Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040370 | sp|Q43317|CYSK_CITLA | 85.538 | 325 | 47 | 0 | 1 | 325 | 1 | 325 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040370 | Msa0135120 | 0.898304 | 6.051559e-77 | -8.615850e-47 |
| Msa0040370 | Msa0504310 | 0.812198 | 4.782668e-51 | -8.615850e-47 |
| Msa0040370 | Msa1203320 | 0.804201 | 2.420386e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040370 | MtrunA17_Chr1g0205381 | 98.154 | 325 | 6 | 0 | 1 | 325 | 1 | 325 | 0.0 | 634 |
| Msa0040370 | MtrunA17_Chr5g0394491 | 94.462 | 325 | 18 | 0 | 1 | 325 | 1 | 325 | 0.0 | 572 |
| Msa0040370 | MtrunA17_Chr1g0191041 | 87.963 | 324 | 39 | 0 | 1 | 324 | 1 | 324 | 0.0 | 532 |
| Msa0040370 | MtrunA17_Chr4g0045721 | 71.069 | 318 | 92 | 0 | 8 | 325 | 47 | 364 | 4.75e-170 | 476 |
| Msa0040370 | MtrunA17_Chr1g0191051 | 72.897 | 321 | 87 | 0 | 4 | 324 | 3 | 323 | 5.95e-165 | 462 |
| Msa0040370 | MtrunA17_Chr4g0045781 | 73.684 | 323 | 85 | 0 | 3 | 325 | 61 | 383 | 9.58e-165 | 464 |
| Msa0040370 | MtrunA17_Chr4g0045771 | 66.667 | 318 | 97 | 2 | 8 | 325 | 47 | 355 | 4.13e-157 | 443 |
| Msa0040370 | MtrunA17_Chr1g0191061 | 64.067 | 359 | 83 | 2 | 12 | 324 | 25 | 383 | 4.12e-147 | 419 |
| Msa0040370 | MtrunA17_Chr7g0248021 | 62.025 | 316 | 120 | 0 | 6 | 321 | 59 | 374 | 2.27e-143 | 409 |
| Msa0040370 | MtrunA17_Chr7g0254401 | 63.175 | 315 | 106 | 1 | 7 | 321 | 64 | 368 | 2.27e-135 | 389 |
| Msa0040370 | MtrunA17_Chr1g0191071 | 67.286 | 269 | 83 | 1 | 56 | 324 | 1 | 264 | 1.01e-114 | 332 |
| Msa0040370 | MtrunA17_Chr5g0446431 | 29.178 | 353 | 191 | 6 | 12 | 307 | 48 | 398 | 4.66e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040370 | AT4G14880.5 | 81.818 | 319 | 58 | 0 | 6 | 324 | 3 | 321 | 0.0 | 512 |
| Msa0040370 | AT4G14880.3 | 81.818 | 319 | 58 | 0 | 6 | 324 | 3 | 321 | 0.0 | 512 |
| Msa0040370 | AT4G14880.4 | 81.818 | 319 | 58 | 0 | 6 | 324 | 3 | 321 | 0.0 | 512 |
| Msa0040370 | AT4G14880.2 | 81.818 | 319 | 58 | 0 | 6 | 324 | 3 | 321 | 0.0 | 512 |
| Msa0040370 | AT4G14880.1 | 81.818 | 319 | 58 | 0 | 6 | 324 | 3 | 321 | 0.0 | 512 |
| Msa0040370 | AT3G59760.3 | 75.157 | 318 | 79 | 0 | 7 | 324 | 112 | 429 | 7.06e-165 | 466 |
| Msa0040370 | AT3G59760.1 | 75.157 | 318 | 79 | 0 | 7 | 324 | 112 | 429 | 1.01e-164 | 466 |
| Msa0040370 | AT2G43750.1 | 74.845 | 322 | 81 | 0 | 3 | 324 | 70 | 391 | 3.03e-164 | 463 |
| Msa0040370 | AT2G43750.2 | 74.845 | 322 | 81 | 0 | 3 | 324 | 70 | 391 | 3.03e-164 | 463 |
| Msa0040370 | AT3G04940.1 | 68.519 | 324 | 102 | 0 | 1 | 324 | 1 | 324 | 1.66e-156 | 441 |
| Msa0040370 | AT3G04940.2 | 68.519 | 324 | 102 | 0 | 1 | 324 | 1 | 324 | 1.66e-156 | 441 |
| Msa0040370 | AT5G28020.2 | 71.340 | 321 | 92 | 0 | 4 | 324 | 3 | 323 | 1.88e-155 | 438 |
| Msa0040370 | AT5G28020.4 | 71.340 | 321 | 92 | 0 | 4 | 324 | 3 | 323 | 1.88e-155 | 438 |
| Msa0040370 | AT5G28020.1 | 71.340 | 321 | 92 | 0 | 4 | 324 | 3 | 323 | 1.88e-155 | 438 |
| Msa0040370 | AT5G28020.3 | 71.340 | 321 | 92 | 0 | 4 | 324 | 3 | 323 | 1.88e-155 | 438 |
| Msa0040370 | AT5G28020.6 | 71.340 | 321 | 92 | 0 | 4 | 324 | 3 | 323 | 1.88e-155 | 438 |
| Msa0040370 | AT3G59760.2 | 76.207 | 290 | 69 | 0 | 7 | 296 | 112 | 401 | 6.10e-150 | 428 |
| Msa0040370 | AT3G22460.1 | 77.037 | 270 | 42 | 1 | 56 | 325 | 1 | 250 | 5.60e-149 | 419 |
| Msa0040370 | AT5G28030.1 | 68.847 | 321 | 100 | 0 | 4 | 324 | 3 | 323 | 2.14e-146 | 415 |
| Msa0040370 | AT5G28030.4 | 68.847 | 321 | 100 | 0 | 4 | 324 | 3 | 323 | 2.14e-146 | 415 |
| Msa0040370 | AT5G28030.5 | 68.847 | 321 | 100 | 0 | 4 | 324 | 3 | 323 | 2.14e-146 | 415 |
| Msa0040370 | AT5G28030.2 | 68.847 | 321 | 100 | 0 | 4 | 324 | 3 | 323 | 2.14e-146 | 415 |
| Msa0040370 | AT3G61440.1 | 61.859 | 312 | 119 | 0 | 10 | 321 | 51 | 362 | 1.37e-135 | 390 |
| Msa0040370 | AT3G03630.1 | 61.875 | 320 | 112 | 1 | 4 | 323 | 95 | 404 | 1.88e-131 | 380 |
| Msa0040370 | AT3G61440.2 | 63.158 | 266 | 98 | 0 | 56 | 321 | 1 | 266 | 1.73e-117 | 340 |
| Msa0040370 | AT3G22460.2 | 86.188 | 181 | 25 | 0 | 8 | 188 | 8 | 188 | 3.71e-113 | 326 |
| Msa0040370 | AT5G28030.3 | 66.935 | 248 | 82 | 0 | 4 | 251 | 3 | 250 | 3.57e-112 | 326 |
| Msa0040370 | AT3G61440.4 | 60.305 | 262 | 104 | 0 | 10 | 271 | 51 | 312 | 3.40e-109 | 321 |
| Msa0040370 | AT5G28020.5 | 70.042 | 237 | 71 | 0 | 88 | 324 | 1 | 237 | 1.09e-103 | 303 |
| Msa0040370 | AT3G61440.3 | 62.083 | 240 | 91 | 0 | 82 | 321 | 2 | 241 | 3.67e-103 | 303 |
| Msa0040370 | AT1G55880.1 | 28.177 | 362 | 200 | 7 | 4 | 307 | 36 | 395 | 1.41e-39 | 144 |
| Msa0040370 | AT1G55880.2 | 30.833 | 240 | 124 | 4 | 12 | 210 | 44 | 282 | 5.85e-33 | 125 |
Find 105 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAAATAGGCCTTCTTTA+AGG | 0.116413 | 1_1:+70527177 | None:intergenic |
| AATAAAATGTAACAACAAAT+TGG | 0.175999 | 1_1:+70529748 | None:intergenic |
| AGAACCATTCTTCTATCTTT+TGG | 0.182076 | 1_1:-70528363 | Msa0040370:CDS |
| GCCCCTTTCATTCCCTTTGC+AGG | 0.215231 | 1_1:+70528318 | None:intergenic |
| TTTATATTATGCAGCTGTTT+GGG | 0.243063 | 1_1:-70527872 | Msa0040370:intron |
| TGCTGCCAAACTGGAATTAA+TGG | 0.244427 | 1_1:-70529128 | Msa0040370:CDS |
| ATCAATACCGATTCAGATTT+CGG | 0.253118 | 1_1:+70526734 | None:intergenic |
| ACTAAAGATGACCTTGATAT+TGG | 0.278605 | 1_1:+70527997 | None:intergenic |
| GGGCATCGGATTGGCCTTCT+TGG | 0.298899 | 1_1:-70528445 | Msa0040370:CDS |
| CGGCCTTCAACTGGAATTCA+TGG | 0.299101 | 1_1:+70526754 | None:intergenic |
| GATGCATTTGTTAGTGGTAT+AGG | 0.323643 | 1_1:-70528070 | Msa0040370:CDS |
| ACTCACTTCTGTAACATCTT+TGG | 0.326839 | 1_1:+70529320 | None:intergenic |
| TACAAATAGGCCTTCTTTAA+GGG | 0.332946 | 1_1:+70527178 | None:intergenic |
| TGCCACTTGTTGGCTCAATA+AGG | 0.334733 | 1_1:+70528472 | None:intergenic |
| TTCAGATTTCGGCCTTCAAC+TGG | 0.345908 | 1_1:+70526745 | None:intergenic |
| ATAAAATGTAACAACAAATT+GGG | 0.353699 | 1_1:+70529749 | None:intergenic |
| GGCATATGACTTGTAAGTTT+TGG | 0.357123 | 1_1:+70529825 | None:intergenic |
| TTCAAATTGCTGAAGGATAT+AGG | 0.362222 | 1_1:+70528254 | None:intergenic |
| ATATTTCCCAACACCTGTTA+TGG | 0.367102 | 1_1:+70528036 | None:intergenic |
| AAACCACTGGTCCAGAGATA+TGG | 0.372068 | 1_1:-70528114 | Msa0040370:CDS |
| TGCTCGAGTTGCTGCCAAAC+TGG | 0.377214 | 1_1:-70529137 | Msa0040370:CDS |
| ATAGATACCTTTGGATTGGC+AGG | 0.410843 | 1_1:+70528228 | None:intergenic |
| AAAGTTGATGCATTTGTTAG+TGG | 0.411743 | 1_1:-70528076 | Msa0040370:CDS |
| TGCTGAAGGATATAGGCATT+TGG | 0.414477 | 1_1:+70528261 | None:intergenic |
| ATGCCCGTATTGCCACTTGT+TGG | 0.417507 | 1_1:+70528462 | None:intergenic |
| CCTGTGCCTTTCCATATCTC+TGG | 0.417592 | 1_1:+70528103 | None:intergenic |
| AATGATAAGCTTGTAGCCTT+TGG | 0.418235 | 1_1:+70528416 | None:intergenic |
| TCTGAATCGGTATTGATAGA+TGG | 0.418758 | 1_1:-70526728 | Msa0040370:three_prime_UTR |
| GGTACTGGTGGTACCATAAC+AGG | 0.426966 | 1_1:-70528049 | Msa0040370:CDS |
| GTTGAATACAGAATAGATTC+AGG | 0.432685 | 1_1:+70526614 | None:intergenic |
| ATCTTCTGTGCTGTTTGAAT+CGG | 0.434360 | 1_1:-70526809 | Msa0040370:CDS |
| CTTTCAAGACTCATTGAAGC+AGG | 0.439398 | 1_1:+70528387 | None:intergenic |
| GAACCATGAATTCCAGTTGA+AGG | 0.440518 | 1_1:-70526757 | Msa0040370:exon |
| GATATAGGCATTTGGAGTCT+TGG | 0.449955 | 1_1:+70528269 | None:intergenic |
| AGCTGCTGCAGCAGCTCCAG+AGG | 0.454114 | 1_1:+70527033 | None:intergenic |
| TTTAGTTGTAAAGTGAGAGT+TGG | 0.457033 | 1_1:-70526492 | Msa0040370:three_prime_UTR |
| AAGCTTCTTGCCCTTAAAGA+AGG | 0.457267 | 1_1:-70527188 | Msa0040370:CDS |
| GACAGTACAGGACTTTCAAC+TGG | 0.465463 | 1_1:+70527843 | None:intergenic |
| TGGTTCCATTAATTCCAGTT+TGG | 0.469327 | 1_1:+70529123 | None:intergenic |
| ATTCAAACAGCACAGAAGAT+AGG | 0.476594 | 1_1:+70526812 | None:intergenic |
| GAATTCATGGTTCAAAAGTC+AGG | 0.476630 | 1_1:+70526767 | None:intergenic |
| TGAGCCAACAAGTGGCAATA+CGG | 0.481402 | 1_1:-70528466 | Msa0040370:CDS |
| AAGATTCAAGGGATTGGTGC+TGG | 0.484894 | 1_1:-70527697 | Msa0040370:CDS |
| GCCTTTGGCTGCTGCCAAGA+AGG | 0.490662 | 1_1:+70528431 | None:intergenic |
| GATTGCTGATGCAGAGGAGA+AGG | 0.491875 | 1_1:-70528936 | Msa0040370:CDS |
| TGGACTTTCATTATATGTCA+TGG | 0.496783 | 1_1:-70526472 | Msa0040370:three_prime_UTR |
| AGAGCAAAATTCCAATATCA+AGG | 0.499203 | 1_1:-70528008 | Msa0040370:intron |
| AGGTACCTCTCACCAAAGCT+AGG | 0.500820 | 1_1:+70526832 | None:intergenic |
| ACCATGGCAGTTGAAAGGTC+TGG | 0.505654 | 1_1:-70529348 | Msa0040370:CDS |
| GTAGATAGATACCTTTGGAT+TGG | 0.506283 | 1_1:+70528224 | None:intergenic |
| TTTGTTAGTGGTATAGGTAC+TGG | 0.507290 | 1_1:-70528064 | Msa0040370:CDS |
| CTAGGTCCACACAAGATTCA+AGG | 0.507556 | 1_1:-70527709 | Msa0040370:intron |
| GGGACTAATTACGCCTGGCC+AGG | 0.509762 | 1_1:-70528915 | Msa0040370:intron |
| TGGCAATACGGGCATCGGAT+TGG | 0.510586 | 1_1:-70528454 | Msa0040370:CDS |
| CCACACAAGATTCAAGGGAT+TGG | 0.512912 | 1_1:-70527703 | Msa0040370:CDS |
| GCCTTCTTGGCAGCAGCCAA+AGG | 0.516788 | 1_1:-70528432 | Msa0040370:CDS |
| TGCTGTTTGAATCGGTGAGA+CGG | 0.517705 | 1_1:-70526801 | Msa0040370:CDS |
| GTACTGTCCGGAGGAAAGCC+TGG | 0.517823 | 1_1:-70527828 | Msa0040370:intron |
| TAACAAGTACCAACCTGGCC+AGG | 0.519163 | 1_1:+70528902 | None:intergenic |
| TCCAGACCTTTCAACTGCCA+TGG | 0.522956 | 1_1:+70529347 | None:intergenic |
| GAGCCAACAAGTGGCAATAC+GGG | 0.523351 | 1_1:-70528465 | Msa0040370:CDS |
| ACAAGTGGCAATACGGGCAT+CGG | 0.529614 | 1_1:-70528459 | Msa0040370:CDS |
| TATTATGCAGCTGTTTGGGG+TGG | 0.530340 | 1_1:-70527868 | Msa0040370:intron |
| TAACTAACCAGGCTTTCCTC+CGG | 0.534921 | 1_1:+70527821 | None:intergenic |
| GGCTTTCCTCCGGACAGTAC+AGG | 0.535171 | 1_1:+70527831 | None:intergenic |
| GATCCTGCAAAGGGAATGAA+AGG | 0.537784 | 1_1:-70528321 | Msa0040370:CDS |
| GTGGTACCATAACAGGTGTT+GGG | 0.539844 | 1_1:-70528042 | Msa0040370:CDS |
| TTTCCATATCTCTGGACCAG+TGG | 0.541184 | 1_1:+70528111 | None:intergenic |
| GGTAATTCAGAAACGCAACC+TGG | 0.543535 | 1_1:+70526689 | None:intergenic |
| TTATATTATGCAGCTGTTTG+GGG | 0.546665 | 1_1:-70527871 | Msa0040370:intron |
| TAAAATGTAACAACAAATTG+GGG | 0.548045 | 1_1:+70529750 | None:intergenic |
| GGTGGTACCATAACAGGTGT+TGG | 0.549091 | 1_1:-70528043 | Msa0040370:CDS |
| TTGAAGGCCGAAATCTGAAT+CGG | 0.552563 | 1_1:-70526741 | Msa0040370:three_prime_UTR |
| AGCTCCAAAAGATAGAAGAA+TGG | 0.556491 | 1_1:+70528359 | None:intergenic |
| GTTGAAAGTCCTGTACTGTC+CGG | 0.559552 | 1_1:-70527840 | Msa0040370:CDS |
| GAGAAGGGACTAATTACGCC+TGG | 0.562602 | 1_1:-70528920 | Msa0040370:CDS |
| GCTGTTTGAATCGGTGAGAC+GGG | 0.567929 | 1_1:-70526800 | Msa0040370:CDS |
| CTGAAACCATGGCAGTTGAA+AGG | 0.570234 | 1_1:-70529353 | Msa0040370:exon |
| CATGCTCTAGTGTAAAAGAC+AGG | 0.572827 | 1_1:-70529102 | Msa0040370:intron |
| GTTCTGACAGATCCTGCAAA+GGG | 0.575035 | 1_1:-70528330 | Msa0040370:CDS |
| TAGATACCTTTGGATTGGCA+GGG | 0.577990 | 1_1:+70528229 | None:intergenic |
| ATCCTGCAAAGGGAATGAAA+GGG | 0.578172 | 1_1:-70528320 | Msa0040370:CDS |
| GGTGTAGTGAGCTGAAACCA+TGG | 0.585176 | 1_1:-70529364 | Msa0040370:intron |
| GTCCTTATTGAGCCAACAAG+TGG | 0.589600 | 1_1:-70528474 | Msa0040370:CDS |
| CCAGAGATATGGAAAGGCAC+AGG | 0.593497 | 1_1:-70528103 | Msa0040370:CDS |
| AGTATATCTGAATAAAATCA+CGG | 0.598658 | 1_1:-70529170 | Msa0040370:CDS |
| GAGATATGGAAAGGCACAGG+AGG | 0.606059 | 1_1:-70528100 | Msa0040370:CDS |
| ATTGCTGATGCAGAGGAGAA+GGG | 0.608166 | 1_1:-70528935 | Msa0040370:CDS |
| TAGTATGATTGCTGATGCAG+AGG | 0.611040 | 1_1:-70528942 | Msa0040370:CDS |
| TGAAAACCCTGCCAATCCAA+AGG | 0.611571 | 1_1:-70528235 | Msa0040370:intron |
| TAGGTCCACACAAGATTCAA+GGG | 0.617279 | 1_1:-70527708 | Msa0040370:CDS |
| TATCTGAATAAAATCACGGA+TGG | 0.622319 | 1_1:-70529166 | Msa0040370:CDS |
| GGTTCTGACAGATCCTGCAA+AGG | 0.622378 | 1_1:-70528331 | Msa0040370:CDS |
| CCAATCCCTTGAATCTTGTG+TGG | 0.626382 | 1_1:+70527703 | None:intergenic |
| GGTACCTCTCACCAAAGCTA+GGG | 0.626738 | 1_1:+70526833 | None:intergenic |
| AGACTAACGTCCAATACCCC+AGG | 0.626927 | 1_1:+70527667 | None:intergenic |
| CAGGTGCATTATGAAACCAC+TGG | 0.627492 | 1_1:-70528127 | Msa0040370:CDS |
| TTTATTCAGATATACTAATG+GGG | 0.635434 | 1_1:+70529177 | None:intergenic |
| GTTAGTGGTATAGGTACTGG+TGG | 0.642131 | 1_1:-70528061 | Msa0040370:CDS |
| TCCTGCAAAGGGAATGAAAG+GGG | 0.649085 | 1_1:-70528319 | Msa0040370:CDS |
| AGATATGGAAAGGCACAGGA+GGG | 0.656003 | 1_1:-70528099 | Msa0040370:CDS |
| ACTGGTCCAGAGATATGGAA+AGG | 0.666229 | 1_1:-70528109 | Msa0040370:CDS |
| GAAAGTCCTGTACTGTCCGG+AGG | 0.670657 | 1_1:-70527837 | Msa0040370:CDS |
| GTTTGAATCGGTGAGACGGG+AGG | 0.688551 | 1_1:-70526797 | Msa0040370:CDS |
| AAAATGTAACAACAAATTGG+GGG | 0.704198 | 1_1:+70529751 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTTTTTTTTTTTGA+GGG | + | chr1_1:70526481-70526500 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTTTTTTTTTTG+AGG | + | chr1_1:70526482-70526501 | None:intergenic | 10.0% |
| !!! | TTATTTTTGTTTTAATATGA+CGG | - | chr1_1:70526818-70526837 | Msa0040370:CDS | 10.0% |
| !!! | ATAAAAATATTTTGAATATC+TGG | - | chr1_1:70529342-70529361 | Msa0040370:CDS | 10.0% |
| !!! | TAAATTTAGTTTTATAGAAA+AGG | + | chr1_1:70529730-70529749 | None:intergenic | 10.0% |
| !! | ATAAAATGTAACAACAAATT+GGG | + | chr1_1:70526529-70526548 | None:intergenic | 15.0% |
| !! | AATAAAATGTAACAACAAAT+TGG | + | chr1_1:70526530-70526549 | None:intergenic | 15.0% |
| !! | AAAATATTTCAGAGAATTAA+GGG | + | chr1_1:70526605-70526624 | None:intergenic | 15.0% |
| !! | AAAAATATTTCAGAGAATTA+AGG | + | chr1_1:70526606-70526625 | None:intergenic | 15.0% |
| !! | GTAATAATTAATCAAAATTC+AGG | + | chr1_1:70526773-70526792 | None:intergenic | 15.0% |
| !! | TAAGAAACATTTAATTAGAA+AGG | + | chr1_1:70527024-70527043 | None:intergenic | 15.0% |
| !!! | TTTTATTCAGATATACTAAT+GGG | + | chr1_1:70527102-70527121 | None:intergenic | 15.0% |
| !!! | ATTTTATTCAGATATACTAA+TGG | + | chr1_1:70527103-70527122 | None:intergenic | 15.0% |
| !! | ATTTATAACATAAATTGCAA+AGG | + | chr1_1:70527300-70527319 | None:intergenic | 15.0% |
| !! | TAAAACAATATTCATATTAG+AGG | + | chr1_1:70529211-70529230 | None:intergenic | 15.0% |
| !!! | TCTAATATGAATATTGTTTT+AGG | - | chr1_1:70529210-70529229 | Msa0040370:intron | 15.0% |
| !! | GTATGTTATAGAAAAAAAAA+GGG | - | chr1_1:70529373-70529392 | Msa0040370:intron | 15.0% |
| !!! | TTCTTTTGAAATAACTTTTA+TGG | + | chr1_1:70529610-70529629 | None:intergenic | 15.0% |
| !! | TAAAATGTAACAACAAATTG+GGG | + | chr1_1:70526528-70526547 | None:intergenic | 20.0% |
| !!! | TATTGTCATCATTTTTCATA+AGG | - | chr1_1:70526562-70526581 | Msa0040370:intron | 20.0% |
| !! | TAATTAAATGTTTCTTACTG+TGG | - | chr1_1:70527027-70527046 | Msa0040370:CDS | 20.0% |
| !!! | GTTTATTTTGTATAGTTGAT+CGG | - | chr1_1:70527070-70527089 | Msa0040370:intron | 20.0% |
| !! | TTTATTCAGATATACTAATG+GGG | + | chr1_1:70527101-70527120 | None:intergenic | 20.0% |
| !! | AGTATATCTGAATAAAATCA+CGG | - | chr1_1:70527105-70527124 | Msa0040370:intron | 20.0% |
| !!! | CTCATATATTATTTGAGTTT+TGG | - | chr1_1:70527223-70527242 | Msa0040370:intron | 20.0% |
| !! | GCAATTTATGTTATAAATGT+AGG | - | chr1_1:70527302-70527321 | Msa0040370:intron | 20.0% |
| !! | TTATGTTATAAATGTAGGAT+TGG | - | chr1_1:70527307-70527326 | Msa0040370:intron | 20.0% |
| !! | TTGAAACAAAACAAGAAATT+AGG | + | chr1_1:70528381-70528400 | None:intergenic | 20.0% |
| !! | AAGATATATTTAGGTATCAA+AGG | + | chr1_1:70528716-70528735 | None:intergenic | 20.0% |
| !! | CAAGTCATTAAGATATATTT+AGG | + | chr1_1:70528725-70528744 | None:intergenic | 20.0% |
| !! | AGTTAAATTATTTGAGAGAA+TGG | + | chr1_1:70528830-70528849 | None:intergenic | 20.0% |
| !! | AATTTAACTGTTAAAGTTTC+TGG | - | chr1_1:70528841-70528860 | Msa0040370:intron | 20.0% |
| !!! | TTGTGAATGTAATTTTTAGA+TGG | - | chr1_1:70528951-70528970 | Msa0040370:CDS | 20.0% |
| !!! | ATGTCTTTTTGCAATTTTTT+TGG | - | chr1_1:70528983-70529002 | Msa0040370:intron | 20.0% |
| !!! | ATATGAATATTGTTTTAGGT+TGG | - | chr1_1:70529214-70529233 | Msa0040370:intron | 20.0% |
| !! | GGTATGTTATAGAAAAAAAA+AGG | - | chr1_1:70529372-70529391 | Msa0040370:intron | 20.0% |
| !!! | TGACAATTTTCATTTTGATA+TGG | - | chr1_1:70529406-70529425 | Msa0040370:intron | 20.0% |
| ! | AAAATGTAACAACAAATTGG+GGG | + | chr1_1:70526527-70526546 | None:intergenic | 25.0% |
| ! | AAAAATGATGACAATAGCTT+AGG | + | chr1_1:70526558-70526577 | None:intergenic | 25.0% |
| !!! | CATTGATTTTCTTTTTTCTG+TGG | - | chr1_1:70526738-70526757 | Msa0040370:three_prime_UTR | 25.0% |
| ! | CAAAATAAACAACAGACATT+AGG | + | chr1_1:70527060-70527079 | None:intergenic | 25.0% |
| ! | TAAAAGACAGGTAATCATTT+AGG | - | chr1_1:70527185-70527204 | Msa0040370:CDS | 25.0% |
| ! | AGATTAAAATGAAAGTTCGT+AGG | - | chr1_1:70527397-70527416 | Msa0040370:intron | 25.0% |
| !! | CAACTTTTATGTTGAATACT+AGG | - | chr1_1:70527506-70527525 | Msa0040370:intron | 25.0% |
| ! | TGAATACTAGGAAATATGAT+AGG | - | chr1_1:70527518-70527537 | Msa0040370:intron | 25.0% |
| ! | GAGAAATACTAGTACTAATT+TGG | - | chr1_1:70527544-70527563 | Msa0040370:intron | 25.0% |
| ! | TACAAAAGATTGTGAAATAG+CGG | + | chr1_1:70527654-70527673 | None:intergenic | 25.0% |
| ! | AAACAAAACAAGAAATTAGG+AGG | + | chr1_1:70528378-70528397 | None:intergenic | 25.0% |
| !! | TTTTATATTATGCAGCTGTT+TGG | - | chr1_1:70528402-70528421 | Msa0040370:CDS | 25.0% |
| ! | TTTATATTATGCAGCTGTTT+GGG | - | chr1_1:70528403-70528422 | Msa0040370:CDS | 25.0% |
| ! | GTTATAACTTATAACTAACC+AGG | + | chr1_1:70528468-70528487 | None:intergenic | 25.0% |
| !! | TCTCCTTTATCTTTTACTAT+TGG | - | chr1_1:70528771-70528790 | Msa0040370:intron | 25.0% |
| ! | AAGCCAATAGTAAAAGATAA+AGG | + | chr1_1:70528777-70528796 | None:intergenic | 25.0% |
| !! | ATTATTTGAGAGAATGGTTT+TGG | + | chr1_1:70528824-70528843 | None:intergenic | 25.0% |
| ! | TATGTAAGATTTAGTAAACC+AGG | + | chr1_1:70528901-70528920 | None:intergenic | 25.0% |
| !!! | ATTGATAGATGGATTTTCAT+TGG | - | chr1_1:70529558-70529577 | Msa0040370:intron | 25.0% |
| ! | ACTGATCAAAATAATTTCGT+TGG | - | chr1_1:70529696-70529715 | Msa0040370:intron | 25.0% |
| !!! | TTTTTTTTTTTGAGGGAGTG+TGG | + | chr1_1:70526474-70526493 | None:intergenic | 30.0% |
| ! | AATTGGGGGTATATATAATG+TGG | + | chr1_1:70526513-70526532 | None:intergenic | 30.0% |
| TCTAATCAGATATCTAAACC+AGG | - | chr1_1:70526650-70526669 | Msa0040370:three_prime_UTR | 30.0% | |
| CTAATCAGATATCTAAACCA+GGG | - | chr1_1:70526651-70526670 | Msa0040370:three_prime_UTR | 30.0% | |
| AATGTTACATTGATAAACCC+TGG | + | chr1_1:70526671-70526690 | None:intergenic | 30.0% | |
| CATTTACACAACACAGAAAA+AGG | + | chr1_1:70526701-70526720 | None:intergenic | 30.0% | |
| !!! | TTTCTTTTTTCTGTGGAATC+AGG | - | chr1_1:70526745-70526764 | Msa0040370:three_prime_UTR | 30.0% |
| TATCTGAATAAAATCACGGA+TGG | - | chr1_1:70527109-70527128 | Msa0040370:intron | 30.0% | |
| AAAATGAAAGTTCGTAGGAT+TGG | - | chr1_1:70527402-70527421 | Msa0040370:intron | 30.0% | |
| TTAACGATGTATAGTTCATC+TGG | + | chr1_1:70527472-70527491 | None:intergenic | 30.0% | |
| GTTTCTTAGTTCATTATCAC+TGG | - | chr1_1:70527568-70527587 | Msa0040370:intron | 30.0% | |
| AGTGTTATCACAGAAAATAG+TGG | - | chr1_1:70527592-70527611 | Msa0040370:intron | 30.0% | |
| ! | TTGTACTAAATAGAGCATCA+CGG | - | chr1_1:70527669-70527688 | Msa0040370:CDS | 30.0% |
| TATTTAACCAAACTGATCAC+TGG | - | chr1_1:70527744-70527763 | Msa0040370:intron | 30.0% | |
| ATATATACCAGTGATCAGTT+TGG | + | chr1_1:70527754-70527773 | None:intergenic | 30.0% | |
| ! | AGAACCATTCTTCTATCTTT+TGG | - | chr1_1:70527912-70527931 | Msa0040370:intron | 30.0% |
| TTCAAATTGCTGAAGGATAT+AGG | + | chr1_1:70528024-70528043 | None:intergenic | 30.0% | |
| AATGAGTAGATAGATACCTT+TGG | + | chr1_1:70528059-70528078 | None:intergenic | 30.0% | |
| ACTCATTTGTTCTACAACTT+TGG | - | chr1_1:70528072-70528091 | Msa0040370:CDS | 30.0% | |
| ! | TCTACAACTTTGGTAGTTAA+TGG | - | chr1_1:70528082-70528101 | Msa0040370:CDS | 30.0% |
| TAGTTAATGGTTGACAACTT+TGG | - | chr1_1:70528095-70528114 | Msa0040370:CDS | 30.0% | |
| GTTATCATCGTTGTATTTAC+AGG | - | chr1_1:70528129-70528148 | Msa0040370:intron | 30.0% | |
| !! | AAAGTTGATGCATTTGTTAG+TGG | - | chr1_1:70528199-70528218 | Msa0040370:intron | 30.0% |
| AGAGCAAAATTCCAATATCA+AGG | - | chr1_1:70528267-70528286 | Msa0040370:CDS | 30.0% | |
| ACTAAAGATGACCTTGATAT+TGG | + | chr1_1:70528281-70528300 | None:intergenic | 30.0% | |
| TTATATTATGCAGCTGTTTG+GGG | - | chr1_1:70528404-70528423 | Msa0040370:CDS | 30.0% | |
| ATCAAACTTAATACGTGATG+GGG | + | chr1_1:70528686-70528705 | None:intergenic | 30.0% | |
| CATCAAACTTAATACGTGAT+GGG | + | chr1_1:70528687-70528706 | None:intergenic | 30.0% | |
| TCATCAAACTTAATACGTGA+TGG | + | chr1_1:70528688-70528707 | None:intergenic | 30.0% | |
| !! | TTTACTATTGGCTTCCTAAA+TGG | - | chr1_1:70528783-70528802 | Msa0040370:intron | 30.0% |
| CACAAGATAAGTTTGTATTG+TGG | + | chr1_1:70528936-70528955 | None:intergenic | 30.0% | |
| TAAACCTGATATGTGTGATT+TGG | - | chr1_1:70529031-70529050 | Msa0040370:intron | 30.0% | |
| TACAAATAGGCCTTCTTTAA+GGG | + | chr1_1:70529100-70529119 | None:intergenic | 30.0% | |
| TTACAAATAGGCCTTCTTTA+AGG | + | chr1_1:70529101-70529120 | None:intergenic | 30.0% | |
| ! | TACTATTTTACTGTCGTACT+TGG | - | chr1_1:70529171-70529190 | Msa0040370:CDS | 30.0% |
| !! | TGGTCTTTTTGCTATCTTAA+TGG | + | chr1_1:70529269-70529288 | None:intergenic | 30.0% |
| !! | TTTTCATTTTGATATGGTGC+AGG | - | chr1_1:70529412-70529431 | Msa0040370:intron | 30.0% |
| !! | ATCAATACCGATTCAGATTT+CGG | + | chr1_1:70529544-70529563 | None:intergenic | 30.0% |
| GTTGAATACAGAATAGATTC+AGG | + | chr1_1:70529664-70529683 | None:intergenic | 30.0% | |
| TTTAGTTGTAAAGTGAGAGT+TGG | - | chr1_1:70529783-70529802 | Msa0040370:five_prime_UTR | 30.0% | |
| TGGACTTTCATTATATGTCA+TGG | - | chr1_1:70529803-70529822 | Msa0040370:five_prime_UTR | 30.0% | |
| TTGTGTAAATGCATGCATCA+TGG | - | chr1_1:70526710-70526729 | Msa0040370:three_prime_UTR | 35.0% | |
| TCTCGTATCCAATTGGATTA+AGG | - | chr1_1:70526845-70526864 | Msa0040370:intron | 35.0% | |
| CAAATGTGCCTTAATCCAAT+TGG | + | chr1_1:70526856-70526875 | None:intergenic | 35.0% | |
| CAATTGGATTAAGGCACATT+TGG | - | chr1_1:70526854-70526873 | Msa0040370:intron | 35.0% | |
| !!! | AGTTTGTCTTTGTTTTCCAG+TGG | - | chr1_1:70526890-70526909 | Msa0040370:intron | 35.0% |
| ACTCACTTCTGTAACATCTT+TGG | + | chr1_1:70526958-70526977 | None:intergenic | 35.0% | |
| TGGTTCCATTAATTCCAGTT+TGG | + | chr1_1:70527155-70527174 | None:intergenic | 35.0% | |
| ! | CGAGCAACATTCTTTTGAAT+TGG | - | chr1_1:70527258-70527277 | Msa0040370:intron | 35.0% |
| ATCTTTAACAAGTACCAACC+TGG | + | chr1_1:70527381-70527400 | None:intergenic | 35.0% | |
| GGTATATATGTTGTTGCATG+CGG | - | chr1_1:70527765-70527784 | Msa0040370:intron | 35.0% | |
| AATGATAAGCTTGTAGCCTT+TGG | + | chr1_1:70527862-70527881 | None:intergenic | 35.0% | |
| AGCTCCAAAAGATAGAAGAA+TGG | + | chr1_1:70527919-70527938 | None:intergenic | 35.0% | |
| GTAGATAGATACCTTTGGAT+TGG | + | chr1_1:70528054-70528073 | None:intergenic | 35.0% | |
| ! | GATGCATTTGTTAGTGGTAT+AGG | - | chr1_1:70528205-70528224 | Msa0040370:intron | 35.0% |
| TTTGTTAGTGGTATAGGTAC+TGG | - | chr1_1:70528211-70528230 | Msa0040370:intron | 35.0% | |
| ATATTTCCCAACACCTGTTA+TGG | + | chr1_1:70528242-70528261 | None:intergenic | 35.0% | |
| ACAACACTAAGTGCAAGATT+TGG | - | chr1_1:70528317-70528336 | Msa0040370:CDS | 35.0% | |
| ACAAGAAATTAGGAGGAAAG+AGG | + | chr1_1:70528371-70528390 | None:intergenic | 35.0% | |
| AATTGCCATGATAAACGTCT+AGG | - | chr1_1:70528548-70528567 | Msa0040370:intron | 35.0% | |
| !!! | TTTGAGAGAATGGTTTTGGT+AGG | + | chr1_1:70528820-70528839 | None:intergenic | 35.0% |
| AATGCACAAAAAGCCAATTG+TGG | - | chr1_1:70528866-70528885 | Msa0040370:intron | 35.0% | |
| !! | CAGGATTTTAAGTCCACAAT+TGG | + | chr1_1:70528882-70528901 | None:intergenic | 35.0% |
| CAATTGTGGACTTAAAATCC+TGG | - | chr1_1:70528880-70528899 | Msa0040370:intron | 35.0% | |
| !!! | TTTTAGGTTGGAATATCCTC+TGG | - | chr1_1:70529226-70529245 | Msa0040370:intron | 35.0% |
| ! | ATAAGCTTTCCAGCATTTTC+TGG | + | chr1_1:70529289-70529308 | None:intergenic | 35.0% |
| ! | TTTTGAATATCTGGCACAGT+TGG | - | chr1_1:70529351-70529370 | Msa0040370:exon | 35.0% |
| ATTCAAACAGCACAGAAGAT+AGG | + | chr1_1:70529466-70529485 | None:intergenic | 35.0% | |
| !! | ATCTTCTGTGCTGTTTGAAT+CGG | - | chr1_1:70529466-70529485 | Msa0040370:intron | 35.0% |
| GAATTCATGGTTCAAAAGTC+AGG | + | chr1_1:70529511-70529530 | None:intergenic | 35.0% | |
| !! | TCTGAATCGGTATTGATAGA+TGG | - | chr1_1:70529547-70529566 | Msa0040370:intron | 35.0% |
| ! | CGGATTTTCTCGTATCCAAT+TGG | - | chr1_1:70526838-70526857 | Msa0040370:CDS | 40.0% |
| TGCTGCCAAACTGGAATTAA+TGG | - | chr1_1:70527147-70527166 | Msa0040370:intron | 40.0% | |
| ! | CTGTCTTTTACACTAGAGCA+TGG | + | chr1_1:70527175-70527194 | None:intergenic | 40.0% |
| CATGCTCTAGTGTAAAAGAC+AGG | - | chr1_1:70527173-70527192 | Msa0040370:intron | 40.0% | |
| TAGTATGATTGCTGATGCAG+AGG | - | chr1_1:70527333-70527352 | Msa0040370:intron | 40.0% | |
| GCTATAACACTGTTGCATAG+CGG | + | chr1_1:70527630-70527649 | None:intergenic | 40.0% | |
| CTTTCAAGACTCATTGAAGC+AGG | + | chr1_1:70527891-70527910 | None:intergenic | 40.0% | |
| !!! | TCTATCTTTTGGAGCTGAGT+TGG | - | chr1_1:70527923-70527942 | Msa0040370:intron | 40.0% |
| ATCCTGCAAAGGGAATGAAA+GGG | - | chr1_1:70527955-70527974 | Msa0040370:intron | 40.0% | |
| ! | GATATAGGCATTTGGAGTCT+TGG | + | chr1_1:70528009-70528028 | None:intergenic | 40.0% |
| TGCTGAAGGATATAGGCATT+TGG | + | chr1_1:70528017-70528036 | None:intergenic | 40.0% | |
| ! | CAGGGTTTTCAAATTGCTGA+AGG | + | chr1_1:70528031-70528050 | None:intergenic | 40.0% |
| !! | TAGATACCTTTGGATTGGCA+GGG | + | chr1_1:70528049-70528068 | None:intergenic | 40.0% |
| !! | ATAGATACCTTTGGATTGGC+AGG | + | chr1_1:70528050-70528069 | None:intergenic | 40.0% |
| TCTTGCACTTAGTGTTGTCT+CGG | + | chr1_1:70528315-70528334 | None:intergenic | 40.0% | |
| AAATTAGGAGGAAAGAGGAG+AGG | + | chr1_1:70528366-70528385 | None:intergenic | 40.0% | |
| TAGGTCCACACAAGATTCAA+GGG | - | chr1_1:70528567-70528586 | Msa0040370:intron | 40.0% | |
| !! | AGGAAGGGTTTTAGCCATTT+AGG | + | chr1_1:70528800-70528819 | None:intergenic | 40.0% |
| !!! | GAGAATGGTTTTGGTAGGAA+GGG | + | chr1_1:70528815-70528834 | None:intergenic | 40.0% |
| !!! | AGAGAATGGTTTTGGTAGGA+AGG | + | chr1_1:70528816-70528835 | None:intergenic | 40.0% |
| TCTGCCAAATCACACATATC+AGG | + | chr1_1:70529038-70529057 | None:intergenic | 40.0% | |
| AAGCTTCTTGCCCTTAAAGA+AGG | - | chr1_1:70529087-70529106 | Msa0040370:intron | 40.0% | |
| CACGAACGAAGCTTACAAAT+AGG | + | chr1_1:70529113-70529132 | None:intergenic | 40.0% | |
| GCAAAAAGACCAGAAAATGC+TGG | - | chr1_1:70529277-70529296 | Msa0040370:intron | 40.0% | |
| GAACCATGAATTCCAGTTGA+AGG | - | chr1_1:70529518-70529537 | Msa0040370:intron | 40.0% | |
| TTGAAGGCCGAAATCTGAAT+CGG | - | chr1_1:70529534-70529553 | Msa0040370:intron | 40.0% | |
| CTGAAACCATGGCAGTTGAA+AGG | - | chr1_1:70526922-70526941 | Msa0040370:intron | 45.0% | |
| ATTGCTGATGCAGAGGAGAA+GGG | - | chr1_1:70527340-70527359 | Msa0040370:intron | 45.0% | |
| ATAGCAGCGCTATTGCTTAG+CGG | + | chr1_1:70527718-70527737 | None:intergenic | 45.0% | |
| GTCCTTATTGAGCCAACAAG+TGG | - | chr1_1:70527801-70527820 | Msa0040370:intron | 45.0% | |
| !! | TGCCACTTGTTGGCTCAATA+AGG | + | chr1_1:70527806-70527825 | None:intergenic | 45.0% |
| TGAGCCAACAAGTGGCAATA+CGG | - | chr1_1:70527809-70527828 | Msa0040370:intron | 45.0% | |
| GTTCTGACAGATCCTGCAAA+GGG | - | chr1_1:70527945-70527964 | Msa0040370:intron | 45.0% | |
| GATCCTGCAAAGGGAATGAA+AGG | - | chr1_1:70527954-70527973 | Msa0040370:intron | 45.0% | |
| TCCTGCAAAGGGAATGAAAG+GGG | - | chr1_1:70527956-70527975 | Msa0040370:intron | 45.0% | |
| TGAAAACCCTGCCAATCCAA+AGG | - | chr1_1:70528040-70528059 | Msa0040370:CDS | 45.0% | |
| CAGGTGCATTATGAAACCAC+TGG | - | chr1_1:70528148-70528167 | Msa0040370:intron | 45.0% | |
| AAACCACTGGTCCAGAGATA+TGG | - | chr1_1:70528161-70528180 | Msa0040370:intron | 45.0% | |
| TTTCCATATCTCTGGACCAG+TGG | + | chr1_1:70528167-70528186 | None:intergenic | 45.0% | |
| ACTGGTCCAGAGATATGGAA+AGG | - | chr1_1:70528166-70528185 | Msa0040370:intron | 45.0% | |
| ! | AGATATGGAAAGGCACAGGA+GGG | - | chr1_1:70528176-70528195 | Msa0040370:intron | 45.0% |
| !! | GTTAGTGGTATAGGTACTGG+TGG | - | chr1_1:70528214-70528233 | Msa0040370:intron | 45.0% |
| GTGGTACCATAACAGGTGTT+GGG | - | chr1_1:70528233-70528252 | Msa0040370:intron | 45.0% | |
| TATTATGCAGCTGTTTGGGG+TGG | - | chr1_1:70528407-70528426 | Msa0040370:CDS | 45.0% | |
| GACAGTACAGGACTTTCAAC+TGG | + | chr1_1:70528435-70528454 | None:intergenic | 45.0% | |
| GTTGAAAGTCCTGTACTGTC+CGG | - | chr1_1:70528435-70528454 | Msa0040370:CDS | 45.0% | |
| TAACTAACCAGGCTTTCCTC+CGG | + | chr1_1:70528457-70528476 | None:intergenic | 45.0% | |
| GTGGACCTAGACGTTTATCA+TGG | + | chr1_1:70528556-70528575 | None:intergenic | 45.0% | |
| CTAGGTCCACACAAGATTCA+AGG | - | chr1_1:70528566-70528585 | Msa0040370:intron | 45.0% | |
| CCAATCCCTTGAATCTTGTG+TGG | + | chr1_1:70528575-70528594 | None:intergenic | 45.0% | |
| CCACACAAGATTCAAGGGAT+TGG | - | chr1_1:70528572-70528591 | Msa0040370:intron | 45.0% | |
| ! | AAGATTCAAGGGATTGGTGC+TGG | - | chr1_1:70528578-70528597 | Msa0040370:intron | 45.0% |
| !!! | ATTGGTGCTGGTTTTGTTCC+TGG | - | chr1_1:70528590-70528609 | Msa0040370:intron | 45.0% |
| !!! | TTGGTGCTGGTTTTGTTCCT+GGG | - | chr1_1:70528591-70528610 | Msa0040370:intron | 45.0% |
| !!! | TGGTTTTGTTCCTGGGGTAT+TGG | - | chr1_1:70528598-70528617 | Msa0040370:intron | 45.0% |
| !! | CAGGTTGTTTTCCCTAGCTT+TGG | - | chr1_1:70529431-70529450 | Msa0040370:intron | 45.0% |
| !!! | TTTTCCCTAGCTTTGGTGAG+AGG | - | chr1_1:70529438-70529457 | Msa0040370:intron | 45.0% |
| ! | TGCTGTTTGAATCGGTGAGA+CGG | - | chr1_1:70529474-70529493 | Msa0040370:intron | 45.0% |
| TTCAGATTTCGGCCTTCAAC+TGG | + | chr1_1:70529533-70529552 | None:intergenic | 45.0% | |
| ! | GGATTTTCATTGGCAAAGCC+AGG | - | chr1_1:70529568-70529587 | Msa0040370:intron | 45.0% |
| GGTAATTCAGAAACGCAACC+TGG | + | chr1_1:70529589-70529608 | None:intergenic | 45.0% | |
| !!! | TATTTTTATCAAAAAATTTA+TGG | + | chr1_1:70529331-70529350 | None:intergenic | 5.0% |
| GTTTCAGCTCACTACACCAC+TGG | + | chr1_1:70526909-70526928 | None:intergenic | 50.0% | |
| GGTGTAGTGAGCTGAAACCA+TGG | - | chr1_1:70526911-70526930 | Msa0040370:intron | 50.0% | |
| ACCATGGCAGTTGAAAGGTC+TGG | - | chr1_1:70526927-70526946 | Msa0040370:intron | 50.0% | |
| TCCAGACCTTTCAACTGCCA+TGG | + | chr1_1:70526931-70526950 | None:intergenic | 50.0% | |
| GATTGCTGATGCAGAGGAGA+AGG | - | chr1_1:70527339-70527358 | Msa0040370:intron | 50.0% | |
| GAGAAGGGACTAATTACGCC+TGG | - | chr1_1:70527355-70527374 | Msa0040370:intron | 50.0% | |
| TAACAAGTACCAACCTGGCC+AGG | + | chr1_1:70527376-70527395 | None:intergenic | 50.0% | |
| GAGCCAACAAGTGGCAATAC+GGG | - | chr1_1:70527810-70527829 | Msa0040370:intron | 50.0% | |
| ! | ATGCCCGTATTGCCACTTGT+TGG | + | chr1_1:70527816-70527835 | None:intergenic | 50.0% |
| ACAAGTGGCAATACGGGCAT+CGG | - | chr1_1:70527816-70527835 | Msa0040370:intron | 50.0% | |
| ! | GGTTCTGACAGATCCTGCAA+AGG | - | chr1_1:70527944-70527963 | Msa0040370:intron | 50.0% |
| CCTGTGCCTTTCCATATCTC+TGG | + | chr1_1:70528175-70528194 | None:intergenic | 50.0% | |
| ! | CCAGAGATATGGAAAGGCAC+AGG | - | chr1_1:70528172-70528191 | Msa0040370:intron | 50.0% |
| ! | GAGATATGGAAAGGCACAGG+AGG | - | chr1_1:70528175-70528194 | Msa0040370:intron | 50.0% |
| !! | GGTACTGGTGGTACCATAAC+AGG | - | chr1_1:70528226-70528245 | Msa0040370:intron | 50.0% |
| GGTGGTACCATAACAGGTGT+TGG | - | chr1_1:70528232-70528251 | Msa0040370:intron | 50.0% | |
| !!! | TGGTGCTGGTTTTGTTCCTG+GGG | - | chr1_1:70528592-70528611 | Msa0040370:intron | 50.0% |
| AGACTAACGTCCAATACCCC+AGG | + | chr1_1:70528611-70528630 | None:intergenic | 50.0% | |
| GGTACCTCTCACCAAAGCTA+GGG | + | chr1_1:70529445-70529464 | None:intergenic | 50.0% | |
| AGGTACCTCTCACCAAAGCT+AGG | + | chr1_1:70529446-70529465 | None:intergenic | 50.0% | |
| GCTGTTTGAATCGGTGAGAC+GGG | - | chr1_1:70529475-70529494 | Msa0040370:intron | 50.0% | |
| CGGCCTTCAACTGGAATTCA+TGG | + | chr1_1:70529524-70529543 | None:intergenic | 50.0% | |
| ! | TGCTCGAGTTGCTGCCAAAC+TGG | - | chr1_1:70527138-70527157 | Msa0040370:intron | 55.0% |
| CTAATTACGCCTGGCCAGGT+TGG | - | chr1_1:70527364-70527383 | Msa0040370:intron | 55.0% | |
| !! | TGGCAATACGGGCATCGGAT+TGG | - | chr1_1:70527821-70527840 | Msa0040370:intron | 55.0% |
| GCCCCTTTCATTCCCTTTGC+AGG | + | chr1_1:70527960-70527979 | None:intergenic | 55.0% | |
| GAAAGTCCTGTACTGTCCGG+AGG | - | chr1_1:70528438-70528457 | Msa0040370:CDS | 55.0% | |
| GTTTGAATCGGTGAGACGGG+AGG | - | chr1_1:70529478-70529497 | Msa0040370:intron | 55.0% | |
| GGGACTAATTACGCCTGGCC+AGG | - | chr1_1:70527360-70527379 | Msa0040370:intron | 60.0% | |
| !! | GGGCATCGGATTGGCCTTCT+TGG | - | chr1_1:70527830-70527849 | Msa0040370:CDS | 60.0% |
| GCCTTCTTGGCAGCAGCCAA+AGG | - | chr1_1:70527843-70527862 | Msa0040370:CDS | 60.0% | |
| GCCTTTGGCTGCTGCCAAGA+AGG | + | chr1_1:70527847-70527866 | None:intergenic | 60.0% | |
| GGCTTTCCTCCGGACAGTAC+AGG | + | chr1_1:70528447-70528466 | None:intergenic | 60.0% | |
| GTACTGTCCGGAGGAAAGCC+TGG | - | chr1_1:70528447-70528466 | Msa0040370:CDS | 60.0% | |
| AGCTGCTGCAGCAGCTCCAG+AGG | + | chr1_1:70529245-70529264 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70526452 | 70529845 | 70526452 | ID=Msa0040370;Name=Msa0040370 |
| chr1_1 | mRNA | 70526452 | 70529845 | 70526452 | ID=Msa0040370-mRNA-1;Parent=Msa0040370;Name=Msa0040370-mRNA-1;_AED=0.15;_eAED=0.15;_QI=144|1|1|1|0.81|0.66|12|285|325 |
| chr1_1 | exon | 70526452 | 70526573 | 70526452 | ID=Msa0040370-mRNA-1:exon:23258;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70526608 | 70526863 | 70526608 | ID=Msa0040370-mRNA-1:exon:23257;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70526985 | 70527065 | 70526985 | ID=Msa0040370-mRNA-1:exon:23256;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70527181 | 70527240 | 70527181 | ID=Msa0040370-mRNA-1:exon:23255;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70527648 | 70527727 | 70527648 | ID=Msa0040370-mRNA-1:exon:23254;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70527829 | 70527880 | 70527829 | ID=Msa0040370-mRNA-1:exon:23253;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70528009 | 70528146 | 70528009 | ID=Msa0040370-mRNA-1:exon:23252;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70528236 | 70528499 | 70528236 | ID=Msa0040370-mRNA-1:exon:23251;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70528916 | 70528973 | 70528916 | ID=Msa0040370-mRNA-1:exon:23250;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70529103 | 70529212 | 70529103 | ID=Msa0040370-mRNA-1:exon:23249;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70529326 | 70529379 | 70529326 | ID=Msa0040370-mRNA-1:exon:23248;Parent=Msa0040370-mRNA-1 |
| chr1_1 | exon | 70529714 | 70529845 | 70529714 | ID=Msa0040370-mRNA-1:exon:23247;Parent=Msa0040370-mRNA-1 |
| chr1_1 | five_prime_UTR | 70529714 | 70529845 | 70529714 | ID=Msa0040370-mRNA-1:five_prime_utr;Parent=Msa0040370-mRNA-1 |
| chr1_1 | five_prime_UTR | 70529368 | 70529379 | 70529368 | ID=Msa0040370-mRNA-1:five_prime_utr;Parent=Msa0040370-mRNA-1 |
| chr1_1 | CDS | 70529326 | 70529367 | 70529326 | ID=Msa0040370-mRNA-1:cds;Parent=Msa0040370-mRNA-1 |
| chr1_1 | CDS | 70529103 | 70529212 | 70529103 | ID=Msa0040370-mRNA-1:cds;Parent=Msa0040370-mRNA-1 |
| chr1_1 | CDS | 70528916 | 70528973 | 70528916 | ID=Msa0040370-mRNA-1:cds;Parent=Msa0040370-mRNA-1 |
| chr1_1 | CDS | 70528236 | 70528499 | 70528236 | ID=Msa0040370-mRNA-1:cds;Parent=Msa0040370-mRNA-1 |
| chr1_1 | CDS | 70528009 | 70528146 | 70528009 | ID=Msa0040370-mRNA-1:cds;Parent=Msa0040370-mRNA-1 |
| chr1_1 | CDS | 70527829 | 70527880 | 70527829 | ID=Msa0040370-mRNA-1:cds;Parent=Msa0040370-mRNA-1 |
| chr1_1 | CDS | 70527648 | 70527727 | 70527648 | ID=Msa0040370-mRNA-1:cds;Parent=Msa0040370-mRNA-1 |
| chr1_1 | CDS | 70527181 | 70527240 | 70527181 | ID=Msa0040370-mRNA-1:cds;Parent=Msa0040370-mRNA-1 |
| chr1_1 | CDS | 70526985 | 70527065 | 70526985 | ID=Msa0040370-mRNA-1:cds;Parent=Msa0040370-mRNA-1 |
| chr1_1 | CDS | 70526771 | 70526863 | 70526771 | ID=Msa0040370-mRNA-1:cds;Parent=Msa0040370-mRNA-1 |
| chr1_1 | three_prime_UTR | 70526608 | 70526770 | 70526608 | ID=Msa0040370-mRNA-1:three_prime_utr;Parent=Msa0040370-mRNA-1 |
| chr1_1 | three_prime_UTR | 70526452 | 70526573 | 70526452 | ID=Msa0040370-mRNA-1:three_prime_utr;Parent=Msa0040370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
