Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042110 | sp|Q71DJ5|LIP1_ARATH | 63.271 | 373 | 126 | 1 | 34 | 406 | 31 | 392 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042110 | Msa0089390 | 0.942200 | 1.094956e-101 | -8.615850e-47 |
| Msa0042110 | Msa1143910 | 0.803716 | 3.052349e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042110 | MtrunA17_Chr1g0207891 | 98.034 | 407 | 6 | 2 | 1 | 407 | 1 | 405 | 0.0 | 822 |
| Msa0042110 | MtrunA17_Chr5g0438751 | 40.053 | 377 | 208 | 5 | 29 | 399 | 36 | 400 | 4.04e-105 | 316 |
| Msa0042110 | MtrunA17_Chr7g0250081 | 40.691 | 376 | 199 | 6 | 35 | 400 | 43 | 404 | 9.10e-102 | 308 |
| Msa0042110 | MtrunA17_Chr7g0225611 | 39.314 | 379 | 217 | 4 | 29 | 401 | 41 | 412 | 9.31e-101 | 305 |
| Msa0042110 | MtrunA17_Chr6g0462811 | 39.892 | 371 | 168 | 6 | 35 | 400 | 44 | 364 | 2.39e-89 | 275 |
| Msa0042110 | MtrunA17_Chr3g0120021 | 36.562 | 413 | 205 | 7 | 35 | 400 | 43 | 445 | 1.58e-86 | 270 |
| Msa0042110 | MtrunA17_Chr7g0250091 | 40.984 | 305 | 157 | 4 | 101 | 399 | 64 | 351 | 2.81e-78 | 246 |
| Msa0042110 | MtrunA17_Chr6g0462831 | 41.132 | 265 | 144 | 6 | 144 | 400 | 3 | 263 | 5.13e-59 | 193 |
| Msa0042110 | MtrunA17_Chr3g0120041 | 44.565 | 184 | 92 | 1 | 35 | 218 | 47 | 220 | 4.77e-51 | 172 |
| Msa0042110 | MtrunA17_Chr3g0119931 | 42.697 | 178 | 92 | 2 | 35 | 212 | 43 | 210 | 3.20e-48 | 164 |
| Msa0042110 | MtrunA17_Chr6g0459361 | 36.816 | 201 | 120 | 3 | 19 | 218 | 30 | 224 | 1.40e-44 | 155 |
| Msa0042110 | MtrunA17_Chr6g0459381 | 36.607 | 224 | 130 | 4 | 1 | 218 | 7 | 224 | 1.87e-44 | 155 |
| Msa0042110 | MtrunA17_Chr6g0459401 | 39.459 | 185 | 105 | 3 | 35 | 218 | 46 | 224 | 7.51e-44 | 153 |
| Msa0042110 | MtrunA17_Chr6g0459421 | 39.459 | 185 | 105 | 3 | 35 | 218 | 46 | 224 | 8.98e-44 | 153 |
| Msa0042110 | MtrunA17_Chr3g0120031 | 43.636 | 165 | 85 | 4 | 244 | 400 | 8 | 172 | 2.07e-39 | 139 |
| Msa0042110 | MtrunA17_Chr3g0119941 | 47.101 | 138 | 68 | 3 | 268 | 400 | 30 | 167 | 1.37e-36 | 131 |
| Msa0042110 | MtrunA17_Chr6g0459391 | 36.486 | 148 | 88 | 2 | 258 | 399 | 25 | 172 | 3.34e-31 | 117 |
| Msa0042110 | MtrunA17_Chr5g0394731 | 36.364 | 132 | 79 | 1 | 111 | 242 | 20 | 146 | 2.39e-28 | 108 |
| Msa0042110 | MtrunA17_Chr6g0459411 | 34.559 | 136 | 83 | 2 | 270 | 399 | 5 | 140 | 7.89e-24 | 96.3 |
| Msa0042110 | MtrunA17_Chr6g0459431 | 33.824 | 136 | 84 | 2 | 270 | 399 | 5 | 140 | 1.38e-22 | 92.8 |
| Msa0042110 | MtrunA17_Chr6g0459371 | 35.632 | 87 | 51 | 1 | 318 | 399 | 1 | 87 | 4.17e-16 | 73.2 |
| Msa0042110 | MtrunA17_Chr5g0421521 | 90.625 | 32 | 3 | 0 | 269 | 300 | 900 | 931 | 9.57e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042110 | AT2G15230.1 | 63.271 | 373 | 126 | 1 | 34 | 406 | 31 | 392 | 0.0 | 511 |
| Msa0042110 | AT5G14180.1 | 36.816 | 402 | 234 | 7 | 6 | 399 | 26 | 415 | 3.80e-95 | 291 |
| Msa0042110 | AT5G14180.4 | 40.065 | 307 | 178 | 3 | 99 | 399 | 9 | 315 | 2.19e-82 | 255 |
| Msa0042110 | AT5G14180.2 | 40.000 | 305 | 177 | 3 | 101 | 399 | 2 | 306 | 3.38e-82 | 254 |
| Msa0042110 | AT5G14180.3 | 36.913 | 298 | 173 | 5 | 6 | 300 | 26 | 311 | 8.19e-68 | 218 |
| Msa0042110 | AT5G14180.5 | 35.448 | 268 | 158 | 5 | 6 | 270 | 26 | 281 | 1.41e-54 | 183 |
Find 132 sgRNAs with CRISPR-Local
Find 367 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATTGGTGAAACAGAATT+TGG | 0.182173 | 1_1:+72690259 | Msa0042110:five_prime_UTR |
| CAGAGAGTTGGTTGTTGTTT+GGG | 0.186644 | 1_1:-72690369 | None:intergenic |
| TTGCCTTTGTTGATGGCTTA+TGG | 0.191042 | 1_1:+72695506 | Msa0042110:CDS |
| TTATATTACATTCATCTTAA+TGG | 0.199327 | 1_1:-72695732 | None:intergenic |
| CAGATCATTGCCTTTGTTGA+TGG | 0.268391 | 1_1:+72695499 | Msa0042110:CDS |
| ACCTTCTCCAAGTACGATTA+TGG | 0.280197 | 1_1:+72695410 | Msa0042110:CDS |
| ACAAAGGATGGTTTCTTGTT+AGG | 0.282718 | 1_1:+72690553 | Msa0042110:CDS |
| ACAGAGAGTTGGTTGTTGTT+TGG | 0.284882 | 1_1:-72690370 | None:intergenic |
| TGCCTTTGTTGATGGCTTAT+GGG | 0.286118 | 1_1:+72695507 | Msa0042110:CDS |
| ATATGATCCAAGTATGAAAT+TGG | 0.303318 | 1_1:-72692909 | None:intergenic |
| TTCACCAATCCTATTATTGA+TGG | 0.307707 | 1_1:-72690248 | None:intergenic |
| GCTTCTCCATGGCCTATTCA+TGG | 0.309670 | 1_1:+72690663 | Msa0042110:CDS |
| CCATCATCACCATCAATAAT+AGG | 0.311385 | 1_1:+72690239 | Msa0042110:five_prime_UTR |
| TCCCTTATCATTCAATGGTT+TGG | 0.313123 | 1_1:-72695910 | None:intergenic |
| ATGCGGCTAAGGTCAAATTT+TGG | 0.319645 | 1_1:-72695473 | None:intergenic |
| TTGGTTTGCTACTAATTGAT+TGG | 0.341793 | 1_1:+72695853 | Msa0042110:three_prime_UTR |
| TCTGTCTCCAATTTCATACT+TGG | 0.350785 | 1_1:+72692902 | Msa0042110:CDS |
| GGATTGGTGAAACAGAATTT+GGG | 0.356943 | 1_1:+72690260 | Msa0042110:five_prime_UTR |
| TTGAAGTTAAAACCATTGTT+TGG | 0.360541 | 1_1:+72695876 | Msa0042110:three_prime_UTR |
| ATCAGTTTCTTCAAGTCAAT+GGG | 0.364667 | 1_1:+72695677 | Msa0042110:CDS |
| CATCAGTTTCTTCAAGTCAA+TGG | 0.364835 | 1_1:+72695676 | Msa0042110:CDS |
| AACTCAAAGTTATTTGTAGT+TGG | 0.368834 | 1_1:+72692714 | Msa0042110:CDS |
| GGATCATATTAGTGCACCTT+TGG | 0.375065 | 1_1:+72692923 | Msa0042110:CDS |
| TGCACCTTTGGTACTAAGAA+TGG | 0.380394 | 1_1:+72692935 | Msa0042110:CDS |
| CACAGAAGTATTTACTGTCT+TGG | 0.380650 | 1_1:+72695834 | Msa0042110:three_prime_UTR |
| TTCCAAACCATTGAATGATA+AGG | 0.385726 | 1_1:+72695908 | Msa0042110:three_prime_UTR |
| GCAAAGAAAATAGTATATAA+AGG | 0.402286 | 1_1:-72696007 | None:intergenic |
| TCACTCCAACGCGCCTCAAT+TGG | 0.403574 | 1_1:-72690159 | None:intergenic |
| ACTCAAAGTTATTTGTAGTT+GGG | 0.404963 | 1_1:+72692715 | Msa0042110:CDS |
| TGTAATCTAATTTATACTCT+CGG | 0.413411 | 1_1:-72690199 | None:intergenic |
| ATCTTTATCAGAGAAGAATA+AGG | 0.417364 | 1_1:+72691557 | Msa0042110:CDS |
| ACATAAGGAAATCAAGAGAT+TGG | 0.417842 | 1_1:-72693225 | None:intergenic |
| GACATGCTGTCATCCATTAC+AGG | 0.418206 | 1_1:+72693269 | Msa0042110:CDS |
| GTGGTTTATCTTGAAAACTA+TGG | 0.418535 | 1_1:+72695599 | Msa0042110:CDS |
| TCCAAACCATTGAATGATAA+GGG | 0.418755 | 1_1:+72695909 | Msa0042110:three_prime_UTR |
| AGTAAGTAGTAACCATGAAT+AGG | 0.420033 | 1_1:-72690675 | None:intergenic |
| AAATACACCAGAACAATCAT+TGG | 0.421081 | 1_1:+72691458 | Msa0042110:CDS |
| ACCACCTAACAGTTAGTATA+GGG | 0.423146 | 1_1:+72690114 | Msa0042110:five_prime_UTR |
| AAGCTTTCCATAATCGTACT+TGG | 0.430219 | 1_1:-72695417 | None:intergenic |
| GTAATCTAATTTATACTCTC+GGG | 0.443767 | 1_1:-72690198 | None:intergenic |
| GGAAAAGATGCACATTGATC+AGG | 0.447013 | 1_1:+72692956 | Msa0042110:CDS |
| GGGTGCGCTGCCGCCGTCGA+AGG | 0.448632 | 1_1:-72690346 | None:intergenic |
| CATCAACAAAGGCAATGATC+TGG | 0.449214 | 1_1:-72695498 | None:intergenic |
| GGCTTCATCCTTGCGGATCA+AGG | 0.449610 | 1_1:+72691480 | Msa0042110:CDS |
| TTCATCAGCTGAATTTCAAA+AGG | 0.450695 | 1_1:+72693082 | Msa0042110:CDS |
| AGTGATATATACTCACAGTA+TGG | 0.454131 | 1_1:-72696035 | None:intergenic |
| GTTTCCGAAGGATAAGAGTA+TGG | 0.460626 | 1_1:-72690313 | None:intergenic |
| AACCACCTAACAGTTAGTAT+AGG | 0.469571 | 1_1:+72690113 | Msa0042110:five_prime_UTR |
| GACTTGAAGAAACTGATGAT+AGG | 0.472607 | 1_1:-72695671 | None:intergenic |
| AGAGAGTTGGTTGTTGTTTG+GGG | 0.478775 | 1_1:-72690368 | None:intergenic |
| ATGAAGCCCAATGATTGTTC+TGG | 0.479529 | 1_1:-72691465 | None:intergenic |
| AGGCCATGGAGAAGCAGAAC+CGG | 0.486022 | 1_1:-72690655 | None:intergenic |
| GCCTTTGTTGATGGCTTATG+GGG | 0.492263 | 1_1:+72695508 | Msa0042110:CDS |
| ATGATCTGGGTATGCGGCTA+AGG | 0.493826 | 1_1:-72695484 | None:intergenic |
| ACCACCCTATACTAACTGTT+AGG | 0.495556 | 1_1:-72690118 | None:intergenic |
| ATTGAGGCGCGTTGGAGTGA+TGG | 0.499879 | 1_1:+72690162 | Msa0042110:five_prime_UTR |
| TCATTTCCGCAAGATCGTAC+AGG | 0.501400 | 1_1:-72692668 | None:intergenic |
| ATTTGTAGTTGGGCATTCAC+AGG | 0.502438 | 1_1:+72692725 | Msa0042110:CDS |
| ATCACCATCAATAATAGGAT+TGG | 0.503513 | 1_1:+72690244 | Msa0042110:five_prime_UTR |
| CATGGAACATACTCTGGAAA+AGG | 0.507066 | 1_1:-72694338 | None:intergenic |
| ATTGCCATACTCTTATCCTT+CGG | 0.509142 | 1_1:+72690309 | Msa0042110:CDS |
| CCTCCGGTTCTGCTTCTCCA+TGG | 0.509579 | 1_1:+72690652 | Msa0042110:CDS |
| ATTTATACTCTCGGGTTCGA+TGG | 0.512025 | 1_1:-72690190 | None:intergenic |
| ATATACTCACAGTATGGTAA+TGG | 0.514581 | 1_1:-72696029 | None:intergenic |
| TTACTTTCAGATTGAAACAA+AGG | 0.517112 | 1_1:+72690537 | Msa0042110:intron |
| TCAACCGGATATAGTAGAAA+AGG | 0.520659 | 1_1:+72692863 | Msa0042110:CDS |
| TGTTCAGATGATTGCTACAA+TGG | 0.521008 | 1_1:+72693056 | Msa0042110:intron |
| TACAGAACACGCGCCAATTG+AGG | 0.522614 | 1_1:+72690146 | Msa0042110:five_prime_UTR |
| CCTATTATTGATGGTGATGA+TGG | 0.523869 | 1_1:-72690239 | None:intergenic |
| GTTCAGATGATTGCTACAAT+GGG | 0.525033 | 1_1:+72693057 | Msa0042110:intron |
| CTCTCAGTGAAGATGTAGAA+AGG | 0.527326 | 1_1:+72695945 | Msa0042110:three_prime_UTR |
| CAGTGAAGATGTAGAAAGGA+TGG | 0.528452 | 1_1:+72695949 | Msa0042110:three_prime_UTR |
| CTGATAAAGATTTATGTCCA+TGG | 0.529374 | 1_1:-72691545 | None:intergenic |
| TGAGAGACATGAACCTGTAA+TGG | 0.530576 | 1_1:-72693282 | None:intergenic |
| ACAACAACAACGAGGTCCTC+CGG | 0.531545 | 1_1:+72690636 | Msa0042110:CDS |
| TACTATATCCGGTTGAGTGA+AGG | 0.532690 | 1_1:-72692856 | None:intergenic |
| ATCAACAAAGGCAATGATCT+GGG | 0.532780 | 1_1:-72695497 | None:intergenic |
| AGAGTTGGTTGTTGTTTGGG+GGG | 0.532934 | 1_1:-72690366 | None:intergenic |
| ACTTGAAGAAACTGATGATA+GGG | 0.535072 | 1_1:-72695670 | None:intergenic |
| GCAGTTCCTTGAGTGTGTGC+TGG | 0.538191 | 1_1:-72695562 | None:intergenic |
| TCCATAATCGTACTTGGAGA+AGG | 0.540057 | 1_1:-72695411 | None:intergenic |
| AATACACCAGAACAATCATT+GGG | 0.543527 | 1_1:+72691459 | Msa0042110:CDS |
| TTACCCTTGCTCTGAATATG+TGG | 0.550867 | 1_1:+72690416 | Msa0042110:CDS |
| ATGAGTTCATCACAGAGAGT+TGG | 0.551768 | 1_1:-72690381 | None:intergenic |
| GAGAGTTGGTTGTTGTTTGG+GGG | 0.553474 | 1_1:-72690367 | None:intergenic |
| TTTCAGATTGAAACAAAGGA+TGG | 0.556157 | 1_1:+72690541 | Msa0042110:intron |
| ATTACATTCATCTTAATGGA+AGG | 0.556575 | 1_1:-72695728 | None:intergenic |
| ACTTAGACGAGTATCACATA+AGG | 0.561077 | 1_1:-72693240 | None:intergenic |
| GGAGTGCACCACTGATATGA+AGG | 0.565592 | 1_1:+72695970 | Msa0042110:three_prime_UTR |
| CAAGACAGTAAATACTTCTG+TGG | 0.566209 | 1_1:-72695833 | None:intergenic |
| ACGCGCCAATTGAGGCGCGT+TGG | 0.567288 | 1_1:+72690154 | Msa0042110:five_prime_UTR |
| ATCATTGGGCTTCATCCTTG+CGG | 0.568286 | 1_1:+72691473 | Msa0042110:CDS |
| TAGATTCATTAAACATACAG+TGG | 0.569806 | 1_1:+72695762 | Msa0042110:three_prime_UTR |
| TAGTAACCATGAATAGGCCA+TGG | 0.571896 | 1_1:-72690669 | None:intergenic |
| TAAACCACCTCAGGTGTGGA+TGG | 0.574032 | 1_1:-72695584 | None:intergenic |
| CGTGGAACACGTTGGAGCCA+TGG | 0.574865 | 1_1:+72691528 | Msa0042110:CDS |
| CATTTCCGCAAGATCGTACA+GGG | 0.575973 | 1_1:-72692667 | None:intergenic |
| GATGAACTCATTCTTCCCGC+TGG | 0.577409 | 1_1:+72690393 | Msa0042110:CDS |
| AGTAATAACCTTCATATCAG+TGG | 0.583808 | 1_1:-72695978 | None:intergenic |
| ACTTGGAGAAGGTACCTTTG+CGG | 0.586271 | 1_1:-72695400 | None:intergenic |
| AATACCACATATTCAGAGCA+AGG | 0.587448 | 1_1:-72690420 | None:intergenic |
| AAGATAAACCACCTCAGGTG+TGG | 0.587694 | 1_1:-72695588 | None:intergenic |
| TCAGAGCAAGGGTAACCAGC+GGG | 0.589366 | 1_1:-72690408 | None:intergenic |
| ATTAGCCCTGTACGATCTTG+CGG | 0.594612 | 1_1:+72692662 | Msa0042110:CDS |
| GTATATATCACTAATTATTG+AGG | 0.599896 | 1_1:+72696046 | Msa0042110:three_prime_UTR |
| TTGCTTCAACGAGTCACGCG+TGG | 0.604439 | 1_1:+72694263 | Msa0042110:CDS |
| GATTGGTGAAACAGAATTTG+GGG | 0.607741 | 1_1:+72690261 | Msa0042110:five_prime_UTR |
| ACAATCAGGCAGGTGATGCA+TGG | 0.608662 | 1_1:+72691430 | Msa0042110:intron |
| AAGACAGTAAATACTTCTGT+GGG | 0.608764 | 1_1:-72695832 | None:intergenic |
| AACATCGCTCACTCCTTCGA+CGG | 0.610140 | 1_1:+72690333 | Msa0042110:CDS |
| ATCGCTCACTCCTTCGACGG+CGG | 0.610445 | 1_1:+72690336 | Msa0042110:CDS |
| TGATTTCCAGCACACACTCA+AGG | 0.617911 | 1_1:+72695556 | Msa0042110:CDS |
| ACCCTATACTAACTGTTAGG+TGG | 0.624266 | 1_1:-72690115 | None:intergenic |
| GGAACATACTCTGGAAAAGG+TGG | 0.634034 | 1_1:-72694335 | None:intergenic |
| ACTGCCATCCACACCTGAGG+TGG | 0.635259 | 1_1:+72695580 | Msa0042110:CDS |
| AAGGCAATGATCTGGGTATG+CGG | 0.641163 | 1_1:-72695490 | None:intergenic |
| CATCAAAACCTTGATCCGCA+AGG | 0.641366 | 1_1:-72691488 | None:intergenic |
| TTACAGACACAACATCAAAG+TGG | 0.645873 | 1_1:-72695792 | None:intergenic |
| AGACACAACATCAAAGTGGA+CGG | 0.649083 | 1_1:-72695788 | None:intergenic |
| TGTTCTCCAGTGATCCGCAA+AGG | 0.657082 | 1_1:+72695386 | Msa0042110:intron |
| ATACCACATATTCAGAGCAA+GGG | 0.659010 | 1_1:-72690419 | None:intergenic |
| ACCTAACAGTTAGTATAGGG+TGG | 0.661356 | 1_1:+72690117 | Msa0042110:five_prime_UTR |
| CCTTTGTTGATGGCTTATGG+GGG | 0.663104 | 1_1:+72695509 | Msa0042110:CDS |
| GGAGTGAGCGATGTTTCCGA+AGG | 0.667016 | 1_1:-72690325 | None:intergenic |
| GGAACTGCCATCCACACCTG+AGG | 0.674091 | 1_1:+72695577 | Msa0042110:CDS |
| ATTATTGATGGTGATGATGG+TGG | 0.675186 | 1_1:-72690236 | None:intergenic |
| TTCAGAGCAAGGGTAACCAG+CGG | 0.686767 | 1_1:-72690409 | None:intergenic |
| ATTGGTGAAACAGAATTTGG+GGG | 0.689686 | 1_1:+72690262 | Msa0042110:five_prime_UTR |
| CCATGGAGAAGCAGAACCGG+AGG | 0.690082 | 1_1:-72690652 | None:intergenic |
| TCAGTTTCTTCAAGTCAATG+GGG | 0.699933 | 1_1:+72695678 | Msa0042110:CDS |
| GAAATGTGCGTGGAACACGT+TGG | 0.739556 | 1_1:+72691520 | Msa0042110:CDS |
| GTTTGGGTAGGAAATGTGCG+TGG | 0.748523 | 1_1:+72691510 | Msa0042110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTACATCAATAAT+GGG | - | chr1_1:72693588-72693607 | None:intergenic | 10.0% |
| !!! | TATATTTTTTACATCAATAA+TGG | - | chr1_1:72693589-72693608 | None:intergenic | 10.0% |
| !! | ATTATTGATGTAAAAAATAT+AGG | + | chr1_1:72693588-72693607 | Msa0042110:intron | 10.0% |
| !!! | AGAAAAAAACAATTTTATTT+AGG | + | chr1_1:72693975-72693994 | Msa0042110:intron | 10.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr1_1:72690818-72690837 | Msa0042110:intron | 15.0% |
| !! | AATGAAAAGTTATTTATGTT+TGG | - | chr1_1:72691140-72691159 | None:intergenic | 15.0% |
| !!! | AATTAGTTTCAAACTTTAAA+AGG | - | chr1_1:72691364-72691383 | None:intergenic | 15.0% |
| !!! | TTCTTTTCAATTGTAAAATA+TGG | + | chr1_1:72691654-72691673 | Msa0042110:intron | 15.0% |
| !!! | TCTTTTCAATTGTAAAATAT+GGG | + | chr1_1:72691655-72691674 | Msa0042110:intron | 15.0% |
| !! | TAATGCTTGAAAATATTTAT+AGG | + | chr1_1:72691807-72691826 | Msa0042110:intron | 15.0% |
| !! | AATGCTTGAAAATATTTATA+GGG | + | chr1_1:72691808-72691827 | Msa0042110:intron | 15.0% |
| !! | ATAAATTAATATATGTGTAG+CGG | - | chr1_1:72693623-72693642 | None:intergenic | 15.0% |
| !! | ATGACATTAAATTAAATTAC+AGG | + | chr1_1:72694231-72694250 | Msa0042110:intron | 15.0% |
| !! | TCTATTTATAAATTGCTAAA+AGG | + | chr1_1:72695225-72695244 | Msa0042110:intron | 15.0% |
| !! | TTATATTACATTCATCTTAA+TGG | - | chr1_1:72695735-72695754 | None:intergenic | 15.0% |
| !! | TGTAATCTAATTTATACTCT+CGG | - | chr1_1:72690202-72690221 | None:intergenic | 20.0% |
| !! | AAGATATGAATTAGAAAGAA+GGG | - | chr1_1:72690478-72690497 | None:intergenic | 20.0% |
| !! | AAAGATATGAATTAGAAAGA+AGG | - | chr1_1:72690479-72690498 | None:intergenic | 20.0% |
| !! | CATAGTGTATTAGTATAATA+AGG | + | chr1_1:72690864-72690883 | Msa0042110:intron | 20.0% |
| !!! | TCAATTTAGAATCATTTATG+AGG | - | chr1_1:72691039-72691058 | None:intergenic | 20.0% |
| !! | TTAAAAATTCACTTTGTATG+CGG | + | chr1_1:72691264-72691283 | Msa0042110:intron | 20.0% |
| !!! | ACTATATTCTGTCATTTTTT+AGG | + | chr1_1:72691295-72691314 | Msa0042110:intron | 20.0% |
| !!! | CTATATTCTGTCATTTTTTA+GGG | + | chr1_1:72691296-72691315 | Msa0042110:intron | 20.0% |
| !!! | TATATTCTGTCATTTTTTAG+GGG | + | chr1_1:72691297-72691316 | Msa0042110:intron | 20.0% |
| !!! | AAATTCATTTTGCAATTTTG+TGG | - | chr1_1:72691731-72691750 | None:intergenic | 20.0% |
| !!! | TAATATTTGTACAACCATTT+TGG | + | chr1_1:72691834-72691853 | Msa0042110:intron | 20.0% |
| !!! | AATATTTGTACAACCATTTT+GGG | + | chr1_1:72691835-72691854 | Msa0042110:intron | 20.0% |
| !!! | TACAAGTTCTAAATGTATTA+AGG | + | chr1_1:72692040-72692059 | Msa0042110:intron | 20.0% |
| !!! | ACAAGTTCTAAATGTATTAA+GGG | + | chr1_1:72692041-72692060 | Msa0042110:intron | 20.0% |
| !!! | TATATTTTTGAGTTTTGACA+CGG | + | chr1_1:72692127-72692146 | Msa0042110:intron | 20.0% |
| !!! | TTTTTAGCTGTATATTGATA+AGG | + | chr1_1:72692429-72692448 | Msa0042110:intron | 20.0% |
| !!! | TTTTATTTTGGTAAAAACGA+GGG | - | chr1_1:72692577-72692596 | None:intergenic | 20.0% |
| !!! | ATTATGAGAAGAGTATTATT+TGG | - | chr1_1:72693418-72693437 | None:intergenic | 20.0% |
| !! | GATAGTAGAAGAATAAATAA+AGG | - | chr1_1:72693750-72693769 | None:intergenic | 20.0% |
| !!! | TGAGAAATTTTGATCAATTA+GGG | - | chr1_1:72693816-72693835 | None:intergenic | 20.0% |
| !!! | TTGAGAAATTTTGATCAATT+AGG | - | chr1_1:72693817-72693836 | None:intergenic | 20.0% |
| !!! | CTCATTTTAATCAATAACTT+AGG | + | chr1_1:72694126-72694145 | Msa0042110:intron | 20.0% |
| !! | ATTTAAAAGATATGCATTGT+CGG | - | chr1_1:72694870-72694889 | None:intergenic | 20.0% |
| !! | GCAAAGAAAATAGTATATAA+AGG | - | chr1_1:72696010-72696029 | None:intergenic | 20.0% |
| !! | GTATATATCACTAATTATTG+AGG | + | chr1_1:72696046-72696065 | Msa0042110:three_prime_UTR | 20.0% |
| ! | GTAATCTAATTTATACTCTC+GGG | - | chr1_1:72690201-72690220 | None:intergenic | 25.0% |
| ! | ATTAGAAAGAAGGGTAATAT+TGG | - | chr1_1:72690469-72690488 | None:intergenic | 25.0% |
| !!! | TTTCTGTTTTTCTTGCTAAT+TGG | + | chr1_1:72690496-72690515 | Msa0042110:intron | 25.0% |
| ! | TTACTTTCAGATTGAAACAA+AGG | + | chr1_1:72690537-72690556 | Msa0042110:intron | 25.0% |
| !!! | ATATCTTGCTATTTCAATGT+GGG | + | chr1_1:72690892-72690911 | Msa0042110:intron | 25.0% |
| ! | AAATGATTCTAAATTGAGCT+TGG | + | chr1_1:72691042-72691061 | Msa0042110:intron | 25.0% |
| ! | GGGTTTAACAATAAATTCAA+TGG | - | chr1_1:72691100-72691119 | None:intergenic | 25.0% |
| ! | TGGATATATTCATGTAAACA+GGG | - | chr1_1:72691120-72691139 | None:intergenic | 25.0% |
| ! | TTGGATATATTCATGTAAAC+AGG | - | chr1_1:72691121-72691140 | None:intergenic | 25.0% |
| ! | ATCTTTATCAGAGAAGAATA+AGG | + | chr1_1:72691557-72691576 | Msa0042110:CDS | 25.0% |
| ! | ATGTTATAGAACTCATTGAA+TGG | + | chr1_1:72691602-72691621 | Msa0042110:intron | 25.0% |
| !!! | ACCTTTTTTTCTCTTCTTTT+GGG | - | chr1_1:72691965-72691984 | None:intergenic | 25.0% |
| !!! | AACCTTTTTTTCTCTTCTTT+TGG | - | chr1_1:72691966-72691985 | None:intergenic | 25.0% |
| ! | CAAATAAGAAATGCTTCATT+CGG | + | chr1_1:72692359-72692378 | Msa0042110:intron | 25.0% |
| !!! | TTTATTTTGGTAAAAACGAG+GGG | - | chr1_1:72692576-72692595 | None:intergenic | 25.0% |
| !!! | GTTTTATTTTGGTAAAAACG+AGG | - | chr1_1:72692578-72692597 | None:intergenic | 25.0% |
| !!! | CATACTCATCAGTTTTATTT+TGG | - | chr1_1:72692589-72692608 | None:intergenic | 25.0% |
| ! | AACTCAAAGTTATTTGTAGT+TGG | + | chr1_1:72692714-72692733 | Msa0042110:CDS | 25.0% |
| ! | ACTCAAAGTTATTTGTAGTT+GGG | + | chr1_1:72692715-72692734 | Msa0042110:CDS | 25.0% |
| !!! | TGTTTCTAAAATGTAAGCTA+TGG | - | chr1_1:72692799-72692818 | None:intergenic | 25.0% |
| ! | ATATGATCCAAGTATGAAAT+TGG | - | chr1_1:72692912-72692931 | None:intergenic | 25.0% |
| ! | ATCAACATATGCAAAAGAAA+AGG | - | chr1_1:72693137-72693156 | None:intergenic | 25.0% |
| ! | TAAATAAAGGTCAGATACTA+TGG | - | chr1_1:72693737-72693756 | None:intergenic | 25.0% |
| !!! | AGAAATTTTGATCAATTAGG+GGG | - | chr1_1:72693814-72693833 | None:intergenic | 25.0% |
| !!! | GAGAAATTTTGATCAATTAG+GGG | - | chr1_1:72693815-72693834 | None:intergenic | 25.0% |
| ! | ATATGTAACTCTTGTATCTA+CGG | + | chr1_1:72693840-72693859 | Msa0042110:intron | 25.0% |
| !! | AAACATTTTTCTATCTCTCT+TGG | - | chr1_1:72693875-72693894 | None:intergenic | 25.0% |
| !!! | AACAATTTTATTTAGGACAC+CGG | + | chr1_1:72693982-72694001 | Msa0042110:intron | 25.0% |
| !! | GTTATTGATTAAAATGAGAG+AGG | - | chr1_1:72694124-72694143 | None:intergenic | 25.0% |
| ! | AAGAAACCAATTAAAGATGA+TGG | - | chr1_1:72694366-72694385 | None:intergenic | 25.0% |
| ! | ACATTATCAAACATGATCAA+AGG | - | chr1_1:72694529-72694548 | None:intergenic | 25.0% |
| ! | ACGATATAGAATAAACAAAC+TGG | - | chr1_1:72694689-72694708 | None:intergenic | 25.0% |
| ! | TGTAAAACTAATTACTAAGG+TGG | - | chr1_1:72694723-72694742 | None:intergenic | 25.0% |
| ! | CAGTGTAAAACTAATTACTA+AGG | - | chr1_1:72694726-72694745 | None:intergenic | 25.0% |
| ! | TCAAGATGCAGTTATTAAAA+TGG | + | chr1_1:72694791-72694810 | Msa0042110:intron | 25.0% |
| ! | CAAGATGCAGTTATTAAAAT+GGG | + | chr1_1:72694792-72694811 | Msa0042110:intron | 25.0% |
| ! | AAGATGCAGTTATTAAAATG+GGG | + | chr1_1:72694793-72694812 | Msa0042110:intron | 25.0% |
| ! | ATCCTTACAAATATGTCTTT+AGG | + | chr1_1:72694888-72694907 | Msa0042110:intron | 25.0% |
| ! | TTTCCTATAATGTCATTACT+AGG | + | chr1_1:72694932-72694951 | Msa0042110:intron | 25.0% |
| !!! | TTTTACTGTGTTATTTGCTT+TGG | + | chr1_1:72695271-72695290 | Msa0042110:intron | 25.0% |
| ! | TTATGGAAAGCTTAAAAATC+TGG | + | chr1_1:72695427-72695446 | Msa0042110:CDS | 25.0% |
| ! | ATTACATTCATCTTAATGGA+AGG | - | chr1_1:72695731-72695750 | None:intergenic | 25.0% |
| ! | TAGATTCATTAAACATACAG+TGG | + | chr1_1:72695762-72695781 | Msa0042110:three_prime_UTR | 25.0% |
| ! | TTGAAGTTAAAACCATTGTT+TGG | + | chr1_1:72695876-72695895 | Msa0042110:three_prime_UTR | 25.0% |
| !!! | GAATCTATTTTTCCAAACAA+TGG | - | chr1_1:72695891-72695910 | None:intergenic | 25.0% |
| ATCACCATCAATAATAGGAT+TGG | + | chr1_1:72690244-72690263 | Msa0042110:five_prime_UTR | 30.0% | |
| TTCACCAATCCTATTATTGA+TGG | - | chr1_1:72690251-72690270 | None:intergenic | 30.0% | |
| TTTCAGATTGAAACAAAGGA+TGG | + | chr1_1:72690541-72690560 | Msa0042110:intron | 30.0% | |
| AGTAAGTAGTAACCATGAAT+AGG | - | chr1_1:72690678-72690697 | None:intergenic | 30.0% | |
| !! | GATATCTTGCTATTTCAATG+TGG | + | chr1_1:72690891-72690910 | Msa0042110:intron | 30.0% |
| TAGAACCAAACATACACTAA+AGG | - | chr1_1:72690944-72690963 | None:intergenic | 30.0% | |
| !!! | TGTATGTTTGGTTCTACTTT+TGG | + | chr1_1:72690948-72690967 | Msa0042110:intron | 30.0% |
| !! | GAATTTGTTATTGACCTGTT+TGG | + | chr1_1:72690999-72691018 | Msa0042110:intron | 30.0% |
| CAAAACTCTGCAAATATTAC+TGG | - | chr1_1:72691225-72691244 | None:intergenic | 30.0% | |
| ! | CAGTAATATTTGCAGAGTTT+TGG | + | chr1_1:72691223-72691242 | Msa0042110:intron | 30.0% |
| ! | TTATGCCATTTGATACAATC+AGG | + | chr1_1:72691416-72691435 | Msa0042110:intron | 30.0% |
| AAATACACCAGAACAATCAT+TGG | + | chr1_1:72691458-72691477 | Msa0042110:CDS | 30.0% | |
| AATACACCAGAACAATCATT+GGG | + | chr1_1:72691459-72691478 | Msa0042110:CDS | 30.0% | |
| CTGATAAAGATTTATGTCCA+TGG | - | chr1_1:72691548-72691567 | None:intergenic | 30.0% | |
| CAATGAGTTCTATAACATGA+AGG | - | chr1_1:72691600-72691619 | None:intergenic | 30.0% | |
| ! | TACTTTTCTATACATAGCCA+AGG | + | chr1_1:72691700-72691719 | Msa0042110:intron | 30.0% |
| ! | ACTTTTCTATACATAGCCAA+GGG | + | chr1_1:72691701-72691720 | Msa0042110:intron | 30.0% |
| TCAACAACTAAACTTTCATG+TGG | + | chr1_1:72691784-72691803 | Msa0042110:intron | 30.0% | |
| AAACAATAGAGAGAGAAAGA+GGG | - | chr1_1:72691938-72691957 | None:intergenic | 30.0% | |
| AAAACAATAGAGAGAGAAAG+AGG | - | chr1_1:72691939-72691958 | None:intergenic | 30.0% | |
| TCCCAAAAGAAGAGAAAAAA+AGG | + | chr1_1:72691961-72691980 | Msa0042110:intron | 30.0% | |
| !! | GCTATTTTGTGACAACTTTT+GGG | - | chr1_1:72691991-72692010 | None:intergenic | 30.0% |
| !! | AGCTATTTTGTGACAACTTT+TGG | - | chr1_1:72691992-72692011 | None:intergenic | 30.0% |
| ACCTCATTTCTATTAGCAAA+TGG | - | chr1_1:72692076-72692095 | None:intergenic | 30.0% | |
| !! | AACTTGTTGAAAACATTCAG+AGG | - | chr1_1:72692155-72692174 | None:intergenic | 30.0% |
| !! | TTTTCAGCACTAGTTTGAAA+AGG | + | chr1_1:72692227-72692246 | Msa0042110:intron | 30.0% |
| CAAAGAAGTAATGCTTCATT+CGG | + | chr1_1:72692264-72692283 | Msa0042110:intron | 30.0% | |
| AGTACTTCTTATAAGATCAG+AGG | - | chr1_1:72692306-72692325 | None:intergenic | 30.0% | |
| TACTTATGATGATCTCGAAA+AGG | + | chr1_1:72692322-72692341 | Msa0042110:intron | 30.0% | |
| ACTTATGATGATCTCGAAAA+GGG | + | chr1_1:72692323-72692342 | Msa0042110:intron | 30.0% | |
| ATTATTTGATCTTGAGCAGT+TGG | + | chr1_1:72692394-72692413 | Msa0042110:intron | 30.0% | |
| ATGTGAAAAGGATGATTTAC+AGG | - | chr1_1:72692762-72692781 | None:intergenic | 30.0% | |
| AGAAACATCTTATCCATCTT+AGG | + | chr1_1:72692812-72692831 | Msa0042110:intron | 30.0% | |
| GAAACATCTTATCCATCTTA+GGG | + | chr1_1:72692813-72692832 | Msa0042110:intron | 30.0% | |
| AAACATCTTATCCATCTTAG+GGG | + | chr1_1:72692814-72692833 | Msa0042110:intron | 30.0% | |
| ! | TCAACCTTTTCTACTATATC+CGG | - | chr1_1:72692870-72692889 | None:intergenic | 30.0% |
| ! | TTTTCCATTCTTAGTACCAA+AGG | - | chr1_1:72692942-72692961 | None:intergenic | 30.0% |
| TTCATCAGCTGAATTTCAAA+AGG | + | chr1_1:72693082-72693101 | Msa0042110:CDS | 30.0% | |
| CAAAAGAAAAGGAGAAAAAC+AGG | - | chr1_1:72693126-72693145 | None:intergenic | 30.0% | |
| ! | TTAACTCATTTTCAGCGATT+GGG | + | chr1_1:72693199-72693218 | Msa0042110:intron | 30.0% |
| ACATAAGGAAATCAAGAGAT+TGG | - | chr1_1:72693228-72693247 | None:intergenic | 30.0% | |
| TATGTATGTCTGTGTTTAGA+AGG | + | chr1_1:72693316-72693335 | Msa0042110:intron | 30.0% | |
| !! | GAGAAGAGTATTATTTGGAT+TGG | - | chr1_1:72693413-72693432 | None:intergenic | 30.0% |
| ! | AAGGTTTTTGAATCATGCTT+AGG | - | chr1_1:72694101-72694120 | None:intergenic | 30.0% |
| TTGATTAAAATGAGAGAGGA+AGG | - | chr1_1:72694120-72694139 | None:intergenic | 30.0% | |
| ! | CAATAACTTAGGAATCCTTT+TGG | + | chr1_1:72694137-72694156 | Msa0042110:intron | 30.0% |
| !! | CAATTAAAGATGATGGAACA+TGG | - | chr1_1:72694359-72694378 | None:intergenic | 30.0% |
| CATGTTCCATCATCTTTAAT+TGG | + | chr1_1:72694357-72694376 | Msa0042110:intron | 30.0% | |
| GATCAAAGGTAAATTTGTGA+TGG | - | chr1_1:72694515-72694534 | None:intergenic | 30.0% | |
| !! | GATATGAAGCAGCTTTAAAT+TGG | + | chr1_1:72694563-72694582 | Msa0042110:intron | 30.0% |
| !! | AGCTTTAAATTGGACTTTGT+AGG | + | chr1_1:72694573-72694592 | Msa0042110:intron | 30.0% |
| ! | GCTTTAAATTGGACTTTGTA+GGG | + | chr1_1:72694574-72694593 | Msa0042110:intron | 30.0% |
| GAATAAACAAACTGGTACTA+AGG | - | chr1_1:72694681-72694700 | None:intergenic | 30.0% | |
| TAACTGCATCTTGAAATTGA+CGG | - | chr1_1:72694785-72694804 | None:intergenic | 30.0% | |
| CTCCTAAAGACATATTTGTA+AGG | - | chr1_1:72694893-72694912 | None:intergenic | 30.0% | |
| ! | TACAAATATGTCTTTAGGAG+AGG | + | chr1_1:72694893-72694912 | Msa0042110:intron | 30.0% |
| GTACCTAGTAATGACATTAT+AGG | - | chr1_1:72694938-72694957 | None:intergenic | 30.0% | |
| AAGAGAAAAAGAAACTACAG+CGG | - | chr1_1:72694991-72695010 | None:intergenic | 30.0% | |
| TAGCAATTGCCATTAATTAC+TGG | + | chr1_1:72695112-72695131 | Msa0042110:intron | 30.0% | |
| CATCATCAACCAGTAATTAA+TGG | - | chr1_1:72695124-72695143 | None:intergenic | 30.0% | |
| !! | TTGATGATGAATCAGCATAT+GGG | + | chr1_1:72695135-72695154 | Msa0042110:intron | 30.0% |
| ATAGAGTTTAAAAGACAGTC+TGG | - | chr1_1:72695210-72695229 | None:intergenic | 30.0% | |
| ! | CTAAAAGGACATTTGAAGTT+TGG | + | chr1_1:72695240-72695259 | Msa0042110:intron | 30.0% |
| ATCATACACAAAATGAAAGC+TGG | - | chr1_1:72695301-72695320 | None:intergenic | 30.0% | |
| ! | AGCTTTCATTTTGTGTATGA+TGG | + | chr1_1:72695300-72695319 | Msa0042110:intron | 30.0% |
| !! | CTTGCTATTATTCTTGTCAA+TGG | + | chr1_1:72695341-72695360 | Msa0042110:intron | 30.0% |
| CTTAAAAATCTGGTAGAGTA+TGG | + | chr1_1:72695437-72695456 | Msa0042110:CDS | 30.0% | |
| GTGGTTTATCTTGAAAACTA+TGG | + | chr1_1:72695599-72695618 | Msa0042110:CDS | 30.0% | |
| ACTTGAAGAAACTGATGATA+GGG | - | chr1_1:72695673-72695692 | None:intergenic | 30.0% | |
| ATCAGTTTCTTCAAGTCAAT+GGG | + | chr1_1:72695677-72695696 | Msa0042110:CDS | 30.0% | |
| AAGACAGTAAATACTTCTGT+GGG | - | chr1_1:72695835-72695854 | None:intergenic | 30.0% | |
| !! | TTGGTTTGCTACTAATTGAT+TGG | + | chr1_1:72695853-72695872 | Msa0042110:three_prime_UTR | 30.0% |
| TTCCAAACCATTGAATGATA+AGG | + | chr1_1:72695908-72695927 | Msa0042110:three_prime_UTR | 30.0% | |
| TCCAAACCATTGAATGATAA+GGG | + | chr1_1:72695909-72695928 | Msa0042110:three_prime_UTR | 30.0% | |
| ! | CTTTTTCCCTTATCATTCAA+TGG | - | chr1_1:72695918-72695937 | None:intergenic | 30.0% |
| AGTAATAACCTTCATATCAG+TGG | - | chr1_1:72695981-72696000 | None:intergenic | 30.0% | |
| ATATACTCACAGTATGGTAA+TGG | - | chr1_1:72696032-72696051 | None:intergenic | 30.0% | |
| AGTGATATATACTCACAGTA+TGG | - | chr1_1:72696038-72696057 | None:intergenic | 30.0% | |
| AACCACCTAACAGTTAGTAT+AGG | + | chr1_1:72690113-72690132 | Msa0042110:five_prime_UTR | 35.0% | |
| ACCACCTAACAGTTAGTATA+GGG | + | chr1_1:72690114-72690133 | Msa0042110:five_prime_UTR | 35.0% | |
| !! | ATTATTGATGGTGATGATGG+TGG | - | chr1_1:72690239-72690258 | None:intergenic | 35.0% |
| !! | CCTATTATTGATGGTGATGA+TGG | - | chr1_1:72690242-72690261 | None:intergenic | 35.0% |
| CCATCATCACCATCAATAAT+AGG | + | chr1_1:72690239-72690258 | Msa0042110:five_prime_UTR | 35.0% | |
| ! | AGGATTGGTGAAACAGAATT+TGG | + | chr1_1:72690259-72690278 | Msa0042110:five_prime_UTR | 35.0% |
| ! | GGATTGGTGAAACAGAATTT+GGG | + | chr1_1:72690260-72690279 | Msa0042110:five_prime_UTR | 35.0% |
| GATTGGTGAAACAGAATTTG+GGG | + | chr1_1:72690261-72690280 | Msa0042110:five_prime_UTR | 35.0% | |
| ATTGGTGAAACAGAATTTGG+GGG | + | chr1_1:72690262-72690281 | Msa0042110:five_prime_UTR | 35.0% | |
| ATTGCCATACTCTTATCCTT+CGG | + | chr1_1:72690309-72690328 | Msa0042110:CDS | 35.0% | |
| ATACCACATATTCAGAGCAA+GGG | - | chr1_1:72690422-72690441 | None:intergenic | 35.0% | |
| AATACCACATATTCAGAGCA+AGG | - | chr1_1:72690423-72690442 | None:intergenic | 35.0% | |
| ACAAAGGATGGTTTCTTGTT+AGG | + | chr1_1:72690553-72690572 | Msa0042110:CDS | 35.0% | |
| AGCTTCCTTTAGTGTATGTT+TGG | + | chr1_1:72690936-72690955 | Msa0042110:intron | 35.0% | |
| !!! | ATGTTTGGTTCTACTTTTGG+AGG | + | chr1_1:72690951-72690970 | Msa0042110:intron | 35.0% |
| !!! | TGTTTGGTTCTACTTTTGGA+GGG | + | chr1_1:72690952-72690971 | Msa0042110:intron | 35.0% |
| ! | TACATAATTGATTCTCGAGG+TGG | + | chr1_1:72690975-72690994 | Msa0042110:intron | 35.0% |
| ATTGACCTGTTTGGATGTAT+TGG | + | chr1_1:72691008-72691027 | Msa0042110:intron | 35.0% | |
| CAAAACCAATACATCCAAAC+AGG | - | chr1_1:72691016-72691035 | None:intergenic | 35.0% | |
| !! | GTTTTGGACAGTGTTTGAAT+TGG | + | chr1_1:72691239-72691258 | Msa0042110:intron | 35.0% |
| !! | GGATCAAGGTTTTGATGTTT+GGG | + | chr1_1:72691494-72691513 | Msa0042110:CDS | 35.0% |
| TCTCAAAAGTTGTCCCAAAA+TGG | - | chr1_1:72691851-72691870 | None:intergenic | 35.0% | |
| AACAATAGAGAGAGAAAGAG+GGG | - | chr1_1:72691937-72691956 | None:intergenic | 35.0% | |
| ! | GCCATTTGCTAATAGAAATG+AGG | + | chr1_1:72692072-72692091 | Msa0042110:intron | 35.0% |
| TGACTAGAATTCTTCGACAA+TGG | - | chr1_1:72692484-72692503 | None:intergenic | 35.0% | |
| ! | TTGTCCTTTTGTAGCACTTT+TGG | + | chr1_1:72692622-72692641 | Msa0042110:intron | 35.0% |
| ! | TGTCCTTTTGTAGCACTTTT+GGG | + | chr1_1:72692623-72692642 | Msa0042110:intron | 35.0% |
| !! | AATCCCAAAAGTGCTACAAA+AGG | - | chr1_1:72692629-72692648 | None:intergenic | 35.0% |
| !!! | TTTTGTAGCACTTTTGGGAT+TGG | + | chr1_1:72692628-72692647 | Msa0042110:intron | 35.0% |
| AATGCTGGTAGAATGTGAAA+AGG | - | chr1_1:72692774-72692793 | None:intergenic | 35.0% | |
| ATGTAAGCTATGGAAAATGC+TGG | - | chr1_1:72692789-72692808 | None:intergenic | 35.0% | |
| GAAATAATTGTCCCCTAAGA+TGG | - | chr1_1:72692828-72692847 | None:intergenic | 35.0% | |
| TCAACCGGATATAGTAGAAA+AGG | + | chr1_1:72692863-72692882 | Msa0042110:CDS | 35.0% | |
| TCTGTCTCCAATTTCATACT+TGG | + | chr1_1:72692902-72692921 | Msa0042110:CDS | 35.0% | |
| TGTTCAGATGATTGCTACAA+TGG | + | chr1_1:72693056-72693075 | Msa0042110:intron | 35.0% | |
| GTTCAGATGATTGCTACAAT+GGG | + | chr1_1:72693057-72693076 | Msa0042110:intron | 35.0% | |
| AAACAGGACAGAATGAAAAC+TGG | - | chr1_1:72693110-72693129 | None:intergenic | 35.0% | |
| TTTGCTAAGCTGGAAATACA+TGG | - | chr1_1:72693160-72693179 | None:intergenic | 35.0% | |
| ! | TCCAGCTTAGCAAATTTTCA+CGG | + | chr1_1:72693166-72693185 | Msa0042110:intron | 35.0% |
| ! | CTTAACTCATTTTCAGCGAT+TGG | + | chr1_1:72693198-72693217 | Msa0042110:intron | 35.0% |
| ACTTAGACGAGTATCACATA+AGG | - | chr1_1:72693243-72693262 | None:intergenic | 35.0% | |
| TGGCATTCATGAAAGACAAA+AGG | - | chr1_1:72693442-72693461 | None:intergenic | 35.0% | |
| TAATATATGTGTAGCGGTGA+TGG | - | chr1_1:72693617-72693636 | None:intergenic | 35.0% | |
| !! | TTCAAGTTTTTGGAGGATGA+TGG | - | chr1_1:72694315-72694334 | None:intergenic | 35.0% |
| !! | GAAAAGGTGGTTCAAGTTTT+TGG | - | chr1_1:72694325-72694344 | None:intergenic | 35.0% |
| ! | TGACTTTTCTGACTATTCAC+TGG | + | chr1_1:72694404-72694423 | Msa0042110:intron | 35.0% |
| TAAATTGGACTTTGTAGGGA+CGG | + | chr1_1:72694578-72694597 | Msa0042110:intron | 35.0% | |
| GGGAAGTAATAATGTTCAGT+GGG | + | chr1_1:72694608-72694627 | Msa0042110:intron | 35.0% | |
| GAAAAATAGAGACCTCTCAT+TGG | - | chr1_1:72694753-72694772 | None:intergenic | 35.0% | |
| TTGAAATTGACGGAATGACA+TGG | - | chr1_1:72694775-72694794 | None:intergenic | 35.0% | |
| ! | AAATATGTCTTTAGGAGAGG+AGG | + | chr1_1:72694896-72694915 | Msa0042110:intron | 35.0% |
| ! | GCTGTAGTTTCTTTTTCTCT+TGG | + | chr1_1:72694990-72695009 | Msa0042110:intron | 35.0% |
| !! | GTTGATGATGAATCAGCATA+TGG | + | chr1_1:72695134-72695153 | Msa0042110:intron | 35.0% |
| ACAGTCTGGTGGAAATAATT+AGG | - | chr1_1:72695196-72695215 | None:intergenic | 35.0% | |
| AAGCTTTCCATAATCGTACT+TGG | - | chr1_1:72695420-72695439 | None:intergenic | 35.0% | |
| ATCAACAAAGGCAATGATCT+GGG | - | chr1_1:72695500-72695519 | None:intergenic | 35.0% | |
| !! | TTTTCAAGATAAACCACCTC+AGG | - | chr1_1:72695596-72695615 | None:intergenic | 35.0% |
| GACTTGAAGAAACTGATGAT+AGG | - | chr1_1:72695674-72695693 | None:intergenic | 35.0% | |
| CATCAGTTTCTTCAAGTCAA+TGG | + | chr1_1:72695676-72695695 | Msa0042110:CDS | 35.0% | |
| TCAGTTTCTTCAAGTCAATG+GGG | + | chr1_1:72695678-72695697 | Msa0042110:CDS | 35.0% | |
| TTACAGACACAACATCAAAG+TGG | - | chr1_1:72695795-72695814 | None:intergenic | 35.0% | |
| CAAGACAGTAAATACTTCTG+TGG | - | chr1_1:72695836-72695855 | None:intergenic | 35.0% | |
| !! | CACAGAAGTATTTACTGTCT+TGG | + | chr1_1:72695834-72695853 | Msa0042110:three_prime_UTR | 35.0% |
| TCCCTTATCATTCAATGGTT+TGG | - | chr1_1:72695913-72695932 | None:intergenic | 35.0% | |
| ACCCTATACTAACTGTTAGG+TGG | - | chr1_1:72690118-72690137 | None:intergenic | 40.0% | |
| ACCTAACAGTTAGTATAGGG+TGG | + | chr1_1:72690117-72690136 | Msa0042110:five_prime_UTR | 40.0% | |
| ACCACCCTATACTAACTGTT+AGG | - | chr1_1:72690121-72690140 | None:intergenic | 40.0% | |
| ATTTATACTCTCGGGTTCGA+TGG | - | chr1_1:72690193-72690212 | None:intergenic | 40.0% | |
| TGAAACAGAATTTGGGGGAT+GGG | + | chr1_1:72690267-72690286 | Msa0042110:exon | 40.0% | |
| GTTTCCGAAGGATAAGAGTA+TGG | - | chr1_1:72690316-72690335 | None:intergenic | 40.0% | |
| !! | AGAGAGTTGGTTGTTGTTTG+GGG | - | chr1_1:72690371-72690390 | None:intergenic | 40.0% |
| !! | CAGAGAGTTGGTTGTTGTTT+GGG | - | chr1_1:72690372-72690391 | None:intergenic | 40.0% |
| ! | ACAGAGAGTTGGTTGTTGTT+TGG | - | chr1_1:72690373-72690392 | None:intergenic | 40.0% |
| ATGAGTTCATCACAGAGAGT+TGG | - | chr1_1:72690384-72690403 | None:intergenic | 40.0% | |
| ! | TTACCCTTGCTCTGAATATG+TGG | + | chr1_1:72690416-72690435 | Msa0042110:CDS | 40.0% |
| GCTCAAAAACAACAACAACG+AGG | + | chr1_1:72690628-72690647 | Msa0042110:CDS | 40.0% | |
| TAGTAACCATGAATAGGCCA+TGG | - | chr1_1:72690672-72690691 | None:intergenic | 40.0% | |
| ! | ACGTCTTCTATCAGAAGTGT+CGG | - | chr1_1:72690755-72690774 | None:intergenic | 40.0% |
| ATGAAGCACATACACACACA+TGG | - | chr1_1:72690847-72690866 | None:intergenic | 40.0% | |
| ! | GGGTACATAATTGATTCTCG+AGG | + | chr1_1:72690972-72690991 | Msa0042110:intron | 40.0% |
| !!! | CTGTCATTTTTTAGGGGAAG+TGG | + | chr1_1:72691303-72691322 | Msa0042110:intron | 40.0% |
| ACCTGCCTGATTGTATCAAA+TGG | - | chr1_1:72691424-72691443 | None:intergenic | 40.0% | |
| ATGAAGCCCAATGATTGTTC+TGG | - | chr1_1:72691468-72691487 | None:intergenic | 40.0% | |
| !! | CGGATCAAGGTTTTGATGTT+TGG | + | chr1_1:72691493-72691512 | Msa0042110:CDS | 40.0% |
| !! | CAAGGTTTTGATGTTTGGGT+AGG | + | chr1_1:72691498-72691517 | Msa0042110:CDS | 40.0% |
| ! | ATACGATGTGACTTGTGCTT+TGG | + | chr1_1:72692550-72692569 | Msa0042110:intron | 40.0% |
| ATTTGTAGTTGGGCATTCAC+AGG | + | chr1_1:72692725-72692744 | Msa0042110:CDS | 40.0% | |
| TACTATATCCGGTTGAGTGA+AGG | - | chr1_1:72692859-72692878 | None:intergenic | 40.0% | |
| GGATCATATTAGTGCACCTT+TGG | + | chr1_1:72692923-72692942 | Msa0042110:CDS | 40.0% | |
| TGCACCTTTGGTACTAAGAA+TGG | + | chr1_1:72692935-72692954 | Msa0042110:CDS | 40.0% | |
| GGAAAAGATGCACATTGATC+AGG | + | chr1_1:72692956-72692975 | Msa0042110:CDS | 40.0% | |
| ! | CCAGCTTAGCAAATTTTCAC+GGG | + | chr1_1:72693167-72693186 | Msa0042110:intron | 40.0% |
| ! | CAGCTTAGCAAATTTTCACG+GGG | + | chr1_1:72693168-72693187 | Msa0042110:intron | 40.0% |
| TGAGAGACATGAACCTGTAA+TGG | - | chr1_1:72693285-72693304 | None:intergenic | 40.0% | |
| TGCCATTGCAATTACTTTGC+TGG | + | chr1_1:72693457-72693476 | Msa0042110:intron | 40.0% | |
| AGCCAGCAAAGTAATTGCAA+TGG | - | chr1_1:72693462-72693481 | None:intergenic | 40.0% | |
| TTTGTCTGAGTTGTCTGACA+TGG | + | chr1_1:72693901-72693920 | Msa0042110:intron | 40.0% | |
| ATGGCTCGTATGAGTGTTAT+AGG | + | chr1_1:72693920-72693939 | Msa0042110:intron | 40.0% | |
| CGTATGAGTGTTATAGGTGT+CGG | + | chr1_1:72693926-72693945 | Msa0042110:intron | 40.0% | |
| CTTAGGCAAGTTATGAAGCA+CGG | - | chr1_1:72694084-72694103 | None:intergenic | 40.0% | |
| ATACACGCAGAATGACCAAA+AGG | - | chr1_1:72694155-72694174 | None:intergenic | 40.0% | |
| !!! | TTTTTGGAGGATGATGGATG+AGG | - | chr1_1:72694309-72694328 | None:intergenic | 40.0% |
| !! | AAGGTGGTTCAAGTTTTTGG+AGG | - | chr1_1:72694322-72694341 | None:intergenic | 40.0% |
| ! | CATGGAACATACTCTGGAAA+AGG | - | chr1_1:72694341-72694360 | None:intergenic | 40.0% |
| ATGGAACATGGAACATACTC+TGG | - | chr1_1:72694347-72694366 | None:intergenic | 40.0% | |
| AAATTGGACTTTGTAGGGAC+GGG | + | chr1_1:72694579-72694598 | Msa0042110:intron | 40.0% | |
| GGGGAAGTAATAATGTTCAG+TGG | + | chr1_1:72694607-72694626 | Msa0042110:intron | 40.0% | |
| TTACACTGACATCCAATGAG+AGG | + | chr1_1:72694738-72694757 | Msa0042110:intron | 40.0% | |
| TGACATGCTTTATCTTGCCA+AGG | + | chr1_1:72695059-72695078 | Msa0042110:intron | 40.0% | |
| CTTCGTACAAATATGCTCCT+TGG | - | chr1_1:72695079-72695098 | None:intergenic | 40.0% | |
| ATGATGAATCAGCATATGGG+TGG | + | chr1_1:72695138-72695157 | Msa0042110:intron | 40.0% | |
| GAGTTTAAAAGACAGTCTGG+TGG | - | chr1_1:72695207-72695226 | None:intergenic | 40.0% | |
| ACCTTCTCCAAGTACGATTA+TGG | + | chr1_1:72695410-72695429 | Msa0042110:CDS | 40.0% | |
| TCCATAATCGTACTTGGAGA+AGG | - | chr1_1:72695414-72695433 | None:intergenic | 40.0% | |
| ! | ATGCGGCTAAGGTCAAATTT+TGG | - | chr1_1:72695476-72695495 | None:intergenic | 40.0% |
| CATCAACAAAGGCAATGATC+TGG | - | chr1_1:72695501-72695520 | None:intergenic | 40.0% | |
| CAGATCATTGCCTTTGTTGA+TGG | + | chr1_1:72695499-72695518 | Msa0042110:CDS | 40.0% | |
| !! | TTGCCTTTGTTGATGGCTTA+TGG | + | chr1_1:72695506-72695525 | Msa0042110:CDS | 40.0% |
| !! | TGCCTTTGTTGATGGCTTAT+GGG | + | chr1_1:72695507-72695526 | Msa0042110:CDS | 40.0% |
| AGACACAACATCAAAGTGGA+CGG | - | chr1_1:72695791-72695810 | None:intergenic | 40.0% | |
| CTCTCAGTGAAGATGTAGAA+AGG | + | chr1_1:72695945-72695964 | Msa0042110:three_prime_UTR | 40.0% | |
| CAGTGAAGATGTAGAAAGGA+TGG | + | chr1_1:72695949-72695968 | Msa0042110:three_prime_UTR | 40.0% | |
| GTGAAACAGAATTTGGGGGA+TGG | + | chr1_1:72690266-72690285 | Msa0042110:exon | 45.0% | |
| GAAACAGAATTTGGGGGATG+GGG | + | chr1_1:72690268-72690287 | Msa0042110:exon | 45.0% | |
| !! | AGAGTTGGTTGTTGTTTGGG+GGG | - | chr1_1:72690369-72690388 | None:intergenic | 45.0% |
| !! | GAGAGTTGGTTGTTGTTTGG+GGG | - | chr1_1:72690370-72690389 | None:intergenic | 45.0% |
| CTTCTGATAGAAGACGTGTC+TGG | + | chr1_1:72690758-72690777 | Msa0042110:intron | 45.0% | |
| GCCATTTGATACAATCAGGC+AGG | + | chr1_1:72691420-72691439 | Msa0042110:intron | 45.0% | |
| ATCATTGGGCTTCATCCTTG+CGG | + | chr1_1:72691473-72691492 | Msa0042110:CDS | 45.0% | |
| CATCAAAACCTTGATCCGCA+AGG | - | chr1_1:72691491-72691510 | None:intergenic | 45.0% | |
| ! | GCAATTTTGTGGAACACCCT+TGG | - | chr1_1:72691720-72691739 | None:intergenic | 45.0% |
| CTCGAAAAGGGAGAACAGAA+TGG | + | chr1_1:72692335-72692354 | Msa0042110:intron | 45.0% | |
| ATTAGCCCTGTACGATCTTG+CGG | + | chr1_1:72692662-72692681 | Msa0042110:CDS | 45.0% | |
| CATTTCCGCAAGATCGTACA+GGG | - | chr1_1:72692670-72692689 | None:intergenic | 45.0% | |
| TCATTTCCGCAAGATCGTAC+AGG | - | chr1_1:72692671-72692690 | None:intergenic | 45.0% | |
| ! | TTTTGCTGCCTTCACTCAAC+CGG | + | chr1_1:72692848-72692867 | Msa0042110:CDS | 45.0% |
| !! | CCCGTGAAAATTTGCTAAGC+TGG | - | chr1_1:72693170-72693189 | None:intergenic | 45.0% |
| GACATGCTGTCATCCATTAC+AGG | + | chr1_1:72693269-72693288 | Msa0042110:CDS | 45.0% | |
| CGCACAATTCAGATCAGAGA+GGG | - | chr1_1:72693559-72693578 | None:intergenic | 45.0% | |
| !! | GTGTTATAGGTGTCGGATAC+CGG | + | chr1_1:72693933-72693952 | Msa0042110:intron | 45.0% |
| TTACTTCGACACTCCTAGAC+CGG | - | chr1_1:72693955-72693974 | None:intergenic | 45.0% | |
| ! | GGAACATACTCTGGAAAAGG+TGG | - | chr1_1:72694338-72694357 | None:intergenic | 45.0% |
| !! | GCGCTGTTTTCAATTAGCAG+TGG | + | chr1_1:72694426-72694445 | Msa0042110:intron | 45.0% |
| AATTGGACTTTGTAGGGACG+GGG | + | chr1_1:72694580-72694599 | Msa0042110:intron | 45.0% | |
| AATCAGCATATGGGTGGAAG+TGG | + | chr1_1:72695144-72695163 | Msa0042110:intron | 45.0% | |
| GGATCACTGGAGAACATATG+AGG | - | chr1_1:72695382-72695401 | None:intergenic | 45.0% | |
| !! | ACTTGGAGAAGGTACCTTTG+CGG | - | chr1_1:72695403-72695422 | None:intergenic | 45.0% |
| ! | CGGCTAAGGTCAAATTTTGG+TGG | - | chr1_1:72695473-72695492 | None:intergenic | 45.0% |
| AAGGCAATGATCTGGGTATG+CGG | - | chr1_1:72695493-72695512 | None:intergenic | 45.0% | |
| !! | GCCTTTGTTGATGGCTTATG+GGG | + | chr1_1:72695508-72695527 | Msa0042110:CDS | 45.0% |
| !! | CCTTTGTTGATGGCTTATGG+GGG | + | chr1_1:72695509-72695528 | Msa0042110:CDS | 45.0% |
| TGATTTCCAGCACACACTCA+AGG | + | chr1_1:72695556-72695575 | Msa0042110:CDS | 45.0% | |
| AAGATAAACCACCTCAGGTG+TGG | - | chr1_1:72695591-72695610 | None:intergenic | 45.0% | |
| !! | TATATTAATTTATTTATAGA+CGG | + | chr1_1:72693630-72693649 | Msa0042110:intron | 5.0% |
| TACAGAACACGCGCCAATTG+AGG | + | chr1_1:72690146-72690165 | Msa0042110:five_prime_UTR | 50.0% | |
| AACATCGCTCACTCCTTCGA+CGG | + | chr1_1:72690333-72690352 | Msa0042110:CDS | 50.0% | |
| GATGAACTCATTCTTCCCGC+TGG | + | chr1_1:72690393-72690412 | Msa0042110:CDS | 50.0% | |
| TTCAGAGCAAGGGTAACCAG+CGG | - | chr1_1:72690412-72690431 | None:intergenic | 50.0% | |
| ACAACAACAACGAGGTCCTC+CGG | + | chr1_1:72690636-72690655 | Msa0042110:CDS | 50.0% | |
| GCTTCTCCATGGCCTATTCA+TGG | + | chr1_1:72690663-72690682 | Msa0042110:CDS | 50.0% | |
| ACAATCAGGCAGGTGATGCA+TGG | + | chr1_1:72691430-72691449 | Msa0042110:intron | 50.0% | |
| GTTTGGGTAGGAAATGTGCG+TGG | + | chr1_1:72691510-72691529 | Msa0042110:CDS | 50.0% | |
| GAAATGTGCGTGGAACACGT+TGG | + | chr1_1:72691520-72691539 | Msa0042110:CDS | 50.0% | |
| !!! | AGCACTTTTGGGATTGGAGC+TGG | + | chr1_1:72692634-72692653 | Msa0042110:intron | 50.0% |
| TCAGATCAGAGAGGGTGAGT+AGG | - | chr1_1:72693551-72693570 | None:intergenic | 50.0% | |
| GCGCACAATTCAGATCAGAG+AGG | - | chr1_1:72693560-72693579 | None:intergenic | 50.0% | |
| ACGTGTCGGACAACTAAGAC+CGG | - | chr1_1:72694004-72694023 | None:intergenic | 50.0% | |
| ACGTGTCGTACGAGTGTCAT+GGG | + | chr1_1:72694020-72694039 | Msa0042110:intron | 50.0% | |
| TATGAAGCACGGACACCTCT+AGG | - | chr1_1:72694073-72694092 | None:intergenic | 50.0% | |
| ATTGGACTTTGTAGGGACGG+GGG | + | chr1_1:72694581-72694600 | Msa0042110:intron | 50.0% | |
| TGTTCTCCAGTGATCCGCAA+AGG | + | chr1_1:72695386-72695405 | Msa0042110:intron | 50.0% | |
| ! | AAGGTACCTTTGCGGATCAC+TGG | - | chr1_1:72695395-72695414 | None:intergenic | 50.0% |
| ATGATCTGGGTATGCGGCTA+AGG | - | chr1_1:72695487-72695506 | None:intergenic | 50.0% | |
| CCCCCATAAGCCATCAACAA+AGG | - | chr1_1:72695512-72695531 | None:intergenic | 50.0% | |
| TAAACCACCTCAGGTGTGGA+TGG | - | chr1_1:72695587-72695606 | None:intergenic | 50.0% | |
| GGAGTGCACCACTGATATGA+AGG | + | chr1_1:72695970-72695989 | Msa0042110:three_prime_UTR | 50.0% | |
| TCACTCCAACGCGCCTCAAT+TGG | - | chr1_1:72690162-72690181 | None:intergenic | 55.0% | |
| ATTGAGGCGCGTTGGAGTGA+TGG | + | chr1_1:72690162-72690181 | Msa0042110:five_prime_UTR | 55.0% | |
| !! | TTTGGGGGATGGGGAGTGTT+TGG | + | chr1_1:72690277-72690296 | Msa0042110:exon | 55.0% |
| GGAGTGAGCGATGTTTCCGA+AGG | - | chr1_1:72690328-72690347 | None:intergenic | 55.0% | |
| TCAGAGCAAGGGTAACCAGC+GGG | - | chr1_1:72690411-72690430 | None:intergenic | 55.0% | |
| AGGCCATGGAGAAGCAGAAC+CGG | - | chr1_1:72690658-72690677 | None:intergenic | 55.0% | |
| GGCTTCATCCTTGCGGATCA+AGG | + | chr1_1:72691480-72691499 | Msa0042110:CDS | 55.0% | |
| !! | TAGGTGTCGGATACCGGTCT+AGG | + | chr1_1:72693939-72693958 | Msa0042110:intron | 55.0% |
| GACACTCGTACGACACGTGT+CGG | - | chr1_1:72694018-72694037 | None:intergenic | 55.0% | |
| CACGTGTCGTACGAGTGTCA+TGG | + | chr1_1:72694019-72694038 | Msa0042110:intron | 55.0% | |
| ! | TACGAGTGTCATGGGAGTGC+CGG | + | chr1_1:72694028-72694047 | Msa0042110:intron | 55.0% |
| !! | CTCTAGGACTAGACGTGTCG+CGG | - | chr1_1:72694057-72694076 | None:intergenic | 55.0% |
| TTGCTTCAACGAGTCACGCG+TGG | + | chr1_1:72694263-72694282 | Msa0042110:CDS | 55.0% | |
| ACTTTGTAGGGACGGGGGTT+GGG | + | chr1_1:72694586-72694605 | Msa0042110:intron | 55.0% | |
| GCAGTTCCTTGAGTGTGTGC+TGG | - | chr1_1:72695565-72695584 | None:intergenic | 55.0% | |
| ATCGCTCACTCCTTCGACGG+CGG | + | chr1_1:72690336-72690355 | Msa0042110:CDS | 60.0% | |
| CCATGGAGAAGCAGAACCGG+AGG | - | chr1_1:72690655-72690674 | None:intergenic | 60.0% | |
| CCTCCGGTTCTGCTTCTCCA+TGG | + | chr1_1:72690652-72690671 | Msa0042110:CDS | 60.0% | |
| CGTGGAACACGTTGGAGCCA+TGG | + | chr1_1:72691528-72691547 | Msa0042110:CDS | 60.0% | |
| ACTAGACGTGTCGCGGTGTC+CGG | - | chr1_1:72694050-72694069 | None:intergenic | 60.0% | |
| CGCGACACGTCTAGTCCTAG+AGG | + | chr1_1:72694055-72694074 | Msa0042110:intron | 60.0% | |
| GACTTTGTAGGGACGGGGGT+TGG | + | chr1_1:72694585-72694604 | Msa0042110:intron | 60.0% | |
| CTTTGTAGGGACGGGGGTTG+GGG | + | chr1_1:72694587-72694606 | Msa0042110:intron | 60.0% | |
| TTTGTAGGGACGGGGGTTGG+GGG | + | chr1_1:72694588-72694607 | Msa0042110:intron | 60.0% | |
| GGAACTGCCATCCACACCTG+AGG | + | chr1_1:72695577-72695596 | Msa0042110:CDS | 60.0% | |
| ACTGCCATCCACACCTGAGG+TGG | + | chr1_1:72695580-72695599 | Msa0042110:CDS | 60.0% | |
| ACGCGCCAATTGAGGCGCGT+TGG | + | chr1_1:72690154-72690173 | Msa0042110:five_prime_UTR | 65.0% | |
| ! | GGGTGCGCTGCCGCCGTCGA+AGG | - | chr1_1:72690349-72690368 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 72690112 | 72696139 | 72690112 | ID=Msa0042110;Name=Msa0042110 |
| chr1_1 | mRNA | 72690112 | 72696139 | 72690112 | ID=Msa0042110-mRNA-1;Parent=Msa0042110;Name=Msa0042110-mRNA-1;_AED=0.25;_eAED=0.25;_QI=173|1|1|1|1|1|9|421|407 |
| chr1_1 | exon | 72690112 | 72690437 | 72690112 | ID=Msa0042110-mRNA-1:exon:24242;Parent=Msa0042110-mRNA-1 |
| chr1_1 | exon | 72690547 | 72690684 | 72690547 | ID=Msa0042110-mRNA-1:exon:24243;Parent=Msa0042110-mRNA-1 |
| chr1_1 | exon | 72691438 | 72691578 | 72691438 | ID=Msa0042110-mRNA-1:exon:24244;Parent=Msa0042110-mRNA-1 |
| chr1_1 | exon | 72692636 | 72692746 | 72692636 | ID=Msa0042110-mRNA-1:exon:24245;Parent=Msa0042110-mRNA-1 |
| chr1_1 | exon | 72692834 | 72692977 | 72692834 | ID=Msa0042110-mRNA-1:exon:24246;Parent=Msa0042110-mRNA-1 |
| chr1_1 | exon | 72693063 | 72693103 | 72693063 | ID=Msa0042110-mRNA-1:exon:24247;Parent=Msa0042110-mRNA-1 |
| chr1_1 | exon | 72693214 | 72693290 | 72693214 | ID=Msa0042110-mRNA-1:exon:24248;Parent=Msa0042110-mRNA-1 |
| chr1_1 | exon | 72694253 | 72694348 | 72694253 | ID=Msa0042110-mRNA-1:exon:24249;Parent=Msa0042110-mRNA-1 |
| chr1_1 | exon | 72695396 | 72696139 | 72695396 | ID=Msa0042110-mRNA-1:exon:24250;Parent=Msa0042110-mRNA-1 |
| chr1_1 | five_prime_UTR | 72690112 | 72690284 | 72690112 | ID=Msa0042110-mRNA-1:five_prime_utr;Parent=Msa0042110-mRNA-1 |
| chr1_1 | CDS | 72690285 | 72690437 | 72690285 | ID=Msa0042110-mRNA-1:cds;Parent=Msa0042110-mRNA-1 |
| chr1_1 | CDS | 72690547 | 72690684 | 72690547 | ID=Msa0042110-mRNA-1:cds;Parent=Msa0042110-mRNA-1 |
| chr1_1 | CDS | 72691438 | 72691578 | 72691438 | ID=Msa0042110-mRNA-1:cds;Parent=Msa0042110-mRNA-1 |
| chr1_1 | CDS | 72692636 | 72692746 | 72692636 | ID=Msa0042110-mRNA-1:cds;Parent=Msa0042110-mRNA-1 |
| chr1_1 | CDS | 72692834 | 72692977 | 72692834 | ID=Msa0042110-mRNA-1:cds;Parent=Msa0042110-mRNA-1 |
| chr1_1 | CDS | 72693063 | 72693103 | 72693063 | ID=Msa0042110-mRNA-1:cds;Parent=Msa0042110-mRNA-1 |
| chr1_1 | CDS | 72693214 | 72693290 | 72693214 | ID=Msa0042110-mRNA-1:cds;Parent=Msa0042110-mRNA-1 |
| chr1_1 | CDS | 72694253 | 72694348 | 72694253 | ID=Msa0042110-mRNA-1:cds;Parent=Msa0042110-mRNA-1 |
| chr1_1 | CDS | 72695396 | 72695718 | 72695396 | ID=Msa0042110-mRNA-1:cds;Parent=Msa0042110-mRNA-1 |
| chr1_1 | three_prime_UTR | 72695719 | 72696139 | 72695719 | ID=Msa0042110-mRNA-1:three_prime_utr;Parent=Msa0042110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
