AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1143910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143910 MtrunA17_Chr4g0076941 97.071 478 13 1 1 477 1 478 0.0 969
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143910 AT2G23390.1 64.384 438 147 5 40 476 39 468 0.0 597
Msa1143910 AT2G23390.2 58.362 293 113 5 40 331 39 323 1.23e-117 348

Find 111 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGCTTCTTCATTGTTT+TGG 0.187588 7_4:+19816330 Msa1143910:CDS
TATCTCCTCCGATAAGATTT+AGG 0.198654 7_4:-19818324 None:intergenic
TTCATCCTTTATGACAAAAT+TGG 0.214692 7_4:+19820605 Msa1143910:three_prime_UTR
TATCAAATACTATTATTTAA+TGG 0.223800 7_4:-19820567 None:intergenic
TCCTAAAATCTTCATCAATA+AGG 0.250782 7_4:-19819132 None:intergenic
ATCGGAGGAGATACTTTGTT+TGG 0.255198 7_4:+19818334 Msa1143910:CDS
ATCAGTTGTGTTCCTGTAAA+AGG 0.287829 7_4:-19818091 None:intergenic
GATTCCATTGTGAACATAAC+TGG 0.293483 7_4:+19820671 Msa1143910:three_prime_UTR
ATGAAACTCTTGCGTGATTC+TGG 0.301919 7_4:+19820406 Msa1143910:CDS
CATCAAGAAGTCATCAAAAT+TGG 0.305067 7_4:-19817035 None:intergenic
TACTTTGTTTGGGCGCCTAT+GGG 0.320826 7_4:+19818345 Msa1143910:CDS
TGGACTTGAAGCATAATAAA+AGG 0.322434 7_4:+19817056 Msa1143910:CDS
CTTCATTGTTTCTGCTATCA+AGG 0.339354 7_4:+19816880 Msa1143910:CDS
AACAGTAGAAGCAGGAGCTC+AGG 0.354032 7_4:+19819054 Msa1143910:CDS
ATCTCCTCCGATAAGATTTA+GGG 0.357422 7_4:-19818323 None:intergenic
ATACTTTGTTTGGGCGCCTA+TGG 0.360153 7_4:+19818344 Msa1143910:CDS
CTCTTCTTCCGTTAAGGAAA+AGG 0.368696 7_4:+19816613 Msa1143910:CDS
TTCTTCAGATTCTGTTGTGC+TGG 0.371658 7_4:-19816438 None:intergenic
TAACTTAGGATAATAAGAAT+TGG 0.381000 7_4:-19816777 None:intergenic
CCTCCGCGGTTATGAAATAA+AGG 0.384557 7_4:+19817135 Msa1143910:CDS
ACTATCCTCTTCTTCCGTTA+AGG 0.393455 7_4:+19816607 Msa1143910:CDS
TATCTCAAGACCCATTCTTA+TGG 0.394349 7_4:+19816701 Msa1143910:CDS
GCGTGATTCTGGTCCTTTCA+AGG 0.412822 7_4:+19820417 Msa1143910:CDS
TCGGAGGAGATACTTTGTTT+GGG 0.421122 7_4:+19818335 Msa1143910:CDS
AAGATCCTTGGACCGGTGAC+AGG 0.427977 7_4:-19816821 None:intergenic
AGAAAAGCATGAGATAGAAA+TGG 0.428041 7_4:-19816572 None:intergenic
TGATACTGCATTCCAATCCT+TGG 0.431814 7_4:-19816992 None:intergenic
AAACGAATTCACCATAAGAA+TGG 0.432976 7_4:-19816712 None:intergenic
AAGTATATACACACATTGGC+AGG 0.435627 7_4:+19820455 Msa1143910:three_prime_UTR
CTCAACAAGGTTTCCTCCCA+AGG 0.441149 7_4:+19816975 Msa1143910:CDS
TTTAGTTCGTGAATCTTCTC+AGG 0.441303 7_4:+19819171 Msa1143910:CDS
CAAGGTTTCCTCCCAAGGAT+TGG 0.444591 7_4:+19816980 Msa1143910:CDS
GTTCCTGTAAAAGGTGTAGA+AGG 0.446583 7_4:-19818082 None:intergenic
AGAAATGGATTGAACTTGTC+TGG 0.447172 7_4:-19816557 None:intergenic
GTCCCCTTCACCCCTGTCAC+CGG 0.447336 7_4:+19816809 Msa1143910:CDS
TCTTCTTCCGTTAAGGAAAA+GGG 0.453381 7_4:+19816614 Msa1143910:CDS
ATAATAGTATTTGATACGTT+GGG 0.458271 7_4:+19820574 Msa1143910:three_prime_UTR
TGGACCGGTGACAGGGGTGA+AGG 0.472861 7_4:-19816813 None:intergenic
GCAGGTGCCCTAAATCTTAT+CGG 0.472899 7_4:+19818316 Msa1143910:CDS
CATGCATCCCATTGGGTGGA+TGG 0.473633 7_4:-19816512 None:intergenic
TACAGGACACCTTCCTTGAA+AGG 0.480946 7_4:-19820430 None:intergenic
CCTTAGCGACGATGTGGTGT+GGG 0.483870 7_4:-19816643 None:intergenic
TGCAACGTGGCGAGGAGTGA+GGG 0.484366 7_4:+19816191 Msa1143910:five_prime_UTR
GCATGTGCTCTTGATGCTAC+AGG 0.485050 7_4:+19816530 Msa1143910:CDS
AACGAATTCACCATAAGAAT+GGG 0.486994 7_4:-19816711 None:intergenic
ACTTTGTTTGGGCGCCTATG+GGG 0.488318 7_4:+19818346 Msa1143910:CDS
AATAATAGTATTTGATACGT+TGG 0.492414 7_4:+19820573 Msa1143910:three_prime_UTR
GGGACACAGGATTGTAACTT+AGG 0.494260 7_4:-19816791 None:intergenic
AATCTTCATCAATAAGGTAA+TGG 0.498534 7_4:-19819126 None:intergenic
CAAGAGCACATGCATCCCAT+TGG 0.498784 7_4:-19816520 None:intergenic
GATACTGCATTCCAATCCTT+GGG 0.505001 7_4:-19816991 None:intergenic
AGATATTCCATCCACCCAAT+GGG 0.507877 7_4:+19816505 Msa1143910:CDS
AAGAGCACATGCATCCCATT+GGG 0.508867 7_4:-19816519 None:intergenic
GGACCGGTGACAGGGGTGAA+GGG 0.511776 7_4:-19816812 None:intergenic
GGATTGGAATGCAGTATCAC+TGG 0.517110 7_4:+19816996 Msa1143910:CDS
TGTATTGGAAGGCAAAGCAC+TGG 0.517699 7_4:+19818055 Msa1143910:intron
ACAGTAGAAGCAGGAGCTCA+GGG 0.519444 7_4:+19819055 Msa1143910:CDS
AATCTTAAAACAGTAGAAGC+AGG 0.528907 7_4:+19819046 Msa1143910:CDS
CTTTGTTTGGGCGCCTATGG+GGG 0.531740 7_4:+19818347 Msa1143910:CDS
CAGATATTCCATCCACCCAA+TGG 0.533439 7_4:+19816504 Msa1143910:CDS
AGTAAATTTGCAACGTGGCG+AGG 0.533665 7_4:+19816183 None:intergenic
TGTGTGTATATACTTTCTAC+AGG 0.534692 7_4:-19820447 None:intergenic
GACCGGTGACAGGGGTGAAG+GGG 0.538489 7_4:-19816811 None:intergenic
TGGCAGCTATATGTTGTCAC+TGG 0.539979 7_4:-19819106 None:intergenic
TCACCCCTGTCACCGGTCCA+AGG 0.547400 7_4:+19816816 Msa1143910:CDS
TCCTTAGCGACGATGTGGTG+TGG 0.549897 7_4:-19816644 None:intergenic
GATTCTGGTCCTTTCAAGGA+AGG 0.553359 7_4:+19820421 Msa1143910:CDS
GACAATGAGGAACTAGTAGC+AGG 0.554102 7_4:+19818298 Msa1143910:CDS
GTGTTACGAAGTAAGATCCT+TGG 0.554201 7_4:-19816833 None:intergenic
AGATCCTTGGACCGGTGACA+GGG 0.562433 7_4:-19816820 None:intergenic
CCCACACCACATCGTCGCTA+AGG 0.564713 7_4:+19816643 Msa1143910:CDS
CATCAAAATTGGTATAGTTG+CGG 0.569693 7_4:-19817024 None:intergenic
GCAACGTGGCGAGGAGTGAG+GGG 0.573897 7_4:+19816192 Msa1143910:five_prime_UTR
TTGCAACGTGGCGAGGAGTG+AGG 0.574434 7_4:+19816190 Msa1143910:five_prime_UTR
GAAGATTTGCGATGATGAGA+CGG 0.577972 7_4:-19816266 None:intergenic
AAAATTGGTATAGTTGCGGT+TGG 0.578782 7_4:-19817020 None:intergenic
GTATTGGAAGGCAAAGCACT+GGG 0.581666 7_4:+19818056 Msa1143910:intron
CTTTATGACAAAATTGGAGA+CGG 0.585341 7_4:+19820611 Msa1143910:three_prime_UTR
TTATGCCACTCGCTTTCAGA+GGG 0.586566 7_4:-19816947 None:intergenic
GAATGGGTCTTGAGATAGAG+AGG 0.593847 7_4:-19816695 None:intergenic
GACAGGGGTGAAGGGGACAC+AGG 0.595023 7_4:-19816804 None:intergenic
TTTATGCCACTCGCTTTCAG+AGG 0.605317 7_4:-19816948 None:intergenic
CTTCCGTTAAGGAAAAGGGA+TGG 0.609262 7_4:+19816618 Msa1143910:CDS
TGGCATAAATTCACTCAACA+AGG 0.610427 7_4:+19816962 Msa1143910:CDS
ACGAAGTAAGATCCTTGGAC+CGG 0.613289 7_4:-19816828 None:intergenic
AGCACATGCATCCCATTGGG+TGG 0.614598 7_4:-19816516 None:intergenic
TATTGTTGCTGAAGACAATG+AGG 0.626085 7_4:+19818285 Msa1143910:CDS
GGGGTACTCCTTTCCTGACG+AGG 0.627955 7_4:+19818215 Msa1143910:CDS
TGTATGTACAGTTGAATCAG+TGG 0.630123 7_4:+19820544 Msa1143910:three_prime_UTR
AGTATATACACACATTGGCA+GGG 0.630667 7_4:+19820456 Msa1143910:three_prime_UTR
TAGAAAGTATATACACACAT+TGG 0.632394 7_4:+19820451 Msa1143910:exon
GTGATGGCAGCAGTAGCGAT+AGG 0.633008 7_4:+19816215 Msa1143910:exon
GAATATCCTTAGCGACGATG+TGG 0.635094 7_4:-19816649 None:intergenic
CAGCAGTAGCGATAGGAGTG+AGG 0.642392 7_4:+19816222 Msa1143910:CDS
CAACGTGGCGAGGAGTGAGG+GGG 0.644733 7_4:+19816193 Msa1143910:five_prime_UTR
GGTGAACATAAGATTGAGCG+TGG 0.646705 7_4:+19819076 Msa1143910:CDS
GATACGACAAGAGCGCAAGA+AGG 0.649218 7_4:+19817084 Msa1143910:CDS
GGGTACTCCTTTCCTGACGA+GGG 0.651005 7_4:+19818216 Msa1143910:CDS
GATCCTTGGACCGGTGACAG+GGG 0.654306 7_4:-19816819 None:intergenic
CTTAGCGACGATGTGGTGTG+GGG 0.656713 7_4:-19816642 None:intergenic
TTGATTATGAAACGCCTCCG+CGG 0.657077 7_4:+19817121 Msa1143910:CDS
AGAGGGAAAAGTGACATGGA+AGG 0.667089 7_4:-19816930 None:intergenic
GAAGGAAGAAAGTTGAGACA+TGG 0.667244 7_4:-19816912 None:intergenic
ACTGCATTCCAATCCTTGGG+AGG 0.675258 7_4:-19816988 None:intergenic
CCTTTATTTCATAACCGCGG+AGG 0.676519 7_4:-19817135 None:intergenic
ATACCTTTATTTCATAACCG+CGG 0.679434 7_4:-19817138 None:intergenic
TTTCAGAGGGAAAAGTGACA+TGG 0.681334 7_4:-19816934 None:intergenic
TGTGCTCTTGATGCTACAGG+AGG 0.695186 7_4:+19816533 Msa1143910:CDS
TGTACCAGTTATGTTCACAA+TGG 0.704578 7_4:-19820675 None:intergenic
GGTGCCCTAAATCTTATCGG+AGG 0.709526 7_4:+19818319 Msa1143910:CDS
ATCCAAGTAAATTTGCAACG+TGG 0.745608 7_4:+19816178 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAAATAGAACAAAAT+GGG - chr7_4:19818822-19818841 None:intergenic 10.0%
!!! ATTTTGTTCTATTTTTAATA+GGG + chr7_4:19818822-19818841 Msa1143910:intron 10.0%
!! TATCAAATACTATTATTTAA+TGG - chr7_4:19820570-19820589 None:intergenic 10.0%
!!! TATTTTATTGCAAAAACTTT+AGG + chr7_4:19817840-19817859 Msa1143910:intron 15.0%
!!! TTATTTTTAGAGATTTTCAT+AGG + chr7_4:19817953-19817972 Msa1143910:intron 15.0%
!!! AATTTTGTATTACAATATTG+TGG - chr7_4:19818141-19818160 None:intergenic 15.0%
!! AAATAATTCAACAATATTTG+AGG - chr7_4:19818451-19818470 None:intergenic 15.0%
!! CTATTAAAAATAGAACAAAA+TGG - chr7_4:19818823-19818842 None:intergenic 15.0%
!!! CATTTTGTTCTATTTTTAAT+AGG + chr7_4:19818821-19818840 Msa1143910:intron 15.0%
!!! CATTTTATATATTTGCATTT+TGG + chr7_4:19818986-19819005 Msa1143910:intron 15.0%
!!! TAAATCATTTTATCAAATAG+AGG + chr7_4:19819262-19819281 Msa1143910:intron 15.0%
!! AAACTCAAAAATTATATTGA+AGG + chr7_4:19819698-19819717 Msa1143910:intron 15.0%
!!! AATGGTTTTATAATTATTAC+TGG + chr7_4:19820282-19820301 Msa1143910:intron 15.0%
!!! ATGGTTTTATAATTATTACT+GGG + chr7_4:19820283-19820302 Msa1143910:intron 15.0%
!! TAACTTAGGATAATAAGAAT+TGG - chr7_4:19816780-19816799 None:intergenic 20.0%
!! ACAAGAAAAAAAAAATTCCA+CGG + chr7_4:19817338-19817357 Msa1143910:intron 20.0%
!!! TTTTCTTTTTCCATTATTTG+AGG - chr7_4:19817561-19817580 None:intergenic 20.0%
!! ATTATGTAGTTGAAATTGTT+TGG + chr7_4:19817714-19817733 Msa1143910:intron 20.0%
!!! AAAAACTTTAGGATGTATTT+GGG + chr7_4:19817851-19817870 Msa1143910:intron 20.0%
!!! TTTATTATTTACATTTTGGC+TGG + chr7_4:19818468-19818487 Msa1143910:intron 20.0%
!!! TTATTATTTACATTTTGGCT+GGG + chr7_4:19818469-19818488 Msa1143910:intron 20.0%
!! TATTCCATCTAAATCATTTA+TGG + chr7_4:19818541-19818560 Msa1143910:intron 20.0%
!! TATTCCATAAATGATTTAGA+TGG - chr7_4:19818548-19818567 None:intergenic 20.0%
!! AGAAACTATTAGTAAAGATT+TGG + chr7_4:19819419-19819438 Msa1143910:intron 20.0%
!! AGATTTGGAAATTAATTAGT+TGG + chr7_4:19819434-19819453 Msa1143910:intron 20.0%
!! TCAAAAATTATATTGAAGGA+GGG + chr7_4:19819702-19819721 Msa1143910:intron 20.0%
!!! GAACAATCTCTAAAAAAATA+CGG + chr7_4:19819820-19819839 Msa1143910:intron 20.0%
!! AATAATAGTATTTGATACGT+TGG + chr7_4:19820573-19820592 Msa1143910:three_prime_UTR 20.0%
!! ATAATAGTATTTGATACGTT+GGG + chr7_4:19820574-19820593 Msa1143910:three_prime_UTR 20.0%
!!! AATTCGTTTTTGATCATTCT+TGG + chr7_4:19816726-19816745 Msa1143910:CDS 25.0%
!!! ATTCGTTTTTGATCATTCTT+GGG + chr7_4:19816727-19816746 Msa1143910:CDS 25.0%
! ATAAAAATGAGAGTAAGCAT+TGG - chr7_4:19816753-19816772 None:intergenic 25.0%
!!! AATGCTTACTCTCATTTTTA+TGG + chr7_4:19816752-19816771 Msa1143910:CDS 25.0%
! CAAGAAAAAAAAAATTCCAC+GGG + chr7_4:19817339-19817358 Msa1143910:intron 25.0%
! AAGAAAAAAAAAATTCCACG+GGG + chr7_4:19817340-19817359 Msa1143910:intron 25.0%
! AAAGTCTAAACCTCAAATAA+TGG + chr7_4:19817548-19817567 Msa1143910:intron 25.0%
! ATATGAAAACACTGAAACAT+TGG - chr7_4:19817696-19817715 None:intergenic 25.0%
! ACTTCATTGTAATCTCTTAA+AGG - chr7_4:19817821-19817840 None:intergenic 25.0%
!!! CAAAAACTTTAGGATGTATT+TGG + chr7_4:19817850-19817869 Msa1143910:intron 25.0%
! GATACAAAGTGAAAACAATT+TGG - chr7_4:19817933-19817952 None:intergenic 25.0%
!! TTAGAGATTTTCATAGGAAA+TGG + chr7_4:19817959-19817978 Msa1143910:intron 25.0%
! TCTATTTGCTTTCTAATTAC+TGG + chr7_4:19818019-19818038 Msa1143910:intron 25.0%
!!! TATTTCGTTTTTGTATTGGA+AGG + chr7_4:19818044-19818063 Msa1143910:intron 25.0%
! GTAGTGTCTAAATATTAGTA+TGG + chr7_4:19818173-19818192 Msa1143910:intron 25.0%
! AAAAATGGATAGTAAGTTTG+TGG - chr7_4:19818379-19818398 None:intergenic 25.0%
!!! TTTTGAAGCATGTTATTATC+AGG + chr7_4:19818402-19818421 Msa1143910:CDS 25.0%
! ACTATAGCATTATTCTCTAA+TGG - chr7_4:19818506-19818525 None:intergenic 25.0%
!! ATGGAATAAACTTTTCAGTT+TGG + chr7_4:19818560-19818579 Msa1143910:intron 25.0%
! TTAACTTATAGACGGTATTT+GGG + chr7_4:19818702-19818721 Msa1143910:intron 25.0%
! AATCTTCATCAATAAGGTAA+TGG - chr7_4:19819129-19819148 None:intergenic 25.0%
!! ACCTTATTGATGAAGATTTT+AGG + chr7_4:19819131-19819150 Msa1143910:CDS 25.0%
! TCCTAAAATCTTCATCAATA+AGG - chr7_4:19819135-19819154 None:intergenic 25.0%
! TTTGTCTCTACAAAATCTAT+AGG - chr7_4:19819377-19819396 None:intergenic 25.0%
! TAATTAGTTGGATCGAAATA+TGG + chr7_4:19819446-19819465 Msa1143910:intron 25.0%
! CTCAAAAATTATATTGAAGG+AGG + chr7_4:19819701-19819720 Msa1143910:intron 25.0%
!!! GTTGTTTTTGTTTGTGTTAA+AGG + chr7_4:19819999-19820018 Msa1143910:intron 25.0%
!!! TTTTTGTTTGTGTTAAAGGT+GGG + chr7_4:19820003-19820022 Msa1143910:intron 25.0%
! GAGAAGTTATAACTACATTA+AGG - chr7_4:19820080-19820099 None:intergenic 25.0%
! TAACTTCTCATCTAATCAAA+AGG + chr7_4:19820091-19820110 Msa1143910:intron 25.0%
! AAAAGTTTGCATTCTTTCAA+TGG + chr7_4:19820264-19820283 Msa1143910:intron 25.0%
!! TAGAAAGTATATACACACAT+TGG + chr7_4:19820451-19820470 Msa1143910:exon 25.0%
! TTCATCCTTTATGACAAAAT+TGG + chr7_4:19820605-19820624 Msa1143910:three_prime_UTR 25.0%
! TCAATGCTTCTTCATTGTTT+TGG + chr7_4:19816330-19816349 Msa1143910:CDS 30.0%
! CAATGCTTCTTCATTGTTTT+GGG + chr7_4:19816331-19816350 Msa1143910:CDS 30.0%
!! AATGCTTCTTCATTGTTTTG+GGG + chr7_4:19816332-19816351 Msa1143910:CDS 30.0%
! AGAAAAGCATGAGATAGAAA+TGG - chr7_4:19816575-19816594 None:intergenic 30.0%
AACGAATTCACCATAAGAAT+GGG - chr7_4:19816714-19816733 None:intergenic 30.0%
AAACGAATTCACCATAAGAA+TGG - chr7_4:19816715-19816734 None:intergenic 30.0%
CATCAAAATTGGTATAGTTG+CGG - chr7_4:19817027-19817046 None:intergenic 30.0%
CATCAAGAAGTCATCAAAAT+TGG - chr7_4:19817038-19817057 None:intergenic 30.0%
!! CAATTTTGATGACTTCTTGA+TGG + chr7_4:19817036-19817055 Msa1143910:CDS 30.0%
TGGACTTGAAGCATAATAAA+AGG + chr7_4:19817056-19817075 Msa1143910:CDS 30.0%
! ATACCTTTATTTCATAACCG+CGG - chr7_4:19817141-19817160 None:intergenic 30.0%
GTAAACTTCTGTTGAACAAA+TGG + chr7_4:19817231-19817250 Msa1143910:intron 30.0%
CTATACAAGACATGACAAAT+TGG - chr7_4:19817260-19817279 None:intergenic 30.0%
TTTGTCATGTCTTGTATAGT+AGG + chr7_4:19817261-19817280 Msa1143910:intron 30.0%
! CTTCATAGTTCTATGTTTGT+CGG + chr7_4:19817307-19817326 Msa1143910:intron 30.0%
AGTTAGTTAAAGCCAAATGA+AGG + chr7_4:19817445-19817464 Msa1143910:intron 30.0%
GTTAGTTAAAGCCAAATGAA+GGG + chr7_4:19817446-19817465 Msa1143910:intron 30.0%
TCGTTCAGATGTTTAATGAT+TGG - chr7_4:19817601-19817620 None:intergenic 30.0%
!! GGCATATTTCGTTTTTGTAT+TGG + chr7_4:19818040-19818059 Msa1143910:intron 30.0%
CTAAATATTAGTATGGCTAC+TGG + chr7_4:19818180-19818199 Msa1143910:intron 30.0%
!!! AGGGAATTTTTTCATGAGAT+GGG + chr7_4:19818235-19818254 Msa1143910:CDS 30.0%
CATGCTTCAAAATGCAAAAA+TGG - chr7_4:19818394-19818413 None:intergenic 30.0%
GTTAACTTATAGACGGTATT+TGG + chr7_4:19818701-19818720 Msa1143910:intron 30.0%
ATAGAACAAAATGGGAGATA+AGG - chr7_4:19818814-19818833 None:intergenic 30.0%
!!! AGGAGAAACATGCTATTTTT+TGG - chr7_4:19818888-19818907 None:intergenic 30.0%
TCAAAGGCCTATTTACTATT+AGG + chr7_4:19818959-19818978 Msa1143910:intron 30.0%
CAAAGGCCTATTTACTATTA+GGG + chr7_4:19818960-19818979 Msa1143910:intron 30.0%
ATGCTTCCCTAATAGTAAAT+AGG - chr7_4:19818969-19818988 None:intergenic 30.0%
AATCTTAAAACAGTAGAAGC+AGG + chr7_4:19819046-19819065 Msa1143910:CDS 30.0%
AAAGTGAACTTAGAAAGACA+AGG - chr7_4:19819226-19819245 None:intergenic 30.0%
CTCTACAAAATCTATAGGTA+AGG - chr7_4:19819372-19819391 None:intergenic 30.0%
TTATGCTTACTTTGCAAGTT+TGG + chr7_4:19819566-19819585 Msa1143910:intron 30.0%
! ATAAACCCCATATTCAAGTT+GGG - chr7_4:19819648-19819667 None:intergenic 30.0%
AATAAACCCCATATTCAAGT+TGG - chr7_4:19819649-19819668 None:intergenic 30.0%
!! TTTGAGTTTCTCCATTTTGA+GGG - chr7_4:19819687-19819706 None:intergenic 30.0%
!!! TTTTGAGTTTCTCCATTTTG+AGG - chr7_4:19819688-19819707 None:intergenic 30.0%
TTAATCATTAAAGCCAAGCT+GGG + chr7_4:19819953-19819972 Msa1143910:intron 30.0%
!! GTTTTTGTTTGTGTTAAAGG+TGG + chr7_4:19820002-19820021 Msa1143910:intron 30.0%
GATAGTCATAACTAGGATAT+AGG - chr7_4:19820048-19820067 None:intergenic 30.0%
TAAGTTCTTAAGCCAACAAA+TGG - chr7_4:19820191-19820210 None:intergenic 30.0%
TGTGTGTATATACTTTCTAC+AGG - chr7_4:19820450-19820469 None:intergenic 30.0%
CTTTATGACAAAATTGGAGA+CGG + chr7_4:19820611-19820630 Msa1143910:three_prime_UTR 30.0%
!!! ATTGTTTTGGGGATCTTCTA+AGG + chr7_4:19816343-19816362 Msa1143910:CDS 35.0%
!! AGAAATGGATTGAACTTGTC+TGG - chr7_4:19816560-19816579 None:intergenic 35.0%
TCTTCTTCCGTTAAGGAAAA+GGG + chr7_4:19816614-19816633 Msa1143910:CDS 35.0%
TATCTCAAGACCCATTCTTA+TGG + chr7_4:19816701-19816720 Msa1143910:CDS 35.0%
!! CTTCATTGTTTCTGCTATCA+AGG + chr7_4:19816880-19816899 Msa1143910:CDS 35.0%
TGGCATAAATTCACTCAACA+AGG + chr7_4:19816962-19816981 Msa1143910:CDS 35.0%
AAAATTGGTATAGTTGCGGT+TGG - chr7_4:19817023-19817042 None:intergenic 35.0%
TCATGTCTTGTATAGTAGGA+GGG + chr7_4:19817265-19817284 Msa1143910:intron 35.0%
AAAAAAAAATTCCACGGGGT+TGG + chr7_4:19817344-19817363 Msa1143910:intron 35.0%
ACACAGCATGTTCTAATGAA+TGG + chr7_4:19817400-19817419 Msa1143910:intron 35.0%
GTAGATGCTAGAGTTTCAAA+AGG + chr7_4:19817512-19817531 Msa1143910:intron 35.0%
! TAGAGTTTCAAAAGGTGCAA+TGG + chr7_4:19817520-19817539 Msa1143910:intron 35.0%
ATGTAACACCAAACAATCAG+TGG + chr7_4:19817635-19817654 Msa1143910:intron 35.0%
TGTAACACCAAACAATCAGT+GGG + chr7_4:19817636-19817655 Msa1143910:intron 35.0%
! TTCTATTCCTAGAGAAGCAT+TGG - chr7_4:19817669-19817688 None:intergenic 35.0%
!! TTTAGGATGTATTTGGGTTG+AGG + chr7_4:19817857-19817876 Msa1143910:intron 35.0%
AATGGTGAAACAAACCAAAC+AGG + chr7_4:19817977-19817996 Msa1143910:intron 35.0%
TAGAATGCATCATAACCCAA+GGG - chr7_4:19818003-19818022 None:intergenic 35.0%
ATAGAATGCATCATAACCCA+AGG - chr7_4:19818004-19818023 None:intergenic 35.0%
! ATTCCTTCTACACCTTTTAC+AGG + chr7_4:19818079-19818098 Msa1143910:CDS 35.0%
ATCAGTTGTGTTCCTGTAAA+AGG - chr7_4:19818094-19818113 None:intergenic 35.0%
!!! GAGGGAATTTTTTCATGAGA+TGG + chr7_4:19818234-19818253 Msa1143910:CDS 35.0%
TCATGAGATGGGATCAAAAA+TGG + chr7_4:19818246-19818265 Msa1143910:CDS 35.0%
CATGAGATGGGATCAAAAAT+GGG + chr7_4:19818247-19818266 Msa1143910:CDS 35.0%
TATTGTTGCTGAAGACAATG+AGG + chr7_4:19818285-19818304 Msa1143910:CDS 35.0%
ATCTCCTCCGATAAGATTTA+GGG - chr7_4:19818326-19818345 None:intergenic 35.0%
TATCTCCTCCGATAAGATTT+AGG - chr7_4:19818327-19818346 None:intergenic 35.0%
TGTGGGTGTTAACTTATAGA+CGG + chr7_4:19818694-19818713 Msa1143910:intron 35.0%
TGGGAGATAAGGTAAAAATG+TGG - chr7_4:19818803-19818822 None:intergenic 35.0%
! TTTAGTTCGTGAATCTTCTC+AGG + chr7_4:19819171-19819190 Msa1143910:CDS 35.0%
ATAGTCTCCCAACTTGAATA+TGG + chr7_4:19819638-19819657 Msa1143910:intron 35.0%
TAGTCTCCCAACTTGAATAT+GGG + chr7_4:19819639-19819658 Msa1143910:intron 35.0%
AACACAAAATCCCCTCAAAA+TGG + chr7_4:19819673-19819692 Msa1143910:intron 35.0%
! TTGAGTTTCTCCATTTTGAG+GGG - chr7_4:19819686-19819705 None:intergenic 35.0%
GATTAAGGAGTAATCCTATC+AGG - chr7_4:19819939-19819958 None:intergenic 35.0%
!! CAGCTTGGCTTTAATGATTA+AGG - chr7_4:19819954-19819973 None:intergenic 35.0%
CTTAATCATTAAAGCCAAGC+TGG + chr7_4:19819952-19819971 Msa1143910:intron 35.0%
CAAACAAAAACAACACATCC+TGG - chr7_4:19819993-19820012 None:intergenic 35.0%
ATCAGTCGATAGTCATAACT+AGG - chr7_4:19820055-19820074 None:intergenic 35.0%
! TTAAGCACAGTAGTGCATTT+TGG + chr7_4:19820230-19820249 Msa1143910:intron 35.0%
TGTCACATTATCAAGTGCTT+TGG - chr7_4:19820359-19820378 None:intergenic 35.0%
AAGTATATACACACATTGGC+AGG + chr7_4:19820455-19820474 Msa1143910:three_prime_UTR 35.0%
AGTATATACACACATTGGCA+GGG + chr7_4:19820456-19820475 Msa1143910:three_prime_UTR 35.0%
TGTATGTACAGTTGAATCAG+TGG + chr7_4:19820544-19820563 Msa1143910:three_prime_UTR 35.0%
! CGTCTCCAATTTTGTCATAA+AGG - chr7_4:19820613-19820632 None:intergenic 35.0%
GATTCCATTGTGAACATAAC+TGG + chr7_4:19820671-19820690 Msa1143910:three_prime_UTR 35.0%
GAAGATTTGCGATGATGAGA+CGG - chr7_4:19816269-19816288 None:intergenic 40.0%
TTCTTCAGATTCTGTTGTGC+TGG - chr7_4:19816441-19816460 None:intergenic 40.0%
AGATATTCCATCCACCCAAT+GGG + chr7_4:19816505-19816524 Msa1143910:CDS 40.0%
ACTATCCTCTTCTTCCGTTA+AGG + chr7_4:19816607-19816626 Msa1143910:CDS 40.0%
! CTTTTCCTTAACGGAAGAAG+AGG - chr7_4:19816615-19816634 None:intergenic 40.0%
CTCTTCTTCCGTTAAGGAAA+AGG + chr7_4:19816613-19816632 Msa1143910:CDS 40.0%
GTGTTACGAAGTAAGATCCT+TGG - chr7_4:19816836-19816855 None:intergenic 40.0%
GAAGGAAGAAAGTTGAGACA+TGG - chr7_4:19816915-19816934 None:intergenic 40.0%
TTTCAGAGGGAAAAGTGACA+TGG - chr7_4:19816937-19816956 None:intergenic 40.0%
GATACTGCATTCCAATCCTT+GGG - chr7_4:19816994-19817013 None:intergenic 40.0%
TGATACTGCATTCCAATCCT+TGG - chr7_4:19816995-19817014 None:intergenic 40.0%
GTCATGTCTTGTATAGTAGG+AGG + chr7_4:19817264-19817283 Msa1143910:intron 40.0%
AGTTCTATGTTTGTCGGTGT+TGG + chr7_4:19817313-19817332 Msa1143910:intron 40.0%
ATTAGAACATGCTGTGTCAG+TGG - chr7_4:19817397-19817416 None:intergenic 40.0%
GCTGTAATTCACCCTTCATT+TGG - chr7_4:19817460-19817479 None:intergenic 40.0%
CTCTGCATATGGGTCAAAAT+TGG - chr7_4:19817493-19817512 None:intergenic 40.0%
CTAGCATCTACTCTGCATAT+GGG - chr7_4:19817503-19817522 None:intergenic 40.0%
TCTAGCATCTACTCTGCATA+TGG - chr7_4:19817504-19817523 None:intergenic 40.0%
GTAACACCAAACAATCAGTG+GGG + chr7_4:19817637-19817656 Msa1143910:intron 40.0%
! TAACTTCCCCACTGATTGTT+TGG - chr7_4:19817646-19817665 None:intergenic 40.0%
GAAGTTACCAATGCTTCTCT+AGG + chr7_4:19817659-19817678 Msa1143910:intron 40.0%
AAAGTGAACTTCTGTCAGAG+AGG - chr7_4:19817794-19817813 None:intergenic 40.0%
! CTCTGACAGAAGTTCACTTT+TGG + chr7_4:19817794-19817813 Msa1143910:intron 40.0%
! GTTCCTGTAAAAGGTGTAGA+AGG - chr7_4:19818085-19818104 None:intergenic 40.0%
AAAAATTCCCTCGTCAGGAA+AGG - chr7_4:19818226-19818245 None:intergenic 40.0%
CATGAAAAAATTCCCTCGTC+AGG - chr7_4:19818231-19818250 None:intergenic 40.0%
ATCGGAGGAGATACTTTGTT+TGG + chr7_4:19818334-19818353 Msa1143910:CDS 40.0%
! TCGGAGGAGATACTTTGTTT+GGG + chr7_4:19818335-19818354 Msa1143910:CDS 40.0%
!!! TTTACATTTTGGCTGGGCTT+TGG + chr7_4:19818475-19818494 Msa1143910:intron 40.0%
CTAAATTAGCCCACCCAAAT+CGG + chr7_4:19818607-19818626 Msa1143910:intron 40.0%
CATCAAAGCCACACTGAAAA+AGG - chr7_4:19818676-19818695 None:intergenic 40.0%
!!! TTTTCAGTGTGGCTTTGATG+TGG + chr7_4:19818676-19818695 Msa1143910:intron 40.0%
!! TTTCAGTGTGGCTTTGATGT+GGG + chr7_4:19818677-19818696 Msa1143910:intron 40.0%
! TATACTTTAGTTCCGCCACT+TGG - chr7_4:19818780-19818799 None:intergenic 40.0%
! ACTGCAGTGCGACTTTTAAA+AGG - chr7_4:19818908-19818927 None:intergenic 40.0%
!!! GCATTTTGGTTTGACATCAC+AGG + chr7_4:19819000-19819019 Msa1143910:intron 40.0%
TTCGTGAATCTTCTCAGGTA+TGG + chr7_4:19819176-19819195 Msa1143910:intron 40.0%
AAGGAGAGTAGATCATCAGA+TGG - chr7_4:19819353-19819372 None:intergenic 40.0%
!! CTTGCTTGTTGTTGTTGTGA+TGG + chr7_4:19819532-19819551 Msa1143910:intron 40.0%
TGCTTACTTTGCAAGTTTGG+AGG + chr7_4:19819569-19819588 Msa1143910:intron 40.0%
GCTTACTTTGCAAGTTTGGA+GGG + chr7_4:19819570-19819589 Msa1143910:intron 40.0%
CTTACTTTGCAAGTTTGGAG+GGG + chr7_4:19819571-19819590 Msa1143910:intron 40.0%
AGTCTCCCAACTTGAATATG+GGG + chr7_4:19819640-19819659 Msa1143910:intron 40.0%
TCAGGAGACAAAACCAACTA+CGG - chr7_4:19819921-19819940 None:intergenic 40.0%
!!! AGTTGGTTTTGTCTCCTGAT+AGG + chr7_4:19819922-19819941 Msa1143910:intron 40.0%
TGCAAAGTGAAGGATTGTTC+TGG - chr7_4:19820137-19820156 None:intergenic 40.0%
CTTGCCTTCAATTCTAATCG+AGG - chr7_4:19820161-19820180 None:intergenic 40.0%
CTCGATTAGAATTGAAGGCA+AGG + chr7_4:19820159-19820178 Msa1143910:intron 40.0%
GCAAGGATGTAACCATTTGT+TGG + chr7_4:19820176-19820195 Msa1143910:intron 40.0%
!! ACAGTAGTTGGTAGCATGAA+TGG - chr7_4:19820332-19820351 None:intergenic 40.0%
!! TGCTTTGGAATCACAGTAGT+TGG - chr7_4:19820344-19820363 None:intergenic 40.0%
! TGTGACATTTTTGCCTGTAC+AGG + chr7_4:19820372-19820391 Msa1143910:intron 40.0%
ATAACAAGCTTCACCTGTAC+AGG - chr7_4:19820388-19820407 None:intergenic 40.0%
ATGAAACTCTTGCGTGATTC+TGG + chr7_4:19820406-19820425 Msa1143910:CDS 40.0%
CAGATATTCCATCCACCCAA+TGG + chr7_4:19816504-19816523 Msa1143910:CDS 45.0%
! AAGAGCACATGCATCCCATT+GGG - chr7_4:19816522-19816541 None:intergenic 45.0%
CTTCCGTTAAGGAAAAGGGA+TGG + chr7_4:19816618-19816637 Msa1143910:CDS 45.0%
! GGTCCATCCCTTTTCCTTAA+CGG - chr7_4:19816624-19816643 None:intergenic 45.0%
GAATATCCTTAGCGACGATG+TGG - chr7_4:19816652-19816671 None:intergenic 45.0%
GAATGGGTCTTGAGATAGAG+AGG - chr7_4:19816698-19816717 None:intergenic 45.0%
GGGACACAGGATTGTAACTT+AGG - chr7_4:19816794-19816813 None:intergenic 45.0%
ACGAAGTAAGATCCTTGGAC+CGG - chr7_4:19816831-19816850 None:intergenic 45.0%
AGAGGGAAAAGTGACATGGA+AGG - chr7_4:19816933-19816952 None:intergenic 45.0%
TTATGCCACTCGCTTTCAGA+GGG - chr7_4:19816950-19816969 None:intergenic 45.0%
TTTATGCCACTCGCTTTCAG+AGG - chr7_4:19816951-19816970 None:intergenic 45.0%
GGATTGGAATGCAGTATCAC+TGG + chr7_4:19816996-19817015 Msa1143910:CDS 45.0%
TTGATTATGAAACGCCTCCG+CGG + chr7_4:19817121-19817140 Msa1143910:CDS 45.0%
! CCTTTATTTCATAACCGCGG+AGG - chr7_4:19817138-19817157 None:intergenic 45.0%
CCTCCGCGGTTATGAAATAA+AGG + chr7_4:19817135-19817154 Msa1143910:CDS 45.0%
TTCTGATATATCCAACCCCG+TGG - chr7_4:19817358-19817377 None:intergenic 45.0%
! TGTCAGTGGAAAAAGTGCAC+TGG - chr7_4:19817383-19817402 None:intergenic 45.0%
CTGTCAGAGAGGTAAACATC+AGG - chr7_4:19817783-19817802 None:intergenic 45.0%
AAACAAACCAAACAGGCCCT+TGG + chr7_4:19817984-19818003 Msa1143910:intron 45.0%
AACAAACCAAACAGGCCCTT+GGG + chr7_4:19817985-19818004 Msa1143910:intron 45.0%
TGTATTGGAAGGCAAAGCAC+TGG + chr7_4:19818055-19818074 Msa1143910:intron 45.0%
! GTATTGGAAGGCAAAGCACT+GGG + chr7_4:19818056-19818075 Msa1143910:intron 45.0%
!! GCTACTGGTCTTTGACAGAT+GGG + chr7_4:19818195-19818214 Msa1143910:intron 45.0%
!! CTACTGGTCTTTGACAGATG+GGG + chr7_4:19818196-19818215 Msa1143910:intron 45.0%
GACAATGAGGAACTAGTAGC+AGG + chr7_4:19818298-19818317 Msa1143910:CDS 45.0%
GCAGGTGCCCTAAATCTTAT+CGG + chr7_4:19818316-19818335 Msa1143910:CDS 45.0%
! ATACTTTGTTTGGGCGCCTA+TGG + chr7_4:19818344-19818363 Msa1143910:CDS 45.0%
! TACTTTGTTTGGGCGCCTAT+GGG + chr7_4:19818345-19818364 Msa1143910:CDS 45.0%
GAATCGAACCTGAGACCTTA+AGG + chr7_4:19818639-19818658 Msa1143910:intron 45.0%
!!! AGCACACTCCTTTTTCAGTG+TGG + chr7_4:19818665-19818684 Msa1143910:intron 45.0%
TTCTCTTCAGTTCCACCAAG+TGG + chr7_4:19818762-19818781 Msa1143910:intron 45.0%
GACCCTGTGATTTCTGTCAA+AGG + chr7_4:19818943-19818962 Msa1143910:intron 45.0%
GGCCTTTGACAGAAATCACA+GGG - chr7_4:19818948-19818967 None:intergenic 45.0%
AGGCCTTTGACAGAAATCAC+AGG - chr7_4:19818949-19818968 None:intergenic 45.0%
GGTGAACATAAGATTGAGCG+TGG + chr7_4:19819076-19819095 Msa1143910:CDS 45.0%
TGGCAGCTATATGTTGTCAC+TGG - chr7_4:19819109-19819128 None:intergenic 45.0%
TCTAGATCTTCCTCTGCCTT+TGG + chr7_4:19819312-19819331 Msa1143910:intron 45.0%
GAGGATAGTCAGATCACCAA+AGG - chr7_4:19819331-19819350 None:intergenic 45.0%
GAGAGTAGATCATCAGATGG+AGG - chr7_4:19819350-19819369 None:intergenic 45.0%
!! ACTAAGTGGGGTTGGCTATA+TGG - chr7_4:19819503-19819522 None:intergenic 45.0%
ATATAGCCAACCCCACTTAG+TGG + chr7_4:19819502-19819521 Msa1143910:intron 45.0%
TATAGCCAACCCCACTTAGT+GGG + chr7_4:19819503-19819522 Msa1143910:intron 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG - chr7_4:19819515-19819534 None:intergenic 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG - chr7_4:19819516-19819535 None:intergenic 45.0%
TGGGCATAAGGAAGGAAGTA+AGG + chr7_4:19819600-19819619 Msa1143910:intron 45.0%
GGGCATAAGGAAGGAAGTAA+GGG + chr7_4:19819601-19819620 Msa1143910:intron 45.0%
GTTTGTGAGTTTGGAGGGTA+GGG - chr7_4:19819894-19819913 None:intergenic 45.0%
TGTTTGTGAGTTTGGAGGGT+AGG - chr7_4:19819895-19819914 None:intergenic 45.0%
GCTCTGTTTGTGAGTTTGGA+GGG - chr7_4:19819899-19819918 None:intergenic 45.0%
TACGGCTCTGTTTGTGAGTT+TGG - chr7_4:19819903-19819922 None:intergenic 45.0%
TAATCGAGGCTGCAAAGTGA+AGG - chr7_4:19820147-19820166 None:intergenic 45.0%
GCAGCCTCGATTAGAATTGA+AGG + chr7_4:19820154-19820173 Msa1143910:intron 45.0%
GATTCTGGTCCTTTCAAGGA+AGG + chr7_4:19820421-19820440 Msa1143910:CDS 45.0%
TACAGGACACCTTCCTTGAA+AGG - chr7_4:19820433-19820452 None:intergenic 45.0%
!!! ATTATTTATTATTTACATTT+TGG + chr7_4:19818464-19818483 Msa1143910:intron 5.0%
! CAAGAGCACATGCATCCCAT+TGG - chr7_4:19816523-19816542 None:intergenic 50.0%
GCATGTGCTCTTGATGCTAC+AGG + chr7_4:19816530-19816549 Msa1143910:CDS 50.0%
TGTGCTCTTGATGCTACAGG+AGG + chr7_4:19816533-19816552 Msa1143910:CDS 50.0%
!! CTTTTCCCTCTGAAAGCGAG+TGG + chr7_4:19816942-19816961 Msa1143910:CDS 50.0%
CTCAACAAGGTTTCCTCCCA+AGG + chr7_4:19816975-19816994 Msa1143910:CDS 50.0%
CAAGGTTTCCTCCCAAGGAT+TGG + chr7_4:19816980-19816999 Msa1143910:CDS 50.0%
ACTGCATTCCAATCCTTGGG+AGG - chr7_4:19816991-19817010 None:intergenic 50.0%
! GATACGACAAGAGCGCAAGA+AGG + chr7_4:19817084-19817103 Msa1143910:CDS 50.0%
TCATAACCCAAGGGCCTGTT+TGG - chr7_4:19817994-19818013 None:intergenic 50.0%
!! GGCTACTGGTCTTTGACAGA+TGG + chr7_4:19818194-19818213 Msa1143910:intron 50.0%
GGTGCCCTAAATCTTATCGG+AGG + chr7_4:19818319-19818338 Msa1143910:CDS 50.0%
! ACTTTGTTTGGGCGCCTATG+GGG + chr7_4:19818346-19818365 Msa1143910:CDS 50.0%
TTTGTGGATGACACCCCCAT+AGG - chr7_4:19818363-19818382 None:intergenic 50.0%
TCTCAGGTTCGATTCTCCTC+GGG - chr7_4:19818634-19818653 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCCT+CGG - chr7_4:19818635-19818654 None:intergenic 50.0%
TCGAACCTGAGACCTTAAGG+AGG + chr7_4:19818642-19818661 Msa1143910:intron 50.0%
! AAGGAGTGTGCTCCTCCTTA+AGG - chr7_4:19818657-19818676 None:intergenic 50.0%
TCTTCAGTTCCACCAAGTGG+CGG + chr7_4:19818765-19818784 Msa1143910:intron 50.0%
! ACTTTAGTTCCGCCACTTGG+TGG - chr7_4:19818777-19818796 None:intergenic 50.0%
GACAGAAATCACAGGGTCAC+AGG - chr7_4:19818941-19818960 None:intergenic 50.0%
AACAGTAGAAGCAGGAGCTC+AGG + chr7_4:19819054-19819073 Msa1143910:CDS 50.0%
ACAGTAGAAGCAGGAGCTCA+GGG + chr7_4:19819055-19819074 Msa1143910:CDS 50.0%
TTCTCAGGTATGGTGCAGCA+GGG + chr7_4:19819186-19819205 Msa1143910:intron 50.0%
AGTCAGATCACCAAAGGCAG+AGG - chr7_4:19819325-19819344 None:intergenic 50.0%
! CTTTTCCCACTAAGTGGGGT+TGG - chr7_4:19819511-19819530 None:intergenic 50.0%
CAACCCCACTTAGTGGGAAA+AGG + chr7_4:19819509-19819528 Msa1143910:intron 50.0%
! GCAAGCCTTTTCCCACTAAG+TGG - chr7_4:19819517-19819536 None:intergenic 50.0%
ACTTTGCAAGTTTGGAGGGG+AGG + chr7_4:19819574-19819593 Msa1143910:intron 50.0%
AAGTTTGGAGGGGAGGCTTT+GGG + chr7_4:19819581-19819600 Msa1143910:intron 50.0%
GGCTCTGTTTGTGAGTTTGG+AGG - chr7_4:19819900-19819919 None:intergenic 50.0%
CTCACAAACAGAGCCGTAGT+TGG + chr7_4:19819905-19819924 Msa1143910:intron 50.0%
ACTCACAACAGTTCCCAGCT+TGG - chr7_4:19819969-19819988 None:intergenic 50.0%
TGGGAACTGTTGTGAGTACC+AGG + chr7_4:19819972-19819991 Msa1143910:intron 50.0%
GCGTGATTCTGGTCCTTTCA+AGG + chr7_4:19820417-19820436 Msa1143910:CDS 50.0%
GTGATGGCAGCAGTAGCGAT+AGG + chr7_4:19816215-19816234 Msa1143910:exon 55.0%
CAGCAGTAGCGATAGGAGTG+AGG + chr7_4:19816222-19816241 Msa1143910:CDS 55.0%
CATGCATCCCATTGGGTGGA+TGG - chr7_4:19816515-19816534 None:intergenic 55.0%
AGCACATGCATCCCATTGGG+TGG - chr7_4:19816519-19816538 None:intergenic 55.0%
CTTAGCGACGATGTGGTGTG+GGG - chr7_4:19816645-19816664 None:intergenic 55.0%
CCTTAGCGACGATGTGGTGT+GGG - chr7_4:19816646-19816665 None:intergenic 55.0%
TCCTTAGCGACGATGTGGTG+TGG - chr7_4:19816647-19816666 None:intergenic 55.0%
AGATCCTTGGACCGGTGACA+GGG - chr7_4:19816823-19816842 None:intergenic 55.0%
AAGATCCTTGGACCGGTGAC+AGG - chr7_4:19816824-19816843 None:intergenic 55.0%
GGGTACTCCTTTCCTGACGA+GGG + chr7_4:19818216-19818235 Msa1143910:CDS 55.0%
! CTTTGTTTGGGCGCCTATGG+GGG + chr7_4:19818347-19818366 Msa1143910:CDS 55.0%
! ATTCTCCTCGGGGCCGATTT+GGG - chr7_4:19818623-19818642 None:intergenic 55.0%
CTCAGGTTCGATTCTCCTCG+GGG - chr7_4:19818633-19818652 None:intergenic 55.0%
GTGCTCCTCCTTAAGGTCTC+AGG - chr7_4:19818650-19818669 None:intergenic 55.0%
CTTCTCAGGTATGGTGCAGC+AGG + chr7_4:19819185-19819204 Msa1143910:intron 55.0%
CAAGTTTGGAGGGGAGGCTT+TGG + chr7_4:19819580-19819599 Msa1143910:intron 55.0%
!! GGAGGCTTTGGGCATAAGGA+AGG + chr7_4:19819592-19819611 Msa1143910:intron 55.0%
! CTTTGGGGGGAAGAGAGTAG+GGG - chr7_4:19819867-19819886 None:intergenic 55.0%
!! GCTTTGGGGGGAAGAGAGTA+GGG - chr7_4:19819868-19819887 None:intergenic 55.0%
GTGAGTTTGGAGGGTAGGGA+GGG - chr7_4:19819890-19819909 None:intergenic 55.0%
TGTGAGTTTGGAGGGTAGGG+AGG - chr7_4:19819891-19819910 None:intergenic 55.0%
TTGCAACGTGGCGAGGAGTG+AGG + chr7_4:19816190-19816209 Msa1143910:five_prime_UTR 60.0%
TGCAACGTGGCGAGGAGTGA+GGG + chr7_4:19816191-19816210 Msa1143910:five_prime_UTR 60.0%
CCCACACCACATCGTCGCTA+AGG + chr7_4:19816643-19816662 Msa1143910:CDS 60.0%
GATCCTTGGACCGGTGACAG+GGG - chr7_4:19816822-19816841 None:intergenic 60.0%
! GGGGTACTCCTTTCCTGACG+AGG + chr7_4:19818215-19818234 Msa1143910:CDS 60.0%
GATTCTCCTCGGGGCCGATT+TGG - chr7_4:19818624-19818643 None:intergenic 60.0%
!! GAGGGGAGGCTTTGGGCATA+AGG + chr7_4:19819588-19819607 Msa1143910:intron 60.0%
!! GGCTTTGGGGGGAAGAGAGT+AGG - chr7_4:19819869-19819888 None:intergenic 60.0%
TGGAGGGTAGGGAGGGCTTT+GGG - chr7_4:19819883-19819902 None:intergenic 60.0%
TTGGAGGGTAGGGAGGGCTT+TGG - chr7_4:19819884-19819903 None:intergenic 60.0%
GCAACGTGGCGAGGAGTGAG+GGG + chr7_4:19816192-19816211 Msa1143910:five_prime_UTR 65.0%
CAACGTGGCGAGGAGTGAGG+GGG + chr7_4:19816193-19816212 Msa1143910:five_prime_UTR 65.0%
GACAGGGGTGAAGGGGACAC+AGG - chr7_4:19816807-19816826 None:intergenic 65.0%
GTCCCCTTCACCCCTGTCAC+CGG + chr7_4:19816809-19816828 Msa1143910:CDS 65.0%
GACCGGTGACAGGGGTGAAG+GGG - chr7_4:19816814-19816833 None:intergenic 65.0%
GGACCGGTGACAGGGGTGAA+GGG - chr7_4:19816815-19816834 None:intergenic 65.0%
TGGACCGGTGACAGGGGTGA+AGG - chr7_4:19816816-19816835 None:intergenic 65.0%
TCACCCCTGTCACCGGTCCA+AGG + chr7_4:19816816-19816835 Msa1143910:CDS 65.0%
!! TCCTCGGGGCCGATTTGGGT+GGG - chr7_4:19818619-19818638 None:intergenic 65.0%
!! AGGGTAGGGAGGGCTTTGGG+GGG - chr7_4:19819880-19819899 None:intergenic 65.0%
! GAGGGTAGGGAGGGCTTTGG+GGG - chr7_4:19819881-19819900 None:intergenic 65.0%
GGAGGGTAGGGAGGGCTTTG+GGG - chr7_4:19819882-19819901 None:intergenic 65.0%
GGCGAGGAGTGAGGGGGTGA+TGG + chr7_4:19816199-19816218 Msa1143910:exon 70.0%
!! CTCCTCGGGGCCGATTTGGG+TGG - chr7_4:19818620-19818639 None:intergenic 70.0%
GCCCACCCAAATCGGCCCCG+AGG + chr7_4:19818615-19818634 Msa1143910:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 19816186 19820694 19816186 ID=Msa1143910;Name=Msa1143910
chr7_4 mRNA 19816186 19820694 19816186 ID=Msa1143910-mRNA-1;Parent=Msa1143910;Name=Msa1143910-mRNA-1;_AED=0.09;_eAED=0.09;_QI=32|1|1|1|1|1|5|241|477
chr7_4 exon 19816186 19817156 19816186 ID=Msa1143910-mRNA-1:exon:4585;Parent=Msa1143910-mRNA-1
chr7_4 exon 19818066 19818118 19818066 ID=Msa1143910-mRNA-1:exon:4586;Parent=Msa1143910-mRNA-1
chr7_4 exon 19818213 19818423 19818213 ID=Msa1143910-mRNA-1:exon:4587;Parent=Msa1143910-mRNA-1
chr7_4 exon 19819022 19819192 19819022 ID=Msa1143910-mRNA-1:exon:4588;Parent=Msa1143910-mRNA-1
chr7_4 exon 19820394 19820694 19820394 ID=Msa1143910-mRNA-1:exon:4589;Parent=Msa1143910-mRNA-1
chr7_4 five_prime_UTR 19816186 19816217 19816186 ID=Msa1143910-mRNA-1:five_prime_utr;Parent=Msa1143910-mRNA-1
chr7_4 CDS 19816218 19817156 19816218 ID=Msa1143910-mRNA-1:cds;Parent=Msa1143910-mRNA-1
chr7_4 CDS 19818066 19818118 19818066 ID=Msa1143910-mRNA-1:cds;Parent=Msa1143910-mRNA-1
chr7_4 CDS 19818213 19818423 19818213 ID=Msa1143910-mRNA-1:cds;Parent=Msa1143910-mRNA-1
chr7_4 CDS 19819022 19819192 19819022 ID=Msa1143910-mRNA-1:cds;Parent=Msa1143910-mRNA-1
chr7_4 CDS 19820394 19820453 19820394 ID=Msa1143910-mRNA-1:cds;Parent=Msa1143910-mRNA-1
chr7_4 three_prime_UTR 19820454 19820694 19820454 ID=Msa1143910-mRNA-1:three_prime_utr;Parent=Msa1143910-mRNA-1
Gene Sequence

>Msa1143910

ATGGCAGCAGTAGCGATAGGAGTGAGGTGCTGCTGCTCATTGTCGTTTCCGTCTCATCATCGCAAATCTTCTTCTTCTGATTATTACTATTATTACAGAAGAAGAAGTAGAATCAATGCTTCTTCATTGTTTTGGGGATCTTCTAAGGACAACAACAAACATAATAACATTTCTTCTTCTTCTTCTTCTTCGCATCAGCAACAATTCAGCTTCAATGTTACCAGCACAACAGAATCTGAAGAAGAAAAAGATAAGATTATTACTGTTTCTTTTGTATCTTCAATTTCAGATATTCCATCCACCCAATGGGATGCATGTGCTCTTGATGCTACAGGAGGACCAGACAAGTTCAATCCATTTCTATCTCATGCTTTTCTATCATCTTTAGAACTATCCTCTTCTTCCGTTAAGGAAAAGGGATGGACCCCACACCACATCGTCGCTAAGGATATTCATAATCATATTCTCGCTGTTGTTCCTCTCTATCTCAAGACCCATTCTTATGGTGAATTCGTTTTTGATCATTCTTGGGCCAATGCTTACTCTCATTTTTATGGTTCCAATTCTTATTATCCTAAGTTACAATCCTGTGTCCCCTTCACCCCTGTCACCGGTCCAAGGATCTTACTTCGTAACACTTCTTTCAAACATCATGTTTTTGACTTCATTGTTTCTGCTATCAAGGATCTCACTGCCATGTCTCAACTTTCTTCCTTCCATGTCACTTTTCCCTCTGAAAGCGAGTGGCATAAATTCACTCAACAAGGTTTCCTCCCAAGGATTGGAATGCAGTATCACTGGACCAACCGCAACTATACCAATTTTGATGACTTCTTGATGGACTTGAAGCATAATAAAAGGAAAAAGATACGACAAGAGCGCAAGAAGGTTGCAGCTCAGAACTTGATTATGAAACGCCTCCGCGGTTATGAAATAAAGGCAAAGCACTGGGATTCCTTCTACACCTTTTACAGGAACACAACTGATAACAAATGGGGTACTCCTTTCCTGACGAGGGAATTTTTTCATGAGATGGGATCAAAAATGGGAGATCAAGTACTACTTATTGTTGCTGAAGACAATGAGGAACTAGTAGCAGGTGCCCTAAATCTTATCGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCATCCACAAACTTACTATCCATTTTTGCATTTTGAAGCATGTTATTATCAGGCAATTGAAGCAGCGATTGAACTCAATCTTAAAACAGTAGAAGCAGGAGCTCAGGGTGAACATAAGATTGAGCGTGGATATCTTCCAGTGACAACATATAGCTGCCATTACCTTATTGATGAAGATTTTAGGAAAGCTATAGAAGATTTTTTAGTTCGTGAATCTTCTCAGGTGAAGCTTGTTATGAAACTCTTGCGTGATTCTGGTCCTTTCAAGGAAGGTGTCCTGTAG

Protein sequence

>Msa1143910

MAAVAIGVRCCCSLSFPSHHRKSSSSDYYYYYRRRSRINASSLFWGSSKDNNKHNNISSSSSSSHQQQFSFNVTSTTESEEEKDKIITVSFVSSISDIPSTQWDACALDATGGPDKFNPFLSHAFLSSLELSSSSVKEKGWTPHHIVAKDIHNHILAVVPLYLKTHSYGEFVFDHSWANAYSHFYGSNSYYPKLQSCVPFTPVTGPRILLRNTSFKHHVFDFIVSAIKDLTAMSQLSSFHVTFPSESEWHKFTQQGFLPRIGMQYHWTNRNYTNFDDFLMDLKHNKRKKIRQERKKVAAQNLIMKRLRGYEIKAKHWDSFYTFYRNTTDNKWGTPFLTREFFHEMGSKMGDQVLLIVAEDNEELVAGALNLIGGDTLFGRLWGCHPQTYYPFLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIERGYLPVTTYSCHYLIDEDFRKAIEDFLVRESSQVKLVMKLLRDSGPFKEGVL*