AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0089390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089390 MtrunA17_Chr1g0207891 98.280 407 5 2 1 407 1 405 0.0 822
Msa0089390 MtrunA17_Chr5g0438751 40.053 377 208 5 29 399 36 400 4.60e-105 316
Msa0089390 MtrunA17_Chr7g0250081 40.691 376 199 6 35 400 43 404 9.50e-102 308
Msa0089390 MtrunA17_Chr7g0225611 39.314 379 217 4 29 401 41 412 7.83e-101 305
Msa0089390 MtrunA17_Chr6g0462811 39.623 371 169 6 35 400 44 364 4.38e-89 274
Msa0089390 MtrunA17_Chr3g0120021 36.000 425 215 7 23 400 31 445 2.15e-86 270
Msa0089390 MtrunA17_Chr7g0250091 40.984 305 157 4 101 399 64 351 3.34e-78 245
Msa0089390 MtrunA17_Chr6g0462831 41.132 265 144 6 144 400 3 263 6.70e-59 192
Msa0089390 MtrunA17_Chr3g0120041 44.565 184 92 1 35 218 47 220 5.08e-51 172
Msa0089390 MtrunA17_Chr3g0119931 42.697 178 92 2 35 212 43 210 3.31e-48 164
Msa0089390 MtrunA17_Chr6g0459361 36.816 201 120 3 19 218 30 224 1.27e-44 155
Msa0089390 MtrunA17_Chr6g0459381 36.607 224 130 4 1 218 7 224 1.85e-44 155
Msa0089390 MtrunA17_Chr6g0459401 39.459 185 105 3 35 218 46 224 7.35e-44 153
Msa0089390 MtrunA17_Chr6g0459421 39.459 185 105 3 35 218 46 224 8.17e-44 153
Msa0089390 MtrunA17_Chr3g0120031 43.636 165 85 4 244 400 8 172 2.80e-39 138
Msa0089390 MtrunA17_Chr3g0119941 47.101 138 68 3 268 400 30 167 1.11e-36 131
Msa0089390 MtrunA17_Chr6g0459391 36.486 148 88 2 258 399 25 172 2.92e-31 117
Msa0089390 MtrunA17_Chr5g0394731 36.364 132 79 1 111 242 20 146 2.32e-28 108
Msa0089390 MtrunA17_Chr6g0459411 34.559 136 83 2 270 399 5 140 6.71e-24 96.7
Msa0089390 MtrunA17_Chr6g0459431 33.824 136 84 2 270 399 5 140 1.13e-22 93.2
Msa0089390 MtrunA17_Chr6g0459371 34.483 87 52 1 318 399 1 87 6.24e-16 72.8
Msa0089390 MtrunA17_Chr5g0421521 90.625 32 3 0 269 300 900 931 9.57e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089390 AT2G15230.1 63.271 373 126 1 34 406 31 392 0.0 511
Msa0089390 AT5G14180.1 36.816 402 234 7 6 399 26 415 4.61e-95 291
Msa0089390 AT5G14180.4 40.065 307 178 3 99 399 9 315 3.03e-82 255
Msa0089390 AT5G14180.2 40.000 305 177 3 101 399 2 306 4.06e-82 254
Msa0089390 AT5G14180.3 36.913 298 173 5 6 300 26 311 8.28e-68 218
Msa0089390 AT5G14180.5 35.448 268 158 5 6 270 26 281 1.38e-54 183

Find 133 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGGTGAAACAGAATT+TGG 0.182173 1_2:+70862899 Msa0089390:five_prime_UTR
CAGAGAGTTGGTTGTTGTTT+GGG 0.186644 1_2:-70863009 None:intergenic
TTGCCTTTGTTGATGGCTTA+TGG 0.191042 1_2:+70868138 Msa0089390:CDS
TTATATTACATTCATCTTAA+TGG 0.199327 1_2:-70868364 None:intergenic
CAGATCATTGCCTTTGTTGA+TGG 0.268391 1_2:+70868131 Msa0089390:CDS
ACCTTCTCCAAGTACGATTA+TGG 0.280197 1_2:+70868042 Msa0089390:CDS
ACAAAGGATGGTTTCTTGTT+AGG 0.282718 1_2:+70863193 Msa0089390:CDS
ACAGAGAGTTGGTTGTTGTT+TGG 0.284882 1_2:-70863010 None:intergenic
TGCCTTTGTTGATGGCTTAT+GGG 0.286118 1_2:+70868139 Msa0089390:CDS
ATATGATCCAAGTATGAAAT+TGG 0.303318 1_2:-70865541 None:intergenic
TTCACCAATCCTATTATTGA+TGG 0.307707 1_2:-70862888 None:intergenic
CCTCTTATCATTCAATGGTT+TGG 0.307944 1_2:-70868542 None:intergenic
GCTTCTCCATGGCCTATTCA+TGG 0.309670 1_2:+70863303 Msa0089390:CDS
CCATCATCACCATCAATAAT+AGG 0.311385 1_2:+70862879 Msa0089390:five_prime_UTR
ATGCGGCTAAGGTCAAATTT+TGG 0.319645 1_2:-70868105 None:intergenic
CCAAACCATTGAATGATAAG+AGG 0.331508 1_2:+70868542 Msa0089390:three_prime_UTR
TTGGTTTGCTACTAATTGAT+TGG 0.341793 1_2:+70868485 Msa0089390:three_prime_UTR
TCTGTCTCCAATTTCATACT+TGG 0.350785 1_2:+70865534 Msa0089390:CDS
TCCCTCCAACGCGCCTCAAT+TGG 0.356861 1_2:-70862799 None:intergenic
GGATTGGTGAAACAGAATTT+GGG 0.356943 1_2:+70862900 Msa0089390:five_prime_UTR
TTGAAGTTAAAACCATTGTT+TGG 0.360541 1_2:+70868508 Msa0089390:three_prime_UTR
ATCAGTTTCTTCAAGTCAAT+GGG 0.364667 1_2:+70868309 Msa0089390:CDS
CATCAGTTTCTTCAAGTCAA+TGG 0.364835 1_2:+70868308 Msa0089390:CDS
AACTCAAAGTTATTTGTAGT+TGG 0.368834 1_2:+70865346 Msa0089390:CDS
GGATCATATTAGTGCACCTT+TGG 0.375065 1_2:+70865555 Msa0089390:CDS
TGCACCTTTGGTACTAAGAA+TGG 0.380394 1_2:+70865567 Msa0089390:CDS
CACAGAAGTATTTACTGTCT+TGG 0.380650 1_2:+70868466 Msa0089390:three_prime_UTR
GCAAAGAAAATAGTATATAA+AGG 0.402286 1_2:-70868641 None:intergenic
ACTCAAAGTTATTTGTAGTT+GGG 0.404963 1_2:+70865347 Msa0089390:CDS
TGTAATCTAATTTATACTCT+CGG 0.413411 1_2:-70862839 None:intergenic
ATCTTTATCAGAGAAGAATA+AGG 0.417364 1_2:+70864181 Msa0089390:CDS
ACATAAGGAAATCAAGAGAT+TGG 0.417842 1_2:-70865857 None:intergenic
GACATGCTGTCATCCATTAC+AGG 0.418206 1_2:+70865901 Msa0089390:CDS
GTGGTTTATCTTGAAAACTA+TGG 0.418535 1_2:+70868231 Msa0089390:CDS
AGTAAGTAGTAACCATGAAT+AGG 0.420033 1_2:-70863315 None:intergenic
AAATACACCAGAACAATCAT+TGG 0.421081 1_2:+70864082 Msa0089390:CDS
ACCACCTAACAGTTAGTATA+GGG 0.423146 1_2:+70862754 Msa0089390:five_prime_UTR
AAGCTTTCCATAATCGTACT+TGG 0.430219 1_2:-70868049 None:intergenic
GTAATCTAATTTATACTCTC+GGG 0.443767 1_2:-70862838 None:intergenic
GGAAAAGATGCACATTGATC+AGG 0.447013 1_2:+70865588 Msa0089390:CDS
GGGTGCGCTGCCGCCGTCGA+AGG 0.448632 1_2:-70862986 None:intergenic
CATCAACAAAGGCAATGATC+TGG 0.449214 1_2:-70868130 None:intergenic
GGCTTCATCCTTGCGGATCA+AGG 0.449610 1_2:+70864104 Msa0089390:CDS
TTCATCAGCTGAATTTCAAA+AGG 0.450695 1_2:+70865714 Msa0089390:CDS
AGTGATATATACTCACAGTA+TGG 0.454131 1_2:-70868669 None:intergenic
GTTTCCGAAGGATAAGAGTA+TGG 0.460626 1_2:-70862953 None:intergenic
AACCACCTAACAGTTAGTAT+AGG 0.469571 1_2:+70862753 Msa0089390:five_prime_UTR
GACTTGAAGAAACTGATGAT+AGG 0.472607 1_2:-70868303 None:intergenic
AGAGAGTTGGTTGTTGTTTG+GGG 0.478775 1_2:-70863008 None:intergenic
ATGAAGCCCAATGATTGTTC+TGG 0.479529 1_2:-70864089 None:intergenic
AGGCCATGGAGAAGCAGAAC+CGG 0.486022 1_2:-70863295 None:intergenic
CGCCAATTGAGGCGCGTTGG+AGG 0.487082 1_2:+70862797 Msa0089390:five_prime_UTR
GCCTTTGTTGATGGCTTATG+GGG 0.492263 1_2:+70868140 Msa0089390:CDS
ATGATCTGGGTATGCGGCTA+AGG 0.493826 1_2:-70868116 None:intergenic
ACCACCCTATACTAACTGTT+AGG 0.495556 1_2:-70862758 None:intergenic
TCATTTCCGCAAGATCGTAC+AGG 0.501400 1_2:-70865300 None:intergenic
ATTTGTAGTTGGGCATTCAC+AGG 0.502438 1_2:+70865357 Msa0089390:CDS
ATCACCATCAATAATAGGAT+TGG 0.503513 1_2:+70862884 Msa0089390:five_prime_UTR
CATGGAACATACTCTGGAAA+AGG 0.507066 1_2:-70866970 None:intergenic
ATTGCCATACTCTTATCCTT+CGG 0.509142 1_2:+70862949 Msa0089390:CDS
CCTCCGGTTCTGCTTCTCCA+TGG 0.509579 1_2:+70863292 Msa0089390:CDS
ATTGAGGCGCGTTGGAGGGA+TGG 0.511191 1_2:+70862802 Msa0089390:five_prime_UTR
ATATACTCACAGTATGGTAA+TGG 0.514581 1_2:-70868663 None:intergenic
TTACTTTCAGATTGAAACAA+AGG 0.517112 1_2:+70863177 Msa0089390:intron
TCAACCGGATATAGTAGAAA+AGG 0.520659 1_2:+70865495 Msa0089390:CDS
TGTTCAGATGATTGCTACAA+TGG 0.521008 1_2:+70865688 Msa0089390:intron
TACAGAACACGCGCCAATTG+AGG 0.522614 1_2:+70862786 Msa0089390:five_prime_UTR
CCTATTATTGATGGTGATGA+TGG 0.523869 1_2:-70862879 None:intergenic
GTTCAGATGATTGCTACAAT+GGG 0.525033 1_2:+70865689 Msa0089390:intron
CTCTCAGTGAAGATGTAGAA+AGG 0.527326 1_2:+70868579 Msa0089390:three_prime_UTR
CAGTGAAGATGTAGAAAGGA+TGG 0.528452 1_2:+70868583 Msa0089390:three_prime_UTR
CTGATAAAGATTTATGTCCA+TGG 0.529374 1_2:-70864169 None:intergenic
TGAGAGACATGAACCTGTAA+TGG 0.530576 1_2:-70865914 None:intergenic
ACAACAACAACGAGGTCCTC+CGG 0.531545 1_2:+70863276 Msa0089390:CDS
TACTATATCCGGTTGAGTGA+AGG 0.532690 1_2:-70865488 None:intergenic
ATCAACAAAGGCAATGATCT+GGG 0.532780 1_2:-70868129 None:intergenic
AGAGTTGGTTGTTGTTTGGG+GGG 0.532934 1_2:-70863006 None:intergenic
ACTTGAAGAAACTGATGATA+GGG 0.535072 1_2:-70868302 None:intergenic
GCAGTTCCTTGAGTGTGTGC+TGG 0.538191 1_2:-70868194 None:intergenic
GCCAATTGAGGCGCGTTGGA+GGG 0.538477 1_2:+70862798 Msa0089390:five_prime_UTR
TCCATAATCGTACTTGGAGA+AGG 0.540057 1_2:-70868043 None:intergenic
AATACACCAGAACAATCATT+GGG 0.543527 1_2:+70864083 Msa0089390:CDS
TTACCCTTGCTCTGAATATG+TGG 0.550867 1_2:+70863056 Msa0089390:CDS
ATGAGTTCATCACAGAGAGT+TGG 0.551768 1_2:-70863021 None:intergenic
GAGAGTTGGTTGTTGTTTGG+GGG 0.553474 1_2:-70863007 None:intergenic
TTTCAGATTGAAACAAAGGA+TGG 0.556157 1_2:+70863181 Msa0089390:intron
ATTACATTCATCTTAATGGA+AGG 0.556575 1_2:-70868360 None:intergenic
CAAACCATTGAATGATAAGA+GGG 0.556879 1_2:+70868543 Msa0089390:three_prime_UTR
ACTTAGACGAGTATCACATA+AGG 0.561077 1_2:-70865872 None:intergenic
GGAGTGCACCACTGATATGA+AGG 0.565592 1_2:+70868604 Msa0089390:three_prime_UTR
CAAGACAGTAAATACTTCTG+TGG 0.566209 1_2:-70868465 None:intergenic
ACGCGCCAATTGAGGCGCGT+TGG 0.567288 1_2:+70862794 Msa0089390:five_prime_UTR
ATCATTGGGCTTCATCCTTG+CGG 0.568286 1_2:+70864097 Msa0089390:CDS
TAGATTCATTAAACATACAG+TGG 0.569806 1_2:+70868394 Msa0089390:three_prime_UTR
TAGTAACCATGAATAGGCCA+TGG 0.571896 1_2:-70863309 None:intergenic
TAAACCACCTCAGGTGTGGA+TGG 0.574032 1_2:-70868216 None:intergenic
CGTGGAACACGTTGGAGCCA+TGG 0.574865 1_2:+70864152 Msa0089390:CDS
CATTTCCGCAAGATCGTACA+GGG 0.575973 1_2:-70865299 None:intergenic
GATGAACTCATTCTTCCCGC+TGG 0.577409 1_2:+70863033 Msa0089390:CDS
AGTAATAACCTTCATATCAG+TGG 0.583808 1_2:-70868612 None:intergenic
ACTTGGAGAAGGTACCTTTG+CGG 0.586271 1_2:-70868032 None:intergenic
AATACCACATATTCAGAGCA+AGG 0.587448 1_2:-70863060 None:intergenic
AAGATAAACCACCTCAGGTG+TGG 0.587694 1_2:-70868220 None:intergenic
TCAGAGCAAGGGTAACCAGC+GGG 0.589366 1_2:-70863048 None:intergenic
ATTAGCCCTGTACGATCTTG+CGG 0.594612 1_2:+70865294 Msa0089390:CDS
GTATATATCACTAATTATTG+AGG 0.599896 1_2:+70868680 Msa0089390:three_prime_UTR
TTGCTTCAACGAGTCACGCG+TGG 0.604439 1_2:+70866895 Msa0089390:CDS
GATTGGTGAAACAGAATTTG+GGG 0.607741 1_2:+70862901 Msa0089390:five_prime_UTR
ACAATCAGGCAGGTGATGCA+TGG 0.608662 1_2:+70864054 Msa0089390:intron
AAGACAGTAAATACTTCTGT+GGG 0.608764 1_2:-70868464 None:intergenic
AACATCGCTCACTCCTTCGA+CGG 0.610140 1_2:+70862973 Msa0089390:CDS
ATCGCTCACTCCTTCGACGG+CGG 0.610445 1_2:+70862976 Msa0089390:CDS
TGATTTCCAGCACACACTCA+AGG 0.617911 1_2:+70868188 Msa0089390:CDS
ACCCTATACTAACTGTTAGG+TGG 0.624266 1_2:-70862755 None:intergenic
GGAACATACTCTGGAAAAGG+TGG 0.634034 1_2:-70866967 None:intergenic
ACTGCCATCCACACCTGAGG+TGG 0.635259 1_2:+70868212 Msa0089390:CDS
AAGGCAATGATCTGGGTATG+CGG 0.641163 1_2:-70868122 None:intergenic
CATCAAAACCTTGATCCGCA+AGG 0.641366 1_2:-70864112 None:intergenic
TTACAGACACAACATCAAAG+TGG 0.645873 1_2:-70868424 None:intergenic
AGACACAACATCAAAGTGGA+CGG 0.649083 1_2:-70868420 None:intergenic
TGTTCTCCAGTGATCCGCAA+AGG 0.657082 1_2:+70868018 Msa0089390:intron
ATACCACATATTCAGAGCAA+GGG 0.659010 1_2:-70863059 None:intergenic
ACCTAACAGTTAGTATAGGG+TGG 0.661356 1_2:+70862757 Msa0089390:five_prime_UTR
CCTTTGTTGATGGCTTATGG+GGG 0.663104 1_2:+70868141 Msa0089390:CDS
GGAGTGAGCGATGTTTCCGA+AGG 0.667016 1_2:-70862965 None:intergenic
GGAACTGCCATCCACACCTG+AGG 0.674091 1_2:+70868209 Msa0089390:CDS
ATTATTGATGGTGATGATGG+TGG 0.675186 1_2:-70862876 None:intergenic
TTCAGAGCAAGGGTAACCAG+CGG 0.686767 1_2:-70863049 None:intergenic
ATTGGTGAAACAGAATTTGG+GGG 0.689686 1_2:+70862902 Msa0089390:five_prime_UTR
CCATGGAGAAGCAGAACCGG+AGG 0.690082 1_2:-70863292 None:intergenic
TCAGTTTCTTCAAGTCAATG+GGG 0.699933 1_2:+70868310 Msa0089390:CDS
GAAATGTGCGTGGAACACGT+TGG 0.739556 1_2:+70864144 Msa0089390:CDS
GTTTGGGTAGGAAATGTGCG+TGG 0.748523 1_2:+70864134 Msa0089390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTACATCAATAAT+GGG - chr1_2:70866220-70866239 None:intergenic 10.0%
!!! TATATTTTTTACATCAATAA+TGG - chr1_2:70866221-70866240 None:intergenic 10.0%
!! ATTATTGATGTAAAAAATAT+AGG + chr1_2:70866220-70866239 Msa0089390:intron 10.0%
!!! AGAAAAAAACAATTTTATTT+AGG + chr1_2:70866607-70866626 Msa0089390:intron 10.0%
!! AATGAAAAGTTATTTATGTT+TGG - chr1_2:70863764-70863783 None:intergenic 15.0%
!!! AATTAGTTTCAAACTTTAAA+AGG - chr1_2:70863988-70864007 None:intergenic 15.0%
!!! TTCTTTTCAATTGTAAAATA+TGG + chr1_2:70864278-70864297 Msa0089390:intron 15.0%
!!! TCTTTTCAATTGTAAAATAT+GGG + chr1_2:70864279-70864298 Msa0089390:intron 15.0%
!!! TTTTATTTTGGTAAAAATGA+GGG - chr1_2:70865209-70865228 None:intergenic 15.0%
!! ATAAATTAATATATGTGTAG+CGG - chr1_2:70866255-70866274 None:intergenic 15.0%
!! ATGACATTAAATTAAATTAC+AGG + chr1_2:70866863-70866882 Msa0089390:intron 15.0%
!! TCTATTTATAAATTGCTAAA+AGG + chr1_2:70867857-70867876 Msa0089390:intron 15.0%
!! TTATATTACATTCATCTTAA+TGG - chr1_2:70868367-70868386 None:intergenic 15.0%
!! TGTAATCTAATTTATACTCT+CGG - chr1_2:70862842-70862861 None:intergenic 20.0%
!! AAGATATGAATTAGAAAGAA+GGG - chr1_2:70863118-70863137 None:intergenic 20.0%
!! AAAGATATGAATTAGAAAGA+AGG - chr1_2:70863119-70863138 None:intergenic 20.0%
!! CATAGTGTATTAGTATAATA+AGG + chr1_2:70863488-70863507 Msa0089390:intron 20.0%
!!! TCAATTTAGAATCATTTATG+AGG - chr1_2:70863663-70863682 None:intergenic 20.0%
!! TTAAAAATTCACTTTGTATG+CGG + chr1_2:70863888-70863907 Msa0089390:intron 20.0%
!!! ACTATATTCTGTCATTTTTT+AGG + chr1_2:70863919-70863938 Msa0089390:intron 20.0%
!!! CTATATTCTGTCATTTTTTA+GGG + chr1_2:70863920-70863939 Msa0089390:intron 20.0%
!!! TATATTCTGTCATTTTTTAG+GGG + chr1_2:70863921-70863940 Msa0089390:intron 20.0%
!!! AAATTCATTTTGCAATTTTG+TGG - chr1_2:70864355-70864374 None:intergenic 20.0%
!!! TAATATTTGTACAACCATTT+TGG + chr1_2:70864458-70864477 Msa0089390:intron 20.0%
!!! AATATTTGTACAACCATTTT+GGG + chr1_2:70864459-70864478 Msa0089390:intron 20.0%
!!! TACAAGTTCTAAATGTATTA+AGG + chr1_2:70864672-70864691 Msa0089390:intron 20.0%
!!! ACAAGTTCTAAATGTATTAA+GGG + chr1_2:70864673-70864692 Msa0089390:intron 20.0%
!!! TATATTTTTGAGTTTTGACA+CGG + chr1_2:70864759-70864778 Msa0089390:intron 20.0%
!!! TTTTTAGCTGTATATTGATA+AGG + chr1_2:70865061-70865080 Msa0089390:intron 20.0%
!!! TTTATTTTGGTAAAAATGAG+GGG - chr1_2:70865208-70865227 None:intergenic 20.0%
!!! GTTTTATTTTGGTAAAAATG+AGG - chr1_2:70865210-70865229 None:intergenic 20.0%
!!! ATTATGAGAAGAGTATTATT+TGG - chr1_2:70866050-70866069 None:intergenic 20.0%
!! GATAGTAGAAGAATAAATAA+AGG - chr1_2:70866382-70866401 None:intergenic 20.0%
!!! TTGAGAAATTTTGATCAATT+GGG - chr1_2:70866449-70866468 None:intergenic 20.0%
!!! CTCATTTTAATCTATAACTT+AGG + chr1_2:70866758-70866777 Msa0089390:intron 20.0%
!! ATTTAAAAGATATGCATTGT+CGG - chr1_2:70867502-70867521 None:intergenic 20.0%
!! GCAAAGAAAATAGTATATAA+AGG - chr1_2:70868644-70868663 None:intergenic 20.0%
!! GTATATATCACTAATTATTG+AGG + chr1_2:70868680-70868699 Msa0089390:three_prime_UTR 20.0%
! GTAATCTAATTTATACTCTC+GGG - chr1_2:70862841-70862860 None:intergenic 25.0%
! ATTAGAAAGAAGGGAAATAT+TGG - chr1_2:70863109-70863128 None:intergenic 25.0%
!!! TTTCTGTTTTTCTTGCTAAT+TGG + chr1_2:70863136-70863155 Msa0089390:intron 25.0%
! TTACTTTCAGATTGAAACAA+AGG + chr1_2:70863177-70863196 Msa0089390:intron 25.0%
! GGGTTTAACAATAAATTCAA+TGG - chr1_2:70863724-70863743 None:intergenic 25.0%
! TGGATATATTCATGTAAACA+GGG - chr1_2:70863744-70863763 None:intergenic 25.0%
! TTGGATATATTCATGTAAAC+AGG - chr1_2:70863745-70863764 None:intergenic 25.0%
! ATCTTTATCAGAGAAGAATA+AGG + chr1_2:70864181-70864200 Msa0089390:CDS 25.0%
! ATGTTATAGAACTCATTGAA+TGG + chr1_2:70864226-70864245 Msa0089390:intron 25.0%
!!! ACCTTTTTTTCTCTTCTTTT+GGG - chr1_2:70864597-70864616 None:intergenic 25.0%
!!! AACCTTTTTTTCTCTTCTTT+TGG - chr1_2:70864598-70864617 None:intergenic 25.0%
! CAAATAAGAAATGCTTCATT+CGG + chr1_2:70864991-70865010 Msa0089390:intron 25.0%
!!! CATACTCATCAGTTTTATTT+TGG - chr1_2:70865221-70865240 None:intergenic 25.0%
! AACTCAAAGTTATTTGTAGT+TGG + chr1_2:70865346-70865365 Msa0089390:CDS 25.0%
! ACTCAAAGTTATTTGTAGTT+GGG + chr1_2:70865347-70865366 Msa0089390:CDS 25.0%
!! ATTTTCCATAGCTTACATTT+TGG + chr1_2:70865423-70865442 Msa0089390:intron 25.0%
! ATATGATCCAAGTATGAAAT+TGG - chr1_2:70865544-70865563 None:intergenic 25.0%
! ATCAACATATGCAAAAGAAA+AGG - chr1_2:70865769-70865788 None:intergenic 25.0%
! TAAATAAAGGTCAGATACTA+TGG - chr1_2:70866369-70866388 None:intergenic 25.0%
!!! TGAGAAATTTTGATCAATTG+GGG - chr1_2:70866448-70866467 None:intergenic 25.0%
!!! GTTGAGAAATTTTGATCAAT+TGG - chr1_2:70866450-70866469 None:intergenic 25.0%
! ATATGTAACTCTTGTATCTA+CGG + chr1_2:70866472-70866491 Msa0089390:intron 25.0%
!!! AAACATTTTTTTCTCTCTCT+TGG - chr1_2:70866507-70866526 None:intergenic 25.0%
!!! AACAATTTTATTTAGGACAC+TGG + chr1_2:70866614-70866633 Msa0089390:intron 25.0%
! GTTATAGATTAAAATGAGAG+AGG - chr1_2:70866756-70866775 None:intergenic 25.0%
! AAGAAACCAATTAAAGATGA+TGG - chr1_2:70866998-70867017 None:intergenic 25.0%
! ACATTATCAAACATGATCAA+AGG - chr1_2:70867161-70867180 None:intergenic 25.0%
! ACGATATAGAATAAACAAAC+TGG - chr1_2:70867321-70867340 None:intergenic 25.0%
! TGTAAAACTAATTACTAAGG+TGG - chr1_2:70867355-70867374 None:intergenic 25.0%
! CAGTGTAAAACTAATTACTA+AGG - chr1_2:70867358-70867377 None:intergenic 25.0%
! TCAAGATGCAGTTATTAAAA+TGG + chr1_2:70867423-70867442 Msa0089390:intron 25.0%
! CAAGATGCAGTTATTAAAAT+GGG + chr1_2:70867424-70867443 Msa0089390:intron 25.0%
! AAGATGCAGTTATTAAAATG+GGG + chr1_2:70867425-70867444 Msa0089390:intron 25.0%
! ATCCTTACAAATATGTCTTT+AGG + chr1_2:70867520-70867539 Msa0089390:intron 25.0%
! TTTCCTATAATGTCATTACT+AGG + chr1_2:70867564-70867583 Msa0089390:intron 25.0%
!!! TTTTACTGTGTTATTTGCTT+TGG + chr1_2:70867903-70867922 Msa0089390:intron 25.0%
! CTTAAAAATCTGATAGAGTA+TGG + chr1_2:70868069-70868088 Msa0089390:CDS 25.0%
! ATTACATTCATCTTAATGGA+AGG - chr1_2:70868363-70868382 None:intergenic 25.0%
! TAGATTCATTAAACATACAG+TGG + chr1_2:70868394-70868413 Msa0089390:three_prime_UTR 25.0%
! TTGAAGTTAAAACCATTGTT+TGG + chr1_2:70868508-70868527 Msa0089390:three_prime_UTR 25.0%
!!! GAATCTATTTTTCCAAACAA+TGG - chr1_2:70868523-70868542 None:intergenic 25.0%
ATCACCATCAATAATAGGAT+TGG + chr1_2:70862884-70862903 Msa0089390:five_prime_UTR 30.0%
TTCACCAATCCTATTATTGA+TGG - chr1_2:70862891-70862910 None:intergenic 30.0%
TTTCAGATTGAAACAAAGGA+TGG + chr1_2:70863181-70863200 Msa0089390:intron 30.0%
AGTAAGTAGTAACCATGAAT+AGG - chr1_2:70863318-70863337 None:intergenic 30.0%
! ATATCTTGCTACTTCAATGT+GGG + chr1_2:70863516-70863535 Msa0089390:intron 30.0%
TAGAACCAAACATACACTAA+AGG - chr1_2:70863568-70863587 None:intergenic 30.0%
!!! TGTATGTTTGGTTCTACTTT+TGG + chr1_2:70863572-70863591 Msa0089390:intron 30.0%
!! GAATTTGTTATTGACCTGTT+TGG + chr1_2:70863623-70863642 Msa0089390:intron 30.0%
CAAAACTCTGCAAATATTAC+TGG - chr1_2:70863849-70863868 None:intergenic 30.0%
! CAGTAATATTTGCAGAGTTT+TGG + chr1_2:70863847-70863866 Msa0089390:intron 30.0%
! TTATGCCATTTGATACAATC+AGG + chr1_2:70864040-70864059 Msa0089390:intron 30.0%
AAATACACCAGAACAATCAT+TGG + chr1_2:70864082-70864101 Msa0089390:CDS 30.0%
AATACACCAGAACAATCATT+GGG + chr1_2:70864083-70864102 Msa0089390:CDS 30.0%
CTGATAAAGATTTATGTCCA+TGG - chr1_2:70864172-70864191 None:intergenic 30.0%
CAATGAGTTCTATAACATGA+AGG - chr1_2:70864224-70864243 None:intergenic 30.0%
! TACTTTTCTATACATAGCCA+AGG + chr1_2:70864324-70864343 Msa0089390:intron 30.0%
! ACTTTTCTATACATAGCCAA+GGG + chr1_2:70864325-70864344 Msa0089390:intron 30.0%
TCAACAACTAAACTTTCATG+TGG + chr1_2:70864408-70864427 Msa0089390:intron 30.0%
AAACAATAGAGAGAGAAAGA+GGG - chr1_2:70864570-70864589 None:intergenic 30.0%
AAAACAATAGAGAGAGAAAG+AGG - chr1_2:70864571-70864590 None:intergenic 30.0%
TCCCAAAAGAAGAGAAAAAA+AGG + chr1_2:70864593-70864612 Msa0089390:intron 30.0%
!! GCTATTTTGTGACAACTTTT+GGG - chr1_2:70864623-70864642 None:intergenic 30.0%
!! AGCTATTTTGTGACAACTTT+TGG - chr1_2:70864624-70864643 None:intergenic 30.0%
ACCTCATTTCTATTAGCAAA+TGG - chr1_2:70864708-70864727 None:intergenic 30.0%
!! AACTTGTTGAAAACATTCAG+AGG - chr1_2:70864787-70864806 None:intergenic 30.0%
TTGAACAGAATGAACAAAGA+AGG + chr1_2:70864882-70864901 Msa0089390:intron 30.0%
AGTACTTCTTATAAGATCAG+AGG - chr1_2:70864938-70864957 None:intergenic 30.0%
TACTTATGATGATCTCGAAA+AGG + chr1_2:70864954-70864973 Msa0089390:intron 30.0%
ACTTATGATGATCTCGAAAA+GGG + chr1_2:70864955-70864974 Msa0089390:intron 30.0%
ATGTGAAAAGGATGATTTAC+AGG - chr1_2:70865394-70865413 None:intergenic 30.0%
TGTTTCCAAAATGTAAGCTA+TGG - chr1_2:70865431-70865450 None:intergenic 30.0%
! TCAACCTTTTCTACTATATC+CGG - chr1_2:70865502-70865521 None:intergenic 30.0%
! TTTTCCATTCTTAGTACCAA+AGG - chr1_2:70865574-70865593 None:intergenic 30.0%
TTCATCAGCTGAATTTCAAA+AGG + chr1_2:70865714-70865733 Msa0089390:CDS 30.0%
CAAAAGAAAAGGAGAAAAAC+AGG - chr1_2:70865758-70865777 None:intergenic 30.0%
! TTAACTCATTTTCAGCGATT+GGG + chr1_2:70865831-70865850 Msa0089390:intron 30.0%
ACATAAGGAAATCAAGAGAT+TGG - chr1_2:70865860-70865879 None:intergenic 30.0%
TATGTATGTCTGTGTTTAGA+AGG + chr1_2:70865948-70865967 Msa0089390:intron 30.0%
!! GAGAAGAGTATTATTTGGAT+TGG - chr1_2:70866045-70866064 None:intergenic 30.0%
!! AGAAATTTTGATCAATTGGG+GGG - chr1_2:70866446-70866465 None:intergenic 30.0%
!! GAGAAATTTTGATCAATTGG+GGG - chr1_2:70866447-70866466 None:intergenic 30.0%
! AAGGTTTTTGAATCATGCTT+AGG - chr1_2:70866733-70866752 None:intergenic 30.0%
TAGATTAAAATGAGAGAGGA+AGG - chr1_2:70866752-70866771 None:intergenic 30.0%
! CTATAACTTAGGAATCCTTT+TGG + chr1_2:70866769-70866788 Msa0089390:intron 30.0%
!! CAATTAAAGATGATGGAACA+TGG - chr1_2:70866991-70867010 None:intergenic 30.0%
CATGTTCCATCATCTTTAAT+TGG + chr1_2:70866989-70867008 Msa0089390:intron 30.0%
GATCAAAGGTAAATTTGTGA+TGG - chr1_2:70867147-70867166 None:intergenic 30.0%
!! GATATGAAGCAGCTTTAAAT+TGG + chr1_2:70867195-70867214 Msa0089390:intron 30.0%
!! AGCTTTAAATTGGACTTTGT+AGG + chr1_2:70867205-70867224 Msa0089390:intron 30.0%
! GCTTTAAATTGGACTTTGTA+GGG + chr1_2:70867206-70867225 Msa0089390:intron 30.0%
TAACTGCATCTTGAAATTGA+CGG - chr1_2:70867417-70867436 None:intergenic 30.0%
CTCCTAAAGACATATTTGTA+AGG - chr1_2:70867525-70867544 None:intergenic 30.0%
! TACAAATATGTCTTTAGGAG+AGG + chr1_2:70867525-70867544 Msa0089390:intron 30.0%
GTACCTAGTAATGACATTAT+AGG - chr1_2:70867570-70867589 None:intergenic 30.0%
AAGAGAAAAAGAAACTACAG+CGG - chr1_2:70867623-70867642 None:intergenic 30.0%
CATCATCAACCAGTAATTAA+TGG - chr1_2:70867756-70867775 None:intergenic 30.0%
!! TTGATGATGAATCAGCATAT+GGG + chr1_2:70867767-70867786 Msa0089390:intron 30.0%
ATAGAGTTTAAAAGACAGTC+TGG - chr1_2:70867842-70867861 None:intergenic 30.0%
! CTAAAAGGACATTTGAAGTT+TGG + chr1_2:70867872-70867891 Msa0089390:intron 30.0%
ATCATACACAAAATGAAAGC+TGG - chr1_2:70867933-70867952 None:intergenic 30.0%
! AGCTTTCATTTTGTGTATGA+TGG + chr1_2:70867932-70867951 Msa0089390:intron 30.0%
!! CTTGCTATTATTCTTGTCAA+TGG + chr1_2:70867973-70867992 Msa0089390:intron 30.0%
GTGGTTTATCTTGAAAACTA+TGG + chr1_2:70868231-70868250 Msa0089390:CDS 30.0%
ACTTGAAGAAACTGATGATA+GGG - chr1_2:70868305-70868324 None:intergenic 30.0%
ATCAGTTTCTTCAAGTCAAT+GGG + chr1_2:70868309-70868328 Msa0089390:CDS 30.0%
AAGACAGTAAATACTTCTGT+GGG - chr1_2:70868467-70868486 None:intergenic 30.0%
!! TTGGTTTGCTACTAATTGAT+TGG + chr1_2:70868485-70868504 Msa0089390:three_prime_UTR 30.0%
CAAACCATTGAATGATAAGA+GGG + chr1_2:70868543-70868562 Msa0089390:three_prime_UTR 30.0%
! TTTTCCCTCTTATCATTCAA+TGG - chr1_2:70868550-70868569 None:intergenic 30.0%
AGTAATAACCTTCATATCAG+TGG - chr1_2:70868615-70868634 None:intergenic 30.0%
ATATACTCACAGTATGGTAA+TGG - chr1_2:70868666-70868685 None:intergenic 30.0%
AGTGATATATACTCACAGTA+TGG - chr1_2:70868672-70868691 None:intergenic 30.0%
AACCACCTAACAGTTAGTAT+AGG + chr1_2:70862753-70862772 Msa0089390:five_prime_UTR 35.0%
ACCACCTAACAGTTAGTATA+GGG + chr1_2:70862754-70862773 Msa0089390:five_prime_UTR 35.0%
!! ATTATTGATGGTGATGATGG+TGG - chr1_2:70862879-70862898 None:intergenic 35.0%
!! CCTATTATTGATGGTGATGA+TGG - chr1_2:70862882-70862901 None:intergenic 35.0%
CCATCATCACCATCAATAAT+AGG + chr1_2:70862879-70862898 Msa0089390:five_prime_UTR 35.0%
! AGGATTGGTGAAACAGAATT+TGG + chr1_2:70862899-70862918 Msa0089390:five_prime_UTR 35.0%
! GGATTGGTGAAACAGAATTT+GGG + chr1_2:70862900-70862919 Msa0089390:five_prime_UTR 35.0%
GATTGGTGAAACAGAATTTG+GGG + chr1_2:70862901-70862920 Msa0089390:five_prime_UTR 35.0%
ATTGGTGAAACAGAATTTGG+GGG + chr1_2:70862902-70862921 Msa0089390:five_prime_UTR 35.0%
ATTGCCATACTCTTATCCTT+CGG + chr1_2:70862949-70862968 Msa0089390:CDS 35.0%
ATACCACATATTCAGAGCAA+GGG - chr1_2:70863062-70863081 None:intergenic 35.0%
AATACCACATATTCAGAGCA+AGG - chr1_2:70863063-70863082 None:intergenic 35.0%
ACAAAGGATGGTTTCTTGTT+AGG + chr1_2:70863193-70863212 Msa0089390:CDS 35.0%
! GATATCTTGCTACTTCAATG+TGG + chr1_2:70863515-70863534 Msa0089390:intron 35.0%
AGCTTCCTTTAGTGTATGTT+TGG + chr1_2:70863560-70863579 Msa0089390:intron 35.0%
!!! ATGTTTGGTTCTACTTTTGG+AGG + chr1_2:70863575-70863594 Msa0089390:intron 35.0%
!!! TGTTTGGTTCTACTTTTGGA+GGG + chr1_2:70863576-70863595 Msa0089390:intron 35.0%
! TACATAATTGATTCTCGAGG+TGG + chr1_2:70863599-70863618 Msa0089390:intron 35.0%
ATTGACCTGTTTGGATGTAT+TGG + chr1_2:70863632-70863651 Msa0089390:intron 35.0%
CAAAACCAATACATCCAAAC+AGG - chr1_2:70863640-70863659 None:intergenic 35.0%
!! GTTTTGGACAGTGTTTGAAT+TGG + chr1_2:70863863-70863882 Msa0089390:intron 35.0%
!! GGATCAAGGTTTTGATGTTT+GGG + chr1_2:70864118-70864137 Msa0089390:CDS 35.0%
TCTCAAAAGTTGTCCCAAAA+TGG - chr1_2:70864475-70864494 None:intergenic 35.0%
AACAATAGAGAGAGAAAGAG+GGG - chr1_2:70864569-70864588 None:intergenic 35.0%
! GCCATTTGCTAATAGAAATG+AGG + chr1_2:70864704-70864723 Msa0089390:intron 35.0%
! TTTTCAGCACCAGTTTGAAA+AGG + chr1_2:70864859-70864878 Msa0089390:intron 35.0%
! TCTGTTCAACCTTTTCAAAC+TGG - chr1_2:70864871-70864890 None:intergenic 35.0%
ATTGTTTGATCTTGAGCAGT+TGG + chr1_2:70865026-70865045 Msa0089390:intron 35.0%
TGACTAGAATTCTTCGACAA+TGG - chr1_2:70865116-70865135 None:intergenic 35.0%
! TTGTCCTTTTGTAGCACTTT+TGG + chr1_2:70865254-70865273 Msa0089390:intron 35.0%
! TGTCCTTTTGTAGCACTTTT+GGG + chr1_2:70865255-70865274 Msa0089390:intron 35.0%
!! AATCCCAAAAGTGCTACAAA+AGG - chr1_2:70865261-70865280 None:intergenic 35.0%
!!! TTTTGTAGCACTTTTGGGAT+TGG + chr1_2:70865260-70865279 Msa0089390:intron 35.0%
AATGCTGGTAGAATGTGAAA+AGG - chr1_2:70865406-70865425 None:intergenic 35.0%
ATGTAAGCTATGGAAAATGC+TGG - chr1_2:70865421-70865440 None:intergenic 35.0%
GAAACATCTTATCCGTCTTA+GGG + chr1_2:70865445-70865464 Msa0089390:intron 35.0%
AAACATCTTATCCGTCTTAG+GGG + chr1_2:70865446-70865465 Msa0089390:intron 35.0%
GAAATAATTGTCCCCTAAGA+CGG - chr1_2:70865460-70865479 None:intergenic 35.0%
TCAACCGGATATAGTAGAAA+AGG + chr1_2:70865495-70865514 Msa0089390:CDS 35.0%
TCTGTCTCCAATTTCATACT+TGG + chr1_2:70865534-70865553 Msa0089390:CDS 35.0%
TGTTCAGATGATTGCTACAA+TGG + chr1_2:70865688-70865707 Msa0089390:intron 35.0%
GTTCAGATGATTGCTACAAT+GGG + chr1_2:70865689-70865708 Msa0089390:intron 35.0%
TTTGCTAAGCTGGAAATACA+TGG - chr1_2:70865792-70865811 None:intergenic 35.0%
! TCCAGCTTAGCAAATTTTCA+CGG + chr1_2:70865798-70865817 Msa0089390:intron 35.0%
! CTTAACTCATTTTCAGCGAT+TGG + chr1_2:70865830-70865849 Msa0089390:intron 35.0%
ACTTAGACGAGTATCACATA+AGG - chr1_2:70865875-70865894 None:intergenic 35.0%
TGGCATTCATGAAAGACAAA+AGG - chr1_2:70866074-70866093 None:intergenic 35.0%
TAATATATGTGTAGCGGTGA+TGG - chr1_2:70866249-70866268 None:intergenic 35.0%
!! TTCAAGTTTTTGGAGGATGA+TGG - chr1_2:70866947-70866966 None:intergenic 35.0%
!! GAAAAGGTGGTTCAAGTTTT+TGG - chr1_2:70866957-70866976 None:intergenic 35.0%
! TGACTTTTCTGACTATTCAC+TGG + chr1_2:70867036-70867055 Msa0089390:intron 35.0%
TAAATTGGACTTTGTAGGGA+CGG + chr1_2:70867210-70867229 Msa0089390:intron 35.0%
GGGAAGTAATAATGTTCAGT+GGG + chr1_2:70867240-70867259 Msa0089390:intron 35.0%
GAATAAACAAACTGGTACCA+AGG - chr1_2:70867313-70867332 None:intergenic 35.0%
GAAAAATAGAGACCTCTCAT+TGG - chr1_2:70867385-70867404 None:intergenic 35.0%
TTGAAATTGACGGAATGACA+TGG - chr1_2:70867407-70867426 None:intergenic 35.0%
! AAATATGTCTTTAGGAGAGG+AGG + chr1_2:70867528-70867547 Msa0089390:intron 35.0%
! GCTGTAGTTTCTTTTTCTCT+TGG + chr1_2:70867622-70867641 Msa0089390:intron 35.0%
!! GTTGATGATGAATCAGCATA+TGG + chr1_2:70867766-70867785 Msa0089390:intron 35.0%
ACAGTCTGGTGGAAATAATT+AGG - chr1_2:70867828-70867847 None:intergenic 35.0%
AAGCTTTCCATAATCGTACT+TGG - chr1_2:70868052-70868071 None:intergenic 35.0%
ATCAACAAAGGCAATGATCT+GGG - chr1_2:70868132-70868151 None:intergenic 35.0%
!! TTTTCAAGATAAACCACCTC+AGG - chr1_2:70868228-70868247 None:intergenic 35.0%
GACTTGAAGAAACTGATGAT+AGG - chr1_2:70868306-70868325 None:intergenic 35.0%
CATCAGTTTCTTCAAGTCAA+TGG + chr1_2:70868308-70868327 Msa0089390:CDS 35.0%
TCAGTTTCTTCAAGTCAATG+GGG + chr1_2:70868310-70868329 Msa0089390:CDS 35.0%
TTACAGACACAACATCAAAG+TGG - chr1_2:70868427-70868446 None:intergenic 35.0%
CAAGACAGTAAATACTTCTG+TGG - chr1_2:70868468-70868487 None:intergenic 35.0%
!! CACAGAAGTATTTACTGTCT+TGG + chr1_2:70868466-70868485 Msa0089390:three_prime_UTR 35.0%
CCTCTTATCATTCAATGGTT+TGG - chr1_2:70868545-70868564 None:intergenic 35.0%
CCAAACCATTGAATGATAAG+AGG + chr1_2:70868542-70868561 Msa0089390:three_prime_UTR 35.0%
ACCCTATACTAACTGTTAGG+TGG - chr1_2:70862758-70862777 None:intergenic 40.0%
ACCTAACAGTTAGTATAGGG+TGG + chr1_2:70862757-70862776 Msa0089390:five_prime_UTR 40.0%
ACCACCCTATACTAACTGTT+AGG - chr1_2:70862761-70862780 None:intergenic 40.0%
TGAAACAGAATTTGGGGGAT+GGG + chr1_2:70862907-70862926 Msa0089390:exon 40.0%
GTTTCCGAAGGATAAGAGTA+TGG - chr1_2:70862956-70862975 None:intergenic 40.0%
!! AGAGAGTTGGTTGTTGTTTG+GGG - chr1_2:70863011-70863030 None:intergenic 40.0%
!! CAGAGAGTTGGTTGTTGTTT+GGG - chr1_2:70863012-70863031 None:intergenic 40.0%
! ACAGAGAGTTGGTTGTTGTT+TGG - chr1_2:70863013-70863032 None:intergenic 40.0%
ATGAGTTCATCACAGAGAGT+TGG - chr1_2:70863024-70863043 None:intergenic 40.0%
! TTACCCTTGCTCTGAATATG+TGG + chr1_2:70863056-70863075 Msa0089390:CDS 40.0%
GCTCAAAAACAACAACAACG+AGG + chr1_2:70863268-70863287 Msa0089390:CDS 40.0%
TAGTAACCATGAATAGGCCA+TGG - chr1_2:70863312-70863331 None:intergenic 40.0%
! ACGTCTTCTATCAGAAGTGT+CGG - chr1_2:70863397-70863416 None:intergenic 40.0%
ATGAAGCACATACACACACA+TGG - chr1_2:70863471-70863490 None:intergenic 40.0%
! GGGTACATAATTGATTCTCG+AGG + chr1_2:70863596-70863615 Msa0089390:intron 40.0%
!!! CTGTCATTTTTTAGGGGAAG+TGG + chr1_2:70863927-70863946 Msa0089390:intron 40.0%
ACCTGCCTGATTGTATCAAA+TGG - chr1_2:70864048-70864067 None:intergenic 40.0%
ATGAAGCCCAATGATTGTTC+TGG - chr1_2:70864092-70864111 None:intergenic 40.0%
!! CGGATCAAGGTTTTGATGTT+TGG + chr1_2:70864117-70864136 Msa0089390:CDS 40.0%
!! CAAGGTTTTGATGTTTGGGT+AGG + chr1_2:70864122-70864141 Msa0089390:CDS 40.0%
! ATACGATGTGACTTGTGCTT+TGG + chr1_2:70865182-70865201 Msa0089390:intron 40.0%
ATTTGTAGTTGGGCATTCAC+AGG + chr1_2:70865357-70865376 Msa0089390:CDS 40.0%
GGAAACATCTTATCCGTCTT+AGG + chr1_2:70865444-70865463 Msa0089390:intron 40.0%
TACTATATCCGGTTGAGTGA+AGG - chr1_2:70865491-70865510 None:intergenic 40.0%
GGATCATATTAGTGCACCTT+TGG + chr1_2:70865555-70865574 Msa0089390:CDS 40.0%
TGCACCTTTGGTACTAAGAA+TGG + chr1_2:70865567-70865586 Msa0089390:CDS 40.0%
GGAAAAGATGCACATTGATC+AGG + chr1_2:70865588-70865607 Msa0089390:CDS 40.0%
AAACAGGACAGAACGAAAAC+TGG - chr1_2:70865742-70865761 None:intergenic 40.0%
! CCAGCTTAGCAAATTTTCAC+GGG + chr1_2:70865799-70865818 Msa0089390:intron 40.0%
! CAGCTTAGCAAATTTTCACG+GGG + chr1_2:70865800-70865819 Msa0089390:intron 40.0%
TGAGAGACATGAACCTGTAA+TGG - chr1_2:70865917-70865936 None:intergenic 40.0%
TGCCATTGCAATTACTTTGC+TGG + chr1_2:70866089-70866108 Msa0089390:intron 40.0%
AGCCAGCAAAGTAATTGCAA+TGG - chr1_2:70866094-70866113 None:intergenic 40.0%
TTTGTCTGAGTTGTCTGACA+TGG + chr1_2:70866533-70866552 Msa0089390:intron 40.0%
ATGGCTCGTATGAGTGTTAT+AGG + chr1_2:70866552-70866571 Msa0089390:intron 40.0%
CGTATGAGTGTTATAGGTGT+CGG + chr1_2:70866558-70866577 Msa0089390:intron 40.0%
CTTAGGCAAGTTATGAAGCA+CGG - chr1_2:70866716-70866735 None:intergenic 40.0%
ATACACGCAGAATGACCAAA+AGG - chr1_2:70866787-70866806 None:intergenic 40.0%
!!! TTTTTGGAGGATGATGGATG+AGG - chr1_2:70866941-70866960 None:intergenic 40.0%
!! AAGGTGGTTCAAGTTTTTGG+AGG - chr1_2:70866954-70866973 None:intergenic 40.0%
! CATGGAACATACTCTGGAAA+AGG - chr1_2:70866973-70866992 None:intergenic 40.0%
ATGGAACATGGAACATACTC+TGG - chr1_2:70866979-70866998 None:intergenic 40.0%
AAATTGGACTTTGTAGGGAC+GGG + chr1_2:70867211-70867230 Msa0089390:intron 40.0%
GGGGAAGTAATAATGTTCAG+TGG + chr1_2:70867239-70867258 Msa0089390:intron 40.0%
TCTCTTCTACATGACAACCT+TGG + chr1_2:70867293-70867312 Msa0089390:intron 40.0%
TTACACTGACATCCAATGAG+AGG + chr1_2:70867370-70867389 Msa0089390:intron 40.0%
TGACATGCTTTATCTTGCCA+AGG + chr1_2:70867691-70867710 Msa0089390:intron 40.0%
CTTCGTACAAATATGCTCCT+TGG - chr1_2:70867711-70867730 None:intergenic 40.0%
ATGATGAATCAGCATATGGG+TGG + chr1_2:70867770-70867789 Msa0089390:intron 40.0%
GAGTTTAAAAGACAGTCTGG+TGG - chr1_2:70867839-70867858 None:intergenic 40.0%
ACCTTCTCCAAGTACGATTA+TGG + chr1_2:70868042-70868061 Msa0089390:CDS 40.0%
TCCATAATCGTACTTGGAGA+AGG - chr1_2:70868046-70868065 None:intergenic 40.0%
! ATGCGGCTAAGGTCAAATTT+TGG - chr1_2:70868108-70868127 None:intergenic 40.0%
CATCAACAAAGGCAATGATC+TGG - chr1_2:70868133-70868152 None:intergenic 40.0%
CAGATCATTGCCTTTGTTGA+TGG + chr1_2:70868131-70868150 Msa0089390:CDS 40.0%
!! TTGCCTTTGTTGATGGCTTA+TGG + chr1_2:70868138-70868157 Msa0089390:CDS 40.0%
!! TGCCTTTGTTGATGGCTTAT+GGG + chr1_2:70868139-70868158 Msa0089390:CDS 40.0%
AGACACAACATCAAAGTGGA+CGG - chr1_2:70868423-70868442 None:intergenic 40.0%
CTCTCAGTGAAGATGTAGAA+AGG + chr1_2:70868579-70868598 Msa0089390:three_prime_UTR 40.0%
CAGTGAAGATGTAGAAAGGA+TGG + chr1_2:70868583-70868602 Msa0089390:three_prime_UTR 40.0%
GTGAAACAGAATTTGGGGGA+TGG + chr1_2:70862906-70862925 Msa0089390:exon 45.0%
GAAACAGAATTTGGGGGATG+GGG + chr1_2:70862908-70862927 Msa0089390:exon 45.0%
!! AGAGTTGGTTGTTGTTTGGG+GGG - chr1_2:70863009-70863028 None:intergenic 45.0%
!! GAGAGTTGGTTGTTGTTTGG+GGG - chr1_2:70863010-70863029 None:intergenic 45.0%
CTTCTGATAGAAGACGTGTC+TGG + chr1_2:70863400-70863419 Msa0089390:intron 45.0%
GCCATTTGATACAATCAGGC+AGG + chr1_2:70864044-70864063 Msa0089390:intron 45.0%
ATCATTGGGCTTCATCCTTG+CGG + chr1_2:70864097-70864116 Msa0089390:CDS 45.0%
CATCAAAACCTTGATCCGCA+AGG - chr1_2:70864115-70864134 None:intergenic 45.0%
! GCAATTTTGTGGAACACCCT+TGG - chr1_2:70864344-70864363 None:intergenic 45.0%
CTCGAAAAGGGAGAACAGAA+TGG + chr1_2:70864967-70864986 Msa0089390:intron 45.0%
ATTAGCCCTGTACGATCTTG+CGG + chr1_2:70865294-70865313 Msa0089390:CDS 45.0%
CATTTCCGCAAGATCGTACA+GGG - chr1_2:70865302-70865321 None:intergenic 45.0%
TCATTTCCGCAAGATCGTAC+AGG - chr1_2:70865303-70865322 None:intergenic 45.0%
! TTTTGCTGCCTTCACTCAAC+CGG + chr1_2:70865480-70865499 Msa0089390:CDS 45.0%
!! CCCGTGAAAATTTGCTAAGC+TGG - chr1_2:70865802-70865821 None:intergenic 45.0%
GACATGCTGTCATCCATTAC+AGG + chr1_2:70865901-70865920 Msa0089390:CDS 45.0%
CGCACAATTCAGATCAGAGA+GGG - chr1_2:70866191-70866210 None:intergenic 45.0%
TTACTTCGACACTCCTAGAC+CGG - chr1_2:70866587-70866606 None:intergenic 45.0%
! GGAACATACTCTGGAAAAGG+TGG - chr1_2:70866970-70866989 None:intergenic 45.0%
!! GCGCTGTTTTCAATTAGCAG+TGG + chr1_2:70867058-70867077 Msa0089390:intron 45.0%
AATTGGACTTTGTAGGGACG+GGG + chr1_2:70867212-70867231 Msa0089390:intron 45.0%
AATCAGCATATGGGTGGAAG+TGG + chr1_2:70867776-70867795 Msa0089390:intron 45.0%
GGATCACTGGAGAACATATG+AGG - chr1_2:70868014-70868033 None:intergenic 45.0%
!! ACTTGGAGAAGGTACCTTTG+CGG - chr1_2:70868035-70868054 None:intergenic 45.0%
! CGGCTAAGGTCAAATTTTGG+TGG - chr1_2:70868105-70868124 None:intergenic 45.0%
AAGGCAATGATCTGGGTATG+CGG - chr1_2:70868125-70868144 None:intergenic 45.0%
!! GCCTTTGTTGATGGCTTATG+GGG + chr1_2:70868140-70868159 Msa0089390:CDS 45.0%
!! CCTTTGTTGATGGCTTATGG+GGG + chr1_2:70868141-70868160 Msa0089390:CDS 45.0%
TGATTTCCAGCACACACTCA+AGG + chr1_2:70868188-70868207 Msa0089390:CDS 45.0%
AAGATAAACCACCTCAGGTG+TGG - chr1_2:70868223-70868242 None:intergenic 45.0%
!! TATATTAATTTATTTATAGA+CGG + chr1_2:70866262-70866281 Msa0089390:intron 5.0%
TACAGAACACGCGCCAATTG+AGG + chr1_2:70862786-70862805 Msa0089390:five_prime_UTR 50.0%
AACATCGCTCACTCCTTCGA+CGG + chr1_2:70862973-70862992 Msa0089390:CDS 50.0%
GATGAACTCATTCTTCCCGC+TGG + chr1_2:70863033-70863052 Msa0089390:CDS 50.0%
TTCAGAGCAAGGGTAACCAG+CGG - chr1_2:70863052-70863071 None:intergenic 50.0%
ACAACAACAACGAGGTCCTC+CGG + chr1_2:70863276-70863295 Msa0089390:CDS 50.0%
GCTTCTCCATGGCCTATTCA+TGG + chr1_2:70863303-70863322 Msa0089390:CDS 50.0%
ACAATCAGGCAGGTGATGCA+TGG + chr1_2:70864054-70864073 Msa0089390:intron 50.0%
GTTTGGGTAGGAAATGTGCG+TGG + chr1_2:70864134-70864153 Msa0089390:CDS 50.0%
GAAATGTGCGTGGAACACGT+TGG + chr1_2:70864144-70864163 Msa0089390:CDS 50.0%
!!! AGCACTTTTGGGATTGGAGC+TGG + chr1_2:70865266-70865285 Msa0089390:intron 50.0%
TCAGATCAGAGAGGGTGAGT+AGG - chr1_2:70866183-70866202 None:intergenic 50.0%
GCGCACAATTCAGATCAGAG+AGG - chr1_2:70866192-70866211 None:intergenic 50.0%
!! GTGTTATAGGTGTCGGACAC+CGG + chr1_2:70866565-70866584 Msa0089390:intron 50.0%
ACGTGTCGTACGAGTGTCAT+GGG + chr1_2:70866652-70866671 Msa0089390:intron 50.0%
TATGAAGCACGGACACCTCT+AGG - chr1_2:70866705-70866724 None:intergenic 50.0%
ATTGGACTTTGTAGGGACGG+GGG + chr1_2:70867213-70867232 Msa0089390:intron 50.0%
TGTTCTCCAGTGATCCGCAA+AGG + chr1_2:70868018-70868037 Msa0089390:intron 50.0%
! AAGGTACCTTTGCGGATCAC+TGG - chr1_2:70868027-70868046 None:intergenic 50.0%
ATGATCTGGGTATGCGGCTA+AGG - chr1_2:70868119-70868138 None:intergenic 50.0%
CCCCCATAAGCCATCAACAA+AGG - chr1_2:70868144-70868163 None:intergenic 50.0%
TAAACCACCTCAGGTGTGGA+TGG - chr1_2:70868219-70868238 None:intergenic 50.0%
GGAGTGCACCACTGATATGA+AGG + chr1_2:70868604-70868623 Msa0089390:three_prime_UTR 50.0%
!! TTTGGGGGATGGGGAGTGTT+TGG + chr1_2:70862917-70862936 Msa0089390:exon 55.0%
GGAGTGAGCGATGTTTCCGA+AGG - chr1_2:70862968-70862987 None:intergenic 55.0%
TCAGAGCAAGGGTAACCAGC+GGG - chr1_2:70863051-70863070 None:intergenic 55.0%
AGGCCATGGAGAAGCAGAAC+CGG - chr1_2:70863298-70863317 None:intergenic 55.0%
GGCTTCATCCTTGCGGATCA+AGG + chr1_2:70864104-70864123 Msa0089390:CDS 55.0%
GACACTCGTACGACACGTGT+CGG - chr1_2:70866650-70866669 None:intergenic 55.0%
CACGTGTCGTACGAGTGTCA+TGG + chr1_2:70866651-70866670 Msa0089390:intron 55.0%
! TACGAGTGTCATGGGAGTGC+CGG + chr1_2:70866660-70866679 Msa0089390:intron 55.0%
TTGCTTCAACGAGTCACGCG+TGG + chr1_2:70866895-70866914 Msa0089390:CDS 55.0%
ACTTTGTAGGGACGGGGGTT+GGG + chr1_2:70867218-70867237 Msa0089390:intron 55.0%
GCAGTTCCTTGAGTGTGTGC+TGG - chr1_2:70868197-70868216 None:intergenic 55.0%
GCCAATTGAGGCGCGTTGGA+GGG + chr1_2:70862798-70862817 Msa0089390:five_prime_UTR 60.0%
TCCCTCCAACGCGCCTCAAT+TGG - chr1_2:70862802-70862821 None:intergenic 60.0%
ATTGAGGCGCGTTGGAGGGA+TGG + chr1_2:70862802-70862821 Msa0089390:five_prime_UTR 60.0%
ATCGCTCACTCCTTCGACGG+CGG + chr1_2:70862976-70862995 Msa0089390:CDS 60.0%
CCATGGAGAAGCAGAACCGG+AGG - chr1_2:70863295-70863314 None:intergenic 60.0%
CCTCCGGTTCTGCTTCTCCA+TGG + chr1_2:70863292-70863311 Msa0089390:CDS 60.0%
CGTGGAACACGTTGGAGCCA+TGG + chr1_2:70864152-70864171 Msa0089390:CDS 60.0%
!! TAGGTGTCGGACACCGGTCT+AGG + chr1_2:70866571-70866590 Msa0089390:intron 60.0%
!! CTCTAGGACTAGGCGTGTCG+CGG - chr1_2:70866689-70866708 None:intergenic 60.0%
!! GCACGGACACCTCTAGGACT+AGG - chr1_2:70866699-70866718 None:intergenic 60.0%
GACTTTGTAGGGACGGGGGT+TGG + chr1_2:70867217-70867236 Msa0089390:intron 60.0%
CTTTGTAGGGACGGGGGTTG+GGG + chr1_2:70867219-70867238 Msa0089390:intron 60.0%
TTTGTAGGGACGGGGGTTGG+GGG + chr1_2:70867220-70867239 Msa0089390:intron 60.0%
GGAACTGCCATCCACACCTG+AGG + chr1_2:70868209-70868228 Msa0089390:CDS 60.0%
ACTGCCATCCACACCTGAGG+TGG + chr1_2:70868212-70868231 Msa0089390:CDS 60.0%
ACGCGCCAATTGAGGCGCGT+TGG + chr1_2:70862794-70862813 Msa0089390:five_prime_UTR 65.0%
CGCCAATTGAGGCGCGTTGG+AGG + chr1_2:70862797-70862816 Msa0089390:five_prime_UTR 65.0%
ACTAGGCGTGTCGCGGTGTC+CGG - chr1_2:70866682-70866701 None:intergenic 65.0%
CGCGACACGCCTAGTCCTAG+AGG + chr1_2:70866687-70866706 Msa0089390:intron 65.0%
! GGGTGCGCTGCCGCCGTCGA+AGG - chr1_2:70862989-70863008 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 70862752 70868773 70862752 ID=Msa0089390;Name=Msa0089390
chr1_2 mRNA 70862752 70868773 70862752 ID=Msa0089390-mRNA-1;Parent=Msa0089390;Name=Msa0089390-mRNA-1;_AED=0.25;_eAED=0.25;_QI=173|1|1|1|1|1|9|423|407
chr1_2 exon 70862752 70863077 70862752 ID=Msa0089390-mRNA-1:exon:24416;Parent=Msa0089390-mRNA-1
chr1_2 exon 70863187 70863324 70863187 ID=Msa0089390-mRNA-1:exon:24417;Parent=Msa0089390-mRNA-1
chr1_2 exon 70864062 70864202 70864062 ID=Msa0089390-mRNA-1:exon:24418;Parent=Msa0089390-mRNA-1
chr1_2 exon 70865268 70865378 70865268 ID=Msa0089390-mRNA-1:exon:24419;Parent=Msa0089390-mRNA-1
chr1_2 exon 70865466 70865609 70865466 ID=Msa0089390-mRNA-1:exon:24420;Parent=Msa0089390-mRNA-1
chr1_2 exon 70865695 70865735 70865695 ID=Msa0089390-mRNA-1:exon:24421;Parent=Msa0089390-mRNA-1
chr1_2 exon 70865846 70865922 70865846 ID=Msa0089390-mRNA-1:exon:24422;Parent=Msa0089390-mRNA-1
chr1_2 exon 70866885 70866980 70866885 ID=Msa0089390-mRNA-1:exon:24423;Parent=Msa0089390-mRNA-1
chr1_2 exon 70868028 70868773 70868028 ID=Msa0089390-mRNA-1:exon:24424;Parent=Msa0089390-mRNA-1
chr1_2 five_prime_UTR 70862752 70862924 70862752 ID=Msa0089390-mRNA-1:five_prime_utr;Parent=Msa0089390-mRNA-1
chr1_2 CDS 70862925 70863077 70862925 ID=Msa0089390-mRNA-1:cds;Parent=Msa0089390-mRNA-1
chr1_2 CDS 70863187 70863324 70863187 ID=Msa0089390-mRNA-1:cds;Parent=Msa0089390-mRNA-1
chr1_2 CDS 70864062 70864202 70864062 ID=Msa0089390-mRNA-1:cds;Parent=Msa0089390-mRNA-1
chr1_2 CDS 70865268 70865378 70865268 ID=Msa0089390-mRNA-1:cds;Parent=Msa0089390-mRNA-1
chr1_2 CDS 70865466 70865609 70865466 ID=Msa0089390-mRNA-1:cds;Parent=Msa0089390-mRNA-1
chr1_2 CDS 70865695 70865735 70865695 ID=Msa0089390-mRNA-1:cds;Parent=Msa0089390-mRNA-1
chr1_2 CDS 70865846 70865922 70865846 ID=Msa0089390-mRNA-1:cds;Parent=Msa0089390-mRNA-1
chr1_2 CDS 70866885 70866980 70866885 ID=Msa0089390-mRNA-1:cds;Parent=Msa0089390-mRNA-1
chr1_2 CDS 70868028 70868350 70868028 ID=Msa0089390-mRNA-1:cds;Parent=Msa0089390-mRNA-1
chr1_2 three_prime_UTR 70868351 70868773 70868351 ID=Msa0089390-mRNA-1:three_prime_utr;Parent=Msa0089390-mRNA-1
Gene Sequence

>Msa0089390

ATGGGGAGTGTTTGGTTGACGACAATTGCCATACTCTTATCCTTCGGAAACATCGCTCACTCCTTCGACGGCGGCAGCGCACCCCCCAAACAACAACCAACTCTCTGTGATGAACTCATTCTTCCCGCTGGTTACCCTTGCTCTGAATATGTGATTGAAACAAAGGATGGTTTCTTGTTAGGTCTTCAGCGCGTGTCTTCATCTTCTTCTTCTTTTGCGCGTATTCGTTATTCTGCTCAAAAACAACAACAACGAGGTCCTCCGGTTCTGCTTCTCCATGGCCTATTCATGGCAGGTGATGCATGGTTTCTAAATACACCAGAACAATCATTGGGCTTCATCCTTGCGGATCAAGGTTTTGATGTTTGGGTAGGAAATGTGCGTGGAACACGTTGGAGCCATGGACATAAATCTTTATCAGAGAAGAATAAGCACTTTTGGGATTGGAGCTGGCAAGAATTAGCCCTGTACGATCTTGCGGAAATGATCAATTATATTAATTCAGTGACAAACTCAAAGTTATTTGTAGTTGGGCATTCACAGGGGACAATTATTTCTTTTGCTGCCTTCACTCAACCGGATATAGTAGAAAAGGTTGAAGCTGCAGCTCTTCTGTCTCCAATTTCATACTTGGATCATATTAGTGCACCTTTGGTACTAAGAATGGAAAAGATGCACATTGATCAGATGATTGCTACAATGGGTGTTCATCAGCTGAATTTCAAAAGCGATTGGGAAACCAATCTCTTGATTTCCTTATGTGATACTCGTCTAAGTTGCAGTGACATGCTGTCATCCATTACAGGAAAGAATTGTTGCTTCAACGAGTCACGCGTGGCTTATTATCTTGAACAAGAACCTCATCCATCATCCTCCAAAAACTTGAACCACCTTTTCCAGATGATCCGCAAAGGTACCTTCTCCAAGTACGATTATGGAAAGCTTAAAAATCTGATAGAGTATGGCAATTTCAAACCACCAAAATTTGACCTTAGCCGCATACCCAGATCATTGCCTTTGTTGATGGCTTATGGGGGAAACGATGCTTTAGCAGATGTAACTGATTTCCAGCACACACTCAAGGAACTGCCATCCACACCTGAGGTGGTTTATCTTGAAAACTATGGTCACATTGACTTCATTTTAAGCTTGCAAGCAAAACAAGATCTTTATGACCCTATCATCAGTTTCTTCAAGTCAATGGGGAAATTTAGTAGTATTTAA

Protein sequence

>Msa0089390

MGSVWLTTIAILLSFGNIAHSFDGGSAPPKQQPTLCDELILPAGYPCSEYVIETKDGFLLGLQRVSSSSSSFARIRYSAQKQQQRGPPVLLLHGLFMAGDAWFLNTPEQSLGFILADQGFDVWVGNVRGTRWSHGHKSLSEKNKHFWDWSWQELALYDLAEMINYINSVTNSKLFVVGHSQGTIISFAAFTQPDIVEKVEAAALLSPISYLDHISAPLVLRMEKMHIDQMIATMGVHQLNFKSDWETNLLISLCDTRLSCSDMLSSITGKNCCFNESRVAYYLEQEPHPSSSKNLNHLFQMIRKGTFSKYDYGKLKNLIEYGNFKPPKFDLSRIPRSLPLLMAYGGNDALADVTDFQHTLKELPSTPEVVYLENYGHIDFILSLQAKQDLYDPIISFFKSMGKFSSI*