AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0504310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504310 MtrunA17_Chr3g0104221 99.538 649 3 0 1 649 1 649 0.0 1359
Msa0504310 MtrunA17_Chr3g0104251 96.610 649 21 1 1 649 1 648 0.0 1318
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504310 AT2G29630.3 86.574 648 79 3 2 648 3 643 0.0 1178
Msa0504310 AT2G29630.1 86.574 648 79 3 2 648 3 643 0.0 1178
Msa0504310 AT2G29630.2 86.574 648 79 3 2 648 3 643 0.0 1178
Msa0504310 AT2G29630.4 93.528 479 30 1 170 648 1 478 0.0 948

Find 170 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCCTTGGATTTATATTT+TGG 0.054220 3_4:-48555553 None:intergenic
ATCCAGTCTTTGCGCAATTT+TGG 0.151904 3_4:-48556014 None:intergenic
GTCATACGCTTTGCAGTTAA+AGG 0.178476 3_4:-48556572 None:intergenic
TTCTCAAGTGCTTGATAAAT+AGG 0.251204 3_4:-48556431 None:intergenic
ATCTTCATAGAGCAGAATTT+AGG 0.265833 3_4:-48557869 None:intergenic
TTAGAACTTATGTAAGATTC+TGG 0.313858 3_4:-48558052 None:intergenic
TCTTCATAGAGCAGAATTTA+GGG 0.329053 3_4:-48557868 None:intergenic
GCAAGGCGAGATTCGAATTT+CGG 0.334517 3_4:+48557735 Msa0504310:CDS
GGCAACCCGAGATGTTCTTT+TGG 0.349740 3_4:-48557605 None:intergenic
TTCGAATCTCGCCTTGCTTA+AGG 0.363084 3_4:-48557729 None:intergenic
TGTGTCATTTGCATCATAAA+TGG 0.379836 3_4:-48556747 None:intergenic
AGAATCTTACATAAGTTCTA+AGG 0.380459 3_4:+48558054 Msa0504310:CDS
CAAGCACTTGAGAAAGTTAA+CGG 0.391428 3_4:+48556440 Msa0504310:CDS
TTGCCTCGGTTTGACGTTGT+TGG 0.393144 3_4:+48555089 Msa0504310:CDS
TAACTCCAAGTGCTTCTTGT+TGG 0.399754 3_4:-48556195 None:intergenic
GCCTTCACATCATCTCTGTT+TGG 0.401765 3_4:-48557626 None:intergenic
GATCACATCACCTCTGCTAT+TGG 0.404414 3_4:+48557533 Msa0504310:CDS
AGATCCACTCTCGAGTTTCA+TGG 0.405158 3_4:-48556376 None:intergenic
GACAAGTGAACTCGTCGAAA+TGG 0.410450 3_4:-48555488 None:intergenic
GACGGAAGTGGAAGAAAATC+AGG 0.413711 3_4:-48555251 None:intergenic
GGGGCAATATCGGTTGTTAA+AGG 0.419451 3_4:-48557503 None:intergenic
ACTTCTGACCTCACAAACTC+TGG 0.423397 3_4:-48556146 None:intergenic
ACATCGGTTGTTTGCAAGAA+TGG 0.425864 3_4:+48555026 Msa0504310:CDS
AACATCCGCACGCTCAAGAA+TGG 0.426423 3_4:+48557699 Msa0504310:CDS
TTTCGACGAGTTCACTTGTC+TGG 0.428378 3_4:+48555491 Msa0504310:CDS
TTGAGCGTGCGGATGTTGTT+TGG 0.432416 3_4:-48557693 None:intergenic
TCTTCCACTTCCGTCCTTCG+AGG 0.432465 3_4:+48555259 Msa0504310:CDS
GGAAGAAAATCAGGAGAAGC+AGG 0.436560 3_4:-48555242 None:intergenic
GCAGATAAGACCAGCTTCTC+AGG 0.436914 3_4:+48553787 Msa0504310:five_prime_UTR
TTGTTCAGCTTGTTCAATCA+AGG 0.440806 3_4:-48556501 None:intergenic
TGGAAGGACATGGCTGTCAT+TGG 0.442271 3_4:-48557788 None:intergenic
GAGAGAGAGACCTGAGAAGC+TGG 0.442588 3_4:-48553797 None:intergenic
TCCATGCTGGAGTACTTCTT+AGG 0.443669 3_4:+48556543 Msa0504310:CDS
GCTATTGGTGCTGCAAATAT+CGG 0.445488 3_4:+48557548 Msa0504310:CDS
AGGAAGTTTACAAGGTTCAA+TGG 0.445895 3_4:+48556300 Msa0504310:CDS
TCCCAAAATTGCGCAAAGAC+TGG 0.449046 3_4:+48556012 Msa0504310:CDS
AGAATTTCGCTTATGAGCAC+TGG 0.450600 3_4:+48556654 Msa0504310:CDS
TCAGATGTACTATGCTAAGC+AGG 0.450997 3_4:+48556073 Msa0504310:CDS
CATGTTTCTCAGCATACTTT+CGG 0.451161 3_4:-48557904 None:intergenic
CGCAACTCTGCTGTACCAGT+TGG 0.457424 3_4:+48556401 Msa0504310:CDS
AGCTCCATCTTCCATGGCTC+TGG 0.460568 3_4:+48555142 Msa0504310:CDS
TTGTCTGCATTAGTTGTTGG+AGG 0.466271 3_4:-48555191 None:intergenic
TCTTATCTGCAGAAATGAAA+TGG 0.469993 3_4:-48553774 None:intergenic
TTGTGCATTGGAACATGTCC+TGG 0.474332 3_4:-48557416 None:intergenic
GGTACCAGAGCCATGGAAGA+TGG 0.474883 3_4:-48555146 None:intergenic
TTGGACGCACTTCAAATGCT+TGG 0.476041 3_4:+48555108 Msa0504310:CDS
TGCGCAAAGACTGGATTGAT+AGG 0.476088 3_4:+48556021 Msa0504310:CDS
GAAGCACCTTTCTACACTCT+TGG 0.477648 3_4:+48557479 Msa0504310:CDS
GGAAGTTTACAAGGTTCAAT+GGG 0.485099 3_4:+48556301 Msa0504310:CDS
ATCGTAACCAGGGGCAATAT+CGG 0.485888 3_4:-48557513 None:intergenic
GATCCAACGACAAAGCAAAC+TGG 0.486966 3_4:-48557766 None:intergenic
GGACCAGTTTGCTTTGTCGT+TGG 0.492655 3_4:+48557763 Msa0504310:CDS
CACTCGTAGAGCATGGGAAA+AGG 0.493579 3_4:+48556805 Msa0504310:CDS
CGAAAGTATGCTGAGAAACA+TGG 0.494520 3_4:+48557905 Msa0504310:CDS
TAGTACATCTGAGTGAATCT+TGG 0.499210 3_4:-48556062 None:intergenic
TTTGTAGTTCTGCGTCGAGA+TGG 0.500161 3_4:+48554983 Msa0504310:intron
GTCAAAGTAAATGCAAACAT+TGG 0.502683 3_4:+48556248 Msa0504310:CDS
TCCAAGTGCTTCTTGTTGGA+AGG 0.503675 3_4:-48556191 None:intergenic
ACATCCGCACGCTCAAGAAT+GGG 0.504335 3_4:+48557700 Msa0504310:CDS
AGCATGGGAAAAGGATGTAC+AGG 0.504706 3_4:+48556814 Msa0504310:CDS
AACAGAGATGATGTGAAGGC+TGG 0.505621 3_4:+48557629 Msa0504310:CDS
TATGCTGAGAAACATGGGTA+TGG 0.505869 3_4:+48557911 Msa0504310:CDS
TGTTGAGGAAGCTTTGAAGC+AGG 0.506554 3_4:+48557940 Msa0504310:CDS
CCCTTCCAACAAGAAGCACT+TGG 0.511786 3_4:+48556190 Msa0504310:CDS
CACTCCTCGAAGGACGGAAG+TGG 0.511930 3_4:-48555263 None:intergenic
TTAACTGCAAAGCGTATGAC+TGG 0.513287 3_4:+48556575 Msa0504310:CDS
AGTTTCATGGATGTGGCGAC+CGG 0.515738 3_4:-48556363 None:intergenic
ATAAGTTCTAAGGAGGGGTA+AGG 0.516439 3_4:+48558064 Msa0504310:CDS
GATTACTTCACCATCCATGC+TGG 0.518074 3_4:+48556530 Msa0504310:CDS
CACTTCAAATGCTTGGAAGA+AGG 0.518810 3_4:+48555115 Msa0504310:CDS
ACAGTCATGGATCTCTCAAC+CGG 0.519986 3_4:+48556344 Msa0504310:CDS
GCAACTCTGCTGTACCAGTT+GGG 0.524405 3_4:+48556402 Msa0504310:CDS
AGGTTCAATGGGCAACTATG+TGG 0.524862 3_4:+48556312 Msa0504310:CDS
ATGCTGAGAAACATGGGTAT+GGG 0.525160 3_4:+48557912 Msa0504310:CDS
TAAATAGGCACAGTCCCAAC+TGG 0.528616 3_4:-48556416 None:intergenic
GAGGTGATGTGATCGTAACC+AGG 0.529839 3_4:-48557524 None:intergenic
TTCTCCTTGTGTCAAAAGCT+CGG 0.530462 3_4:-48556780 None:intergenic
CCAAGTGCTTCTTGTTGGAA+GGG 0.531742 3_4:-48556190 None:intergenic
TCGAATGTCAATGTGGCTCT+AGG 0.534491 3_4:-48555167 None:intergenic
GGTTCAATGGGCAACTATGT+GGG 0.535263 3_4:+48556313 Msa0504310:CDS
TTAACAACCGATATTGCCCC+TGG 0.536665 3_4:+48557506 Msa0504310:CDS
GAGATTCGAATTTCGGTGGA+TGG 0.537436 3_4:+48557742 Msa0504310:CDS
GAATTGCAGAAGATCTTACC+TGG 0.537643 3_4:+48556462 Msa0504310:CDS
TATAGAAGAGGAAGTTTACA+AGG 0.538528 3_4:+48556292 Msa0504310:CDS
CCGTTCACTCTCTCAATCAC+TGG 0.539805 3_4:+48553751 Msa0504310:five_prime_UTR
CAAAGAGCACAAAAGAATCC+AGG 0.542624 3_4:+48555291 Msa0504310:CDS
TGACTCCAAAAGAACATCTC+GGG 0.547374 3_4:+48557600 Msa0504310:CDS
GTGACTCCAAAAGAACATCT+CGG 0.553820 3_4:+48557599 Msa0504310:CDS
TTTGCATCATAAATGGATCC+AGG 0.553908 3_4:-48556740 None:intergenic
TGGGTATGGGGAGGATGTTG+AGG 0.553974 3_4:+48557925 Msa0504310:CDS
GAGAACTCACTCGTAGAGCA+TGG 0.554254 3_4:+48556798 Msa0504310:CDS
AAGAAGTACTCCAGCATGGA+TGG 0.555272 3_4:-48556540 None:intergenic
GATGAAACATTGCCGTCAGA+AGG 0.559015 3_4:+48557812 Msa0504310:CDS
ATTGGTGATGGTTTAAGACC+TGG 0.559490 3_4:+48556722 Msa0504310:CDS
GGAGAACAACATGGTGAAGC+TGG 0.563050 3_4:+48558013 Msa0504310:CDS
GAGTTAGAGCCTACGATAGT+CGG 0.564536 3_4:+48556212 Msa0504310:CDS
ACTCTCGAGTTTCATGGATG+TGG 0.564591 3_4:-48556370 None:intergenic
CAAAATATAAATCCAAGGAT+AGG 0.566379 3_4:+48555554 Msa0504310:CDS
AGTTGTAAGCTCTATAGAAG+AGG 0.566957 3_4:+48556280 Msa0504310:CDS
TTGAGGAAGCTTTGAAGCAG+GGG 0.567473 3_4:+48557942 Msa0504310:CDS
ACATTACAGGTGATGAATGA+AGG 0.567637 3_4:+48557392 Msa0504310:intron
GGCTCTAGGTACCAGAGCCA+TGG 0.568892 3_4:-48555153 None:intergenic
TGCTGAGAAACATGGGTATG+GGG 0.570958 3_4:+48557913 Msa0504310:CDS
CGGCAATGTTTCATCGTGGA+AGG 0.571228 3_4:-48557804 None:intergenic
TGTTTCATCGTGGAAGGACA+TGG 0.579172 3_4:-48557798 None:intergenic
GTCCCCAAAATATAAATCCA+AGG 0.580202 3_4:+48555549 Msa0504310:CDS
GCCACCTTTGCACCTTCTGA+CGG 0.581477 3_4:-48557824 None:intergenic
GAAGTCATTCATGAAGAAAG+TGG 0.583458 3_4:+48555449 Msa0504310:CDS
GGTATCCCTGAAAACCTCCC+AGG 0.584409 3_4:-48556480 None:intergenic
ATCTTACATAAGTTCTAAGG+AGG 0.585968 3_4:+48558057 Msa0504310:CDS
GTGGCACTATCCATTGGTGA+TGG 0.588590 3_4:+48556710 Msa0504310:CDS
GGAACTAGCTCCATCTTCCA+TGG 0.589016 3_4:+48555136 Msa0504310:CDS
GTTGAGGAAGCTTTGAAGCA+GGG 0.589019 3_4:+48557941 Msa0504310:CDS
GAATTTCGCTTATGAGCACT+GGG 0.590654 3_4:+48556655 Msa0504310:CDS
CTTCTGACCTCACAAACTCT+GGG 0.591661 3_4:-48556145 None:intergenic
AGGTCTTAAACCATCACCAA+TGG 0.593742 3_4:-48556720 None:intergenic
GGAACTTTGATTGAGAAGCA+TGG 0.599287 3_4:-48555052 None:intergenic
AGGCGAGATTCGAATTTCGG+TGG 0.600004 3_4:+48557738 Msa0504310:CDS
GCCGTCAGAAGGTGCAAAGG+TGG 0.600402 3_4:+48557823 Msa0504310:CDS
ATCAGGAGAAGCAGGGTCAA+CGG 0.601985 3_4:-48555234 None:intergenic
GGAAAGCACTCCTCGAAGGA+CGG 0.603615 3_4:-48555269 None:intergenic
GCTGCAAATATCGGTGCACT+TGG 0.603945 3_4:+48557557 Msa0504310:CDS
AGAACTCACTCGTAGAGCAT+GGG 0.608989 3_4:+48556799 Msa0504310:CDS
AAAGGACCAAGAGTGTAGAA+AGG 0.610274 3_4:-48557485 None:intergenic
AGCTCAACCCAGAGTTTGTG+AGG 0.611324 3_4:+48556138 Msa0504310:CDS
CGCGCAATAAAGCATCTCCT+CGG 0.611466 3_4:-48556105 None:intergenic
ACTGGAATAGTTTCGAGAGG+AGG 0.611781 3_4:+48556593 Msa0504310:CDS
GTGGGGAGCTGATACAGTCA+TGG 0.615728 3_4:+48556331 Msa0504310:CDS
TCATCCCATTCTTGAGCGTG+CGG 0.615844 3_4:-48557704 None:intergenic
ACATCCATGAAACTCGAGAG+TGG 0.616555 3_4:+48556372 Msa0504310:CDS
GTGAGGTCAGAAGTTGCTCG+TGG 0.618370 3_4:+48556155 Msa0504310:CDS
CTTTGGAAAGCACTCCTCGA+AGG 0.619893 3_4:-48555273 None:intergenic
GCACATTTCTGCTCGATGTG+TGG 0.624109 3_4:+48557845 Msa0504310:CDS
AAGTTCCTTCCGACTATCGT+AGG 0.624438 3_4:-48556221 None:intergenic
CTTACATAAGTTCTAAGGAG+GGG 0.625172 3_4:+48558059 Msa0504310:CDS
CAGATGTACTATGCTAAGCA+GGG 0.626592 3_4:+48556074 Msa0504310:CDS
GAAAGTATGCTGAGAAACAT+GGG 0.629017 3_4:+48557906 Msa0504310:CDS
ATGGGATGATGCCTTAAGCA+AGG 0.635329 3_4:+48557718 Msa0504310:CDS
TGCAGAAGATCTTACCTGGG+AGG 0.635440 3_4:+48556466 Msa0504310:CDS
ACCTAAGAAGTACTCCAGCA+TGG 0.637215 3_4:-48556544 None:intergenic
CCAGTGATTGAGAGAGTGAA+CGG 0.637626 3_4:-48553751 None:intergenic
GTTCAATGGGCAACTATGTG+GGG 0.639981 3_4:+48556314 Msa0504310:CDS
AGGTGATGTGATCGTAACCA+GGG 0.640270 3_4:-48557523 None:intergenic
TTGATTGAACAAGCTGAACA+AGG 0.640918 3_4:+48556503 Msa0504310:CDS
ATTGCCGTCAGAAGGTGCAA+AGG 0.640952 3_4:+48557820 Msa0504310:CDS
TTCTATAGAGCTTACAACTG+CGG 0.643002 3_4:-48556276 None:intergenic
TATGATGTGGCACTATCCAT+TGG 0.649646 3_4:+48556704 Msa0504310:CDS
GCCAAACAGAGATGATGTGA+AGG 0.651430 3_4:+48557625 Msa0504310:CDS
GAAGAAAATCAGGAGAAGCA+GGG 0.652132 3_4:-48555241 None:intergenic
GCTGCGAAGAAAACGATCAG+TGG 0.655933 3_4:+48557992 Msa0504310:CDS
TCTTACATAAGTTCTAAGGA+GGG 0.656559 3_4:+48558058 Msa0504310:CDS
GAGGATCGATTCATGCAAAG+TGG 0.658351 3_4:+48556612 Msa0504310:CDS
GAACAACATGGTGAAGCTGG+TGG 0.662902 3_4:+48558016 Msa0504310:CDS
GTTCTGCGTCGAGATGGCGT+CGG 0.670521 3_4:+48554989 Msa0504310:intron
ATTTGCAGCACCAATAGCAG+AGG 0.676582 3_4:-48557543 None:intergenic
CTGCTCTATGAAGATAACTG+AGG 0.678362 3_4:+48557877 Msa0504310:CDS
CAGGTGATGAATGAAGGACC+AGG 0.679678 3_4:+48557398 Msa0504310:intron
TAGAGCCTACGATAGTCGGA+AGG 0.685636 3_4:+48556216 Msa0504310:CDS
ATGACTGGAATAGTTTCGAG+AGG 0.691380 3_4:+48556590 Msa0504310:CDS
CGTCCAACAACGTCAAACCG+AGG 0.694328 3_4:-48555092 None:intergenic
AATTGCAGAAGATCTTACCT+GGG 0.696780 3_4:+48556463 Msa0504310:CDS
TTTGATAACTATGACACCAG+TGG 0.702964 3_4:+48555527 Msa0504310:CDS
ACGATCAGTGGAGAACAACA+TGG 0.703526 3_4:+48558004 Msa0504310:CDS
GGTGCATGCTAATGTGACAT+CGG 0.705767 3_4:+48555010 Msa0504310:CDS
CTGACGGCAATGTTTCATCG+TGG 0.708024 3_4:-48557808 None:intergenic
TGAGAAACATGGGTATGGGG+AGG 0.712571 3_4:+48557916 Msa0504310:CDS
GGTGATGTGATCGTAACCAG+GGG 0.734207 3_4:-48557522 None:intergenic
CATCTGCAATCAGTATGATG+TGG 0.739970 3_4:+48556691 Msa0504310:CDS
TGGAGGATCGAATGTCAATG+TGG 0.751684 3_4:-48555174 None:intergenic
TAAGCAGGGAATCATTACCG+AGG 0.754822 3_4:+48556088 Msa0504310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATCTTTTTTGTAAAA+GGG + chr3_4:48554451-48554470 Msa0504310:intron 10.0%
!!! AAAGTTTGATAATATATATA+AGG - chr3_4:48556840-48556859 None:intergenic 10.0%
!! AAACAAAAAAAAAAACAAAC+AGG - chr3_4:48553886-48553905 None:intergenic 15.0%
!!! TTTTTTTATAACCTTATTCT+TGG + chr3_4:48553936-48553955 Msa0504310:intron 15.0%
!!! TTTTTAAAAAAAAAATGAGG+AGG + chr3_4:48554383-48554402 Msa0504310:intron 15.0%
!!! CATAATATCTTTTTTGTAAA+AGG + chr3_4:48554450-48554469 Msa0504310:intron 15.0%
!!! TAATATCTTTTTTGTAAAAG+GGG + chr3_4:48554452-48554471 Msa0504310:intron 15.0%
!! ACATGATGATATATTAATTA+CGG - chr3_4:48555422-48555441 None:intergenic 15.0%
!! GAAAATTGAATTAATTTAGT+TGG + chr3_4:48555962-48555981 Msa0504310:intron 15.0%
!!! TTCTTATCATATTTGTTATA+TGG + chr3_4:48556945-48556964 Msa0504310:intron 15.0%
!!! TTAAGTTGTTTATTTAAACA+GGG - chr3_4:48557171-48557190 None:intergenic 15.0%
!!! ATTAAGTTGTTTATTTAAAC+AGG - chr3_4:48557172-48557191 None:intergenic 15.0%
!! TTTATATACAAGAACTTATA+TGG - chr3_4:48557209-48557228 None:intergenic 15.0%
!! ACGAAAAATCTAAATCTAAT+TGG + chr3_4:48554241-48554260 Msa0504310:intron 20.0%
!! GAGATAAATCTAAATCTAAT+TGG + chr3_4:48554279-48554298 Msa0504310:intron 20.0%
!!! TGGTTTGTTTACAATAATTT+TGG + chr3_4:48554299-48554318 Msa0504310:intron 20.0%
!! AGTTTGTACATATAACAAAA+TGG - chr3_4:48554684-48554703 None:intergenic 20.0%
!! TTTCATCATATGTATTCAAT+TGG - chr3_4:48554778-48554797 None:intergenic 20.0%
!! ATATCAAATGTTTAAACAAC+TGG - chr3_4:48554951-48554970 None:intergenic 20.0%
!!! ACATACTTTTCAATATTAAC+AGG + chr3_4:48555335-48555354 Msa0504310:intron 20.0%
!!! TATCCTTGGATTTATATTTT+GGG - chr3_4:48555555-48555574 None:intergenic 20.0%
!! GTTAATAGAAATTAAGAGTT+TGG - chr3_4:48555737-48555756 None:intergenic 20.0%
!!! ATGATATATGAGTCTTATAT+TGG + chr3_4:48555909-48555928 Msa0504310:intron 20.0%
!! AAGTAAACAAAAAGAAATCA+TGG - chr3_4:48557366-48557385 None:intergenic 20.0%
!! TGTAGTTTTTGTCAAAACTA+TGG + chr3_4:48554170-48554189 Msa0504310:intron 25.0%
!!! TTGGTGTTGTAAATTTTTGT+AGG + chr3_4:48554318-48554337 Msa0504310:intron 25.0%
!! AATTTGTGTCTGGATATTTT+TGG + chr3_4:48554561-48554580 Msa0504310:intron 25.0%
!! ATTTGTGTCTGGATATTTTT+GGG + chr3_4:48554562-48554581 Msa0504310:intron 25.0%
! AAAAGTGAGAATCATTCTTA+GGG + chr3_4:48554795-48554814 Msa0504310:intron 25.0%
! TAATGAAAACAAAGTATACC+TGG - chr3_4:48555312-48555331 None:intergenic 25.0%
! TAATATATCATCATGTTTCC+AGG + chr3_4:48555426-48555445 Msa0504310:intron 25.0%
! AATATATCATCATGTTTCCA+GGG + chr3_4:48555427-48555446 Msa0504310:intron 25.0%
!! ATCCTTGGATTTATATTTTG+GGG - chr3_4:48555554-48555573 None:intergenic 25.0%
!! CTATCCTTGGATTTATATTT+TGG - chr3_4:48555556-48555575 None:intergenic 25.0%
! CAAAATATAAATCCAAGGAT+AGG + chr3_4:48555554-48555573 Msa0504310:CDS 25.0%
! AAGATATAAAGAAAATGCCA+TGG - chr3_4:48555605-48555624 None:intergenic 25.0%
! TAAAAATGAAAATGCTCAGT+TGG - chr3_4:48555836-48555855 None:intergenic 25.0%
! TCGTTTCATGTATTTCAATT+AGG + chr3_4:48555987-48556006 Msa0504310:intron 25.0%
! CGTTTCATGTATTTCAATTA+GGG + chr3_4:48555988-48556007 Msa0504310:intron 25.0%
! ATTGATAGGAGAGAAAAAAT+CGG + chr3_4:48556035-48556054 Msa0504310:CDS 25.0%
! GATAAGAATGAAAAGAAATG+CGG - chr3_4:48556933-48556952 None:intergenic 25.0%
!! TATGGTGATCTTATCTATTT+TGG + chr3_4:48556963-48556982 Msa0504310:intron 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr3_4:48557032-48557051 None:intergenic 25.0%
! GATGATAGTCGAAATATATT+AGG - chr3_4:48557305-48557324 None:intergenic 25.0%
! TTAGAACTTATGTAAGATTC+TGG - chr3_4:48558055-48558074 None:intergenic 25.0%
! AGAATCTTACATAAGTTCTA+AGG + chr3_4:48558054-48558073 Msa0504310:CDS 25.0%
TCTTATCTGCAGAAATGAAA+TGG - chr3_4:48553777-48553796 None:intergenic 30.0%
GCAATCAAAAACCAAGAATA+AGG - chr3_4:48553950-48553969 None:intergenic 30.0%
!!! ATTTTAGAGCAGTGAGATTA+GGG + chr3_4:48553970-48553989 Msa0504310:intron 30.0%
TAATTATAAGCGTGCATGTT+TGG + chr3_4:48554097-48554116 Msa0504310:intron 30.0%
GTAGTGCATGTTTGAATTAA+CGG - chr3_4:48554223-48554242 None:intergenic 30.0%
AAAAAAAATGACCCCTTAAG+TGG - chr3_4:48554349-48554368 None:intergenic 30.0%
TAACAAAATGGAAGCAAGAT+AGG - chr3_4:48554672-48554691 None:intergenic 30.0%
GAAAAGTGAGAATCATTCTT+AGG + chr3_4:48554794-48554813 Msa0504310:intron 30.0%
AAAGTGAGAATCATTCTTAG+GGG + chr3_4:48554796-48554815 Msa0504310:intron 30.0%
!! ATAGCAAGTTTGCTAACAAA+AGG - chr3_4:48555392-48555411 None:intergenic 30.0%
! ATGATTTTCATACCTATCCT+TGG - chr3_4:48555569-48555588 None:intergenic 30.0%
!!! TCATGTTTTTATTTTCGCCA+TGG + chr3_4:48555585-48555604 Msa0504310:intron 30.0%
TTCTTTATATCTTGAGTCTG+TGG + chr3_4:48555612-48555631 Msa0504310:intron 30.0%
! GTTTTTGTGTGAAGAATGTT+AGG + chr3_4:48555638-48555657 Msa0504310:intron 30.0%
! CTTCAAGTTTGATTCAACAA+TGG - chr3_4:48555759-48555778 None:intergenic 30.0%
! AAACTTGAAGCATCATACTT+CGG + chr3_4:48555769-48555788 Msa0504310:intron 30.0%
TTACTACATGCTATTCTATG+CGG - chr3_4:48555888-48555907 None:intergenic 30.0%
GTCAAAGTAAATGCAAACAT+TGG + chr3_4:48556248-48556267 Msa0504310:CDS 30.0%
TATAGAAGAGGAAGTTTACA+AGG + chr3_4:48556292-48556311 Msa0504310:CDS 30.0%
TTCTCAAGTGCTTGATAAAT+AGG - chr3_4:48556434-48556453 None:intergenic 30.0%
!! TGTGTCATTTGCATCATAAA+TGG - chr3_4:48556750-48556769 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG + chr3_4:48557063-48557082 Msa0504310:intron 30.0%
AACTACCGTAAATACATTTC+TGG + chr3_4:48557337-48557356 Msa0504310:intron 30.0%
TTTACTTTGAGCTACATTAC+AGG + chr3_4:48557379-48557398 Msa0504310:intron 30.0%
!! TTTTCAGGAATTTTGTGCAT+TGG - chr3_4:48557431-48557450 None:intergenic 30.0%
TCTTCATAGAGCAGAATTTA+GGG - chr3_4:48557871-48557890 None:intergenic 30.0%
ATCTTCATAGAGCAGAATTT+AGG - chr3_4:48557872-48557891 None:intergenic 30.0%
!! ATCTTACATAAGTTCTAAGG+AGG + chr3_4:48558057-48558076 Msa0504310:CDS 30.0%
!! TCTTACATAAGTTCTAAGGA+GGG + chr3_4:48558058-48558077 Msa0504310:CDS 30.0%
!!! CATTTTAGAGCAGTGAGATT+AGG + chr3_4:48553969-48553988 Msa0504310:intron 35.0%
TGCATGTTTGAATTAACGGT+GGG - chr3_4:48554219-48554238 None:intergenic 35.0%
TTTGTAGGTGATTCCACTTA+AGG + chr3_4:48554333-48554352 Msa0504310:intron 35.0%
TTGTAGGTGATTCCACTTAA+GGG + chr3_4:48554334-48554353 Msa0504310:intron 35.0%
ATAACTCTTGCATCACAGTA+TGG + chr3_4:48554414-48554433 Msa0504310:intron 35.0%
!!! TCTTTTTTGTAAAAGGGGCA+TGG + chr3_4:48554457-48554476 Msa0504310:intron 35.0%
ATCCAGACACAAATTCACAA+GGG - chr3_4:48554556-48554575 None:intergenic 35.0%
TATCCAGACACAAATTCACA+AGG - chr3_4:48554557-48554576 None:intergenic 35.0%
TTCTGTCGTGTCAAAAAGAT+CGG + chr3_4:48554612-48554631 Msa0504310:intron 35.0%
!! CATTCTTAGGGGTTTTGATA+TGG + chr3_4:48554807-48554826 Msa0504310:intron 35.0%
GAGGCAAAAATGTAGAATTC+GGG - chr3_4:48555076-48555095 None:intergenic 35.0%
CGAGGCAAAAATGTAGAATT+CGG - chr3_4:48555077-48555096 None:intergenic 35.0%
! CGAATTCTACATTTTTGCCT+CGG + chr3_4:48555075-48555094 Msa0504310:CDS 35.0%
! GTTTTGTCTGCATTAGTTGT+TGG - chr3_4:48555197-48555216 None:intergenic 35.0%
GAAGTCATTCATGAAGAAAG+TGG + chr3_4:48555449-48555468 Msa0504310:CDS 35.0%
! TTTGATAACTATGACACCAG+TGG + chr3_4:48555527-48555546 Msa0504310:CDS 35.0%
!! ATTTATATTTTGGGGACCAC+TGG - chr3_4:48555546-48555565 None:intergenic 35.0%
GTCCCCAAAATATAAATCCA+AGG + chr3_4:48555549-48555568 Msa0504310:CDS 35.0%
TGAAGAATGTTAGGCTAGTA+AGG + chr3_4:48555647-48555666 Msa0504310:intron 35.0%
ATTGAAGAAACTCAGAGACA+AGG - chr3_4:48555683-48555702 None:intergenic 35.0%
AAAATGCTCAGTTGGCTAAT+TGG - chr3_4:48555828-48555847 None:intergenic 35.0%
TAGTACATCTGAGTGAATCT+TGG - chr3_4:48556065-48556084 None:intergenic 35.0%
TTCTATAGAGCTTACAACTG+CGG - chr3_4:48556279-48556298 None:intergenic 35.0%
AGTTGTAAGCTCTATAGAAG+AGG + chr3_4:48556280-48556299 Msa0504310:CDS 35.0%
AGGAAGTTTACAAGGTTCAA+TGG + chr3_4:48556300-48556319 Msa0504310:CDS 35.0%
GGAAGTTTACAAGGTTCAAT+GGG + chr3_4:48556301-48556320 Msa0504310:CDS 35.0%
CAAGCACTTGAGAAAGTTAA+CGG + chr3_4:48556440-48556459 Msa0504310:CDS 35.0%
AATTGCAGAAGATCTTACCT+GGG + chr3_4:48556463-48556482 Msa0504310:CDS 35.0%
! TTGTTCAGCTTGTTCAATCA+AGG - chr3_4:48556504-48556523 None:intergenic 35.0%
TTGATTGAACAAGCTGAACA+AGG + chr3_4:48556503-48556522 Msa0504310:CDS 35.0%
TTTGCATCATAAATGGATCC+AGG - chr3_4:48556743-48556762 None:intergenic 35.0%
GGTCTCCAGAAATGTATTTA+CGG - chr3_4:48557345-48557364 None:intergenic 35.0%
ACATTACAGGTGATGAATGA+AGG + chr3_4:48557392-48557411 Msa0504310:intron 35.0%
!!! AGCTGTTTTTGCATGTTTTC+AGG - chr3_4:48557446-48557465 None:intergenic 35.0%
ACATGCAAAAACAGCTAGAA+TGG + chr3_4:48557450-48557469 Msa0504310:CDS 35.0%
CATGTTTCTCAGCATACTTT+CGG - chr3_4:48557907-48557926 None:intergenic 35.0%
! GAAAGTATGCTGAGAAACAT+GGG + chr3_4:48557906-48557925 Msa0504310:CDS 35.0%
!! CTTACATAAGTTCTAAGGAG+GGG + chr3_4:48558059-48558078 Msa0504310:CDS 35.0%
GTGCATGTTTGAATTAACGG+TGG - chr3_4:48554220-48554239 None:intergenic 40.0%
TGTAGGTGATTCCACTTAAG+GGG + chr3_4:48554335-48554354 Msa0504310:intron 40.0%
!!! GTTCTGCTTTTCTGAGATGA+AGG + chr3_4:48554513-48554532 Msa0504310:intron 40.0%
TCCAGACACAAATTCACAAG+GGG - chr3_4:48554555-48554574 None:intergenic 40.0%
TCTGTCGTGTCAAAAAGATC+GGG + chr3_4:48554613-48554632 Msa0504310:intron 40.0%
GGGATATTGACAATGATGTG+TGG + chr3_4:48554633-48554652 Msa0504310:intron 40.0%
AACTATACCTACACTTCAGC+TGG + chr3_4:48554700-48554719 Msa0504310:intron 40.0%
! ACATCGGTTGTTTGCAAGAA+TGG + chr3_4:48555026-48555045 Msa0504310:CDS 40.0%
GGAACTTTGATTGAGAAGCA+TGG - chr3_4:48555055-48555074 None:intergenic 40.0%
CACTTCAAATGCTTGGAAGA+AGG + chr3_4:48555115-48555134 Msa0504310:CDS 40.0%
TTGTCTGCATTAGTTGTTGG+AGG - chr3_4:48555194-48555213 None:intergenic 40.0%
! AACGGTGTGCTTCTTTTGTT+TGG - chr3_4:48555219-48555238 None:intergenic 40.0%
GAAGAAAATCAGGAGAAGCA+GGG - chr3_4:48555244-48555263 None:intergenic 40.0%
! CTGGATTCTTTTGTGCTCTT+TGG - chr3_4:48555293-48555312 None:intergenic 40.0%
! CAAAGAGCACAAAAGAATCC+AGG + chr3_4:48555291-48555310 Msa0504310:CDS 40.0%
TTCTTCATGAATGACTTCCC+TGG - chr3_4:48555447-48555466 None:intergenic 40.0%
AATGTTAGGCTAGTAAGGAC+AGG + chr3_4:48555652-48555671 Msa0504310:intron 40.0%
TCTATGCGGAAAAACAAGTG+TGG - chr3_4:48555874-48555893 None:intergenic 40.0%
! TCCAGTCTTTGCGCAATTTT+GGG - chr3_4:48556016-48556035 None:intergenic 40.0%
! ATCCAGTCTTTGCGCAATTT+TGG - chr3_4:48556017-48556036 None:intergenic 40.0%
TCAGATGTACTATGCTAAGC+AGG + chr3_4:48556073-48556092 Msa0504310:CDS 40.0%
CAGATGTACTATGCTAAGCA+GGG + chr3_4:48556074-48556093 Msa0504310:CDS 40.0%
TAACTCCAAGTGCTTCTTGT+TGG - chr3_4:48556198-48556217 None:intergenic 40.0%
! GATAGTCGGAAGGAACTTTT+TGG + chr3_4:48556226-48556245 Msa0504310:CDS 40.0%
GAATTGCAGAAGATCTTACC+TGG + chr3_4:48556462-48556481 Msa0504310:CDS 40.0%
GTCATACGCTTTGCAGTTAA+AGG - chr3_4:48556575-48556594 None:intergenic 40.0%
TTAACTGCAAAGCGTATGAC+TGG + chr3_4:48556575-48556594 Msa0504310:CDS 40.0%
ATGACTGGAATAGTTTCGAG+AGG + chr3_4:48556590-48556609 Msa0504310:CDS 40.0%
AGAATTTCGCTTATGAGCAC+TGG + chr3_4:48556654-48556673 Msa0504310:CDS 40.0%
GAATTTCGCTTATGAGCACT+GGG + chr3_4:48556655-48556674 Msa0504310:CDS 40.0%
CATCTGCAATCAGTATGATG+TGG + chr3_4:48556691-48556710 Msa0504310:CDS 40.0%
TATGATGTGGCACTATCCAT+TGG + chr3_4:48556704-48556723 Msa0504310:CDS 40.0%
AGGTCTTAAACCATCACCAA+TGG - chr3_4:48556723-48556742 None:intergenic 40.0%
!! ATTGGTGATGGTTTAAGACC+TGG + chr3_4:48556722-48556741 Msa0504310:CDS 40.0%
TTCTCCTTGTGTCAAAAGCT+CGG - chr3_4:48556783-48556802 None:intergenic 40.0%
!!! CTATTTTGGCCTATGAAGCA+TGG + chr3_4:48556977-48556996 Msa0504310:intron 40.0%
AGGGACAAAACTATGAAGCA+CGG - chr3_4:48557152-48557171 None:intergenic 40.0%
! AAAGGACCAAGAGTGTAGAA+AGG - chr3_4:48557488-48557507 None:intergenic 40.0%
!! GCTATTGGTGCTGCAAATAT+CGG + chr3_4:48557548-48557567 Msa0504310:CDS 40.0%
GTGACTCCAAAAGAACATCT+CGG + chr3_4:48557599-48557618 Msa0504310:CDS 40.0%
TGACTCCAAAAGAACATCTC+GGG + chr3_4:48557600-48557619 Msa0504310:CDS 40.0%
CTGCTCTATGAAGATAACTG+AGG + chr3_4:48557877-48557896 Msa0504310:CDS 40.0%
! CGAAAGTATGCTGAGAAACA+TGG + chr3_4:48557905-48557924 Msa0504310:CDS 40.0%
TATGCTGAGAAACATGGGTA+TGG + chr3_4:48557911-48557930 Msa0504310:CDS 40.0%
ATGCTGAGAAACATGGGTAT+GGG + chr3_4:48557912-48557931 Msa0504310:CDS 40.0%
CCAGTGATTGAGAGAGTGAA+CGG - chr3_4:48553754-48553773 None:intergenic 45.0%
AGGGAGAAATTGAGCTTGCA+TGG + chr3_4:48553989-48554008 Msa0504310:intron 45.0%
AGCGTGCATGTTTGGATTTG+TGG + chr3_4:48554105-48554124 Msa0504310:intron 45.0%
!! GCATCACAGTATGGCTTGTT+TGG + chr3_4:48554423-48554442 Msa0504310:intron 45.0%
ACCCCTTGTGAATTTGTGTC+TGG + chr3_4:48554551-48554570 Msa0504310:intron 45.0%
ATACCTACACTTCAGCTGGA+AGG + chr3_4:48554704-48554723 Msa0504310:intron 45.0%
CAAATGCGTCAGCGTTGTAT+CGG - chr3_4:48554748-48554767 None:intergenic 45.0%
! TTTGTAGTTCTGCGTCGAGA+TGG + chr3_4:48554983-48555002 Msa0504310:intron 45.0%
GGTGCATGCTAATGTGACAT+CGG + chr3_4:48555010-48555029 Msa0504310:CDS 45.0%
TTGGACGCACTTCAAATGCT+TGG + chr3_4:48555108-48555127 Msa0504310:CDS 45.0%
TCGAATGTCAATGTGGCTCT+AGG - chr3_4:48555170-48555189 None:intergenic 45.0%
TGGAGGATCGAATGTCAATG+TGG - chr3_4:48555177-48555196 None:intergenic 45.0%
GGAAGAAAATCAGGAGAAGC+AGG - chr3_4:48555245-48555264 None:intergenic 45.0%
GACGGAAGTGGAAGAAAATC+AGG - chr3_4:48555254-48555273 None:intergenic 45.0%
GACAAGTGAACTCGTCGAAA+TGG - chr3_4:48555491-48555510 None:intergenic 45.0%
TTTCGACGAGTTCACTTGTC+TGG + chr3_4:48555491-48555510 Msa0504310:CDS 45.0%
TTTGGTCAATCGAGAACACG+TGG - chr3_4:48555719-48555738 None:intergenic 45.0%
TCCCAAAATTGCGCAAAGAC+TGG + chr3_4:48556012-48556031 Msa0504310:CDS 45.0%
TGCGCAAAGACTGGATTGAT+AGG + chr3_4:48556021-48556040 Msa0504310:CDS 45.0%
TAAGCAGGGAATCATTACCG+AGG + chr3_4:48556088-48556107 Msa0504310:CDS 45.0%
CTTCTGACCTCACAAACTCT+GGG - chr3_4:48556148-48556167 None:intergenic 45.0%
ACTTCTGACCTCACAAACTC+TGG - chr3_4:48556149-48556168 None:intergenic 45.0%
CCAAGTGCTTCTTGTTGGAA+GGG - chr3_4:48556193-48556212 None:intergenic 45.0%
TCCAAGTGCTTCTTGTTGGA+AGG - chr3_4:48556194-48556213 None:intergenic 45.0%
GAGTTAGAGCCTACGATAGT+CGG + chr3_4:48556212-48556231 Msa0504310:CDS 45.0%
AAGTTCCTTCCGACTATCGT+AGG - chr3_4:48556224-48556243 None:intergenic 45.0%
AGGTTCAATGGGCAACTATG+TGG + chr3_4:48556312-48556331 Msa0504310:CDS 45.0%
GGTTCAATGGGCAACTATGT+GGG + chr3_4:48556313-48556332 Msa0504310:CDS 45.0%
GTTCAATGGGCAACTATGTG+GGG + chr3_4:48556314-48556333 Msa0504310:CDS 45.0%
ACAGTCATGGATCTCTCAAC+CGG + chr3_4:48556344-48556363 Msa0504310:CDS 45.0%
ACTCTCGAGTTTCATGGATG+TGG - chr3_4:48556373-48556392 None:intergenic 45.0%
ACATCCATGAAACTCGAGAG+TGG + chr3_4:48556372-48556391 Msa0504310:CDS 45.0%
AGATCCACTCTCGAGTTTCA+TGG - chr3_4:48556379-48556398 None:intergenic 45.0%
TAAATAGGCACAGTCCCAAC+TGG - chr3_4:48556419-48556438 None:intergenic 45.0%
! ATCTTACCTGGGAGGTTTTC+AGG + chr3_4:48556474-48556493 Msa0504310:CDS 45.0%
! TCTTACCTGGGAGGTTTTCA+GGG + chr3_4:48556475-48556494 Msa0504310:CDS 45.0%
GATTACTTCACCATCCATGC+TGG + chr3_4:48556530-48556549 Msa0504310:CDS 45.0%
!! AAGAAGTACTCCAGCATGGA+TGG - chr3_4:48556543-48556562 None:intergenic 45.0%
! TCCATGCTGGAGTACTTCTT+AGG + chr3_4:48556543-48556562 Msa0504310:CDS 45.0%
!! ACCTAAGAAGTACTCCAGCA+TGG - chr3_4:48556547-48556566 None:intergenic 45.0%
ACTGGAATAGTTTCGAGAGG+AGG + chr3_4:48556593-48556612 Msa0504310:CDS 45.0%
! GAGGATCGATTCATGCAAAG+TGG + chr3_4:48556612-48556631 Msa0504310:CDS 45.0%
! TTTGCCGAGCTTTTGACACA+AGG + chr3_4:48556776-48556795 Msa0504310:CDS 45.0%
AGAACTCACTCGTAGAGCAT+GGG + chr3_4:48556799-48556818 Msa0504310:CDS 45.0%
AGCATGGGAAAAGGATGTAC+AGG + chr3_4:48556814-48556833 Msa0504310:CDS 45.0%
TGGCCTATGAAGCATGGATA+CGG + chr3_4:48556983-48557002 Msa0504310:intron 45.0%
TGTCCGTATCCATGCTTCAT+AGG - chr3_4:48556989-48557008 None:intergenic 45.0%
ATGAAGCATGGATACGGACA+CGG + chr3_4:48556989-48557008 Msa0504310:intron 45.0%
!! TACAAGTGTCGGTGTTGTGT+CGG + chr3_4:48557074-48557093 Msa0504310:intron 45.0%
TTGTGCATTGGAACATGTCC+TGG - chr3_4:48557419-48557438 None:intergenic 45.0%
! GAAGCACCTTTCTACACTCT+TGG + chr3_4:48557479-48557498 Msa0504310:CDS 45.0%
! GGGGCAATATCGGTTGTTAA+AGG - chr3_4:48557506-48557525 None:intergenic 45.0%
TTAACAACCGATATTGCCCC+TGG + chr3_4:48557506-48557525 Msa0504310:CDS 45.0%
ATCGTAACCAGGGGCAATAT+CGG - chr3_4:48557516-48557535 None:intergenic 45.0%
AGGTGATGTGATCGTAACCA+GGG - chr3_4:48557526-48557545 None:intergenic 45.0%
GATCACATCACCTCTGCTAT+TGG + chr3_4:48557533-48557552 Msa0504310:CDS 45.0%
ATTTGCAGCACCAATAGCAG+AGG - chr3_4:48557546-48557565 None:intergenic 45.0%
GCCAAACAGAGATGATGTGA+AGG + chr3_4:48557625-48557644 Msa0504310:CDS 45.0%
GCCTTCACATCATCTCTGTT+TGG - chr3_4:48557629-48557648 None:intergenic 45.0%
AACAGAGATGATGTGAAGGC+TGG + chr3_4:48557629-48557648 Msa0504310:CDS 45.0%
ATGGGATGATGCCTTAAGCA+AGG + chr3_4:48557718-48557737 Msa0504310:CDS 45.0%
TTCGAATCTCGCCTTGCTTA+AGG - chr3_4:48557732-48557751 None:intergenic 45.0%
GCAAGGCGAGATTCGAATTT+CGG + chr3_4:48557735-48557754 Msa0504310:CDS 45.0%
GAGATTCGAATTTCGGTGGA+TGG + chr3_4:48557742-48557761 Msa0504310:CDS 45.0%
GATCCAACGACAAAGCAAAC+TGG - chr3_4:48557769-48557788 None:intergenic 45.0%
TGTTTCATCGTGGAAGGACA+TGG - chr3_4:48557801-48557820 None:intergenic 45.0%
GATGAAACATTGCCGTCAGA+AGG + chr3_4:48557812-48557831 Msa0504310:CDS 45.0%
TGCTGAGAAACATGGGTATG+GGG + chr3_4:48557913-48557932 Msa0504310:CDS 45.0%
!! TGTTGAGGAAGCTTTGAAGC+AGG + chr3_4:48557940-48557959 Msa0504310:CDS 45.0%
!! GTTGAGGAAGCTTTGAAGCA+GGG + chr3_4:48557941-48557960 Msa0504310:CDS 45.0%
!! TTGAGGAAGCTTTGAAGCAG+GGG + chr3_4:48557942-48557961 Msa0504310:CDS 45.0%
ACGATCAGTGGAGAACAACA+TGG + chr3_4:48558004-48558023 Msa0504310:CDS 45.0%
!!! AATTTTTTAAAAAAAAAATG+AGG + chr3_4:48554380-48554399 Msa0504310:intron 5.0%
CCGTTCACTCTCTCAATCAC+TGG + chr3_4:48553751-48553770 Msa0504310:five_prime_UTR 50.0%
GCAGATAAGACCAGCTTCTC+AGG + chr3_4:48553787-48553806 Msa0504310:five_prime_UTR 50.0%
ATGCCTTCCAGCTGAAGTGT+AGG - chr3_4:48554710-48554729 None:intergenic 50.0%
CGATACAACGCTGACGCATT+TGG + chr3_4:48554746-48554765 Msa0504310:intron 50.0%
! TTGCCTCGGTTTGACGTTGT+TGG + chr3_4:48555089-48555108 Msa0504310:CDS 50.0%
GGAACTAGCTCCATCTTCCA+TGG + chr3_4:48555136-48555155 Msa0504310:CDS 50.0%
ATCAGGAGAAGCAGGGTCAA+CGG - chr3_4:48555237-48555256 None:intergenic 50.0%
!! CTTTGGAAAGCACTCCTCGA+AGG - chr3_4:48555276-48555295 None:intergenic 50.0%
! CGCGCAATAAAGCATCTCCT+CGG - chr3_4:48556108-48556127 None:intergenic 50.0%
AGCTCAACCCAGAGTTTGTG+AGG + chr3_4:48556138-48556157 Msa0504310:CDS 50.0%
!! CCCTTCCAACAAGAAGCACT+TGG + chr3_4:48556190-48556209 Msa0504310:CDS 50.0%
TAGAGCCTACGATAGTCGGA+AGG + chr3_4:48556216-48556235 Msa0504310:CDS 50.0%
AGTTTCATGGATGTGGCGAC+CGG - chr3_4:48556366-48556385 None:intergenic 50.0%
GCAACTCTGCTGTACCAGTT+GGG + chr3_4:48556402-48556421 Msa0504310:CDS 50.0%
TGCAGAAGATCTTACCTGGG+AGG + chr3_4:48556466-48556485 Msa0504310:CDS 50.0%
GTGGCACTATCCATTGGTGA+TGG + chr3_4:48556710-48556729 Msa0504310:CDS 50.0%
GAGAACTCACTCGTAGAGCA+TGG + chr3_4:48556798-48556817 Msa0504310:CDS 50.0%
CACTCGTAGAGCATGGGAAA+AGG + chr3_4:48556805-48556824 Msa0504310:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG - chr3_4:48557141-48557160 None:intergenic 50.0%
CAGGTGATGAATGAAGGACC+AGG + chr3_4:48557398-48557417 Msa0504310:intron 50.0%
GGTGATGTGATCGTAACCAG+GGG - chr3_4:48557525-48557544 None:intergenic 50.0%
GAGGTGATGTGATCGTAACC+AGG - chr3_4:48557527-48557546 None:intergenic 50.0%
GCTGCAAATATCGGTGCACT+TGG + chr3_4:48557557-48557576 Msa0504310:CDS 50.0%
! GGCAACCCGAGATGTTCTTT+TGG - chr3_4:48557608-48557627 None:intergenic 50.0%
TTGAGCGTGCGGATGTTGTT+TGG - chr3_4:48557696-48557715 None:intergenic 50.0%
AACATCCGCACGCTCAAGAA+TGG + chr3_4:48557699-48557718 Msa0504310:CDS 50.0%
ACATCCGCACGCTCAAGAAT+GGG + chr3_4:48557700-48557719 Msa0504310:CDS 50.0%
TCATCCCATTCTTGAGCGTG+CGG - chr3_4:48557707-48557726 None:intergenic 50.0%
AGGCGAGATTCGAATTTCGG+TGG + chr3_4:48557738-48557757 Msa0504310:CDS 50.0%
! GGACCAGTTTGCTTTGTCGT+TGG + chr3_4:48557763-48557782 Msa0504310:CDS 50.0%
TGGAAGGACATGGCTGTCAT+TGG - chr3_4:48557791-48557810 None:intergenic 50.0%
CGGCAATGTTTCATCGTGGA+AGG - chr3_4:48557807-48557826 None:intergenic 50.0%
CTGACGGCAATGTTTCATCG+TGG - chr3_4:48557811-48557830 None:intergenic 50.0%
! ATTGCCGTCAGAAGGTGCAA+AGG + chr3_4:48557820-48557839 Msa0504310:CDS 50.0%
GCACATTTCTGCTCGATGTG+TGG + chr3_4:48557845-48557864 Msa0504310:CDS 50.0%
TGAGAAACATGGGTATGGGG+AGG + chr3_4:48557916-48557935 Msa0504310:CDS 50.0%
GCTGCGAAGAAAACGATCAG+TGG + chr3_4:48557992-48558011 Msa0504310:CDS 50.0%
GGAGAACAACATGGTGAAGC+TGG + chr3_4:48558013-48558032 Msa0504310:CDS 50.0%
GAACAACATGGTGAAGCTGG+TGG + chr3_4:48558016-48558035 Msa0504310:CDS 50.0%
GAGAGAGAGACCTGAGAAGC+TGG - chr3_4:48553800-48553819 None:intergenic 55.0%
CGTCCAACAACGTCAAACCG+AGG - chr3_4:48555095-48555114 None:intergenic 55.0%
AGCTCCATCTTCCATGGCTC+TGG + chr3_4:48555142-48555161 Msa0504310:CDS 55.0%
GGTACCAGAGCCATGGAAGA+TGG - chr3_4:48555149-48555168 None:intergenic 55.0%
TCTTCCACTTCCGTCCTTCG+AGG + chr3_4:48555259-48555278 Msa0504310:CDS 55.0%
!! GGAAAGCACTCCTCGAAGGA+CGG - chr3_4:48555272-48555291 None:intergenic 55.0%
GTGAGGTCAGAAGTTGCTCG+TGG + chr3_4:48556155-48556174 Msa0504310:CDS 55.0%
GTGGGGAGCTGATACAGTCA+TGG + chr3_4:48556331-48556350 Msa0504310:CDS 55.0%
CGCAACTCTGCTGTACCAGT+TGG + chr3_4:48556401-48556420 Msa0504310:CDS 55.0%
GGTATCCCTGAAAACCTCCC+AGG - chr3_4:48556483-48556502 None:intergenic 55.0%
CATGGATACGGACACGGACA+CGG + chr3_4:48556995-48557014 Msa0504310:intron 55.0%
!! TGTCGGTGTTGTGTCGGTGT+CGG + chr3_4:48557080-48557099 Msa0504310:intron 55.0%
GCCACCTTTGCACCTTCTGA+CGG - chr3_4:48557827-48557846 None:intergenic 55.0%
TGGGTATGGGGAGGATGTTG+AGG + chr3_4:48557925-48557944 Msa0504310:CDS 55.0%
! CGTCAGCGTTGTATCGGCGT+CGG - chr3_4:48554742-48554761 None:intergenic 60.0%
GTTCTGCGTCGAGATGGCGT+CGG + chr3_4:48554989-48555008 Msa0504310:intron 60.0%
!! GGCTCTAGGTACCAGAGCCA+TGG - chr3_4:48555156-48555175 None:intergenic 60.0%
CACTCCTCGAAGGACGGAAG+TGG - chr3_4:48555266-48555285 None:intergenic 60.0%
ACACGTGTCGTGTCCGACAC+CGG + chr3_4:48557103-48557122 Msa0504310:intron 60.0%
GATTAGGCGTGTCCCGGTGT+CGG - chr3_4:48557119-48557138 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG - chr3_4:48557125-48557144 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG - chr3_4:48557135-48557154 None:intergenic 60.0%
! GCCGTCAGAAGGTGCAAAGG+TGG + chr3_4:48557823-48557842 Msa0504310:CDS 60.0%
CACGTGTCGTGTCCGACACC+GGG + chr3_4:48557104-48557123 Msa0504310:intron 65.0%
ACCGGGACACGCCTAATCCG+AGG + chr3_4:48557121-48557140 Msa0504310:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 48553745 48558084 48553745 ID=Msa0504310;Name=Msa0504310
chr3_4 mRNA 48553745 48558084 48553745 ID=Msa0504310-mRNA-1;Parent=Msa0504310;Name=Msa0504310-mRNA-1;_AED=0.26;_eAED=0.26;_QI=76|1|0.8|1|0.75|0.8|5|0|649
chr3_4 exon 48553745 48553808 48553745 ID=Msa0504310-mRNA-1:exon:10445;Parent=Msa0504310-mRNA-1
chr3_4 exon 48554990 48555312 48554990 ID=Msa0504310-mRNA-1:exon:10446;Parent=Msa0504310-mRNA-1
chr3_4 exon 48555448 48555575 48555448 ID=Msa0504310-mRNA-1:exon:10447;Parent=Msa0504310-mRNA-1
chr3_4 exon 48556009 48556835 48556009 ID=Msa0504310-mRNA-1:exon:10448;Parent=Msa0504310-mRNA-1
chr3_4 exon 48557401 48558084 48557401 ID=Msa0504310-mRNA-1:exon:10449;Parent=Msa0504310-mRNA-1
chr3_4 five_prime_UTR 48553745 48553808 48553745 ID=Msa0504310-mRNA-1:five_prime_utr;Parent=Msa0504310-mRNA-1
chr3_4 five_prime_UTR 48554990 48555001 48554990 ID=Msa0504310-mRNA-1:five_prime_utr;Parent=Msa0504310-mRNA-1
chr3_4 CDS 48555002 48555312 48555002 ID=Msa0504310-mRNA-1:cds;Parent=Msa0504310-mRNA-1
chr3_4 CDS 48555448 48555575 48555448 ID=Msa0504310-mRNA-1:cds;Parent=Msa0504310-mRNA-1
chr3_4 CDS 48556009 48556835 48556009 ID=Msa0504310-mRNA-1:cds;Parent=Msa0504310-mRNA-1
chr3_4 CDS 48557401 48558084 48557401 ID=Msa0504310-mRNA-1:cds;Parent=Msa0504310-mRNA-1
Gene Sequence

>Msa0504310

ATGGCGTCGGTGCATGCTAATGTGACATCGGTTGTTTGCAAGAATGGTAACCATGCTTCTCAATCAAAGTTCCCGAATTCTACATTTTTGCCTCGGTTTGACGTTGTTGGACGCACTTCAAATGCTTGGAAGAAGGAACTAGCTCCATCTTCCATGGCTCTGGTACCTAGAGCCACATTGACATTCGATCCTCCAACAACTAATGCAGACAAAACCAAACAAAAGAAGCACACCGTTGACCCTGCTTCTCCTGATTTTCTTCCACTTCCGTCCTTCGAGGAGTGCTTTCCAAAGAGCACAAAAGAATCCAGGGAAGTCATTCATGAAGAAAGTGGTCATGTGCTCAAAGTTCCATTTCGACGAGTTCACTTGTCTGGTGATGAATCACACTTTGATAACTATGACACCAGTGGTCCCCAAAATATAAATCCAAGGATAGGGCTCCCAAAATTGCGCAAAGACTGGATTGATAGGAGAGAAAAAATCGGTGCTCCAAGATTCACTCAGATGTACTATGCTAAGCAGGGAATCATTACCGAGGAGATGCTTTATTGCGCGACTCGTGAGAAGCTCAACCCAGAGTTTGTGAGGTCAGAAGTTGCTCGTGGACGAGCTATCATCCCTTCCAACAAGAAGCACTTGGAGTTAGAGCCTACGATAGTCGGAAGGAACTTTTTGGTCAAAGTAAATGCAAACATTGGAAATTCCGCAGTTGTAAGCTCTATAGAAGAGGAAGTTTACAAGGTTCAATGGGCAACTATGTGGGGAGCTGATACAGTCATGGATCTCTCAACCGGTCGCCACATCCATGAAACTCGAGAGTGGATCTTGCGCAACTCTGCTGTACCAGTTGGGACTGTGCCTATTTATCAAGCACTTGAGAAAGTTAACGGAATTGCAGAAGATCTTACCTGGGAGGTTTTCAGGGATACCTTGATTGAACAAGCTGAACAAGGTGTTGATTACTTCACCATCCATGCTGGAGTACTTCTTAGGTACATTCCTTTAACTGCAAAGCGTATGACTGGAATAGTTTCGAGAGGAGGATCGATTCATGCAAAGTGGTGCTTAGCTTATCACAAAGAGAATTTCGCTTATGAGCACTGGGATGACATACTTGACATCTGCAATCAGTATGATGTGGCACTATCCATTGGTGATGGTTTAAGACCTGGATCCATTTATGATGCAAATGACACAGCTCAGTTTGCCGAGCTTTTGACACAAGGAGAACTCACTCGTAGAGCATGGGAAAAGGATGTACAGGTGATGAATGAAGGACCAGGACATGTTCCAATGCACAAAATTCCTGAAAACATGCAAAAACAGCTAGAATGGTGTAATGAAGCACCTTTCTACACTCTTGGTCCTTTAACAACCGATATTGCCCCTGGTTACGATCACATCACCTCTGCTATTGGTGCTGCAAATATCGGTGCACTTGGTACAGCTCTTCTCTGTTATGTGACTCCAAAAGAACATCTCGGGTTGCCAAACAGAGATGATGTGAAGGCTGGAGTTATAGCTTACAAGATTGCTGCTCATGCTGCTGATTTAGCCAAACAACATCCGCACGCTCAAGAATGGGATGATGCCTTAAGCAAGGCGAGATTCGAATTTCGGTGGATGGACCAGTTTGCTTTGTCGTTGGATCCAATGACAGCCATGTCCTTCCACGATGAAACATTGCCGTCAGAAGGTGCAAAGGTGGCACATTTCTGCTCGATGTGTGGCCCTAAATTCTGCTCTATGAAGATAACTGAGGATGTCCGAAAGTATGCTGAGAAACATGGGTATGGGGAGGATGTTGAGGAAGCTTTGAAGCAGGGGATGAATGCTATGAGTGCAGAATTTCTTGCTGCGAAGAAAACGATCAGTGGAGAACAACATGGTGAAGCTGGTGGAGAGATTTACTTGCCAGAATCTTACATAAGTTCTAAGGAGGGGTAA
Protein sequence

>Msa0504310

MASVHANVTSVVCKNGNHASQSKFPNSTFLPRFDVVGRTSNAWKKELAPSSMALVPRATLTFDPPTTNADKTKQKKHTVDPASPDFLPLPSFEECFPKSTKESREVIHEESGHVLKVPFRRVHLSGDESHFDNYDTSGPQNINPRIGLPKLRKDWIDRREKIGAPRFTQMYYAKQGIITEEMLYCATREKLNPEFVRSEVARGRAIIPSNKKHLELEPTIVGRNFLVKVNANIGNSAVVSSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAEDLTWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKQHPHAQEWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEKHGYGEDVEEALKQGMNAMSAEFLAAKKTISGEQHGEAGGEIYLPESYISSKEG*