AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1203320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203320 MtrunA17_Chr8g0373961 100.000 329 0 0 1 329 1 329 0.0 665
Msa1203320 MtrunA17_Chr5g0403121 89.189 333 28 2 1 329 1 329 0.0 602
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1203320 AT5G66570.1 78.614 332 67 1 1 328 1 332 0.0 531
Msa1203320 AT3G50820.1 77.946 331 70 1 1 328 1 331 0.0 529
Msa1203320 AT4G37230.1 51.462 171 52 6 160 328 1 142 3.36e-39 135

Find 117 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGGTACACTGCAAATTTC+AGG 0.188286 8_1:+57415075 None:intergenic
AATTCAAAGCAAAACATATT+TGG 0.200360 8_1:-57416357 Msa1203320:CDS
CAATCTGTTTCTAAGGCTTT+TGG 0.217504 8_1:-57417971 Msa1203320:CDS
CTATGGTATGAGTAAGATTT+TGG 0.219313 8_1:+57418172 None:intergenic
GATACTCTATGTCAAATTTC+TGG 0.241260 8_1:+57418285 None:intergenic
ATTTGAAGGTTGCAATTATT+TGG 0.244007 8_1:+57418146 None:intergenic
GAGCTTCAGTGGTGAGTATT+TGG 0.248643 8_1:-57415970 Msa1203320:CDS
GTCTACTCAATCTGTTTCTA+AGG 0.272916 8_1:-57417978 Msa1203320:CDS
TCGTCGAATGTCAGCCTCTT+TGG 0.284468 8_1:+57416380 None:intergenic
CAAGAGTGCTGCATCATCTA+AGG 0.288335 8_1:-57415820 Msa1203320:CDS
GCAACTAATTCTAATTGTTT+AGG 0.298113 8_1:-57415213 Msa1203320:three_prime_UTR
TGGACATTGGTTTGCTGTTC+CGG 0.299883 8_1:+57416322 None:intergenic
TTCACTTCAGTCTGACTTCA+AGG 0.303710 8_1:-57417918 Msa1203320:CDS
ATACAGAGGAAGCTCTTTCT+TGG 0.307073 8_1:-57415940 Msa1203320:CDS
TCAGCCATCTGACACTGATT+TGG 0.309761 8_1:-57415727 Msa1203320:CDS
CCCGAGACTGGTGAGGTTAT+TGG 0.312679 8_1:-57415765 Msa1203320:CDS
AAAACAAAGCTTATCATGTT+TGG 0.324273 8_1:+57415268 None:intergenic
GTGTCATGAGTTTGGTGTTT+TGG 0.330079 8_1:+57416171 None:intergenic
CAGCCATCTGACACTGATTT+GGG 0.336640 8_1:-57415726 Msa1203320:CDS
ACCAACACAATGCGGCTAAA+TGG 0.342295 8_1:-57415189 Msa1203320:three_prime_UTR
GTTGAAGCTTCTAAGATTGC+TGG 0.344092 8_1:-57417878 Msa1203320:CDS
ACGTGGCAAGGTTCTTGATT+TGG 0.355378 8_1:+57418257 None:intergenic
GAATGCAAGTGGGGTGTTCT+TGG 0.363741 8_1:+57416193 None:intergenic
TATCATCAAACACAAATCTT+AGG 0.369459 8_1:+57415310 None:intergenic
TGGTTCGAGGCAGAATTTCT+TGG 0.375551 8_1:+57416247 None:intergenic
GTAGATGCACCTCTTCCCTT+TGG 0.378716 8_1:+57415915 None:intergenic
ATGTCAAATTTCTGGTGAAC+TGG 0.378848 8_1:+57418293 None:intergenic
TAGATGCACCTCTTCCCTTT+GGG 0.390483 8_1:+57415916 None:intergenic
TGATGCTACCAATTGTTTGA+TGG 0.398535 8_1:+57416004 None:intergenic
ACCAATAACCTCACCAGTCT+CGG 0.402559 8_1:+57415764 None:intergenic
ATCAAACAATTGGTAGCATC+AGG 0.409058 8_1:-57416002 Msa1203320:CDS
CCAATTGTTTGATGGTGAAA+AGG 0.409655 8_1:+57416012 None:intergenic
AACCAATGTCCAACCATTGA+TGG 0.423797 8_1:-57416311 Msa1203320:CDS
CGAGATTGAAGGACCCTTCG+AGG 0.424168 8_1:-57416129 Msa1203320:CDS
CCCTGAAATTTGCAGTGTAC+CGG 0.424959 8_1:-57415076 Msa1203320:three_prime_UTR
GCTTTAACTGTGAATGAAGT+TGG 0.435876 8_1:+57416227 None:intergenic
TTGCAATTATTTGGTGGCTA+TGG 0.438680 8_1:+57418155 None:intergenic
GCAGTCACAGTTCAGCTTCC+CGG 0.439504 8_1:-57416053 Msa1203320:CDS
CTGTTGCTACGTAACTTAGT+TGG 0.443147 8_1:+57418013 None:intergenic
TCATCTCCTCTTCCTCCAGC+TGG 0.446505 8_1:+57415867 None:intergenic
GGTTAAACGTGTCATGAGTT+TGG 0.447063 8_1:+57416163 None:intergenic
TGCAACTGCATTGTCATAAC+CGG 0.457996 8_1:+57415893 None:intergenic
ATGTTAAAATCCAAGGTGTT+TGG 0.461523 8_1:-57415686 Msa1203320:CDS
GCATTGCCAGCTGGAGGAAG+AGG 0.465452 8_1:-57415873 Msa1203320:CDS
TTTGAAAGTTGTTGAGTCAA+AGG 0.466942 8_1:+57415575 None:intergenic
ATCTCTCATTGGATGGTTCA+AGG 0.473308 8_1:+57418208 None:intergenic
TACTCACCACTGAAGCTCTC+TGG 0.480748 8_1:+57415975 None:intergenic
TGTGTTGGTTGAGAATTTGA+AGG 0.486509 8_1:+57418132 None:intergenic
CTCCATCAATGGTTGGACAT+TGG 0.488395 8_1:+57416309 None:intergenic
TACACACTCGACGAGATTGA+AGG 0.490679 8_1:-57416140 Msa1203320:CDS
AAATGGAGCACTGAGTTACT+AGG 0.493715 8_1:-57415172 Msa1203320:three_prime_UTR
AGATGAAGAAGAACTTGGTA+AGG 0.496438 8_1:-57415850 Msa1203320:CDS
AGAGGAGATGAAGAAGAACT+TGG 0.496772 8_1:-57415855 Msa1203320:CDS
GAATGGCACACGCTCACCAC+CGG 0.497723 8_1:+57416034 None:intergenic
TCCATTTAGCCGCATTGTGT+TGG 0.499715 8_1:+57415188 None:intergenic
TTCTTGGACCCAAAGGGAAG+AGG 0.500046 8_1:-57415924 Msa1203320:CDS
TATTTGGAAGTCAAAGGAAC+CGG 0.507916 8_1:-57416341 Msa1203320:CDS
CCTGAAATTTGCAGTGTACC+GGG 0.509209 8_1:-57415075 Msa1203320:three_prime_UTR
AGCTCTTTCTTGGACCCAAA+GGG 0.512106 8_1:-57415930 Msa1203320:CDS
TTACAAGCAAGTATCTTGCT+AGG 0.513854 8_1:-57415138 Msa1203320:three_prime_UTR
AGACGGATCTGTCAAATTTG+AGG 0.518438 8_1:-57416099 Msa1203320:CDS
CCAATAACCTCACCAGTCTC+GGG 0.520477 8_1:+57415765 None:intergenic
AGGATAAGGTGATCTCTCAT+TGG 0.520930 8_1:+57418197 None:intergenic
GTCAAATTTGAGGAGAAAGA+TGG 0.521510 8_1:-57416089 Msa1203320:CDS
CCGGTACACTGCAAATTTCA+GGG 0.522216 8_1:+57415076 None:intergenic
CCATGGATCCCTTAAAATGC+TGG 0.522300 8_1:-57415349 Msa1203320:three_prime_UTR
TGAAGGTTGCAATTATTTGG+TGG 0.523037 8_1:+57418149 None:intergenic
CCCTTCGAGGTTTCATCAGA+CGG 0.523837 8_1:-57416116 Msa1203320:CDS
TGAGTCTACTCCTCCATCAA+TGG 0.530867 8_1:+57416298 None:intergenic
AAAGAGCTTCCTCTGTATGA+TGG 0.537718 8_1:+57415945 None:intergenic
TTTGGAACACTATGGAGCTA+AGG 0.538420 8_1:-57417948 Msa1203320:CDS
GCATGAGTGTAGCAGCTGCT+TGG 0.540192 8_1:+57418038 None:intergenic
AATGCAGTTGCATTGCCAGC+TGG 0.544104 8_1:-57415882 Msa1203320:CDS
GGGAAGCCAGAGAGCTTCAG+TGG 0.549932 8_1:-57415981 Msa1203320:CDS
CCAAAGGATGTTAAAATCCA+AGG 0.550235 8_1:-57415693 Msa1203320:CDS
AATAGTTAACAGAGGAGCAA+TGG 0.551821 8_1:-57418071 Msa1203320:exon
ACTCAAACTAAGCCCGAGAC+TGG 0.553515 8_1:-57415777 Msa1203320:CDS
CTGTGAATGAAGTTGGTTCG+AGG 0.555004 8_1:+57416234 None:intergenic
AAGCTCTTTCTTGGACCCAA+AGG 0.556878 8_1:-57415931 Msa1203320:CDS
AAGGGAAGAGGTGCATCTAC+CGG 0.557014 8_1:-57415912 Msa1203320:CDS
TTAAAACCTCGGCAATAGCA+TGG 0.564036 8_1:+57415472 None:intergenic
AAAACATATTTGGAAGTCAA+AGG 0.564348 8_1:-57416347 Msa1203320:CDS
TTTCAGGGAGCAAGTGCAGA+AGG 0.564367 8_1:-57416407 Msa1203320:intron
GACTCATTCTCCTTCAAACC+AGG 0.565709 8_1:-57416281 Msa1203320:CDS
AAGAGTGCTGCATCATCTAA+GGG 0.565832 8_1:-57415819 Msa1203320:CDS
AATGGCACACGCTCACCACC+GGG 0.571911 8_1:+57416035 None:intergenic
TCTACTCCTCCATCAATGGT+TGG 0.592075 8_1:+57416302 None:intergenic
TAAGGTGATCTCTCATTGGA+TGG 0.593187 8_1:+57418201 None:intergenic
TCATTCACAGTTAAAGCAGA+AGG 0.599528 8_1:-57416221 Msa1203320:CDS
TGTAGCAGCTGCTTGGAGTG+AGG 0.605988 8_1:+57418045 None:intergenic
GCAACCCTAATTTAAAACCT+CGG 0.606394 8_1:+57415461 None:intergenic
CAAACACAAATCTTAGGCAG+TGG 0.607004 8_1:+57415316 None:intergenic
TCCGTCTGATGAAACCTCGA+AGG 0.607218 8_1:+57416115 None:intergenic
TTGTTGGATGACACGTGGCA+AGG 0.610098 8_1:+57418245 None:intergenic
GCACCCAAATCAGTGTCAGA+TGG 0.614300 8_1:+57415723 None:intergenic
TGTTTGATGGTGAAAAGGAA+TGG 0.616254 8_1:+57416017 None:intergenic
TTCAATCTCGTCGAGTGTGT+AGG 0.617038 8_1:+57416142 None:intergenic
GCTGAGCATACCAAACACCT+TGG 0.618527 8_1:+57415676 None:intergenic
GAATTAGTTGCAGAAGAACA+AGG 0.619282 8_1:+57415225 None:intergenic
AAAATTCCATGCTATTGCCG+AGG 0.620295 8_1:-57415478 Msa1203320:three_prime_UTR
TACAGAGACAACAAGAGCAG+AGG 0.623762 8_1:+57417841 None:intergenic
AACTAAGCCCGAGACTGGTG+AGG 0.626306 8_1:-57415772 Msa1203320:CDS
TTTGGGTGCTAAAGCACCAA+AGG 0.633259 8_1:-57415709 Msa1203320:CDS
GTGCAGAAGGTGCTCCAAAG+AGG 0.638842 8_1:-57416394 Msa1203320:CDS
GCAGTTGCATTGCCAGCTGG+AGG 0.640207 8_1:-57415879 Msa1203320:CDS
TCAAACAATTGGTAGCATCA+GGG 0.642850 8_1:-57416001 Msa1203320:CDS
GAACAGCAAATAGTTAACAG+AGG 0.645795 8_1:-57418079 Msa1203320:five_prime_UTR
GGGAAGCTGAACTGTGACTG+CGG 0.656907 8_1:+57416055 None:intergenic
CAATGTCCAACCATTGATGG+AGG 0.668753 8_1:-57416308 Msa1203320:CDS
CCGTCTGATGAAACCTCGAA+GGG 0.670853 8_1:+57416116 None:intergenic
GTCACAGTTCAGCTTCCCGG+TGG 0.672822 8_1:-57416050 Msa1203320:CDS
AGAGTGCTGCATCATCTAAG+GGG 0.683787 8_1:-57415818 Msa1203320:CDS
AACAACTTTCAAAAGCTGAG+AGG 0.696999 8_1:-57415565 Msa1203320:three_prime_UTR
ATGGTGTGTACATAAAACTG+AGG 0.721131 8_1:+57415368 None:intergenic
GTTTAGGTACCAACACAATG+CGG 0.745480 8_1:-57415197 Msa1203320:three_prime_UTR
TATTTGGTACCATCATACAG+AGG 0.747032 8_1:-57415954 Msa1203320:CDS
TTAGTTGCAGAAGAACAAGG+TGG 0.753425 8_1:+57415228 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAGATAAAATTAATTTTTT+TGG + chr8_1:57415805-57415824 None:intergenic 10.0%
!!! AGTATTAATATTTATTTTTG+CGG + chr8_1:57416139-57416158 None:intergenic 10.0%
!!! AAAAAATATATTTTGCATTT+TGG - chr8_1:57416399-57416418 Msa1203320:CDS 10.0%
!! TAAGAATATAAATTAATTTC+AGG - chr8_1:57416945-57416964 Msa1203320:intron 10.0%
!! AAGAATATAAATTAATTTCA+GGG - chr8_1:57416946-57416965 Msa1203320:intron 10.0%
!!! TATACTATTGTTGTTATTAT+TGG - chr8_1:57415676-57415695 Msa1203320:CDS 15.0%
!!! GTTATAGATCATTTTAATTA+AGG - chr8_1:57415734-57415753 Msa1203320:CDS 15.0%
!! AATTGAATAAAACTTTAGTA+TGG + chr8_1:57415884-57415903 None:intergenic 15.0%
!! ATATTAATATTACACAAACA+CGG + chr8_1:57416342-57416361 None:intergenic 15.0%
!! TTAATTTATATTCTTACTCT+TGG + chr8_1:57416941-57416960 None:intergenic 15.0%
!!! ATAGATCATTTTAATTAAGG+AGG - chr8_1:57415737-57415756 Msa1203320:CDS 20.0%
!!! ATTTTATCTTGTAACATAGT+AGG - chr8_1:57415814-57415833 Msa1203320:CDS 20.0%
!! TTTGGAAAGATTTCAAAATA+CGG + chr8_1:57415912-57415931 None:intergenic 20.0%
!! TTGAAATCTTTCCAAATAAA+TGG - chr8_1:57415916-57415935 Msa1203320:CDS 20.0%
!!! TAATATTTATTTTTGCGGTT+CGG + chr8_1:57416134-57416153 None:intergenic 20.0%
!!! ATGTGATTTTTATTTTGGAT+CGG - chr8_1:57416515-57416534 Msa1203320:intron 20.0%
!! AATTCAAAGCAAAACATATT+TGG - chr8_1:57417011-57417030 Msa1203320:intron 20.0%
!!! TTTGTTTTCTTCTATGTAAT+GGG - chr8_1:57418115-57418134 Msa1203320:five_prime_UTR 20.0%
!!! GGTAATGTTATTTGTTTTGT+TGG + chr8_1:57415142-57415161 None:intergenic 25.0%
! ATTTGAAGGTTGCAATTATT+TGG + chr8_1:57415225-57415244 None:intergenic 25.0%
!!! CAAACAAACTTGTTTTCAAT+AGG + chr8_1:57415265-57415284 None:intergenic 25.0%
! AACTTGAGCATGATATTAAA+AGG + chr8_1:57415857-57415876 None:intergenic 25.0%
! GACTAAATCATCCATTTATT+TGG + chr8_1:57415930-57415949 None:intergenic 25.0%
!!! CAAATATATTCGGTTTTTTG+CGG + chr8_1:57416028-57416047 None:intergenic 25.0%
! CAAATATATGCGGTTTAATT+TGG + chr8_1:57416441-57416460 None:intergenic 25.0%
! CAAATTAAACCGCATATATT+TGG - chr8_1:57416439-57416458 Msa1203320:intron 25.0%
! TCCAAAATAAAAATCACATG+CGG + chr8_1:57416514-57416533 None:intergenic 25.0%
! AGCAAATATACAACAAAACA+AGG - chr8_1:57416600-57416619 Msa1203320:intron 25.0%
! ACATTACATAACCAATACAA+GGG - chr8_1:57416676-57416695 Msa1203320:intron 25.0%
! AAAACATATTTGGAAGTCAA+AGG - chr8_1:57417021-57417040 Msa1203320:intron 25.0%
!! AATATGAACCAGCATTTTAA+GGG + chr8_1:57418030-57418049 None:intergenic 25.0%
!! TAATATGAACCAGCATTTTA+AGG + chr8_1:57418031-57418050 None:intergenic 25.0%
! TATCATCAAACACAAATCTT+AGG + chr8_1:57418061-57418080 None:intergenic 25.0%
! AAAACAAAGCTTATCATGTT+TGG + chr8_1:57418103-57418122 None:intergenic 25.0%
!!! CTTTGTTTTCTTCTATGTAA+TGG - chr8_1:57418114-57418133 Msa1203320:five_prime_UTR 25.0%
! GCAACTAATTCTAATTGTTT+AGG - chr8_1:57418155-57418174 Msa1203320:five_prime_UTR 25.0%
GATACTCTATGTCAAATTTC+TGG + chr8_1:57415086-57415105 None:intergenic 30.0%
! GTAAGATTTTGGATAGGATA+AGG + chr8_1:57415188-57415207 None:intergenic 30.0%
! GTATGAGTAAGATTTTGGAT+AGG + chr8_1:57415194-57415213 None:intergenic 30.0%
! CTATGGTATGAGTAAGATTT+TGG + chr8_1:57415199-57415218 None:intergenic 30.0%
!! GTTTTCAATAGGTTTTGTGT+TGG + chr8_1:57415254-57415273 None:intergenic 30.0%
!! ATTGGATTAGTTGTGATGAA+TGG - chr8_1:57415694-57415713 Msa1203320:CDS 30.0%
TAGACAATAACAAGTTGCAA+TGG - chr8_1:57415765-57415784 Msa1203320:CDS 30.0%
!!! TTTGCGGTTTTATTTTGGAT+CGG + chr8_1:57415984-57416003 None:intergenic 30.0%
CGCAAAAAACCGAATATATT+TGG - chr8_1:57416026-57416045 Msa1203320:CDS 30.0%
CAAACGCATCCAAATATATT+CGG + chr8_1:57416038-57416057 None:intergenic 30.0%
TTTGTAAAAACCGCTAAGAT+CGG - chr8_1:57416066-57416085 Msa1203320:CDS 30.0%
CACAAACACGGTAAAATAAT+AGG + chr8_1:57416330-57416349 None:intergenic 30.0%
!!! GTTTAATTTGGATCGGTTTT+TGG + chr8_1:57416429-57416448 None:intergenic 30.0%
!! ATATGCGGTTTAATTTGGAT+CGG + chr8_1:57416436-57416455 None:intergenic 30.0%
TAAACCGCATATATTTGGAT+CGG - chr8_1:57416444-57416463 Msa1203320:intron 30.0%
AATAAAAATCACATGCGGTT+CGG + chr8_1:57416509-57416528 None:intergenic 30.0%
!! ACCGCATGTGATTTTTATTT+TGG - chr8_1:57416510-57416529 Msa1203320:intron 30.0%
!! GTATTGGTTATGTAATGTGA+TGG + chr8_1:57416674-57416693 None:intergenic 30.0%
CACATTACATAACCAATACA+AGG - chr8_1:57416675-57416694 Msa1203320:intron 30.0%
CATTACATAACCAATACAAG+GGG - chr8_1:57416677-57416696 Msa1203320:intron 30.0%
!! TTAAAGTTAGGTTGGGAATT+AGG + chr8_1:57416718-57416737 None:intergenic 30.0%
AGGTGAATTAAAGTTAGGTT+GGG + chr8_1:57416725-57416744 None:intergenic 30.0%
AACCTAACTTTAATTCACCT+CGG - chr8_1:57416725-57416744 Msa1203320:intron 30.0%
ATGATCAAAATCCACTTGAA+TGG - chr8_1:57416836-57416855 Msa1203320:intron 30.0%
TGATCAAAATCCACTTGAAT+GGG - chr8_1:57416837-57416856 Msa1203320:intron 30.0%
TAATTAGTATCCCATTCAAG+TGG + chr8_1:57416850-57416869 None:intergenic 30.0%
!! ATTGTATTTTCCTGGTTTGA+AGG + chr8_1:57417100-57417119 None:intergenic 30.0%
! ATGTTAAAATCCAAGGTGTT+TGG - chr8_1:57417682-57417701 Msa1203320:intron 30.0%
TTTGAAAGTTGTTGAGTCAA+AGG + chr8_1:57417796-57417815 None:intergenic 30.0%
!!! TATTGCCGAGGTTTTAAATT+AGG - chr8_1:57417902-57417921 Msa1203320:CDS 30.0%
!!! ATTGCCGAGGTTTTAAATTA+GGG - chr8_1:57417903-57417922 Msa1203320:CDS 30.0%
! GCTTTTGCAAATATGGTTTT+AGG - chr8_1:57417940-57417959 Msa1203320:CDS 30.0%
!! ATGTCAAATTTCTGGTGAAC+TGG + chr8_1:57415078-57415097 None:intergenic 35.0%
! TTGCAATTATTTGGTGGCTA+TGG + chr8_1:57415216-57415235 None:intergenic 35.0%
TGAAGGTTGCAATTATTTGG+TGG + chr8_1:57415222-57415241 None:intergenic 35.0%
!! TGTGTTGGTTGAGAATTTGA+AGG + chr8_1:57415239-57415258 None:intergenic 35.0%
GAACAGCAAATAGTTAACAG+AGG - chr8_1:57415289-57415308 Msa1203320:three_prime_UTR 35.0%
AATAGTTAACAGAGGAGCAA+TGG - chr8_1:57415297-57415316 Msa1203320:three_prime_UTR 35.0%
!! GTCTACTCAATCTGTTTCTA+AGG - chr8_1:57415390-57415409 Msa1203320:three_prime_UTR 35.0%
!!! CAATCTGTTTCTAAGGCTTT+TGG - chr8_1:57415397-57415416 Msa1203320:three_prime_UTR 35.0%
!!! TGTTTCTAAGGCTTTTGGTT+TGG - chr8_1:57415402-57415421 Msa1203320:three_prime_UTR 35.0%
!!! GGTTTTATTTTGGATCGGTT+TGG + chr8_1:57415979-57415998 None:intergenic 35.0%
!!! ATCGGTTTGCGGTTTTATTT+TGG + chr8_1:57415989-57416008 None:intergenic 35.0%
!!! GGTTTTCGGTTTTTTTGGAT+CGG + chr8_1:57416007-57416026 None:intergenic 35.0%
! TTTGCGGTTTTCGGTTTTTT+TGG + chr8_1:57416012-57416031 None:intergenic 35.0%
!!! ATTCGGTTTTTTGCGGTTTT+CGG + chr8_1:57416021-57416040 None:intergenic 35.0%
CGAATATATTTGGATGCGTT+TGG - chr8_1:57416036-57416055 Msa1203320:CDS 35.0%
!!! TTTATTTTTGCGGTTCGGTT+TGG + chr8_1:57416129-57416148 None:intergenic 35.0%
! TTGCTACTTAGTCTCTAGTA+GGG + chr8_1:57416585-57416604 None:intergenic 35.0%
! TTTGCTACTTAGTCTCTAGT+AGG + chr8_1:57416586-57416605 None:intergenic 35.0%
ACATCATAAACCCCTTGTAT+TGG + chr8_1:57416690-57416709 None:intergenic 35.0%
GAGGTGAATTAAAGTTAGGT+TGG + chr8_1:57416726-57416745 None:intergenic 35.0%
ATCCGAGGTGAATTAAAGTT+AGG + chr8_1:57416730-57416749 None:intergenic 35.0%
TATTTGGAAGTCAAAGGAAC+CGG - chr8_1:57417027-57417046 Msa1203320:intron 35.0%
! TTCTTGGCATTGTATTTTCC+TGG + chr8_1:57417108-57417127 None:intergenic 35.0%
GCTTTAACTGTGAATGAAGT+TGG + chr8_1:57417144-57417163 None:intergenic 35.0%
TCATTCACAGTTAAAGCAGA+AGG - chr8_1:57417147-57417166 Msa1203320:intron 35.0%
GTCAAATTTGAGGAGAAAGA+TGG - chr8_1:57417279-57417298 Msa1203320:intron 35.0%
!! TGTTTGATGGTGAAAAGGAA+TGG + chr8_1:57417354-57417373 None:intergenic 35.0%
!! CCAATTGTTTGATGGTGAAA+AGG + chr8_1:57417359-57417378 None:intergenic 35.0%
! CCTTTTCACCATCAAACAAT+TGG - chr8_1:57417356-57417375 Msa1203320:intron 35.0%
TGATGCTACCAATTGTTTGA+TGG + chr8_1:57417367-57417386 None:intergenic 35.0%
! ATCAAACAATTGGTAGCATC+AGG - chr8_1:57417366-57417385 Msa1203320:intron 35.0%
! TCAAACAATTGGTAGCATCA+GGG - chr8_1:57417367-57417386 Msa1203320:intron 35.0%
TATTTGGTACCATCATACAG+AGG - chr8_1:57417414-57417433 Msa1203320:intron 35.0%
AGATGAAGAAGAACTTGGTA+AGG - chr8_1:57417518-57417537 Msa1203320:intron 35.0%
!! CCTTGGATTTTAACATCCTT+TGG + chr8_1:57417678-57417697 None:intergenic 35.0%
CCAAAGGATGTTAAAATCCA+AGG - chr8_1:57417675-57417694 Msa1203320:intron 35.0%
AACAACTTTCAAAAGCTGAG+AGG - chr8_1:57417803-57417822 Msa1203320:intron 35.0%
! ACAATGTGCTTTTAATGTCG+AGG - chr8_1:57417861-57417880 Msa1203320:CDS 35.0%
! GCAACCCTAATTTAAAACCT+CGG + chr8_1:57417910-57417929 None:intergenic 35.0%
!! CACGATTGCTTTTGCAAATA+TGG - chr8_1:57417933-57417952 Msa1203320:CDS 35.0%
ATGGTGTGTACATAAAACTG+AGG + chr8_1:57418003-57418022 None:intergenic 35.0%
!! TCAGTTTTATGTACACACCA+TGG - chr8_1:57418002-57418021 Msa1203320:CDS 35.0%
GAATTAGTTGCAGAAGAACA+AGG + chr8_1:57418146-57418165 None:intergenic 35.0%
TTACAAGCAAGTATCTTGCT+AGG - chr8_1:57418230-57418249 Msa1203320:five_prime_UTR 35.0%
!! TTGTTTTGTTGGATGACACG+TGG + chr8_1:57415131-57415150 None:intergenic 40.0%
ATCTCTCATTGGATGGTTCA+AGG + chr8_1:57415163-57415182 None:intergenic 40.0%
TAAGGTGATCTCTCATTGGA+TGG + chr8_1:57415170-57415189 None:intergenic 40.0%
AGGATAAGGTGATCTCTCAT+TGG + chr8_1:57415174-57415193 None:intergenic 40.0%
CTGTTGCTACGTAACTTAGT+TGG + chr8_1:57415358-57415377 None:intergenic 40.0%
!!! GCTTTTGGTTTGGAACACTA+TGG - chr8_1:57415412-57415431 Msa1203320:three_prime_UTR 40.0%
! TTTGGAACACTATGGAGCTA+AGG - chr8_1:57415420-57415439 Msa1203320:three_prime_UTR 40.0%
TTCACTTCAGTCTGACTTCA+AGG - chr8_1:57415450-57415469 Msa1203320:three_prime_UTR 40.0%
!! GTTGAAGCTTCTAAGATTGC+TGG - chr8_1:57415490-57415509 Msa1203320:three_prime_UTR 40.0%
!!! GGTTTTTTTGGATCGGTTTG+CGG + chr8_1:57416000-57416019 None:intergenic 40.0%
AAAAACCGCTAAGATCGGAT+CGG - chr8_1:57416071-57416090 Msa1203320:CDS 40.0%
CGAACCGATCCAAATATATG+CGG + chr8_1:57416451-57416470 None:intergenic 40.0%
CGCATATATTTGGATCGGTT+CGG - chr8_1:57416449-57416468 Msa1203320:intron 40.0%
!! ATATTTGGATCGGTTCGGTT+CGG - chr8_1:57416454-57416473 Msa1203320:intron 40.0%
! TGCTACTTAGTCTCTAGTAG+GGG + chr8_1:57416584-57416603 None:intergenic 40.0%
AACCAATGTCCAACCATTGA+TGG - chr8_1:57417057-57417076 Msa1203320:intron 40.0%
!!! TGGTGTTTTGGAATGCAAGT+GGG + chr8_1:57417188-57417207 None:intergenic 40.0%
!!! TTGGTGTTTTGGAATGCAAG+TGG + chr8_1:57417189-57417208 None:intergenic 40.0%
!!! GTGTCATGAGTTTGGTGTTT+TGG + chr8_1:57417200-57417219 None:intergenic 40.0%
GGTTAAACGTGTCATGAGTT+TGG + chr8_1:57417208-57417227 None:intergenic 40.0%
AGACGGATCTGTCAAATTTG+AGG - chr8_1:57417269-57417288 Msa1203320:intron 40.0%
AAAGAGCTTCCTCTGTATGA+TGG + chr8_1:57417426-57417445 None:intergenic 40.0%
ATACAGAGGAAGCTCTTTCT+TGG - chr8_1:57417428-57417447 Msa1203320:intron 40.0%
TGCAACTGCATTGTCATAAC+CGG + chr8_1:57417478-57417497 None:intergenic 40.0%
AGAGGAGATGAAGAAGAACT+TGG - chr8_1:57417513-57417532 Msa1203320:intron 40.0%
!! AAGAGTGCTGCATCATCTAA+GGG - chr8_1:57417549-57417568 Msa1203320:intron 40.0%
AAAATTCCATGCTATTGCCG+AGG - chr8_1:57417890-57417909 Msa1203320:CDS 40.0%
TTAAAACCTCGGCAATAGCA+TGG + chr8_1:57417899-57417918 None:intergenic 40.0%
CAAACACAAATCTTAGGCAG+TGG + chr8_1:57418055-57418074 None:intergenic 40.0%
TTAGTTGCAGAAGAACAAGG+TGG + chr8_1:57418143-57418162 None:intergenic 40.0%
GTTTAGGTACCAACACAATG+CGG - chr8_1:57418171-57418190 Msa1203320:five_prime_UTR 40.0%
!! AAATGGAGCACTGAGTTACT+AGG - chr8_1:57418196-57418215 Msa1203320:five_prime_UTR 40.0%
ACGTGGCAAGGTTCTTGATT+TGG + chr8_1:57415114-57415133 None:intergenic 45.0%
TACAGAGACAACAAGAGCAG+AGG + chr8_1:57415530-57415549 None:intergenic 45.0%
AGTTGTGATGAATGGTCTGC+TGG - chr8_1:57415702-57415721 Msa1203320:CDS 45.0%
ATTTAGTCCCCCTAGAGACT+AGG - chr8_1:57415942-57415961 Msa1203320:CDS 45.0%
TTTAGTCCCCCTAGAGACTA+GGG - chr8_1:57415943-57415962 Msa1203320:CDS 45.0%
TTGAACACCCCTAGTCTCTA+GGG + chr8_1:57415954-57415973 None:intergenic 45.0%
TTTGAACACCCCTAGTCTCT+AGG + chr8_1:57415955-57415974 None:intergenic 45.0%
GAAATCCGATCCGATCTTAG+CGG + chr8_1:57416079-57416098 None:intergenic 45.0%
GCTAAGATCGGATCGGATTT+CGG - chr8_1:57416078-57416097 Msa1203320:CDS 45.0%
!!! TTTTGCGGTTCGGTTTGGTT+CGG + chr8_1:57416124-57416143 None:intergenic 45.0%
!! AAATCACATGCGGTTCGGTT+CGG + chr8_1:57416504-57416523 None:intergenic 45.0%
TCTGGTTGCTGAAACATGAG+AGG + chr8_1:57416753-57416772 None:intergenic 45.0%
TCTCATGTTTCAGCAACCAG+AGG - chr8_1:57416752-57416771 Msa1203320:intron 45.0%
GGTCAGCTGTTGGATTTCAA+AGG - chr8_1:57416773-57416792 Msa1203320:intron 45.0%
CTATCTCTGCAATCAGAGGT+CGG + chr8_1:57416813-57416832 None:intergenic 45.0%
GACCTCTGATTGCAGAGATA+GGG - chr8_1:57416812-57416831 Msa1203320:intron 45.0%
TTCCCTATCTCTGCAATCAG+AGG + chr8_1:57416817-57416836 None:intergenic 45.0%
!! TGGACATTGGTTTGCTGTTC+CGG + chr8_1:57417049-57417068 None:intergenic 45.0%
CTCCATCAATGGTTGGACAT+TGG + chr8_1:57417062-57417081 None:intergenic 45.0%
CAATGTCCAACCATTGATGG+AGG - chr8_1:57417060-57417079 Msa1203320:intron 45.0%
TCTACTCCTCCATCAATGGT+TGG + chr8_1:57417069-57417088 None:intergenic 45.0%
TGAGTCTACTCCTCCATCAA+TGG + chr8_1:57417073-57417092 None:intergenic 45.0%
GACTCATTCTCCTTCAAACC+AGG - chr8_1:57417087-57417106 Msa1203320:intron 45.0%
TGGTTCGAGGCAGAATTTCT+TGG + chr8_1:57417124-57417143 None:intergenic 45.0%
!! CTGTGAATGAAGTTGGTTCG+AGG + chr8_1:57417137-57417156 None:intergenic 45.0%
!!! GGTGTTTTGGAATGCAAGTG+GGG + chr8_1:57417187-57417206 None:intergenic 45.0%
TTCAATCTCGTCGAGTGTGT+AGG + chr8_1:57417229-57417248 None:intergenic 45.0%
TACACACTCGACGAGATTGA+AGG - chr8_1:57417228-57417247 Msa1203320:intron 45.0%
GAGCTTCAGTGGTGAGTATT+TGG - chr8_1:57417398-57417417 Msa1203320:intron 45.0%
AAGCTCTTTCTTGGACCCAA+AGG - chr8_1:57417437-57417456 Msa1203320:intron 45.0%
AGCTCTTTCTTGGACCCAAA+GGG - chr8_1:57417438-57417457 Msa1203320:intron 45.0%
TAGATGCACCTCTTCCCTTT+GGG + chr8_1:57417455-57417474 None:intergenic 45.0%
!! CAAGAGTGCTGCATCATCTA+AGG - chr8_1:57417548-57417567 Msa1203320:intron 45.0%
!! AGAGTGCTGCATCATCTAAG+GGG - chr8_1:57417550-57417569 Msa1203320:intron 45.0%
ACCAATAACCTCACCAGTCT+CGG + chr8_1:57417607-57417626 None:intergenic 45.0%
! TCAGCCATCTGACACTGATT+TGG - chr8_1:57417641-57417660 Msa1203320:intron 45.0%
!! CAGCCATCTGACACTGATTT+GGG - chr8_1:57417642-57417661 Msa1203320:intron 45.0%
! TTTGGGTGCTAAAGCACCAA+AGG - chr8_1:57417659-57417678 Msa1203320:intron 45.0%
!! CCAGCATTTTAAGGGATCCA+TGG + chr8_1:57418022-57418041 None:intergenic 45.0%
CCATGGATCCCTTAAAATGC+TGG - chr8_1:57418019-57418038 Msa1203320:CDS 45.0%
ACCAACACAATGCGGCTAAA+TGG - chr8_1:57418179-57418198 Msa1203320:five_prime_UTR 45.0%
TCCATTTAGCCGCATTGTGT+TGG + chr8_1:57418183-57418202 None:intergenic 45.0%
CCGGTACACTGCAAATTTCA+GGG + chr8_1:57418295-57418314 None:intergenic 45.0%
CCCTGAAATTTGCAGTGTAC+CGG - chr8_1:57418292-57418311 Msa1203320:five_prime_UTR 45.0%
CCTGAAATTTGCAGTGTACC+GGG - chr8_1:57418293-57418312 Msa1203320:five_prime_UTR 45.0%
!!! AAGATAAAATTAATTTTTTT+GGG + chr8_1:57415804-57415823 None:intergenic 5.0%
TTGTTGGATGACACGTGGCA+AGG + chr8_1:57415126-57415145 None:intergenic 50.0%
TTAGTCCCCCTAGAGACTAG+GGG - chr8_1:57415944-57415963 Msa1203320:CDS 50.0%
TGAACACCCCTAGTCTCTAG+GGG + chr8_1:57415953-57415972 None:intergenic 50.0%
!! TGCGGTTTGGATCGGTTTTG+AGG + chr8_1:57416552-57416571 None:intergenic 50.0%
CTGAAACATGAGAGGATCCG+AGG + chr8_1:57416745-57416764 None:intergenic 50.0%
GAAATCCAACAGCTGACCTC+TGG + chr8_1:57416771-57416790 None:intergenic 50.0%
CGACCTCTGATTGCAGAGAT+AGG - chr8_1:57416811-57416830 Msa1203320:intron 50.0%
TTTCAGGGAGCAAGTGCAGA+AGG - chr8_1:57416961-57416980 Msa1203320:intron 50.0%
TCGTCGAATGTCAGCCTCTT+TGG + chr8_1:57416991-57417010 None:intergenic 50.0%
! GAATGCAAGTGGGGTGTTCT+TGG + chr8_1:57417178-57417197 None:intergenic 50.0%
CCGTCTGATGAAACCTCGAA+GGG + chr8_1:57417255-57417274 None:intergenic 50.0%
CCCTTCGAGGTTTCATCAGA+CGG - chr8_1:57417252-57417271 Msa1203320:intron 50.0%
TCCGTCTGATGAAACCTCGA+AGG + chr8_1:57417256-57417275 None:intergenic 50.0%
TACTCACCACTGAAGCTCTC+TGG + chr8_1:57417396-57417415 None:intergenic 50.0%
TTCTTGGACCCAAAGGGAAG+AGG - chr8_1:57417444-57417463 Msa1203320:intron 50.0%
GTAGATGCACCTCTTCCCTT+TGG + chr8_1:57417456-57417475 None:intergenic 50.0%
! AAGGGAAGAGGTGCATCTAC+CGG - chr8_1:57417456-57417475 Msa1203320:intron 50.0%
AATGCAGTTGCATTGCCAGC+TGG - chr8_1:57417486-57417505 Msa1203320:intron 50.0%
ACTCAAACTAAGCCCGAGAC+TGG - chr8_1:57417591-57417610 Msa1203320:intron 50.0%
CCAATAACCTCACCAGTCTC+GGG + chr8_1:57417606-57417625 None:intergenic 50.0%
GCACCCAAATCAGTGTCAGA+TGG + chr8_1:57417648-57417667 None:intergenic 50.0%
GCTGAGCATACCAAACACCT+TGG + chr8_1:57417695-57417714 None:intergenic 50.0%
CCCGGTACACTGCAAATTTC+AGG + chr8_1:57418296-57418315 None:intergenic 50.0%
TGTAGCAGCTGCTTGGAGTG+AGG + chr8_1:57415326-57415345 None:intergenic 55.0%
GCATGAGTGTAGCAGCTGCT+TGG + chr8_1:57415333-57415352 None:intergenic 55.0%
GAACACCCCTAGTCTCTAGG+GGG + chr8_1:57415952-57415971 None:intergenic 55.0%
!! CGGTTCGGTTTGGTTCGGTT+CGG + chr8_1:57416119-57416138 None:intergenic 55.0%
!! ACATGCGGTTCGGTTCGGTT+TGG + chr8_1:57416499-57416518 None:intergenic 55.0%
!! GTCTCTAGTAGGGGTGTTCG+CGG + chr8_1:57416575-57416594 None:intergenic 55.0%
AGCAACCAGAGGTCAGCTGT+TGG - chr8_1:57416763-57416782 Msa1203320:intron 55.0%
TGCAATCAGAGGTCGGCTGA+TGG + chr8_1:57416806-57416825 None:intergenic 55.0%
!! GTGCAGAAGGTGCTCCAAAG+AGG - chr8_1:57416974-57416993 Msa1203320:intron 55.0%
CGAGATTGAAGGACCCTTCG+AGG - chr8_1:57417239-57417258 Msa1203320:intron 55.0%
GGGAAGCTGAACTGTGACTG+CGG + chr8_1:57417316-57417335 None:intergenic 55.0%
GCAGTCACAGTTCAGCTTCC+CGG - chr8_1:57417315-57417334 Msa1203320:intron 55.0%
TCATCTCCTCTTCCTCCAGC+TGG + chr8_1:57417504-57417523 None:intergenic 55.0%
AACTAAGCCCGAGACTGGTG+AGG - chr8_1:57417596-57417615 Msa1203320:intron 55.0%
CCCGAGACTGGTGAGGTTAT+TGG - chr8_1:57417603-57417622 Msa1203320:intron 55.0%
! GTTCGCGGTGCGGTTTGGAT+CGG + chr8_1:57416560-57416579 None:intergenic 60.0%
!! TAGTAGGGGTGTTCGCGGTG+CGG + chr8_1:57416570-57416589 None:intergenic 60.0%
GTCACAGTTCAGCTTCCCGG+TGG - chr8_1:57417318-57417337 Msa1203320:intron 60.0%
AATGGCACACGCTCACCACC+GGG + chr8_1:57417336-57417355 None:intergenic 60.0%
GAATGGCACACGCTCACCAC+CGG + chr8_1:57417337-57417356 None:intergenic 60.0%
GGGAAGCCAGAGAGCTTCAG+TGG - chr8_1:57417387-57417406 Msa1203320:intron 60.0%
GCAGTTGCATTGCCAGCTGG+AGG - chr8_1:57417489-57417508 Msa1203320:intron 60.0%
GCATTGCCAGCTGGAGGAAG+AGG - chr8_1:57417495-57417514 Msa1203320:intron 60.0%
! GGGGTGTTCGCGGTGCGGTT+TGG + chr8_1:57416565-57416584 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 57415072 57418318 57415072 ID=Msa1203320;Name=Msa1203320
chr8_1 mRNA 57415072 57418318 57415072 ID=Msa1203320-mRNA-1;Parent=Msa1203320;Name=Msa1203320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=244|1|1|1|1|1|2|593|329
chr8_1 exon 57415072 57416423 57415072 ID=Msa1203320-mRNA-1:exon:18699;Parent=Msa1203320-mRNA-1
chr8_1 exon 57417844 57418318 57417844 ID=Msa1203320-mRNA-1:exon:18698;Parent=Msa1203320-mRNA-1
chr8_1 five_prime_UTR 57418075 57418318 57418075 ID=Msa1203320-mRNA-1:five_prime_utr;Parent=Msa1203320-mRNA-1
chr8_1 CDS 57417844 57418074 57417844 ID=Msa1203320-mRNA-1:cds;Parent=Msa1203320-mRNA-1
chr8_1 CDS 57415665 57416423 57415665 ID=Msa1203320-mRNA-1:cds;Parent=Msa1203320-mRNA-1
chr8_1 three_prime_UTR 57415072 57415664 57415072 ID=Msa1203320-mRNA-1:three_prime_utr;Parent=Msa1203320-mRNA-1
Gene Sequence

>Msa1203320

ATGGCAGCCTCACTCCAAGCAGCTGCTACACTCATGCAACCAACTAAGTTACGTAGCAACAGTTTGCAGCTTAAGTCTACTCAATCTGTTTCTAAGGCTTTTGGTTTGGAACACTATGGAGCTAAGGTTACTTGTTCACTTCAGTCTGACTTCAAGGAGTTGACTCACAAGTTTGTTGAAGCTTCTAAGATTGCTGGATTTGCTCTTGCTACCTCTGCTCTTGTTGTCTCTGGAGCAAGTGCAGAAGGTGCTCCAAAGAGGCTGACATTCGACGAAATTCAAAGCAAAACATATTTGGAAGTCAAAGGAACCGGAACAGCAAACCAATGTCCAACCATTGATGGAGGAGTAGACTCATTCTCCTTCAAACCAGGAAAATACAATGCCAAGAAATTCTGCCTCGAACCAACTTCATTCACAGTTAAAGCAGAAGGTGTAACCAAGAACACCCCACTTGCATTCCAAAACACCAAACTCATGACACGTTTAACCTACACACTCGACGAGATTGAAGGACCCTTCGAGGTTTCATCAGACGGATCTGTCAAATTTGAGGAGAAAGATGGCATTGACTACGCCGCAGTCACAGTTCAGCTTCCCGGTGGTGAGCGTGTGCCATTCCTTTTCACCATCAAACAATTGGTAGCATCAGGGAAGCCAGAGAGCTTCAGTGGTGAGTATTTGGTACCATCATACAGAGGAAGCTCTTTCTTGGACCCAAAGGGAAGAGGTGCATCTACCGGTTATGACAATGCAGTTGCATTGCCAGCTGGAGGAAGAGGAGATGAAGAAGAACTTGGTAAGGAAAACAACAAGAGTGCTGCATCATCTAAGGGGAAAATCACATTGAGTGTTACTCAAACTAAGCCCGAGACTGGTGAGGTTATTGGTGTGTTTGAGAGTATTCAGCCATCTGACACTGATTTGGGTGCTAAAGCACCAAAGGATGTTAAAATCCAAGGTGTTTGGTATGCTCAGCTTGAGTCATAG

Protein sequence

>Msa1203320

MAASLQAAATLMQPTKLRSNSLQLKSTQSVSKAFGLEHYGAKVTCSLQSDFKELTHKFVEASKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKFCLEPTSFTVKAEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVSSDGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEYLVPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES*