Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258960 | XP_003596831.1 | 94.956 | 456 | 18 | 1 | 1 | 456 | 1 | 451 | 0.0 | 893 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258960 | sp|Q9FMR1|RGAP1_ARATH | 59.506 | 405 | 136 | 6 | 52 | 456 | 90 | 466 | 7.45e-151 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258960 | G7ITU3 | 94.956 | 456 | 18 | 1 | 1 | 456 | 1 | 451 | 0.0 | 893 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa0258960 | 0.837299 | 5.640863e-57 | -8.615850e-47 |
| Msa0025090 | Msa0258960 | 0.819707 | 1.008412e-52 | -8.615850e-47 |
| Msa0028450 | Msa0258960 | 0.827864 | 1.235787e-54 | -8.615850e-47 |
| Msa0030710 | Msa0258960 | 0.811194 | 7.907132e-51 | -8.615850e-47 |
| Msa0032040 | Msa0258960 | 0.810435 | 1.154640e-50 | -8.615850e-47 |
| Msa0032210 | Msa0258960 | 0.832498 | 9.132416e-56 | -8.615850e-47 |
| Msa0034800 | Msa0258960 | 0.818756 | 1.660149e-52 | -8.615850e-47 |
| Msa0040170 | Msa0258960 | 0.801681 | 8.027535e-49 | -8.615850e-47 |
| Msa0047990 | Msa0258960 | -0.810491 | 1.122557e-50 | -8.615850e-47 |
| Msa0072590 | Msa0258960 | 0.816475 | 5.426523e-52 | -8.615850e-47 |
| Msa0072710 | Msa0258960 | 0.809319 | 2.006847e-50 | -8.615850e-47 |
| Msa0077920 | Msa0258960 | 0.800221 | 1.595217e-48 | -8.615850e-47 |
| Msa0087880 | Msa0258960 | 0.807443 | 5.043284e-50 | -8.615850e-47 |
| Msa0089410 | Msa0258960 | 0.846816 | 1.712418e-59 | -8.615850e-47 |
| Msa0092750 | Msa0258960 | 0.832934 | 7.120337e-56 | -8.615850e-47 |
| Msa0093830 | Msa0258960 | 0.801628 | 8.230872e-49 | -8.615850e-47 |
| Msa0095550 | Msa0258960 | 0.803404 | 3.542341e-49 | -8.615850e-47 |
| Msa0114960 | Msa0258960 | 0.817537 | 3.131931e-52 | -8.615850e-47 |
| Msa0124070 | Msa0258960 | 0.804074 | 2.571844e-49 | -8.615850e-47 |
| Msa0136520 | Msa0258960 | 0.851341 | 9.451402e-61 | -8.615850e-47 |
| Msa0143360 | Msa0258960 | 0.826932 | 2.067309e-54 | -8.615850e-47 |
| Msa0172530 | Msa0258960 | 0.836724 | 7.914818e-57 | -8.615850e-47 |
| Msa0172580 | Msa0258960 | 0.818528 | 1.870514e-52 | -8.615850e-47 |
| Msa0174800 | Msa0258960 | 0.815583 | 8.581204e-52 | -8.615850e-47 |
| Msa0180480 | Msa0258960 | 0.825971 | 3.502805e-54 | -8.615850e-47 |
| Msa0189050 | Msa0258960 | 0.811005 | 8.692423e-51 | -8.615850e-47 |
| Msa0206600 | Msa0258960 | 0.816277 | 6.007332e-52 | -8.615850e-47 |
| Msa0219140 | Msa0258960 | 0.971964 | 5.331019e-134 | -8.615850e-47 |
| Msa0225050 | Msa0258960 | 0.813757 | 2.177690e-51 | -8.615850e-47 |
| Msa0231310 | Msa0258960 | 0.805009 | 1.641852e-49 | -8.615850e-47 |
| Msa0249670 | Msa0258960 | 0.818706 | 1.704527e-52 | -8.615850e-47 |
| Msa0255700 | Msa0258960 | 0.800582 | 1.347273e-48 | -8.615850e-47 |
| Msa0258960 | Msa0261390 | 0.819462 | 1.146994e-52 | -8.615850e-47 |
| Msa0258960 | Msa0266120 | 0.817652 | 2.950642e-52 | -8.615850e-47 |
| Msa0258960 | Msa0298180 | 0.929123 | 1.090949e-92 | -8.615850e-47 |
| Msa0258960 | Msa0304040 | 0.812875 | 3.402089e-51 | -8.615850e-47 |
| Msa0258960 | Msa0305810 | 0.815610 | 8.464281e-52 | -8.615850e-47 |
| Msa0258960 | Msa0307490 | 0.810753 | 9.853417e-51 | -8.615850e-47 |
| Msa0258960 | Msa0307750 | 0.802010 | 6.871909e-49 | -8.615850e-47 |
| Msa0258960 | Msa0309160 | 0.802025 | 6.824144e-49 | -8.615850e-47 |
| Msa0258960 | Msa0331830 | 0.814319 | 1.636941e-51 | -8.615850e-47 |
| Msa0258960 | Msa0335990 | 0.856859 | 2.419623e-62 | -8.615850e-47 |
| Msa0258960 | Msa0341710 | 0.816841 | 4.490832e-52 | -8.615850e-47 |
| Msa0258960 | Msa0342680 | 0.828107 | 1.080083e-54 | -8.615850e-47 |
| Msa0258960 | Msa0369660 | -0.812603 | 3.900938e-51 | -8.615850e-47 |
| Msa0258960 | Msa0378570 | 0.804889 | 1.739243e-49 | -8.615850e-47 |
| Msa0258960 | Msa0384130 | 0.857732 | 1.335925e-62 | -8.615850e-47 |
| Msa0258960 | Msa0387120 | 0.802394 | 5.729398e-49 | -8.615850e-47 |
| Msa0258960 | Msa0413040 | 0.807354 | 5.266466e-50 | -8.615850e-47 |
| Msa0258960 | Msa0434840 | 0.833633 | 4.767954e-56 | -8.615850e-47 |
| Msa0258960 | Msa0463890 | -0.825242 | 5.215105e-54 | -8.615850e-47 |
| Msa0258960 | Msa0468050 | -0.807156 | 5.800030e-50 | -8.615850e-47 |
| Msa0258960 | Msa0478750 | 0.865347 | 6.309873e-65 | -8.615850e-47 |
| Msa0258960 | Msa0499950 | 0.823729 | 1.184356e-53 | -8.615850e-47 |
| Msa0258960 | Msa0513500 | 0.812706 | 3.704818e-51 | -8.615850e-47 |
| Msa0258960 | Msa0522510 | 0.802485 | 5.487137e-49 | -8.615850e-47 |
| Msa0258960 | Msa0522830 | 0.877201 | 7.599185e-69 | -8.615850e-47 |
| Msa0258960 | Msa0532910 | 0.818591 | 1.809746e-52 | -8.615850e-47 |
| Msa0258960 | Msa0545910 | 0.817123 | 3.881339e-52 | -8.615850e-47 |
| Msa0258960 | Msa0553940 | 0.825992 | 3.464090e-54 | -8.615850e-47 |
| Msa0258960 | Msa0564000 | 0.811549 | 6.621768e-51 | -8.615850e-47 |
| Msa0258960 | Msa0568810 | 0.806050 | 9.928112e-50 | -8.615850e-47 |
| Msa0258960 | Msa0570310 | 0.819879 | 9.208883e-53 | -8.615850e-47 |
| Msa0258960 | Msa0577140 | 0.816125 | 6.497574e-52 | -8.615850e-47 |
| Msa0258960 | Msa0583810 | 0.812367 | 4.394591e-51 | -8.615850e-47 |
| Msa0258960 | Msa0587060 | 0.849792 | 2.575685e-60 | -8.615850e-47 |
| Msa0258960 | Msa0589440 | -0.808535 | 2.952556e-50 | -8.615850e-47 |
| Msa0258960 | Msa0608030 | 0.804816 | 1.801376e-49 | -8.615850e-47 |
| Msa0258960 | Msa0619460 | 0.819170 | 1.336511e-52 | -8.615850e-47 |
| Msa0258960 | Msa0619520 | 0.815547 | 8.743406e-52 | -8.615850e-47 |
| Msa0258960 | Msa0624890 | 0.838822 | 2.289124e-57 | -8.615850e-47 |
| Msa0258960 | Msa0626890 | 0.818051 | 2.398656e-52 | -8.615850e-47 |
| Msa0258960 | Msa0641970 | 0.812703 | 3.710234e-51 | -8.615850e-47 |
| Msa0258960 | Msa0648410 | 0.823750 | 1.170476e-53 | -8.615850e-47 |
| Msa0258960 | Msa0659590 | 0.815616 | 8.438311e-52 | -8.615850e-47 |
| Msa0258960 | Msa0665010 | 0.846238 | 2.462836e-59 | -8.615850e-47 |
| Msa0258960 | Msa0667710 | 0.820930 | 5.287651e-53 | -8.615850e-47 |
| Msa0258960 | Msa0681040 | 0.821384 | 4.154122e-53 | -8.615850e-47 |
| Msa0258960 | Msa0690920 | 0.831028 | 2.105187e-55 | -8.615850e-47 |
| Msa0258960 | Msa0704750 | 0.817787 | 2.750599e-52 | -8.615850e-47 |
| Msa0258960 | Msa0715050 | 0.802991 | 4.314111e-49 | -8.615850e-47 |
| Msa0258960 | Msa0743630 | 0.826908 | 2.094941e-54 | -8.615850e-47 |
| Msa0258960 | Msa0744070 | 0.841172 | 5.582182e-58 | -8.615850e-47 |
| Msa0258960 | Msa0753410 | -0.819470 | 1.142024e-52 | -8.615850e-47 |
| Msa0258960 | Msa0761930 | 0.801240 | 9.883415e-49 | -8.615850e-47 |
| Msa0258960 | Msa0762390 | 0.818674 | 1.733047e-52 | -8.615850e-47 |
| Msa0258960 | Msa0762470 | 0.809471 | 1.861871e-50 | -8.615850e-47 |
| Msa0258960 | Msa0779830 | 0.801472 | 8.860339e-49 | -8.615850e-47 |
| Msa0258960 | Msa0795330 | -0.822334 | 2.504149e-53 | -8.615850e-47 |
| Msa0258960 | Msa0825300 | 0.837882 | 3.997632e-57 | -8.615850e-47 |
| Msa0258960 | Msa0854520 | 0.823067 | 1.690780e-53 | -8.615850e-47 |
| Msa0258960 | Msa0854560 | 0.839901 | 1.200540e-57 | -8.615850e-47 |
| Msa0258960 | Msa0863780 | 0.817546 | 3.117695e-52 | -8.615850e-47 |
| Msa0258960 | Msa0875130 | 0.827260 | 1.725851e-54 | -8.615850e-47 |
| Msa0258960 | Msa0882340 | 0.832671 | 8.276726e-56 | -8.615850e-47 |
| Msa0258960 | Msa0933050 | 0.808658 | 2.778965e-50 | -8.615850e-47 |
| Msa0258960 | Msa0967920 | 0.806046 | 9.949460e-50 | -8.615850e-47 |
| Msa0258960 | Msa0970940 | 0.805156 | 1.529556e-49 | -8.615850e-47 |
| Msa0258960 | Msa0974570 | 0.807545 | 4.796885e-50 | -8.615850e-47 |
| Msa0258960 | Msa0976950 | 0.831612 | 1.512684e-55 | -8.615850e-47 |
| Msa0258960 | Msa0983030 | 0.801900 | 7.239972e-49 | -8.615850e-47 |
| Msa0258960 | Msa1015020 | 0.803275 | 3.767083e-49 | -8.615850e-47 |
| Msa0258960 | Msa1025650 | 0.800546 | 1.370111e-48 | -8.615850e-47 |
| Msa0258960 | Msa1030380 | -0.810337 | 1.211878e-50 | -8.615850e-47 |
| Msa0258960 | Msa1041620 | 0.841912 | 3.563736e-58 | -8.615850e-47 |
| Msa0258960 | Msa1042380 | 0.824936 | 6.159793e-54 | -8.615850e-47 |
| Msa0258960 | Msa1069390 | -0.811008 | 8.679887e-51 | -8.615850e-47 |
| Msa0258960 | Msa1081650 | 0.858921 | 5.911013e-63 | -8.615850e-47 |
| Msa0258960 | Msa1125100 | 0.823000 | 1.752480e-53 | -8.615850e-47 |
| Msa0258960 | Msa1125150 | 0.821827 | 3.281759e-53 | -8.615850e-47 |
| Msa0258960 | Msa1160470 | 0.807116 | 5.915125e-50 | -8.615850e-47 |
| Msa0258960 | Msa1166520 | 0.834226 | 3.387147e-56 | -8.615850e-47 |
| Msa0258960 | Msa1175820 | 0.802369 | 5.795539e-49 | -8.615850e-47 |
| Msa0258960 | Msa1185040 | 0.809820 | 1.566617e-50 | -8.615850e-47 |
| Msa0258960 | Msa1199690 | 0.820486 | 6.688982e-53 | -8.615850e-47 |
| Msa0258960 | Msa1203090 | 0.803825 | 2.897864e-49 | -8.615850e-47 |
| Msa0258960 | Msa1223600 | 0.805950 | 1.042285e-49 | -8.615850e-47 |
| Msa0258960 | Msa1229880 | 0.801464 | 8.893497e-49 | -8.615850e-47 |
| Msa0258960 | Msa1235960 | 0.839480 | 1.545101e-57 | -8.615850e-47 |
| Msa0258960 | Msa1235990 | 0.836006 | 1.204535e-56 | -8.615850e-47 |
| Msa0258960 | Msa1251890 | 0.814777 | 1.296149e-51 | -8.615850e-47 |
| Msa0258960 | Msa1251960 | 0.804014 | 2.647385e-49 | -8.615850e-47 |
| Msa0258960 | Msa1252220 | 0.849747 | 2.651704e-60 | -8.615850e-47 |
| Msa0258960 | Msa1257170 | -0.804284 | 2.325243e-49 | -8.615850e-47 |
| Msa0258960 | Msa1258600 | -0.843180 | 1.642107e-58 | -8.615850e-47 |
| Msa0258960 | Msa1267800 | 0.806848 | 6.740049e-50 | -8.615850e-47 |
| Msa0258960 | Msa1279240 | 0.822964 | 1.786964e-53 | -8.615850e-47 |
| Msa0258960 | Msa1293030 | 0.817668 | 2.926076e-52 | -8.615850e-47 |
| Msa0258960 | Msa1295840 | 0.805462 | 1.319432e-49 | -8.615850e-47 |
| Msa0258960 | Msa1298440 | -0.825523 | 4.474935e-54 | -8.615850e-47 |
| Msa0258960 | Msa1304980 | -0.822078 | 2.870589e-53 | -8.615850e-47 |
| Msa0258960 | Msa1316090 | 0.835242 | 1.880348e-56 | -8.615850e-47 |
| Msa0258960 | Msa1319710 | 0.817519 | 3.162634e-52 | -8.615850e-47 |
| Msa0258960 | Msa1357760 | 0.841744 | 3.945818e-58 | -8.615850e-47 |
| Msa0258960 | Msa1370830 | 0.817365 | 3.423991e-52 | -8.615850e-47 |
| Msa0258960 | Msa1390410 | 0.805955 | 1.039429e-49 | -8.615850e-47 |
| Msa0258960 | Msa1395700 | 0.801880 | 7.306887e-49 | -8.615850e-47 |
| Msa0258960 | Msa1397550 | 0.851834 | 6.855905e-61 | -8.615850e-47 |
| Msa0258960 | Msa1400940 | -0.846714 | 1.826173e-59 | -8.615850e-47 |
| Msa0258960 | Msa1420630 | 0.818592 | 1.808556e-52 | -8.615850e-47 |
| Msa0258960 | Msa1425570 | 0.818101 | 2.336562e-52 | -8.615850e-47 |
| Msa0258960 | Msa1443430 | 0.867353 | 1.457196e-65 | -8.615850e-47 |
| Msa0258960 | Msa1449510 | 0.807393 | 5.166543e-50 | -8.615850e-47 |
| Msa0258960 | Msa1452080 | 0.800269 | 1.559842e-48 | -8.615850e-47 |
| Msa0258960 | Msa1458250 | 0.823641 | 1.241821e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258960 | MtrunA17_Chr2g0321541 | 94.956 | 456 | 18 | 1 | 1 | 456 | 1 | 451 | 0.0 | 893 |
| Msa0258960 | MtrunA17_Chr7g0266501 | 55.263 | 418 | 163 | 6 | 52 | 456 | 71 | 477 | 9.41e-150 | 434 |
| Msa0258960 | MtrunA17_Chr4g0026251 | 72.069 | 290 | 75 | 2 | 55 | 344 | 73 | 356 | 2.38e-146 | 422 |
| Msa0258960 | MtrunA17_Chr8g0346171 | 59.880 | 334 | 116 | 4 | 47 | 380 | 79 | 394 | 7.28e-131 | 387 |
| Msa0258960 | MtrunA17_Chr1g0196181 | 74.026 | 231 | 60 | 0 | 78 | 308 | 67 | 297 | 4.96e-123 | 367 |
| Msa0258960 | MtrunA17_Chr7g0268531 | 65.251 | 259 | 85 | 1 | 55 | 308 | 32 | 290 | 3.52e-111 | 335 |
| Msa0258960 | MtrunA17_Chr5g0426461 | 75.974 | 154 | 33 | 1 | 117 | 270 | 16 | 165 | 3.57e-77 | 238 |
| Msa0258960 | MtrunA17_Chr7g0250591 | 55.251 | 219 | 91 | 3 | 117 | 335 | 14 | 225 | 9.29e-72 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258960 | AT5G22400.1 | 59.506 | 405 | 136 | 6 | 52 | 456 | 90 | 466 | 7.57e-152 | 440 |
| Msa0258960 | AT3G11490.1 | 58.192 | 354 | 109 | 4 | 25 | 347 | 19 | 364 | 1.59e-132 | 389 |
| Msa0258960 | AT2G46710.1 | 63.574 | 291 | 102 | 2 | 21 | 308 | 44 | 333 | 2.61e-125 | 372 |
| Msa0258960 | AT1G08340.1 | 69.796 | 245 | 74 | 0 | 78 | 322 | 1 | 245 | 3.53e-125 | 367 |
| Msa0258960 | AT4G03100.1 | 63.504 | 274 | 89 | 1 | 50 | 312 | 39 | 312 | 5.52e-122 | 362 |
Find 94 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAGGTTGCAAATTTCTA+AGG | 0.198022 | 2_2:-55646426 | Msa0258960:three_prime_UTR |
| TCTTGAAAATGCTTATATTA+AGG | 0.202458 | 2_2:-55646980 | Msa0258960:CDS |
| GTAAGTTTGTTTAAAGTATA+AGG | 0.221431 | 2_2:-55646442 | Msa0258960:three_prime_UTR |
| TGATAGGTTCAATGGTTTCT+TGG | 0.248536 | 2_2:-55649055 | Msa0258960:CDS |
| CCTAGCACTAGGAGGCCTTC+TGG | 0.256375 | 2_2:+55649002 | None:intergenic |
| AAAAGTGTCGGTCGAGAAAA+AGG | 0.290122 | 2_2:-55646568 | Msa0258960:CDS |
| TGTCATGGTGGCAATGAAAA+AGG | 0.303033 | 2_2:+55649353 | None:intergenic |
| GGAACTTCCTAGCGGCGTTC+TGG | 0.311234 | 2_2:-55647382 | Msa0258960:CDS |
| GATAGGTTCAATGGTTTCTT+GGG | 0.329734 | 2_2:-55649054 | Msa0258960:CDS |
| TTGTCTGGCAGGACTAATTA+AGG | 0.347959 | 2_2:-55648180 | Msa0258960:intron |
| GAAGGTTCTAAATTCAATCT+TGG | 0.352625 | 2_2:+55646918 | None:intergenic |
| CAATACAGTCTTCCTCAGTT+TGG | 0.364130 | 2_2:+55647328 | None:intergenic |
| GTATGTTCAAGAAGGGTTGC+AGG | 0.366227 | 2_2:-55648408 | Msa0258960:intron |
| CTGAAGCTGCACTCTTGGAT+TGG | 0.367227 | 2_2:-55647281 | Msa0258960:CDS |
| TGCATTAACAGAAGAATTGT+TGG | 0.374854 | 2_2:+55648440 | None:intergenic |
| TCCTCAACTGAAAGAAAATC+TGG | 0.379666 | 2_2:-55646756 | Msa0258960:CDS |
| ACATTGAAAGGGAAACAAAA+AGG | 0.385285 | 2_2:+55649710 | None:intergenic |
| GTTGTGTAACATGTTGTTGT+TGG | 0.390330 | 2_2:-55649686 | Msa0258960:five_prime_UTR |
| GAAGTTGAAGTTGAAGTTGA+AGG | 0.390622 | 2_2:+55649273 | None:intergenic |
| AGTAGTTCAAATGCTAGAAA+AGG | 0.402969 | 2_2:-55646630 | Msa0258960:CDS |
| TCATGCTGAAGCTGCACTCT+TGG | 0.410731 | 2_2:-55647286 | Msa0258960:CDS |
| GCGACATGGCGCACGTTTGT+TGG | 0.420819 | 2_2:+55649090 | None:intergenic |
| GAACAGACCTGAGTCATGTT+TGG | 0.422768 | 2_2:+55647177 | None:intergenic |
| CTAGCACTAGGAGGCCTTCT+GGG | 0.423002 | 2_2:+55649003 | None:intergenic |
| CAATGTACATCAATGTCTTC+AGG | 0.428431 | 2_2:+55648200 | None:intergenic |
| TACATCAGCCATTAGATTGA+TGG | 0.431052 | 2_2:+55647257 | None:intergenic |
| GGAGGCCTTCTGGGAAAATC+AGG | 0.439195 | 2_2:+55649012 | None:intergenic |
| GTTAGGAATCAATTGAACTT+AGG | 0.440142 | 2_2:-55648230 | Msa0258960:CDS |
| GGATTGGGCCATCAATCTAA+TGG | 0.467322 | 2_2:-55647265 | Msa0258960:CDS |
| TGAAGCTGCACTCTTGGATT+GGG | 0.473582 | 2_2:-55647280 | Msa0258960:CDS |
| AAATCAGGTTCAAACTCATC+AGG | 0.480208 | 2_2:+55649027 | None:intergenic |
| AAGTAAAATGAGGTGGAGAA+TGG | 0.481632 | 2_2:+55649322 | None:intergenic |
| ATAGTCAAGAGGAACATGTT+AGG | 0.482181 | 2_2:-55648247 | Msa0258960:CDS |
| GCGTACATCAATGCAGTGAA+TGG | 0.486250 | 2_2:+55647020 | None:intergenic |
| GGACAACAACCTGTGATCAA+TGG | 0.493660 | 2_2:-55646591 | Msa0258960:CDS |
| GAATCAATTGAACTTAGGAT+TGG | 0.495739 | 2_2:-55648225 | Msa0258960:CDS |
| GTAGTTCAAATGCTAGAAAA+GGG | 0.502633 | 2_2:-55646629 | Msa0258960:CDS |
| TGTTACACAACAACATTGAA+AGG | 0.509170 | 2_2:+55649698 | None:intergenic |
| AAAAGGAAGAGTAGAGCTAA+AGG | 0.512899 | 2_2:+55649727 | None:intergenic |
| GATCAGACCGAGTCGAAGCT+TGG | 0.514597 | 2_2:-55646515 | Msa0258960:CDS |
| GGCATTTGTATGTTCAAGAA+GGG | 0.517493 | 2_2:-55648415 | Msa0258960:CDS |
| AGACATTGATGTACATTGTC+TGG | 0.518937 | 2_2:-55648195 | Msa0258960:CDS |
| AGGCATTTGTATGTTCAAGA+AGG | 0.519056 | 2_2:-55648416 | Msa0258960:CDS |
| TACTTTAAACAAACTTACAA+AGG | 0.523846 | 2_2:+55646447 | None:intergenic |
| TTCACCGCCAAGCTTCGACT+CGG | 0.526197 | 2_2:+55646508 | None:intergenic |
| GTGGGGAAGAATAACAAGTC+TGG | 0.528840 | 2_2:-55646660 | Msa0258960:CDS |
| CAAAAGTAACGTGTGCGACA+TGG | 0.530420 | 2_2:+55649076 | None:intergenic |
| TTTGTACATGTATAGGTGGA+AGG | 0.531414 | 2_2:-55648293 | Msa0258960:intron |
| AAGGACGCTACGAGAAAGAA+AGG | 0.533822 | 2_2:-55646961 | Msa0258960:CDS |
| GTTACACAACAACATTGAAA+GGG | 0.536375 | 2_2:+55649699 | None:intergenic |
| TTGTTGCCACTACTCTTGAA+AGG | 0.537642 | 2_2:+55649141 | None:intergenic |
| CAATTCTTCTGTTAATGCAA+AGG | 0.543052 | 2_2:-55648436 | Msa0258960:CDS |
| ACATGGCGCACGTTTGTTGG+AGG | 0.545851 | 2_2:+55649093 | None:intergenic |
| TTATTTCCTTTCAAGAGTAG+TGG | 0.553770 | 2_2:-55649147 | Msa0258960:CDS |
| ATAAGGTTGCAAATTTCTAA+GGG | 0.554414 | 2_2:-55646425 | Msa0258960:three_prime_UTR |
| ATTGATGTACATTGTCTGGC+AGG | 0.558765 | 2_2:-55648191 | Msa0258960:CDS |
| TTGTACATGTATAGGTGGAA+GGG | 0.562108 | 2_2:-55648292 | Msa0258960:intron |
| AAATGAGAAATAGTAAGACT+TGG | 0.562992 | 2_2:+55649485 | None:intergenic |
| CCAGAAGGCCTCCTAGTGCT+AGG | 0.566429 | 2_2:-55649002 | Msa0258960:intron |
| GAAATGACTCGAAAAGTCTA+CGG | 0.568493 | 2_2:+55646880 | None:intergenic |
| CGGTGTACATTCTCATCAGA+AGG | 0.569866 | 2_2:+55646900 | None:intergenic |
| CAACAAAGACCTTTGCAACA+TGG | 0.570037 | 2_2:-55649124 | Msa0258960:CDS |
| GGAATCAGATTTCATTACAA+TGG | 0.570601 | 2_2:+55646267 | None:intergenic |
| GACTTATGTCCATGTTGCAA+AGG | 0.574114 | 2_2:+55649115 | None:intergenic |
| TGTGTGTTAGATAGAGTGAG+TGG | 0.574728 | 2_2:+55649650 | None:intergenic |
| GAAGTTGAAGTTGAAGGTGT+TGG | 0.580577 | 2_2:+55649279 | None:intergenic |
| AATGAGTCCAGAACGCCGCT+AGG | 0.582282 | 2_2:+55647375 | None:intergenic |
| GGAAAATGTGGTTGTGAAGG+AGG | 0.586388 | 2_2:+55649207 | None:intergenic |
| TGAGAATCTAATTTGCAATG+AGG | 0.590817 | 2_2:-55646715 | Msa0258960:CDS |
| AAGAGTGCAGCTTCAGCATG+AGG | 0.593298 | 2_2:+55647288 | None:intergenic |
| CAGTTATCTTATGATTCAAG+AGG | 0.593577 | 2_2:-55648473 | Msa0258960:CDS |
| TAATGCAGACAATAGTCAAG+AGG | 0.607790 | 2_2:-55648258 | Msa0258960:CDS |
| AGTGGAAAATGTGGTTGTGA+AGG | 0.613159 | 2_2:+55649204 | None:intergenic |
| GAACGCGCGCAACATTGCCA+TGG | 0.618131 | 2_2:-55647208 | Msa0258960:CDS |
| TGCAGCAGCAGACAATGAAG+AGG | 0.625545 | 2_2:-55646844 | Msa0258960:CDS |
| AGTTAGAATGAAGAAAAGTG+TGG | 0.627548 | 2_2:+55649531 | None:intergenic |
| TATATAAGTTAAACAAACAC+AGG | 0.627876 | 2_2:+55646361 | None:intergenic |
| GTTAGAATGAAGAAAAGTGT+GGG | 0.630052 | 2_2:+55649532 | None:intergenic |
| TGGCAAGAGAATGAAGAGAG+AGG | 0.631862 | 2_2:+55649243 | None:intergenic |
| TGTGATCAATGGAAAAGTGT+CGG | 0.637614 | 2_2:-55646580 | Msa0258960:CDS |
| TGTTGCATATACCTAGCACT+AGG | 0.641672 | 2_2:+55648991 | None:intergenic |
| AGTTATCTTATGATTCAAGA+GGG | 0.643572 | 2_2:-55648472 | Msa0258960:CDS |
| TTTCCTCCGAAAAGAAACGT+GGG | 0.647448 | 2_2:-55646678 | Msa0258960:CDS |
| TGCATATACCTAGCACTAGG+AGG | 0.648465 | 2_2:+55648994 | None:intergenic |
| AAGACTGTATTGAACTAGTG+AGG | 0.648835 | 2_2:-55647317 | Msa0258960:CDS |
| GATGATGAAGTAAAATGAGG+TGG | 0.654198 | 2_2:+55649315 | None:intergenic |
| GTTGATGATGAAGTAAAATG+AGG | 0.658128 | 2_2:+55649312 | None:intergenic |
| CAGACCGAGTCGAAGCTTGG+CGG | 0.664957 | 2_2:-55646512 | Msa0258960:CDS |
| GTTTCCTCCGAAAAGAAACG+TGG | 0.672738 | 2_2:-55646679 | Msa0258960:CDS |
| AGAATGGAGAACTTCTGTCA+TGG | 0.691349 | 2_2:+55649338 | None:intergenic |
| TTCCTCCGAAAAGAAACGTG+GGG | 0.693572 | 2_2:-55646677 | Msa0258960:CDS |
| ATGGAGAACTTCTGTCATGG+TGG | 0.693833 | 2_2:+55649341 | None:intergenic |
| AGTAATGCAATGCCAAACTG+AGG | 0.695720 | 2_2:-55647340 | Msa0258960:CDS |
| TGGTTTCGGGAACTTCCTAG+CGG | 0.730728 | 2_2:-55647390 | Msa0258960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAATATAAAAAGAA+AGG | + | chr2_2:55646608-55646627 | None:intergenic | 10.0% |
| !!! | TTTTTTTTACGTTTTTAAAA+AGG | - | chr2_2:55648007-55648026 | Msa0258960:intron | 10.0% |
| !! | TTATTAACAAAAATCAGATA+TGG | + | chr2_2:55647107-55647126 | None:intergenic | 15.0% |
| !! | ATCATAAAACTTTACATATA+GGG | + | chr2_2:55648405-55648424 | None:intergenic | 15.0% |
| !!! | TATAAAAGCATTAATGAAAA+AGG | + | chr2_2:55648539-55648558 | None:intergenic | 15.0% |
| !!! | TATTTTCTGAATTAAGAAAG+TGG | + | chr2_2:55646573-55646592 | None:intergenic | 20.0% |
| !! | GATATGGAAAAAAATAAAAC+TGG | + | chr2_2:55647091-55647110 | None:intergenic | 20.0% |
| !! | ACCATTTATATGTCATAATT+TGG | - | chr2_2:55647215-55647234 | Msa0258960:CDS | 20.0% |
| !! | TCCAAATTATGACATATAAA+TGG | + | chr2_2:55647219-55647238 | None:intergenic | 20.0% |
| !! | TCATAATTTGGATTGAATAA+GGG | - | chr2_2:55647227-55647246 | Msa0258960:CDS | 20.0% |
| !! | AAAATCAAACAAAAAAAGAG+AGG | + | chr2_2:55647462-55647481 | None:intergenic | 20.0% |
| !!! | AATATTTAGGATGGTAAATT+GGG | - | chr2_2:55648241-55648260 | Msa0258960:CDS | 20.0% |
| !! | GATCATAAAACTTTACATAT+AGG | + | chr2_2:55648406-55648425 | None:intergenic | 20.0% |
| !! | TCTTGAAAATGCTTATATTA+AGG | - | chr2_2:55649018-55649037 | Msa0258960:CDS | 20.0% |
| !! | TACTTTAAACAAACTTACAA+AGG | + | chr2_2:55649554-55649573 | None:intergenic | 20.0% |
| !!! | GTAAGTTTGTTTAAAGTATA+AGG | - | chr2_2:55649556-55649575 | Msa0258960:five_prime_UTR | 20.0% |
| !! | TATATAAGTTAAACAAACAC+AGG | + | chr2_2:55649640-55649659 | None:intergenic | 20.0% |
| !!! | TATTATTTTGTTGCGTGTTT+TGG | + | chr2_2:55646408-55646427 | None:intergenic | 25.0% |
| !! | ATCATGAAGTGAGTATTTTA+AGG | + | chr2_2:55646438-55646457 | None:intergenic | 25.0% |
| ! | AAATGAGAAATAGTAAGACT+TGG | + | chr2_2:55646516-55646535 | None:intergenic | 25.0% |
| ! | AGTAGTGTGTATATAATTCA+TGG | - | chr2_2:55647140-55647159 | Msa0258960:intron | 25.0% |
| ! | GTCATAATTTGGATTGAATA+AGG | - | chr2_2:55647226-55647245 | Msa0258960:CDS | 25.0% |
| !!! | TCAAAAGCTATCTAAGATTT+TGG | - | chr2_2:55647317-55647336 | Msa0258960:CDS | 25.0% |
| ! | GAGGAAAAAGTAAAACAAAA+AGG | + | chr2_2:55647443-55647462 | None:intergenic | 25.0% |
| ! | AGTTATCTTATGATTCAAGA+GGG | - | chr2_2:55647526-55647545 | Msa0258960:intron | 25.0% |
| ! | ACTAGTTCAATTATATTGCT+TGG | - | chr2_2:55647669-55647688 | Msa0258960:intron | 25.0% |
| ! | AGTTGAATTTGTACATGTAT+AGG | - | chr2_2:55647698-55647717 | Msa0258960:intron | 25.0% |
| !!! | ATGTTGAATAGTTTTGCTAT+AGG | - | chr2_2:55647963-55647982 | Msa0258960:intron | 25.0% |
| ! | TTTGTCTCATTTATTAGACT+TGG | + | chr2_2:55648157-55648176 | None:intergenic | 25.0% |
| !! | CAATATTTAGGATGGTAAAT+TGG | - | chr2_2:55648240-55648259 | Msa0258960:CDS | 25.0% |
| ! | ATATATCCTGTAGTTATGAA+TGG | - | chr2_2:55648270-55648289 | Msa0258960:CDS | 25.0% |
| ! | AAACTTTACATATAGGGTAA+AGG | + | chr2_2:55648399-55648418 | None:intergenic | 25.0% |
| !! | TTTTCAAAGATGAAAATGCA+TGG | + | chr2_2:55648492-55648511 | None:intergenic | 25.0% |
| !! | TGATATTCTTGTACTTTTCA+AGG | - | chr2_2:55648583-55648602 | Msa0258960:intron | 25.0% |
| ! | GCTAAACTATTATTAGTTCA+TGG | - | chr2_2:55648881-55648900 | Msa0258960:intron | 25.0% |
| !! | TTCAAGTTAATCACAGTATT+TGG | - | chr2_2:55648931-55648950 | Msa0258960:intron | 25.0% |
| ! | TATAAGGTTGCAAATTTCTA+AGG | - | chr2_2:55649572-55649591 | Msa0258960:five_prime_UTR | 25.0% |
| ! | ATAAGGTTGCAAATTTCTAA+GGG | - | chr2_2:55649573-55649592 | Msa0258960:five_prime_UTR | 25.0% |
| ACATTGAAAGGGAAACAAAA+AGG | + | chr2_2:55646291-55646310 | None:intergenic | 30.0% | |
| GTTACACAACAACATTGAAA+GGG | + | chr2_2:55646302-55646321 | None:intergenic | 30.0% | |
| TGTTACACAACAACATTGAA+AGG | + | chr2_2:55646303-55646322 | None:intergenic | 30.0% | |
| ! | GTTAGAATGAAGAAAAGTGT+GGG | + | chr2_2:55646469-55646488 | None:intergenic | 30.0% |
| AGTTAGAATGAAGAAAAGTG+TGG | + | chr2_2:55646470-55646489 | None:intergenic | 30.0% | |
| !! | GTTGATGATGAAGTAAAATG+AGG | + | chr2_2:55646689-55646708 | None:intergenic | 30.0% |
| TTATTTCCTTTCAAGAGTAG+TGG | - | chr2_2:55646851-55646870 | Msa0258960:CDS | 30.0% | |
| !!! | GTTACTTTTGATAGGTTCAA+TGG | - | chr2_2:55646935-55646954 | Msa0258960:CDS | 30.0% |
| GTGACAATGCATTACTAAAT+TGG | - | chr2_2:55647249-55647268 | Msa0258960:CDS | 30.0% | |
| ! | AACTATGCTAAGAAAAGCAT+AGG | - | chr2_2:55647355-55647374 | Msa0258960:CDS | 30.0% |
| ATGATTCGTTCGCTAATTAA+AGG | + | chr2_2:55647400-55647419 | None:intergenic | 30.0% | |
| CAGTTATCTTATGATTCAAG+AGG | - | chr2_2:55647525-55647544 | Msa0258960:intron | 30.0% | |
| TGCATTAACAGAAGAATTGT+TGG | + | chr2_2:55647561-55647580 | None:intergenic | 30.0% | |
| CAATTCTTCTGTTAATGCAA+AGG | - | chr2_2:55647562-55647581 | Msa0258960:intron | 30.0% | |
| TGAATTTGTACATGTATAGG+TGG | - | chr2_2:55647701-55647720 | Msa0258960:intron | 30.0% | |
| GTTAGGAATCAATTGAACTT+AGG | - | chr2_2:55647768-55647787 | Msa0258960:intron | 30.0% | |
| GAATCAATTGAACTTAGGAT+TGG | - | chr2_2:55647773-55647792 | Msa0258960:intron | 30.0% | |
| TGATTCATCATGTAACTGAT+TGG | - | chr2_2:55648097-55648116 | Msa0258960:intron | 30.0% | |
| AACATCATTTCAAGACACAT+TGG | - | chr2_2:55648180-55648199 | Msa0258960:intron | 30.0% | |
| TTACCATCCTAAATATTGCA+TGG | + | chr2_2:55648238-55648257 | None:intergenic | 30.0% | |
| AAATGTCCATTCATAACTAC+AGG | + | chr2_2:55648279-55648298 | None:intergenic | 30.0% | |
| AAAGGAGTTGAAGAAGTTAA+AGG | + | chr2_2:55648381-55648400 | None:intergenic | 30.0% | |
| TCTGATAGTACTTATACCTT+AGG | - | chr2_2:55648908-55648927 | Msa0258960:intron | 30.0% | |
| !! | GAAGGTTCTAAATTCAATCT+TGG | + | chr2_2:55649083-55649102 | None:intergenic | 30.0% |
| ! | TGAGAATCTAATTTGCAATG+AGG | - | chr2_2:55649283-55649302 | Msa0258960:CDS | 30.0% |
| AGTAGTTCAAATGCTAGAAA+AGG | - | chr2_2:55649368-55649387 | Msa0258960:five_prime_UTR | 30.0% | |
| GTAGTTCAAATGCTAGAAAA+GGG | - | chr2_2:55649369-55649388 | Msa0258960:five_prime_UTR | 30.0% | |
| AAAAGGAAGAGTAGAGCTAA+AGG | + | chr2_2:55646274-55646293 | None:intergenic | 35.0% | |
| GTTGTGTAACATGTTGTTGT+TGG | - | chr2_2:55646312-55646331 | Msa0258960:three_prime_UTR | 35.0% | |
| !! | TTTTGAGTATTGTGTTGAGC+TGG | + | chr2_2:55646493-55646512 | None:intergenic | 35.0% |
| AAGTAAAATGAGGTGGAGAA+TGG | + | chr2_2:55646679-55646698 | None:intergenic | 35.0% | |
| GATGATGAAGTAAAATGAGG+TGG | + | chr2_2:55646686-55646705 | None:intergenic | 35.0% | |
| GAAGTTGAAGTTGAAGTTGA+AGG | + | chr2_2:55646728-55646747 | None:intergenic | 35.0% | |
| TTGTGAAGGAGGTTGAAAAA+TGG | + | chr2_2:55646783-55646802 | None:intergenic | 35.0% | |
| AGCTCAAAAAGTGGAAAATG+TGG | + | chr2_2:55646806-55646825 | None:intergenic | 35.0% | |
| GTTACTAGTAGCTCAAAAAG+TGG | + | chr2_2:55646815-55646834 | None:intergenic | 35.0% | |
| TGATAGGTTCAATGGTTTCT+TGG | - | chr2_2:55646943-55646962 | Msa0258960:CDS | 35.0% | |
| GATAGGTTCAATGGTTTCTT+GGG | - | chr2_2:55646944-55646963 | Msa0258960:CDS | 35.0% | |
| AAATCAGGTTCAAACTCATC+AGG | + | chr2_2:55646974-55646993 | None:intergenic | 35.0% | |
| !! | ACTGGTCTCAAATTTTGACA+AGG | + | chr2_2:55647073-55647092 | None:intergenic | 35.0% |
| GCATTACTAAATTGGATGCT+TGG | - | chr2_2:55647257-55647276 | Msa0258960:CDS | 35.0% | |
| ATTCGTTCGCTAATTAAAGG+CGG | + | chr2_2:55647397-55647416 | None:intergenic | 35.0% | |
| ! | ACATGTAGTGCAACTGTTTT+TGG | - | chr2_2:55647483-55647502 | Msa0258960:intron | 35.0% |
| AGGCATTTGTATGTTCAAGA+AGG | - | chr2_2:55647582-55647601 | Msa0258960:intron | 35.0% | |
| GGCATTTGTATGTTCAAGAA+GGG | - | chr2_2:55647583-55647602 | Msa0258960:intron | 35.0% | |
| TTTGTACATGTATAGGTGGA+AGG | - | chr2_2:55647705-55647724 | Msa0258960:intron | 35.0% | |
| TTGTACATGTATAGGTGGAA+GGG | - | chr2_2:55647706-55647725 | Msa0258960:intron | 35.0% | |
| TAATGCAGACAATAGTCAAG+AGG | - | chr2_2:55647740-55647759 | Msa0258960:intron | 35.0% | |
| ATAGTCAAGAGGAACATGTT+AGG | - | chr2_2:55647751-55647770 | Msa0258960:intron | 35.0% | |
| CAATGTACATCAATGTCTTC+AGG | + | chr2_2:55647801-55647820 | None:intergenic | 35.0% | |
| AGACATTGATGTACATTGTC+TGG | - | chr2_2:55647803-55647822 | Msa0258960:intron | 35.0% | |
| GGACTAATTAAGGTATGACA+TGG | - | chr2_2:55647828-55647847 | Msa0258960:intron | 35.0% | |
| GTTTCGTGAATTGATCTGAA+TGG | - | chr2_2:55647904-55647923 | Msa0258960:intron | 35.0% | |
| TCATGTAACTGATTGGAGAA+AGG | - | chr2_2:55648104-55648123 | Msa0258960:intron | 35.0% | |
| AGCTACACCATGCAATATTT+AGG | - | chr2_2:55648228-55648247 | Msa0258960:CDS | 35.0% | |
| ACACCATGCAATATTTAGGA+TGG | - | chr2_2:55648232-55648251 | Msa0258960:CDS | 35.0% | |
| !! | TTCTTGTACTTTTCAAGGCT+TGG | - | chr2_2:55648588-55648607 | Msa0258960:intron | 35.0% |
| !! | TACTTTTCAAGGCTTGGTTT+CGG | - | chr2_2:55648594-55648613 | Msa0258960:intron | 35.0% |
| AAGACTGTATTGAACTAGTG+AGG | - | chr2_2:55648681-55648700 | Msa0258960:intron | 35.0% | |
| TACATCAGCCATTAGATTGA+TGG | + | chr2_2:55648744-55648763 | None:intergenic | 35.0% | |
| ! | CTGTGATTAACTTGAACCTA+AGG | + | chr2_2:55648927-55648946 | None:intergenic | 35.0% |
| GAAATGACTCGAAAAGTCTA+CGG | + | chr2_2:55649121-55649140 | None:intergenic | 35.0% | |
| !!! | GGAGTTTTTTTCGAGTGATT+CGG | + | chr2_2:55649225-55649244 | None:intergenic | 35.0% |
| TCCTCAACTGAAAGAAAATC+TGG | - | chr2_2:55649242-55649261 | Msa0258960:CDS | 35.0% | |
| ! | TTGTTGTCCTCTTGTCTTTT+TGG | + | chr2_2:55649396-55649415 | None:intergenic | 35.0% |
| ! | TGTGATCAATGGAAAAGTGT+CGG | - | chr2_2:55649418-55649437 | Msa0258960:five_prime_UTR | 35.0% |
| TGTGTGTTAGATAGAGTGAG+TGG | + | chr2_2:55646351-55646370 | None:intergenic | 40.0% | |
| TGTCATGGTGGCAATGAAAA+AGG | + | chr2_2:55646648-55646667 | None:intergenic | 40.0% | |
| AGAATGGAGAACTTCTGTCA+TGG | + | chr2_2:55646663-55646682 | None:intergenic | 40.0% | |
| ! | GAAGTTGAAGTTGAAGGTGT+TGG | + | chr2_2:55646722-55646741 | None:intergenic | 40.0% |
| AAGGAGGTTGAAAAATGGCA+TGG | + | chr2_2:55646778-55646797 | None:intergenic | 40.0% | |
| AGTGGAAAATGTGGTTGTGA+AGG | + | chr2_2:55646797-55646816 | None:intergenic | 40.0% | |
| TTGTTGCCACTACTCTTGAA+AGG | + | chr2_2:55646860-55646879 | None:intergenic | 40.0% | |
| CAACAAAGACCTTTGCAACA+TGG | - | chr2_2:55646874-55646893 | Msa0258960:CDS | 40.0% | |
| GACTTATGTCCATGTTGCAA+AGG | + | chr2_2:55646886-55646905 | None:intergenic | 40.0% | |
| !!! | TCGCACACGTTACTTTTGAT+AGG | - | chr2_2:55646927-55646946 | Msa0258960:CDS | 40.0% |
| ! | TTGAACCTGATTTTCCCAGA+AGG | - | chr2_2:55646981-55647000 | Msa0258960:CDS | 40.0% |
| TGTTGCATATACCTAGCACT+AGG | + | chr2_2:55647010-55647029 | None:intergenic | 40.0% | |
| ATTGATGTACATTGTCTGGC+AGG | - | chr2_2:55647807-55647826 | Msa0258960:intron | 40.0% | |
| TTGTCTGGCAGGACTAATTA+AGG | - | chr2_2:55647818-55647837 | Msa0258960:intron | 40.0% | |
| !!! | GTTCGTTTTTTCTCCTTCAC+CGG | - | chr2_2:55648340-55648359 | Msa0258960:intron | 40.0% |
| !! | ACTTTTCAAGGCTTGGTTTC+GGG | - | chr2_2:55648595-55648614 | Msa0258960:intron | 40.0% |
| AGTAATGCAATGCCAAACTG+AGG | - | chr2_2:55648658-55648677 | Msa0258960:intron | 40.0% | |
| CAATACAGTCTTCCTCAGTT+TGG | + | chr2_2:55648673-55648692 | None:intergenic | 40.0% | |
| !! | TTGGCTTTTCTGATTGCAGA+TGG | - | chr2_2:55648950-55648969 | Msa0258960:intron | 40.0% |
| ! | GCCAGATTTTCTTTCAGTTG+AGG | + | chr2_2:55649246-55649265 | None:intergenic | 40.0% |
| TTTCCTCCGAAAAGAAACGT+GGG | - | chr2_2:55649320-55649339 | Msa0258960:CDS | 40.0% | |
| ! | TTCTTCCCCACGTTTCTTTT+CGG | + | chr2_2:55649329-55649348 | None:intergenic | 40.0% |
| AAAGGGTCCAAAAAGACAAG+AGG | - | chr2_2:55649386-55649405 | Msa0258960:five_prime_UTR | 40.0% | |
| ! | GACACTTTTCCATTGATCAC+AGG | + | chr2_2:55649419-55649438 | None:intergenic | 40.0% |
| !! | AAAAGTGTCGGTCGAGAAAA+AGG | - | chr2_2:55649430-55649449 | Msa0258960:five_prime_UTR | 40.0% |
| !! | AAAGTGTCGGTCGAGAAAAA+GGG | - | chr2_2:55649431-55649450 | Msa0258960:five_prime_UTR | 40.0% |
| ATGGAGAACTTCTGTCATGG+TGG | + | chr2_2:55646660-55646679 | None:intergenic | 45.0% | |
| TGGCAAGAGAATGAAGAGAG+AGG | + | chr2_2:55646758-55646777 | None:intergenic | 45.0% | |
| GGAAAATGTGGTTGTGAAGG+AGG | + | chr2_2:55646794-55646813 | None:intergenic | 45.0% | |
| CAAAAGTAACGTGTGCGACA+TGG | + | chr2_2:55646925-55646944 | None:intergenic | 45.0% | |
| TGCATATACCTAGCACTAGG+AGG | + | chr2_2:55647007-55647026 | None:intergenic | 45.0% | |
| GTATGTTCAAGAAGGGTTGC+AGG | - | chr2_2:55647590-55647609 | Msa0258960:intron | 45.0% | |
| AAGGACCAGTGTTCAAACTC+CGG | + | chr2_2:55648362-55648381 | None:intergenic | 45.0% | |
| TGAAGCTGCACTCTTGGATT+GGG | - | chr2_2:55648718-55648737 | Msa0258960:intron | 45.0% | |
| GGATTGGGCCATCAATCTAA+TGG | - | chr2_2:55648733-55648752 | Msa0258960:intron | 45.0% | |
| CATGTTTGGCGCAAAAACCA+TGG | + | chr2_2:55648810-55648829 | None:intergenic | 45.0% | |
| ! | TTTTGCGCCAAACATGACTC+AGG | - | chr2_2:55648814-55648833 | Msa0258960:intron | 45.0% |
| GAACAGACCTGAGTCATGTT+TGG | + | chr2_2:55648824-55648843 | None:intergenic | 45.0% | |
| GCGTACATCAATGCAGTGAA+TGG | + | chr2_2:55648981-55649000 | None:intergenic | 45.0% | |
| AAGGACGCTACGAGAAAGAA+AGG | - | chr2_2:55649037-55649056 | Msa0258960:CDS | 45.0% | |
| CGGTGTACATTCTCATCAGA+AGG | + | chr2_2:55649101-55649120 | None:intergenic | 45.0% | |
| GTTTCCTCCGAAAAGAAACG+TGG | - | chr2_2:55649319-55649338 | Msa0258960:CDS | 45.0% | |
| TTCCTCCGAAAAGAAACGTG+GGG | - | chr2_2:55649321-55649340 | Msa0258960:CDS | 45.0% | |
| GTGGGGAAGAATAACAAGTC+TGG | - | chr2_2:55649338-55649357 | Msa0258960:CDS | 45.0% | |
| GGACAACAACCTGTGATCAA+TGG | - | chr2_2:55649407-55649426 | Msa0258960:five_prime_UTR | 45.0% | |
| !! | AAAATAAAAAAAAGTTTAAT+TGG | + | chr2_2:55648846-55648865 | None:intergenic | 5.0% |
| !!! | AATTAAACTTTTTTTTATTT+TGG | - | chr2_2:55648845-55648864 | Msa0258960:intron | 5.0% |
| CAGTGTTCAAACTCCGGTGA+AGG | + | chr2_2:55648356-55648375 | None:intergenic | 50.0% | |
| CTTCACCGGAGTTTGAACAC+TGG | - | chr2_2:55648354-55648373 | Msa0258960:intron | 50.0% | |
| TGGTTTCGGGAACTTCCTAG+CGG | - | chr2_2:55648608-55648627 | Msa0258960:intron | 50.0% | |
| ! | AAGAGTGCAGCTTCAGCATG+AGG | + | chr2_2:55648713-55648732 | None:intergenic | 50.0% |
| TCATGCTGAAGCTGCACTCT+TGG | - | chr2_2:55648712-55648731 | Msa0258960:intron | 50.0% | |
| CTGAAGCTGCACTCTTGGAT+TGG | - | chr2_2:55648717-55648736 | Msa0258960:intron | 50.0% | |
| TGCAGCAGCAGACAATGAAG+AGG | - | chr2_2:55649154-55649173 | Msa0258960:CDS | 50.0% | |
| ! | TTCCCCACGTTTCTTTTCGG+AGG | + | chr2_2:55649326-55649345 | None:intergenic | 50.0% |
| CGGTCGAGAAAAAGGGAATG+AGG | - | chr2_2:55649438-55649457 | Msa0258960:five_prime_UTR | 50.0% | |
| ! | ACATGGCGCACGTTTGTTGG+AGG | + | chr2_2:55646908-55646927 | None:intergenic | 55.0% |
| ! | GGAGGCCTTCTGGGAAAATC+AGG | + | chr2_2:55646989-55647008 | None:intergenic | 55.0% |
| CTAGCACTAGGAGGCCTTCT+GGG | + | chr2_2:55646998-55647017 | None:intergenic | 55.0% | |
| AATGAGTCCAGAACGCCGCT+AGG | + | chr2_2:55648626-55648645 | None:intergenic | 55.0% | |
| GATCAGACCGAGTCGAAGCT+TGG | - | chr2_2:55649483-55649502 | Msa0258960:five_prime_UTR | 55.0% | |
| TTCACCGCCAAGCTTCGACT+CGG | + | chr2_2:55649493-55649512 | None:intergenic | 55.0% | |
| GCGACATGGCGCACGTTTGT+TGG | + | chr2_2:55646911-55646930 | None:intergenic | 60.0% | |
| CCTAGCACTAGGAGGCCTTC+TGG | + | chr2_2:55646999-55647018 | None:intergenic | 60.0% | |
| CCAGAAGGCCTCCTAGTGCT+AGG | - | chr2_2:55646996-55647015 | Msa0258960:CDS | 60.0% | |
| GGAACTTCCTAGCGGCGTTC+TGG | - | chr2_2:55648616-55648635 | Msa0258960:intron | 60.0% | |
| GAACGCGCGCAACATTGCCA+TGG | - | chr2_2:55648790-55648809 | Msa0258960:intron | 60.0% | |
| CAGACCGAGTCGAAGCTTGG+CGG | - | chr2_2:55649486-55649505 | Msa0258960:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 55646269 | 55649751 | 55646269 | ID=Msa0258960;Name=Msa0258960 |
| chr2_2 | mRNA | 55646269 | 55649751 | 55646269 | ID=Msa0258960-mRNA-1;Parent=Msa0258960;Name=Msa0258960-mRNA-1;_AED=0.17;_eAED=0.17;_QI=393|1|1|1|1|1|5|240|456 |
| chr2_2 | exon | 55646269 | 55647051 | 55646269 | ID=Msa0258960-mRNA-1:exon:16820;Parent=Msa0258960-mRNA-1 |
| chr2_2 | exon | 55647185 | 55647415 | 55647185 | ID=Msa0258960-mRNA-1:exon:16819;Parent=Msa0258960-mRNA-1 |
| chr2_2 | exon | 55648181 | 55648300 | 55648181 | ID=Msa0258960-mRNA-1:exon:16818;Parent=Msa0258960-mRNA-1 |
| chr2_2 | exon | 55648409 | 55648529 | 55648409 | ID=Msa0258960-mRNA-1:exon:16817;Parent=Msa0258960-mRNA-1 |
| chr2_2 | exon | 55649003 | 55649751 | 55649003 | ID=Msa0258960-mRNA-1:exon:16816;Parent=Msa0258960-mRNA-1 |
| chr2_2 | five_prime_UTR | 55649359 | 55649751 | 55649359 | ID=Msa0258960-mRNA-1:five_prime_utr;Parent=Msa0258960-mRNA-1 |
| chr2_2 | CDS | 55649003 | 55649358 | 55649003 | ID=Msa0258960-mRNA-1:cds;Parent=Msa0258960-mRNA-1 |
| chr2_2 | CDS | 55648409 | 55648529 | 55648409 | ID=Msa0258960-mRNA-1:cds;Parent=Msa0258960-mRNA-1 |
| chr2_2 | CDS | 55648181 | 55648300 | 55648181 | ID=Msa0258960-mRNA-1:cds;Parent=Msa0258960-mRNA-1 |
| chr2_2 | CDS | 55647185 | 55647415 | 55647185 | ID=Msa0258960-mRNA-1:cds;Parent=Msa0258960-mRNA-1 |
| chr2_2 | CDS | 55646509 | 55647051 | 55646509 | ID=Msa0258960-mRNA-1:cds;Parent=Msa0258960-mRNA-1 |
| chr2_2 | three_prime_UTR | 55646269 | 55646508 | 55646269 | ID=Msa0258960-mRNA-1:three_prime_utr;Parent=Msa0258960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
