic 35.0%
ACAGGACAACTATCTGTTAA+AGG - chr1_4:68379331-68379350 None:intergenic 35.0%
!! TTGATATCGTCGATTTCAGA+TGG - chr1_4:68379358-68379377 None:intergenic 35.0%
! ATCTGAAATCGACGATATCA+AGG + chr1_4:68379357-68379376 Msa0180480:CDS 35.0%
CAAGGAATAGAAACAAACCA+AGG + chr1_4:68379864-68379883 Msa0180480:intron 35.0%
GAATAGAAACAAACCAAGGA+AGG + chr1_4:68379868-68379887 Msa0180480:intron 35.0%
ATAGAAACAAACCAAGGAAG+GGG + chr1_4:68379870-68379889 Msa0180480:intron 35.0%
CAATAAAAATTCCCCTTCCT+TGG - chr1_4:68379884-68379903 None:intergenic 35.0%
GTATTGTAACCCCAAAAACA+TGG + chr1_4:68379941-68379960 Msa0180480:intron 35.0%
! TGCATAGAAGCCATGTTTTT+GGG - chr1_4:68379954-68379973 None:intergenic 35.0%
! ATGCATAGAAGCCATGTTTT+TGG - chr1_4:68379955-68379974 None:intergenic 35.0%
AGCTTAAATAGTTATCTGGG+TGG + chr1_4:68380014-68380033 Msa0180480:CDS 35.0%
AAGATGGCTTAAGGATAGAA+AGG + chr1_4:68380073-68380092 Msa0180480:CDS 35.0%
GGATAGAAAGGAGAAGAAAA+AGG + chr1_4:68380085-68380104 Msa0180480:CDS 35.0%
AGAAGAAAAAGGAAGAAGCA+AGG + chr1_4:68380096-68380115 Msa0180480:CDS 35.0%
GAAGAAAAAGGAAGAAGCAA+GGG + chr1_4:68380097-68380116 Msa0180480:CDS 35.0%
!!! TATGTTGATGTTTTTGGCGT+CGG + chr1_4:68380501-68380520 Msa0180480:intron 35.0%
GTACCTGAAGATAATTTCTC+GGG + chr1_4:68380702-68380721 Msa0180480:CDS 35.0%
CATTCGCCTTATCATACTAA+AGG - chr1_4:68381357-68381376 None:intergenic 35.0%
TTTAACAACAGATTTGGAGG+TGG + chr1_4:68381541-68381560 Msa0180480:intron 35.0%
TTAACAACAGATTTGGAGGT+GGG + chr1_4:68381542-68381561 Msa0180480:intron 35.0%
GTTCCATTTAAGGATTTGTG+AGG + chr1_4:68381569-68381588 Msa0180480:intron 35.0%
TCCATTTAAGGATTTGTGAG+GGG + chr1_4:68381571-68381590 Msa0180480:intron 35.0%
GGATTGAAAACATTATTGCG+TGG + chr1_4:68381732-68381751 Msa0180480:CDS 35.0%
! ATCAAAGAGAGTATGATGTG+TGG + chr1_4:68381778-68381797 Msa0180480:CDS 35.0%
!! GGGGTTTTGATCAATGATAA+AGG + chr1_4:68381956-68381975 Msa0180480:three_prime_UTR 35.0%
TTTGATCAATGATAAAGGGG+GGG + chr1_4:68381961-68381980 Msa0180480:three_prime_UTR 35.0%
GGGTGTAAGCTAAAAACTAA+AGG + chr1_4:68381981-68382000 Msa0180480:three_prime_UTR 35.0%
AAGATTAAAGTAACCCCAAC+TGG - chr1_4:68382018-68382037 None:intergenic 35.0%
! AGTTGGGGTTACTTTAATCT+TGG + chr1_4:68382017-68382036 Msa0180480:three_prime_UTR 35.0%
! GTTGGGGTTACTTTAATCTT+GGG + chr1_4:68382018-68382037 Msa0180480:three_prime_UTR 35.0%
ATCTTGGGAAATATGCATTG+GGG + chr1_4:68382033-68382052 Msa0180480:three_prime_UTR 35.0%
! GAAATATGCATTGGGGTATT+TGG + chr1_4:68382040-68382059 Msa0180480:three_prime_UTR 35.0%
TAGGGAACAGTCAAAAAGAA+TGG + chr1_4:68382163-68382182 Msa0180480:three_prime_UTR 35.0%
AGGGAACAGTCAAAAAGAAT+GGG + chr1_4:68382164-68382183 Msa0180480:three_prime_UTR 35.0%
GGGAAAGAATCATATTAGGA+GGG + chr1_4:68382185-68382204 Msa0180480:three_prime_UTR 35.0%
AATGTGCAAACAACACAGAT+AGG - chr1_4:68382242-68382261 None:intergenic 35.0%
!! ATCTGTGTTGTTTGCACATT+TGG + chr1_4:68382242-68382261 Msa0180480:three_prime_UTR 35.0%
GATTGTATTGTGTGTCAGTC+AGG - chr1_4:68378639-68378658 None:intergenic 40.0%
AAGAGAATAGAAGAGCAGAG+AGG - chr1_4:68378693-68378712 None:intergenic 40.0%
! AGAAGAAGAGGAGAGAGTTT+TGG - chr1_4:68378985-68379004 None:intergenic 40.0%
AGGTTTGGAAGAAGAAGAAG+AGG - chr1_4:68378997-68379016 None:intergenic 40.0%
! TCTATGGTGGTGTTTATAGG+AGG - chr1_4:68379017-68379036 None:intergenic 40.0%
! GGTGATGTTTTCTTCTATGG+TGG - chr1_4:68379030-68379049 None:intergenic 40.0%
! TCCGGTGATGTTTTCTTCTA+TGG - chr1_4:68379033-68379052 None:intergenic 40.0%
AGATGAGGAGGTTTCTTCTT+CGG - chr1_4:68379060-68379079 None:intergenic 40.0%
GTTTAAGGAAACAGATGAGG+AGG - chr1_4:68379072-68379091 None:intergenic 40.0%
TGGGTTTAAGGAAACAGATG+AGG - chr1_4:68379075-68379094 None:intergenic 40.0%
CAGAGGAAGCAAAGGAAAAT+GGG - chr1_4:68379094-68379113 None:intergenic 40.0%
TCAGAGGAAGCAAAGGAAAA+TGG - chr1_4:68379095-68379114 None:intergenic 40.0%
GCGTTCCATTATCATTTGAG+TGG - chr1_4:68379120-68379139 None:intergenic 40.0%
TCGATTTCAGATGGTGAAAC+AGG - chr1_4:68379349-68379368 None:intergenic 40.0%
TATCCCTCTCTCTGCATTAA+TGG + chr1_4:68379730-68379749 Msa0180480:intron 40.0%
CAACCATTAATGCAGAGAGA+GGG - chr1_4:68379736-68379755 None:intergenic 40.0%
TCAACCATTAATGCAGAGAG+AGG - chr1_4:68379737-68379756 None:intergenic 40.0%
GTTGAAGATTGTGCAGATGA+AGG + chr1_4:68379752-68379771 Msa0180480:intron 40.0%
!! GCATAGAAGCCATGTTTTTG+GGG - chr1_4:68379953-68379972 None:intergenic 40.0%
ACCAGCAGATCTAACATTCA+CGG - chr1_4:68380351-68380370 None:intergenic 40.0%
ATTCCTGTGGAGAGAAGTTT+GGG + chr1_4:68380624-68380643 Msa0180480:CDS 40.0%
GTACCCGAGAAATTATCTTC+AGG - chr1_4:68380708-68380727 None:intergenic 40.0%
AGTAGAGAATTACTTGCCAG+AGG + chr1_4:68380735-68380754 Msa0180480:intron 40.0%
ATTGAATCCAAACACGCACT+TGG + chr1_4:68381017-68381036 Msa0180480:intron 40.0%
GTAAAATCCAAGTGCGTGTT+TGG - chr1_4:68381027-68381046 None:intergenic 40.0%
!! TTGATTCCTGAGTTTTGTGC+AGG + chr1_4:68381134-68381153 Msa0180480:intron 40.0%
! ATTTTGAGCTCCTGTTCTGA+GGG + chr1_4:68381857-68381876 Msa0180480:exon 40.0%
GGGAACAGTCAAAAAGAATG+GGG + chr1_4:68382165-68382184 Msa0180480:three_prime_UTR 40.0%
GGGGAAAGAATCATATTAGG+AGG + chr1_4:68382184-68382203 Msa0180480:three_prime_UTR 40.0%
TATTGTGTGTCAGTCAGGTC+AGG - chr1_4:68378634-68378653 None:intergenic 45.0%
GGAACATGGAAGAGTGAAGT+GGG - chr1_4:68378890-68378909 None:intergenic 45.0%
! ATTGGTGCTTGTGGTGTTTC+TGG - chr1_4:68378918-68378937 None:intergenic 45.0%
AGAAACACCACAAGCACCAA+TGG + chr1_4:68378917-68378936 Msa0180480:CDS 45.0%
! AGAAACTCCATTGGTGCTTG+TGG - chr1_4:68378927-68378946 None:intergenic 45.0%
GAACGTGAGAGAAACTCCAT+TGG - chr1_4:68378936-68378955 None:intergenic 45.0%
TGGAGTTTCTCTCACGTTCA+TGG + chr1_4:68378937-68378956 Msa0180480:CDS 45.0%
GGTGGTGTTTATAGGAGGTT+TGG - chr1_4:68379012-68379031 None:intergenic 45.0%
GGTTTCTTCTTCGGTTTCTC+CGG - chr1_4:68379051-68379070 None:intergenic 45.0%
AGTGGTTTCAGAGGAAGCAA+AGG - chr1_4:68379102-68379121 None:intergenic 45.0%
TCTGTGTCTCCAAGAACTTC+AGG + chr1_4:68379283-68379302 Msa0180480:CDS 45.0%
CTGTGTCTCCAAGAACTTCA+GGG + chr1_4:68379284-68379303 Msa0180480:CDS 45.0%
TCTGTTAGATTGTAGGGACC+AGG - chr1_4:68379644-68379663 None:intergenic 45.0%
ATGCATTCTTCCCTGCAGTA+CGG + chr1_4:68379969-68379988 Msa0180480:intron 45.0%
GGAGAAAGCGAATAGTGACT+CGG + chr1_4:68380226-68380245 Msa0180480:CDS 45.0%
AGCAGATCTAACATTCACGG+CGG - chr1_4:68380348-68380367 None:intergenic 45.0%
! TGTGTTGTTGTAGCTTTGCG+TGG + chr1_4:68380546-68380565 Msa0180480:intron 45.0%
! GTGTTGTTGTAGCTTTGCGT+GGG + chr1_4:68380547-68380566 Msa0180480:intron 45.0%
! TGTTGTTGTAGCTTTGCGTG+GGG + chr1_4:68380548-68380567 Msa0180480:intron 45.0%
!! ATTGAAAGCGAGGGCATTGA+AGG + chr1_4:68380578-68380597 Msa0180480:CDS 45.0%
TATTGCAGCAGTGATTCCTG+TGG + chr1_4:68380611-68380630 Msa0180480:CDS 45.0%
GATTCCTGTGGAGAGAAGTT+TGG + chr1_4:68380623-68380642 Msa0180480:CDS 45.0%
TTCCTGTGGAGAGAAGTTTG+GGG + chr1_4:68380625-68380644 Msa0180480:CDS 45.0%
!! GCTTCTGGTGGTAATGGTAA+TGG + chr1_4:68380648-68380667 Msa0180480:CDS 45.0%
AGTTCCCATAGTAGCTTCAG+CGG + chr1_4:68380672-68380691 Msa0180480:CDS 45.0%
CTTCAGAAGTTCACAACCTC+TGG - chr1_4:68380754-68380773 None:intergenic 45.0%
AGATCACCTGCACAAAACTC+AGG - chr1_4:68381143-68381162 None:intergenic 45.0%
TTTGTGCAGGTGATCTTCAC+TGG + chr1_4:68381147-68381166 Msa0180480:intron 45.0%
! GGGGCACCTTTAGTATGATA+AGG + chr1_4:68381348-68381367 Msa0180480:intron 45.0%
!! GGTGGGTCTTGTTCCATTTA+AGG + chr1_4:68381559-68381578 Msa0180480:intron 45.0%
GCCCCTCACAAATCCTTAAA+TGG - chr1_4:68381575-68381594 None:intergenic 45.0%
TTGTGAGGGGCAAGATCAAA+AGG + chr1_4:68381584-68381603 Msa0180480:intron 45.0%
TGTGAGGGGCAAGATCAAAA+GGG + chr1_4:68381585-68381604 Msa0180480:intron 45.0%
TGATCAAAGATATGCCCGCT+TGG + chr1_4:68381664-68381683 Msa0180480:CDS 45.0%
AGAGTATGATGTGTGGACTC+AGG + chr1_4:68381785-68381804 Msa0180480:CDS 45.0%
GAGTATGATGTGTGGACTCA+GGG + chr1_4:68381786-68381805 Msa0180480:CDS 45.0%
! GATTTTGAGCTCCTGTTCTG+AGG + chr1_4:68381856-68381875 Msa0180480:exon 45.0%
!! TTTTGAGCTCCTGTTCTGAG+GGG + chr1_4:68381858-68381877 Msa0180480:exon 45.0%
! TTCTGAGGGGGGAGAAATTT+AGG + chr1_4:68381871-68381890 Msa0180480:three_prime_UTR 45.0%
GGGGGAGAAATTTAGGCAAT+GGG + chr1_4:68381878-68381897 Msa0180480:three_prime_UTR 45.0%
GGGGAGAAATTTAGGCAATG+GGG + chr1_4:68381879-68381898 Msa0180480:three_prime_UTR 45.0%
GGGAGAAATTTAGGCAATGG+GGG + chr1_4:68381880-68381899 Msa0180480:three_prime_UTR 45.0%
! AAGGCAAAAGGTATGCCAGT+TGG + chr1_4:68382000-68382019 Msa0180480:three_prime_UTR 45.0%
! AGGCAAAAGGTATGCCAGTT+GGG + chr1_4:68382001-68382020 Msa0180480:three_prime_UTR 45.0%
! AAATTATGGGCTTTGGCTCC+TGG + chr1_4:68382313-68382332 Msa0180480:three_prime_UTR 45.0%
!! ATTAATACAATATAAAATTA+TGG + chr1_4:68382299-68382318 Msa0180480:three_prime_UTR 5.0%
!! TTAATACAATATAAAATTAT+GGG + chr1_4:68382300-68382319 Msa0180480:three_prime_UTR 5.0%
ATGGAAGAGTGAAGTGGGTC+GGG - chr1_4:68378885-68378904 None:intergenic 50.0%
CATGGAAGAGTGAAGTGGGT+CGG - chr1_4:68378886-68378905 None:intergenic 50.0%
CGGAACATGGAAGAGTGAAG+TGG - chr1_4:68378891-68378910 None:intergenic 50.0%
!! TGTTTCTGGTGGACGGAACA+TGG - chr1_4:68378904-68378923 None:intergenic 50.0%
!! CTTGTGGTGTTTCTGGTGGA+CGG - chr1_4:68378911-68378930 None:intergenic 50.0%
GAGAGTCTCCCTGAAGTTCT+TGG - chr1_4:68379295-68379314 None:intergenic 50.0%
! TTACACCGCCGTTGTTTCCA+CGG - chr1_4:68379995-68380014 None:intergenic 50.0%
GTGGTAAGACGGTTGGAAGA+TGG + chr1_4:68380057-68380076 Msa0180480:CDS 50.0%
GACGGTTGGAAGATGGCTTA+AGG + chr1_4:68380064-68380083 Msa0180480:CDS 50.0%
! AGCATGAACCTGGGCATTGT+GGG - chr1_4:68380123-68380142 None:intergenic 50.0%
AGATACCGCAGCATGAACCT+GGG - chr1_4:68380132-68380151 None:intergenic 50.0%
TGCAGCAATTGCAGCTACTG+CGG - chr1_4:68380171-68380190 None:intergenic 50.0%
! TTTTCCAGACCCAGACGAAG+CGG - chr1_4:68380201-68380220 None:intergenic 50.0%
! AGCGAATAGTGACTCGGCTT+TGG + chr1_4:68380232-68380251 Msa0180480:CDS 50.0%
! TTTGGCTTCTGCAGCAACGT+TGG + chr1_4:68380250-68380269 Msa0180480:CDS 50.0%
TCAGTGTGTTGAGACTGCAG+AGG + chr1_4:68380280-68380299 Msa0180480:CDS 50.0%
GCCGTGAATGTTAGATCTGC+TGG + chr1_4:68380347-68380366 Msa0180480:CDS 50.0%
TTAACTGCTGCTGCTGCAAC+AGG + chr1_4:68380383-68380402 Msa0180480:CDS 50.0%
GGCTGCAACATTGAAAGCGA+GGG + chr1_4:68380569-68380588 Msa0180480:CDS 50.0%
!! CGAGGGCATTGAAGGAAGTT+TGG + chr1_4:68380586-68380605 Msa0180480:CDS 50.0%
TCCTGTGGAGAGAAGTTTGG+GGG + chr1_4:68380626-68380645 Msa0180480:CDS 50.0%
CTCACCGCTGAAGCTACTAT+GGG - chr1_4:68380679-68380698 None:intergenic 50.0%
ATGAAGAGTAGGCACGTTGC+TGG + chr1_4:68381451-68381470 Msa0180480:CDS 50.0%
TGAAGAGTAGGCACGTTGCT+GGG + chr1_4:68381452-68381471 Msa0180480:CDS 50.0%
CAAAGATATGCCCGCTTGGA+CGG + chr1_4:68381668-68381687 Msa0180480:CDS 50.0%
AAAGATATGCCCGCTTGGAC+GGG + chr1_4:68381669-68381688 Msa0180480:CDS 50.0%
GGTGAGAATCGTCGCTACTT+TGG + chr1_4:68381711-68381730 Msa0180480:CDS 50.0%
GTTGTTCTTCTCGGCTGCAA+TGG - chr1_4:68381829-68381848 None:intergenic 50.0%
!! TTTGAGCTCCTGTTCTGAGG+GGG + chr1_4:68381859-68381878 Msa0180480:exon 50.0%
AATTTCTCCCCCCTCAGAAC+AGG - chr1_4:68381870-68381889 None:intergenic 50.0%
GGGGGGAGAAATTTAGGCAA+TGG + chr1_4:68381877-68381896 Msa0180480:three_prime_UTR 50.0%
TAGGCAATGGGGGACATACA+AGG + chr1_4:68381890-68381909 Msa0180480:three_prime_UTR 50.0%
GGGGGACATACAAGGATCTA+TGG + chr1_4:68381898-68381917 Msa0180480:three_prime_UTR 50.0%
! GGCAAAAGGTATGCCAGTTG+GGG + chr1_4:68382002-68382021 Msa0180480:three_prime_UTR 50.0%
GAGAGAGAGAGAGAGCGAGT+GGG - chr1_4:68378814-68378833 None:intergenic 55.0%
AGAGAGAGAGAGAGAGCGAG+TGG - chr1_4:68378815-68378834 None:intergenic 55.0%
CTCTCTCTCGCTCTCTCTCA+TGG + chr1_4:68378833-68378852 Msa0180480:intron 55.0%
TGGGTCGGGTCTCCAGAAAT+GGG - chr1_4:68378871-68378890 None:intergenic 55.0%
!! GGTGCTTGTGGTGTTTCTGG+TGG - chr1_4:68378915-68378934 None:intergenic 55.0%
GGGAGACTCTCACACAGTAG+TGG + chr1_4:68379304-68379323 Msa0180480:CDS 55.0%
CAGTACGGCCGTGGAAACAA+CGG + chr1_4:68379984-68380003 Msa0180480:intron 55.0%
!! TGGTGGTGGTGGTGGTAAGA+CGG + chr1_4:68380046-68380065 Msa0180480:CDS 55.0%
! CAGCATGAACCTGGGCATTG+TGG - chr1_4:68380124-68380143 None:intergenic 55.0%
CAATGCCCAGGTTCATGCTG+CGG + chr1_4:68380124-68380143 Msa0180480:CDS 55.0%
CAGATACCGCAGCATGAACC+TGG - chr1_4:68380133-68380152 None:intergenic 55.0%
GGTTCATGCTGCGGTATCTG+TGG + chr1_4:68380133-68380152 Msa0180480:CDS 55.0%
AGCAATTGCAGCTACTGCGG+CGG - chr1_4:68380168-68380187 None:intergenic 55.0%
GTCTGGGTCTGGAAAAGACG+AGG + chr1_4:68380205-68380224 Msa0180480:CDS 55.0%
! TTCTGCAGCAACGTTGGTGG+CGG + chr1_4:68380256-68380275 Msa0180480:CDS 55.0%
! TGTTGAGACTGCAGAGGCGT+TGG + chr1_4:68380286-68380305 Msa0180480:CDS 55.0%
!! GTTGAGACTGCAGAGGCGTT+GGG + chr1_4:68380287-68380306 Msa0180480:CDS 55.0%
!! TTGAGACTGCAGAGGCGTTG+GGG + chr1_4:68380288-68380307 Msa0180480:CDS 55.0%
GGGCTGCAACATTGAAAGCG+AGG + chr1_4:68380568-68380587 Msa0180480:CDS 55.0%
GAGAGAAGTTTGGGGGCTTC+TGG + chr1_4:68380633-68380652 Msa0180480:CDS 55.0%
AGAAGTTTGGGGGCTTCTGG+TGG + chr1_4:68380636-68380655 Msa0180480:CDS 55.0%
TTGGGGGCTTCTGGTGGTAA+TGG + chr1_4:68380642-68380661 Msa0180480:CDS 55.0%
GCTCACCGCTGAAGCTACTA+TGG - chr1_4:68380680-68380699 None:intergenic 55.0%
!! CTTCTGAAGCGCACACGCAA+AGG + chr1_4:68380765-68380784 Msa0180480:intron 55.0%
TCTCACCGCCTTCCAGCAAA+TGG - chr1_4:68381698-68381717 None:intergenic 55.0%
TCTCGGCTGCAATGGAAAGC+AGG - chr1_4:68381821-68381840 None:intergenic 55.0%
!! TTGAGCTCCTGTTCTGAGGG+GGG + chr1_4:68381860-68381879 Msa0180480:exon 55.0%
AGAGAGAGAGCGAGTGGGTG+AGG - chr1_4:68378809-68378828 None:intergenic 60.0%
GTGGGTCGGGTCTCCAGAAA+TGG - chr1_4:68378872-68378891 None:intergenic 60.0%
GTTTCCACGGCCGTACTGCA+GGG - chr1_4:68379982-68380001 None:intergenic 60.0%
TGTTTCCACGGCCGTACTGC+AGG - chr1_4:68379983-68380002 None:intergenic 60.0%
TACGGCCGTGGAAACAACGG+CGG + chr1_4:68379987-68380006 Msa0180480:CDS 60.0%
TATCTGGGTGGCAGACCACC+TGG + chr1_4:68380026-68380045 Msa0180480:CDS 60.0%
TTACCACCACCACCACCAGG+TGG - chr1_4:68380044-68380063 None:intergenic 60.0%
GTCTTACCACCACCACCACC+AGG - chr1_4:68380047-68380066 None:intergenic 60.0%
!! GGTGGTGGTGGTAAGACGGT+TGG + chr1_4:68380050-68380069 Msa0180480:CDS 60.0%
GGCTTCTGCAGCAACGTTGG+TGG + chr1_4:68380253-68380272 Msa0180480:CDS 60.0%
!! TGAGACTGCAGAGGCGTTGG+GGG + chr1_4:68380289-68380308 Msa0180480:CDS 60.0%
GGAACGGGAACACCTTGCTG+CGG + chr1_4:68380313-68380332 Msa0180480:CDS 60.0%
CGGAGTTAACCACCGCAGCA+AGG - chr1_4:68380328-68380347 None:intergenic 60.0%
GCCCCCAAACTTCTCTCCAC+AGG - chr1_4:68380630-68380649 None:intergenic 60.0%
AAATGGCGTCCCGTCCAAGC+GGG - chr1_4:68381681-68381700 None:intergenic 60.0%
CAAATGGCGTCCCGTCCAAG+CGG - chr1_4:68381682-68381701 None:intergenic 60.0%
TTGGACGGGACGCCATTTGC+TGG + chr1_4:68381683-68381702 Msa0180480:CDS 60.0%
! ACGGGACGCCATTTGCTGGA+AGG + chr1_4:68381687-68381706 Msa0180480:CDS 60.0%
! GGACGCCATTTGCTGGAAGG+CGG + chr1_4:68381690-68381709 Msa0180480:CDS 60.0%
GCGAGTGGGTGAGGAGGAGT+TGG - chr1_4:68378800-68378819 None:intergenic 65.0%
GAGAGAGCGAGTGGGTGAGG+AGG - chr1_4:68378806-68378825 None:intergenic 65.0%
TCTTCCCTGCAGTACGGCCG+TGG + chr1_4:68379975-68379994 Msa0180480:intron 65.0%
!! AGACCACCTGGTGGTGGTGG+TGG + chr1_4:68380038-68380057 Msa0180480:CDS 65.0%
AGCAAGGGCCCACAATGCCC+AGG + chr1_4:68380112-68380131 Msa0180480:CDS 65.0%
TCCAGACCCAGACGAAGCGG+CGG - chr1_4:68380198-68380217 None:intergenic 65.0%
ACGGGAACACCTTGCTGCGG+TGG + chr1_4:68380316-68380335 Msa0180480:CDS 65.0%
CTGGGTGGCAGACCACCTGG+TGG + chr1_4:68380029-68380048 Msa0180480:CDS 70.0%
GGTGGCAGACCACCTGGTGG+TGG + chr1_4:68380032-68380051 Msa0180480:CDS 70.0%
!! GGCAGACCACCTGGTGGTGG+TGG + chr1_4:68380035-68380054 Msa0180480:CDS 70.0%
CAGCCACCGCCGCTTCGTCT+GGG + chr1_4:68380189-68380208 Msa0180480:CDS 70.0%
AGACCCAGACGAAGCGGCGG+TGG - chr1_4:68380195-68380214 None:intergenic 70.0%
ACCGCCGCTTCGTCTGGGTC+TGG + chr1_4:68380194-68380213 Msa0180480:CDS 70.0%
!! GACTGCAGAGGCGTTGGGGG+CGG + chr1_4:68380292-68380311 Msa0180480:CDS 70.0%
!! CAGAGGCGTTGGGGGCGGAA+CGG + chr1_4:68380297-68380316 Msa0180480:CDS 70.0%
!! AGAGGCGTTGGGGGCGGAAC+GGG + chr1_4:68380298-68380317 Msa0180480:CDS 70.0%
GCAGCCACCGCCGCTTCGTC+TGG + chr1_4:68380188-68380207 Msa0180480:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 68378536 68382336 68378536 ID=Msa0180480;Name=Msa0180480
chr1_4 mRNA 68378536 68382336 68378536 ID=Msa0180480-mRNA-1;Parent=Msa0180480;Name=Msa0180480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=249|0.85|0.87|1|0.85|0.75|8|473|437
chr1_4 exon 68378536 68378775 68378536 ID=Msa0180480-mRNA-1:exon:22555;Parent=Msa0180480-mRNA-1
chr1_4 exon 68378843 68379154 68378843 ID=Msa0180480-mRNA-1:exon:22556;Parent=Msa0180480-mRNA-1
chr1_4 exon 68379274 68379378 68379274 ID=Msa0180480-mRNA-1:exon:22557;Parent=Msa0180480-mRNA-1
chr1_4 exon 68379987 68380404 68379987 ID=Msa0180480-mRNA-1:exon:22558;Parent=Msa0180480-mRNA-1
chr1_4 exon 68380559 68380723 68380559 ID=Msa0180480-mRNA-1:exon:22559;Parent=Msa0180480-mRNA-1
chr1_4 exon 68381156 68381205 68381156 ID=Msa0180480-mRNA-1:exon:22560;Parent=Msa0180480-mRNA-1
chr1_4 exon 68381439 68381496 68381439 ID=Msa0180480-mRNA-1:exon:22561;Parent=Msa0180480-mRNA-1
chr1_4 exon 68381649 68382336 68381649 ID=Msa0180480-mRNA-1:exon:22562;Parent=Msa0180480-mRNA-1
chr1_4 five_prime_UTR 68378536 68378775 68378536 ID=Msa0180480-mRNA-1:five_prime_utr;Parent=Msa0180480-mRNA-1
chr1_4 five_prime_UTR 68378843 68378851 68378843 ID=Msa0180480-mRNA-1:five_prime_utr;Parent=Msa0180480-mRNA-1
chr1_4 CDS 68378852 68379154 68378852 ID=Msa0180480-mRNA-1:cds;Parent=Msa0180480-mRNA-1
chr1_4 CDS 68379274 68379378 68379274 ID=Msa0180480-mRNA-1:cds;Parent=Msa0180480-mRNA-1
chr1_4 CDS 68379987 68380404 68379987 ID=Msa0180480-mRNA-1:cds;Parent=Msa0180480-mRNA-1
chr1_4 CDS 68380559 68380723 68380559 ID=Msa0180480-mRNA-1:cds;Parent=Msa0180480-mRNA-1
chr1_4 CDS 68381156 68381205 68381156 ID=Msa0180480-mRNA-1:cds;Parent=Msa0180480-mRNA-1
chr1_4 CDS 68381439 68381496 68381439 ID=Msa0180480-mRNA-1:cds;Parent=Msa0180480-mRNA-1
chr1_4 CDS 68381649 68381863 68381649 ID=Msa0180480-mRNA-1:cds;Parent=Msa0180480-mRNA-1
chr1_4 three_prime_UTR 68381864 68382336 68381864 ID=Msa0180480-mRNA-1:three_prime_utr;Parent=Msa0180480-mRNA-1
Gene Sequence

>Msa0180480

ATGGATAAAGCTCAAACCCATTTCTGGAGACCCGACCCACTTCACTCTTCCATGTTCCGTCCACCAGAAACACCACAAGCACCAATGGAGTTTCTCTCACGTTCATGGAGTGTATCAGCTCTTGAAATCTCCAAAACTCTCTCCTCTTCTTCTTCTTCCAAACCTCCTATAAACACCACCATAGAAGAAAACATCACCGGAGAAACCGAAGAAGAAACCTCCTCATCTGTTTCCTTAAACCCATTTTCCTTTGCTTCCTCTGAAACCACTCAAATGATAATGGAACGCATCATGTCACAAACCGAGGATATTTCTGTGTCTCCAAGAACTTCAGGGAGACTCTCACACAGTAGTGGTCCTTTAACAGATAGTTGTCCTGTTTCACCATCTGAAATCGACGATATCAAGTACGGCCGTGGAAACAACGGCGGTGTAAGCTTAAATAGTTATCTGGGTGGCAGACCACCTGGTGGTGGTGGTGGTAAGACGGTTGGAAGATGGCTTAAGGATAGAAAGGAGAAGAAAAAGGAAGAAGCAAGGGCCCACAATGCCCAGGTTCATGCTGCGGTATCTGTGGCTGCTGTTGCCGCCGCAGTAGCTGCAATTGCTGCAGCCACCGCCGCTTCGTCTGGGTCTGGAAAAGACGAGGAGAAAGCGAATAGTGACTCGGCTTTGGCTTCTGCAGCAACGTTGGTGGCGGCTCAGTGTGTTGAGACTGCAGAGGCGTTGGGGGCGGAACGGGAACACCTTGCTGCGGTGGTTAACTCCGCCGTGAATGTTAGATCTGCTGGTGATATTATGACTTTAACTGCTGCTGCTGCAACAGCTTTGCGTGGGGCTGCAACATTGAAAGCGAGGGCATTGAAGGAAGTTTGGAATATTGCAGCAGTGATTCCTGTGGAGAGAAGTTTGGGGGCTTCTGGTGGTAATGGTAATGGAAGTTCCCATAGTAGCTTCAGCGGTGAGCTTGTACCTGAAGATAATTTCTCGGGTGATCTTCACTGGAAAGTTGTATCTGTATATATAAACAAAATGAATCAGGTTACTCTAAAAATGAAGAGTAGGCACGTTGCTGGGACCATTAAGAAAAAGAAAAAGAATGTGGTGATTGAATTGATCAAAGATATGCCCGCTTGGACGGGACGCCATTTGCTGGAAGGCGGTGAGAATCGTCGCTACTTTGGATTGAAAACATTATTGCGTGGTGTCGTTGAATTTGAGTGCATGAATCAAAGAGAGTATGATGTGTGGACTCAGGGTGTCTCTAGCCTGCTTTCCATTGCAGCCGAGAAGAACAACAGAAATAGATTTTGA
Protein sequence

>Msa0180480

MDKAQTHFWRPDPLHSSMFRPPETPQAPMEFLSRSWSVSALEISKTLSSSSSSKPPINTTIEENITGETEEETSSSVSLNPFSFASSETTQMIMERIMSQTEDISVSPRTSGRLSHSSGPLTDSCPVSPSEIDDIKYGRGNNGGVSLNSYLGGRPPGGGGGKTVGRWLKDRKEKKKEEARAHNAQVHAAVSVAAVAAAVAAIAAATAASSGSGKDEEKANSDSALASAATLVAAQCVETAEALGAEREHLAAVVNSAVNVRSAGDIMTLTAAAATALRGAATLKARALKEVWNIAAVIPVERSLGASGGNGNGSSHSSFSGELVPEDNFSGDLHWKVVSVYINKMNQVTLKMKSRHVAGTIKKKKKNVVIELIKDMPAWTGRHLLEGGENRRYFGLKTLLRGVVEFECMNQREYDVWTQGVSSLLSIAAEKNNRNRF*