AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042120 MtrunA17_Chr1g0207951 74.396 414 101 4 3 414 171 581 0.0 642
Msa0042120 MtrunA17_Chr1g0207951 68.660 418 124 2 3 414 703 1119 0.0 591
Msa0042120 MtrunA17_Chr1g0207971 73.105 409 104 5 1 405 49 455 0.0 598
Msa0042120 MtrunA17_Chr3g0098111 68.779 426 118 4 3 414 56 480 0.0 594
Msa0042120 MtrunA17_Chr1g0207861 69.393 428 112 4 3 414 55 479 0.0 580
Msa0042120 MtrunA17_Chr1g0161351 69.359 421 114 4 3 409 84 503 0.0 573
Msa0042120 MtrunA17_Chr1g0207831 67.391 414 127 4 2 407 54 467 0.0 564
Msa0042120 MtrunA17_Chr8g0365811 67.062 422 118 4 3 406 542 960 0.0 561
Msa0042120 MtrunA17_Chr8g0365811 65.330 424 126 4 3 406 56 478 1.84e-179 525
Msa0042120 MtrunA17_Chr1g0207931 61.412 425 94 5 3 413 139 507 7.23e-173 493
Msa0042120 MtrunA17_Chr1g0207881 86.017 236 20 1 1 236 49 271 3.79e-143 413
Msa0042120 MtrunA17_Chr1g0207881 93.750 144 9 0 271 414 252 395 2.82e-89 275
Msa0042120 MtrunA17_Chr5g0393591 45.521 413 166 9 11 408 72 440 5.98e-117 348
Msa0042120 MtrunA17_Chr1g0207981 40.659 364 200 7 55 408 120 477 4.30e-86 270
Msa0042120 MtrunA17_Chr6g0464871 37.949 390 217 9 27 400 83 463 1.51e-80 255
Msa0042120 MtrunA17_Chr1g0207911 66.327 196 59 3 2 190 54 249 2.79e-79 245
Msa0042120 MtrunA17_Chr6g0464841 36.410 390 223 11 27 400 71 451 8.05e-78 248
Msa0042120 MtrunA17_Chr5g0414331 37.736 371 213 7 40 401 90 451 8.90e-78 248
Msa0042120 MtrunA17_Chr8g0380531 35.864 382 226 8 34 405 87 459 3.81e-75 241
Msa0042120 MtrunA17_Chr6g0464861 37.027 370 216 9 39 400 90 450 4.93e-75 241
Msa0042120 MtrunA17_Chr5g0414321 36.729 373 218 7 40 403 88 451 4.66e-74 238
Msa0042120 MtrunA17_Chr4g0053501 35.194 412 237 10 13 403 62 464 3.84e-73 237
Msa0042120 MtrunA17_Chr8g0377941 36.181 398 221 7 34 413 89 471 4.33e-73 236
Msa0042120 MtrunA17_Chr7g0250001 36.559 372 221 7 39 403 84 447 5.12e-73 236
Msa0042120 MtrunA17_Chr8g0377921 34.606 393 227 10 33 403 79 463 7.54e-72 233
Msa0042120 MtrunA17_Chr6g0464881 33.668 398 237 10 26 406 70 457 1.06e-69 227
Msa0042120 MtrunA17_Chr3g0121991 34.703 438 239 13 2 403 119 545 1.52e-69 229
Msa0042120 MtrunA17_Chr6g0464921 33.690 374 230 7 39 403 91 455 1.23e-68 224
Msa0042120 MtrunA17_Chr7g0249981 34.140 372 230 7 39 403 103 466 1.09e-67 223
Msa0042120 MtrunA17_Chr4g0053321 35.211 426 239 12 1 403 68 479 2.25e-67 222
Msa0042120 MtrunA17_Chr3g0122001 36.591 399 214 11 35 403 563 952 6.56e-67 229
Msa0042120 MtrunA17_Chr3g0122001 35.264 397 227 9 33 403 81 473 1.02e-64 223
Msa0042120 MtrunA17_Chr7g0249931 36.533 375 217 10 39 403 120 483 6.35e-65 215
Msa0042120 MtrunA17_Chr5g0401721 32.933 416 248 13 10 403 64 470 3.71e-60 202
Msa0042120 MtrunA17_Chr5g0426431 32.292 384 228 9 41 403 105 477 1.64e-59 201
Msa0042120 MtrunA17_Chr6g0454341 31.383 376 227 8 50 403 111 477 7.18e-58 196
Msa0042120 MtrunA17_Chr2g0278711 30.548 383 234 8 44 403 103 476 1.18e-56 193
Msa0042120 MtrunA17_Chr6g0454201 32.642 386 225 9 44 403 104 480 2.67e-56 192
Msa0042120 MtrunA17_Chr6g0454131 32.267 375 222 10 57 409 120 484 1.75e-55 190
Msa0042120 MtrunA17_Chr3g0078841 30.667 375 231 8 50 403 111 477 2.45e-55 190
Msa0042120 MtrunA17_Chr6g0454121 32.086 374 222 9 52 403 115 478 3.49e-55 189
Msa0042120 MtrunA17_Chr8g0336331 30.133 375 233 8 50 403 110 476 1.00e-54 188
Msa0042120 MtrunA17_Chr7g0249961 41.667 240 129 5 170 403 25 259 3.07e-54 181
Msa0042120 MtrunA17_Chr7g0217881 30.576 399 234 11 28 403 83 461 7.29e-54 186
Msa0042120 MtrunA17_Chr6g0454191 30.390 385 235 10 44 403 104 480 1.16e-53 185
Msa0042120 MtrunA17_Chr3g0118711 31.202 391 224 11 44 403 104 480 2.33e-53 184
Msa0042120 MtrunA17_Chr3g0118671 31.903 373 217 9 57 403 112 473 2.39e-53 184
Msa0042120 MtrunA17_Chr3g0118771 31.522 368 211 10 57 396 127 481 3.04e-53 184
Msa0042120 MtrunA17_Chr6g0454361 30.435 391 231 10 42 403 102 480 4.55e-53 184
Msa0042120 MtrunA17_Chr4g0050341 29.716 387 243 8 41 404 111 491 6.90e-53 184
Msa0042120 MtrunA17_Chr6g0452771 31.186 388 232 9 42 403 101 479 1.10e-52 183
Msa0042120 MtrunA17_Chr6g0454141 30.412 388 237 8 41 403 100 479 1.26e-52 182
Msa0042120 MtrunA17_Chr6g0454301 30.548 383 235 9 44 403 356 730 1.41e-52 187
Msa0042120 MtrunA17_Chr6g0454301 33.188 229 139 3 180 402 8 228 5.41e-37 143
Msa0042120 MtrunA17_Chr3g0092641 30.469 384 235 9 41 403 105 477 1.68e-52 182
Msa0042120 MtrunA17_Chr3g0118721 32.653 294 178 4 122 403 4 289 2.49e-52 177
Msa0042120 MtrunA17_Chr6g0453961 32.249 369 219 10 57 403 130 489 1.07e-51 180
Msa0042120 MtrunA17_Chr3g0118691 29.223 373 227 8 57 403 121 482 3.08e-51 179
Msa0042120 MtrunA17_Chr3g0118701 29.124 388 236 9 44 403 106 482 1.39e-50 177
Msa0042120 MtrunA17_Chr6g0454151 30.412 388 233 10 42 403 101 477 1.91e-50 177
Msa0042120 MtrunA17_Chr6g0454261 30.077 389 237 10 41 403 100 479 3.69e-50 176
Msa0042120 MtrunA17_Chr5g0426401 34.375 288 168 5 122 397 26 304 1.07e-49 170
Msa0042120 MtrunA17_Chr6g0454401 28.710 411 248 10 27 403 81 480 1.25e-49 175
Msa0042120 MtrunA17_Chr6g0453951 29.639 388 238 9 42 403 148 526 3.35e-49 174
Msa0042120 MtrunA17_Chr3g0112771 38.889 270 145 7 143 403 193 451 3.57e-49 173
Msa0042120 MtrunA17_Chr6g0454181 30.649 385 234 10 44 403 103 479 5.74e-49 173
Msa0042120 MtrunA17_Chr6g0454331 30.412 388 235 9 42 403 100 478 1.75e-48 172
Msa0042120 MtrunA17_Chr6g0454321 28.678 401 256 8 11 389 71 463 1.76e-48 174
Msa0042120 MtrunA17_Chr5g0423981 29.972 357 207 6 57 403 121 444 4.45e-48 170
Msa0042120 MtrunA17_Chr6g0454221 37.447 235 129 4 182 406 7 233 6.47e-48 165
Msa0042120 MtrunA17_Chr7g0218791 32.143 392 223 11 27 400 75 441 9.03e-48 169
Msa0042120 MtrunA17_Chr4g0044511 31.888 392 207 14 53 407 140 508 1.02e-47 170
Msa0042120 MtrunA17_Chr6g0454271 32.990 291 178 5 122 403 4 286 1.06e-47 164
Msa0042120 MtrunA17_Chr8g0359821 29.710 414 238 12 27 403 80 477 4.04e-46 165
Msa0042120 MtrunA17_Chr6g0454291 29.974 387 238 9 42 403 98 476 4.10e-46 165
Msa0042120 MtrunA17_Chr7g0243631 30.053 376 221 13 60 404 123 487 8.76e-44 159
Msa0042120 MtrunA17_Chr6g0454211 29.381 388 239 9 42 403 388 766 1.06e-43 162
Msa0042120 MtrunA17_Chr6g0454211 32.456 228 117 8 98 315 36 236 1.05e-22 100
Msa0042120 MtrunA17_Chr8g0339461 29.630 378 220 12 57 403 109 471 7.22e-43 156
Msa0042120 MtrunA17_Chr4g0032331 31.476 359 208 13 49 392 103 438 1.95e-42 155
Msa0042120 MtrunA17_Chr3g0118661 28.346 381 245 8 44 402 104 478 2.84e-42 155
Msa0042120 MtrunA17_Chr7g0218811 30.194 361 220 9 50 400 108 446 1.67e-41 152
Msa0042120 MtrunA17_Chr6g0454171 35.769 260 130 7 157 403 74 309 2.06e-41 149
Msa0042120 MtrunA17_Chr8g0373301 30.400 375 212 12 52 397 106 460 2.43e-41 152
Msa0042120 MtrunA17_Chr7g0232311 32.102 352 198 10 70 396 121 456 6.73e-41 150
Msa0042120 MtrunA17_Chr5g0419771 26.582 395 254 12 38 403 125 512 7.16e-41 152
Msa0042120 MtrunA17_Chr3g0118751 29.255 376 208 13 44 396 97 437 8.85e-41 150
Msa0042120 MtrunA17_Chr8g0339451 28.760 379 224 12 52 399 96 459 1.06e-40 150
Msa0042120 MtrunA17_Chr6g0462541 30.084 359 196 12 78 407 135 467 1.15e-40 150
Msa0042120 MtrunA17_Chr7g0232411 35.227 264 134 10 157 396 208 458 1.34e-40 150
Msa0042120 MtrunA17_Chr8g0335161 33.977 259 141 6 158 397 213 460 1.64e-40 150
Msa0042120 MtrunA17_Chr7g0243871 32.491 277 149 8 152 404 211 473 2.41e-40 149
Msa0042120 MtrunA17_Chr8g0339631 28.460 383 229 14 57 410 109 475 2.48e-40 149
Msa0042120 MtrunA17_Chr8g0335141 33.333 267 148 6 157 404 214 469 3.53e-40 149
Msa0042120 MtrunA17_Chr7g0232391 34.848 264 135 10 157 396 208 458 3.82e-40 149
Msa0042120 MtrunA17_Chr4g0014061 34.268 321 163 13 105 396 164 465 6.27e-40 148
Msa0042120 MtrunA17_Chr6g0462531 30.154 325 198 8 85 392 141 453 9.32e-40 147
Msa0042120 MtrunA17_Chr7g0243681 30.159 378 213 14 60 404 121 480 1.17e-39 148
Msa0042120 MtrunA17_Chr5g0448521 32.000 275 150 7 146 392 191 456 1.24e-39 147
Msa0042120 MtrunA17_Chr6g0486251 31.698 265 144 7 157 399 211 460 1.50e-39 147
Msa0042120 MtrunA17_Chr6g0486201 31.698 265 144 7 157 399 211 460 1.50e-39 147
Msa0042120 MtrunA17_Chr3g0112761 30.791 354 224 10 54 396 99 442 2.35e-39 146
Msa0042120 MtrunA17_Chr7g0243771 29.867 375 219 13 60 404 116 476 2.46e-39 147
Msa0042120 MtrunA17_Chr4g0066261 27.569 399 243 16 39 405 99 483 2.77e-39 147
Msa0042120 MtrunA17_Chr7g0243931 29.056 413 245 17 28 404 91 491 3.40e-39 147
Msa0042120 MtrunA17_Chr8g0347281 32.692 260 143 5 157 396 218 465 3.89e-39 146
Msa0042120 MtrunA17_Chr6g0462551 34.444 270 150 8 157 410 213 471 5.40e-39 146
Msa0042120 MtrunA17_Chr7g0243801 29.600 375 220 13 60 404 117 477 6.69e-39 145
Msa0042120 MtrunA17_Chr7g0265141 30.295 373 223 12 59 402 120 484 1.01e-38 145
Msa0042120 MtrunA17_Chr8g0339601 32.857 280 149 8 147 399 59 326 1.15e-38 142
Msa0042120 MtrunA17_Chr8g0347271 31.923 260 145 5 157 396 219 466 1.41e-38 145
Msa0042120 MtrunA17_Chr7g0243851 33.212 274 159 9 153 404 172 443 1.97e-38 144
Msa0042120 MtrunA17_Chr7g0232401 33.969 262 143 6 150 392 206 456 2.05e-38 144
Msa0042120 MtrunA17_Chr8g0355221 28.684 380 236 12 61 413 125 496 2.21e-38 144
Msa0042120 MtrunA17_Chr8g0361371 28.646 384 219 12 60 409 114 476 5.78e-38 143
Msa0042120 MtrunA17_Chr8g0366391 28.926 363 237 10 60 404 119 478 6.36e-38 143
Msa0042120 MtrunA17_Chr5g0442511 31.615 291 160 8 142 404 215 494 6.46e-38 143
Msa0042120 MtrunA17_Chr6g0462571 31.939 263 157 5 157 407 213 465 7.10e-38 142
Msa0042120 MtrunA17_Chr6g0463851 32.353 238 136 5 191 405 249 484 1.07e-37 142
Msa0042120 MtrunA17_Chr4g0060511 28.947 380 220 15 60 404 124 488 1.23e-37 142
Msa0042120 MtrunA17_Chr5g0431441 28.011 357 235 8 59 403 119 465 1.42e-37 142
Msa0042120 MtrunA17_Chr5g0431361 28.771 358 231 9 57 403 109 453 1.43e-37 141
Msa0042120 MtrunA17_Chr6g0449931 33.962 265 137 6 157 396 209 460 2.04e-37 141
Msa0042120 MtrunA17_Chr5g0442581 31.879 298 159 10 149 411 203 491 2.15e-37 142
Msa0042120 MtrunA17_Chr1g0153451 29.808 312 169 8 123 397 159 457 2.31e-37 141
Msa0042120 MtrunA17_Chr5g0429711 34.902 255 150 8 157 403 215 461 2.37e-37 141
Msa0042120 MtrunA17_Chr5g0431401 30.337 356 224 11 57 403 108 448 2.64e-37 140
Msa0042120 MtrunA17_Chr5g0403641 29.630 270 162 5 157 402 236 501 3.60e-37 141
Msa0042120 MtrunA17_Chr7g0232331 27.436 390 221 12 53 405 104 468 3.81e-37 140
Msa0042120 MtrunA17_Chr7g0235051 31.734 271 162 6 153 402 184 452 3.92e-37 140
Msa0042120 MtrunA17_Chr5g0412131 32.443 262 157 4 157 407 221 473 4.61e-37 140
Msa0042120 MtrunA17_Chr7g0243951 28.495 372 231 15 60 404 121 484 6.04e-37 140
Msa0042120 MtrunA17_Chr6g0459311 31.154 260 148 5 157 397 218 465 6.15e-37 140
Msa0042120 MtrunA17_Chr5g0412111 33.977 259 154 6 157 407 216 465 6.86e-37 140
Msa0042120 MtrunA17_Chr5g0431421 30.812 357 221 13 57 403 108 448 7.10e-37 139
Msa0042120 MtrunA17_Chr7g0275681 29.134 381 230 16 52 406 117 483 7.49e-37 140
Msa0042120 MtrunA17_Chr1g0179901 31.636 275 161 6 153 403 222 493 7.52e-37 140
Msa0042120 MtrunA17_Chr5g0431371 31.111 360 216 12 57 403 108 448 7.69e-37 139
Msa0042120 MtrunA17_Chr8g0370941 31.392 309 155 9 150 413 202 498 8.24e-37 140
Msa0042120 MtrunA17_Chr6g0454351 27.174 368 221 9 57 403 123 464 8.50e-37 139
Msa0042120 MtrunA17_Chr7g0265101 31.387 274 164 8 155 406 218 489 1.10e-36 140
Msa0042120 MtrunA17_Chr5g0429681 36.111 252 134 9 157 392 248 488 1.13e-36 140
Msa0042120 MtrunA17_Chr6g0463861 32.353 238 136 5 191 405 240 475 1.24e-36 139
Msa0042120 MtrunA17_Chr5g0432731 34.263 251 155 6 157 403 52 296 1.38e-36 135
Msa0042120 MtrunA17_Chr4g0044501 29.086 361 234 11 60 403 120 475 1.38e-36 139
Msa0042120 MtrunA17_Chr4g0072761 27.528 356 235 6 52 401 112 450 1.61e-36 139
Msa0042120 MtrunA17_Chr8g0336731 33.209 268 135 8 157 397 234 484 1.99e-36 139
Msa0042120 MtrunA17_Chr4g0066131 27.865 384 233 13 50 405 109 476 2.07e-36 139
Msa0042120 MtrunA17_Chr8g0336741 33.208 265 139 8 157 397 215 465 3.58e-36 138
Msa0042120 MtrunA17_Chr3g0106231 29.700 367 241 8 57 414 109 467 4.00e-36 138
Msa0042120 MtrunA17_Chr1g0165701 27.835 388 249 12 40 404 105 484 4.38e-36 138
Msa0042120 MtrunA17_Chr6g0462521 29.499 339 196 10 73 392 125 439 4.51e-36 137
Msa0042120 MtrunA17_Chr5g0442541 32.975 279 148 9 142 392 187 454 5.83e-36 137
Msa0042120 MtrunA17_Chr7g0218821 28.767 365 220 12 50 400 109 447 7.08e-36 137
Msa0042120 MtrunA17_Chr8g0336691 35.955 267 131 10 157 397 1121 1373 7.10e-36 140
Msa0042120 MtrunA17_Chr8g0336691 31.488 289 162 6 147 412 205 480 4.25e-35 138
Msa0042120 MtrunA17_Chr8g0336691 34.201 269 145 7 151 412 676 919 8.17e-35 137
Msa0042120 MtrunA17_Chr2g0307961 29.396 364 227 12 57 403 118 468 7.15e-36 137
Msa0042120 MtrunA17_Chr4g0066151 28.052 385 229 14 50 404 114 480 7.84e-36 137
Msa0042120 MtrunA17_Chr5g0442561 30.466 279 149 8 158 403 210 476 1.05e-35 137
Msa0042120 MtrunA17_Chr3g0079731 32.616 279 147 7 149 396 205 473 1.54e-35 136
Msa0042120 MtrunA17_Chr7g0265051 31.136 273 165 8 155 406 217 487 2.30e-35 136
Msa0042120 MtrunA17_Chr7g0243861 32.734 278 155 10 153 404 217 488 2.51e-35 136
Msa0042120 MtrunA17_Chr8g0336651 32.836 268 136 8 157 397 208 458 3.16e-35 138
Msa0042120 MtrunA17_Chr8g0336651 32.714 269 139 7 157 397 983 1237 1.78e-33 133
Msa0042120 MtrunA17_Chr8g0336651 31.868 273 150 8 147 412 538 781 3.49e-30 123
Msa0042120 MtrunA17_Chr7g0243781 31.047 277 156 9 152 404 211 476 3.28e-35 135
Msa0042120 MtrunA17_Chr7g0232341 27.559 381 214 13 53 396 104 459 4.86e-35 135
Msa0042120 MtrunA17_Chr8g0374941 33.476 233 129 8 197 405 1189 1419 4.98e-35 137
Msa0042120 MtrunA17_Chr8g0374941 28.522 291 172 10 127 385 640 926 1.82e-28 118
Msa0042120 MtrunA17_Chr8g0374941 31.308 214 121 8 197 386 251 462 1.58e-26 112
Msa0042120 MtrunA17_Chr5g0412101 32.422 256 157 4 158 404 223 471 5.48e-35 135
Msa0042120 MtrunA17_Chr7g0275511 33.202 253 131 7 182 410 245 483 7.33e-35 134
Msa0042120 MtrunA17_Chr7g0218831 32.889 225 129 7 182 400 228 436 7.45e-35 134
Msa0042120 MtrunA17_Chr8g0339441 34.762 210 113 3 212 399 218 425 7.85e-35 134
Msa0042120 MtrunA17_Chr1g0173121 32.114 246 142 5 174 405 230 464 1.08e-34 134
Msa0042120 MtrunA17_Chr5g0442601 26.667 390 228 12 41 392 495 864 1.49e-34 136
Msa0042120 MtrunA17_Chr5g0442601 36.126 191 92 7 178 345 162 345 3.30e-28 117
Msa0042120 MtrunA17_Chr5g0442491 29.781 319 169 11 127 403 173 478 1.51e-34 134
Msa0042120 MtrunA17_Chr7g0243911 35.176 199 118 3 208 397 18 214 1.58e-34 127
Msa0042120 MtrunA17_Chr4g0066221 34.583 240 128 8 191 405 247 482 1.79e-34 133
Msa0042120 MtrunA17_Chr4g0072771 27.049 366 238 5 45 401 118 463 2.07e-34 133
Msa0042120 MtrunA17_Chr8g0374901 33.047 233 130 6 197 405 250 480 2.33e-34 133
Msa0042120 MtrunA17_Chr4g0044521 31.090 312 176 12 107 392 157 455 2.49e-34 133
Msa0042120 MtrunA17_Chr8g0334831 32.313 294 153 7 149 409 204 484 4.28e-34 132
Msa0042120 MtrunA17_Chr7g0243711 29.967 307 176 9 134 404 14 317 4.99e-34 129
Msa0042120 MtrunA17_Chr7g0265041 27.506 429 257 18 13 406 82 491 5.34e-34 132
Msa0042120 MtrunA17_Chr4g0042891 29.532 342 203 10 87 404 139 466 5.80e-34 132
Msa0042120 MtrunA17_Chr5g0442521 30.137 292 163 9 142 403 195 475 8.28e-34 131
Msa0042120 MtrunA17_Chr5g0416741 27.322 366 241 10 60 404 123 484 8.48e-34 132
Msa0042120 MtrunA17_Chr4g0066281 31.071 280 161 11 153 406 196 469 8.57e-34 131
Msa0042120 MtrunA17_Chr6g0454371 36.207 174 99 2 236 403 3 170 9.83e-34 124
Msa0042120 MtrunA17_Chr7g0218841 32.444 225 130 6 182 400 229 437 1.06e-33 130
Msa0042120 MtrunA17_Chr1g0153461 37.019 208 104 5 212 397 4 206 1.09e-33 125
Msa0042120 MtrunA17_Chr2g0302991 30.877 285 165 7 142 405 191 464 1.53e-33 130
Msa0042120 MtrunA17_Chr5g0409591 30.479 292 163 9 148 408 204 486 1.71e-33 130
Msa0042120 MtrunA17_Chr4g0011051 28.141 398 210 17 57 405 119 489 2.94e-33 130
Msa0042120 MtrunA17_Chr1g0159551 34.272 213 120 4 210 405 252 461 3.33e-33 129
Msa0042120 MtrunA17_Chr4g0066171 28.244 393 231 19 45 405 105 478 3.74e-33 130
Msa0042120 MtrunA17_Chr7g0218311 27.202 386 223 12 57 405 121 485 3.93e-33 130
Msa0042120 MtrunA17_Chr8g0374971 32.719 217 123 6 212 405 266 482 5.98e-33 129
Msa0042120 MtrunA17_Chr8g0355011 35.751 193 111 3 221 406 179 365 6.48e-33 127
Msa0042120 MtrunA17_Chr6g0454231 33.333 252 122 7 157 403 8 218 6.79e-33 129
Msa0042120 MtrunA17_Chr5g0401851 28.000 375 228 15 61 404 121 484 8.05e-33 129
Msa0042120 MtrunA17_Chr4g0066201 28.431 408 238 19 26 404 93 475 8.83e-33 129
Msa0042120 MtrunA17_Chr7g0265151 28.413 271 172 6 155 403 213 483 2.17e-32 127
Msa0042120 MtrunA17_Chr3g0106251 32.171 258 162 5 157 410 52 300 3.61e-32 124
Msa0042120 MtrunA17_Chr7g0265111 32.301 226 132 6 199 403 290 515 3.83e-32 127
Msa0042120 MtrunA17_Chr7g0243611 34.146 205 120 6 155 346 77 279 6.01e-32 122
Msa0042120 MtrunA17_Chr5g0448551 28.354 328 199 10 33 340 82 393 7.48e-32 125
Msa0042120 MtrunA17_Chr2g0302961 30.357 280 163 7 147 405 199 467 9.21e-32 125
Msa0042120 MtrunA17_Chr4g0042931 29.900 301 188 9 119 404 172 464 1.10e-31 125
Msa0042120 MtrunA17_Chr8g0382021 32.701 211 125 3 212 405 280 490 4.00e-31 124
Msa0042120 MtrunA17_Chr5g0410941 31.321 265 156 7 163 405 231 491 7.40e-31 123
Msa0042120 MtrunA17_Chr4g0044481 34.649 228 129 8 153 370 206 423 9.25e-31 122
Msa0042120 MtrunA17_Chr8g0334851 25.199 377 234 11 53 399 107 465 1.10e-30 122
Msa0042120 MtrunA17_Chr5g0419761 26.410 390 237 13 48 403 112 485 1.33e-30 122
Msa0042120 MtrunA17_Chr2g0294921 27.225 382 231 14 57 405 265 632 2.19e-30 123
Msa0042120 MtrunA17_Chr7g0243761 26.852 324 201 11 60 356 121 435 2.93e-30 121
Msa0042120 MtrunA17_Chr6g0463891 27.000 400 260 13 30 404 93 485 3.07e-30 122
Msa0042120 MtrunA17_Chr8g0334861 30.859 256 149 6 157 392 205 452 3.75e-30 121
Msa0042120 MtrunA17_Chr5g0440421 31.734 271 154 9 158 403 229 493 4.23e-30 121
Msa0042120 MtrunA17_Chr2g0294941 26.184 359 220 12 60 386 17 362 4.78e-30 119
Msa0042120 MtrunA17_Chr8g0350881 32.189 233 132 6 197 405 252 482 9.41e-30 120
Msa0042120 MtrunA17_Chr2g0329111 27.344 384 220 16 60 405 119 481 9.59e-30 120
Msa0042120 MtrunA17_Chr2g0294931 26.385 379 238 12 57 405 116 483 1.87e-29 119
Msa0042120 MtrunA17_Chr5g0428081 25.581 387 232 12 57 405 113 481 2.30e-29 119
Msa0042120 MtrunA17_Chr5g0420801 29.434 265 159 7 158 408 213 463 3.20e-29 118
Msa0042120 MtrunA17_Chr6g0454251 29.000 300 184 9 42 315 98 394 7.70e-29 116
Msa0042120 MtrunA17_Chr5g0416821 24.742 388 251 11 40 404 105 474 8.59e-29 117
Msa0042120 MtrunA17_Chr8g0369341 27.922 308 183 11 116 408 190 473 1.09e-28 117
Msa0042120 MtrunA17_Chr7g0243811 33.500 200 116 6 152 341 186 378 3.91e-28 114
Msa0042120 MtrunA17_Chr8g0374931 25.397 378 243 12 57 405 116 483 7.95e-28 115
Msa0042120 MtrunA17_Chr6g0482061 28.383 303 172 12 115 391 184 467 4.83e-27 112
Msa0042120 MtrunA17_Chr8g0336261 37.956 137 73 2 236 366 3 133 4.89e-27 105
Msa0042120 MtrunA17_Chr3g0079711 35.556 180 94 4 238 396 3 181 1.28e-26 105
Msa0042120 MtrunA17_Chr8g0336251 33.816 207 115 5 210 404 267 463 2.75e-25 107
Msa0042120 MtrunA17_Chr8g0336321 33.816 207 115 5 210 404 267 463 3.12e-25 107
Msa0042120 MtrunA17_Chr5g0431431 37.288 177 103 4 157 333 156 324 5.96e-25 105
Msa0042120 MtrunA17_Chr5g0427571 36.257 171 98 3 210 372 101 268 1.31e-24 102
Msa0042120 MtrunA17_Chr7g0232351 32.222 180 92 5 157 315 208 378 2.17e-24 103
Msa0042120 MtrunA17_Chr8g0361411 25.385 390 249 15 41 405 83 455 1.49e-23 102
Msa0042120 MtrunA17_Chr2g0278721 31.325 249 154 8 141 380 203 443 1.62e-23 103
Msa0042120 MtrunA17_Chr2g0278721 31.839 223 140 6 158 375 734 949 4.11e-22 99.0
Msa0042120 MtrunA17_Chr4g0069611 32.787 244 146 8 140 375 200 433 1.93e-23 102
Msa0042120 MtrunA17_Chr4g0066141 37.255 153 85 5 263 404 200 352 2.64e-23 100
Msa0042120 MtrunA17_Chr7g0250021 29.918 244 155 7 39 274 92 327 4.13e-23 99.4
Msa0042120 MtrunA17_Chr8g0367221 38.411 151 73 4 213 354 1057 1196 9.95e-23 101
Msa0042120 MtrunA17_Chr8g0367221 27.757 263 160 8 157 406 1498 1743 9.95e-23 101
Msa0042120 MtrunA17_Chr8g0367221 37.500 160 80 4 204 354 261 409 8.71e-22 98.6
Msa0042120 MtrunA17_Chr2g0278741 32.468 231 140 8 158 380 303 525 1.23e-22 100
Msa0042120 MtrunA17_Chr1g0196851 29.644 253 140 8 148 380 242 476 7.69e-22 97.4
Msa0042120 MtrunA17_Chr8g0337381 39.855 138 69 5 280 413 6 133 1.14e-21 90.1
Msa0042120 MtrunA17_Chr2g0302851 31.140 228 139 6 157 375 216 434 2.36e-21 95.9
Msa0042120 MtrunA17_Chr4g0040691 32.227 211 116 7 161 359 217 412 4.58e-21 95.1
Msa0042120 MtrunA17_Chr7g0231631 29.289 239 137 7 183 404 37 260 6.34e-21 92.0
Msa0042120 MtrunA17_Chr4g0029131 27.200 250 150 7 148 380 202 436 8.69e-21 94.7
Msa0042120 MtrunA17_Chr7g0241801 31.336 217 129 8 168 380 206 406 1.39e-20 93.2
Msa0042120 MtrunA17_Chr6g0466841 32.143 224 140 7 158 375 219 436 2.46e-20 92.8
Msa0042120 MtrunA17_Chr4g0039881 30.736 231 144 7 158 380 193 415 3.07e-20 92.4
Msa0042120 MtrunA17_Chr2g0283041 27.381 252 155 7 142 380 197 433 8.05e-20 91.3
Msa0042120 MtrunA17_Chr7g0241781 31.163 215 128 8 170 380 208 406 1.22e-19 90.5
Msa0042120 MtrunA17_Chr4g0029151 26.255 259 153 7 142 380 204 444 3.45e-19 89.4
Msa0042120 MtrunA17_Chr6g0466831 31.169 231 147 7 158 382 219 443 3.81e-19 89.4
Msa0042120 MtrunA17_Chr4g0040711 30.332 211 120 7 161 359 217 412 5.29e-19 88.6
Msa0042120 MtrunA17_Chr8g0357361 29.703 202 126 7 150 341 57 252 1.18e-18 85.5
Msa0042120 MtrunA17_Chr6g0464091 30.435 230 146 6 158 380 226 448 4.14e-18 86.3
Msa0042120 MtrunA17_Chr3g0092031 33.529 170 106 4 211 375 3 170 4.72e-17 79.3
Msa0042120 MtrunA17_Chr7g0243731 39.241 79 45 2 272 349 4 80 1.70e-15 71.2
Msa0042120 MtrunA17_Chr6g0453981 31.138 167 97 5 102 255 40 201 2.75e-15 74.7
Msa0042120 MtrunA17_Chr2g0319791 29.148 223 132 7 168 379 227 434 4.01e-15 77.0
Msa0042120 MtrunA17_Chr2g0319731 31.220 205 114 7 163 355 236 425 2.34e-14 74.7
Msa0042120 MtrunA17_Chr2g0319751 29.612 206 124 7 163 359 696 889 1.24e-13 73.2
Msa0042120 MtrunA17_Chr2g0319751 25.893 224 127 8 163 379 219 410 5.41e-13 70.9
Msa0042120 MtrunA17_Chr2g0319761 30.899 178 111 5 214 380 259 435 1.71e-13 72.0
Msa0042120 MtrunA17_Chr2g0319801 28.767 219 129 7 149 355 205 408 1.19e-11 66.2
Msa0042120 MtrunA17_Chr2g0321331 31.852 135 84 2 193 319 65 199 3.32e-11 63.5
Msa0042120 MtrunA17_Chr2g0279741 39.241 79 46 1 207 283 29 107 7.16e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042120 AT4G15480.1 47.754 423 197 8 1 403 60 478 4.32e-129 381
Msa0042120 AT3G21560.1 44.931 434 212 8 1 412 53 481 8.71e-125 370
Msa0042120 AT4G15500.1 45.047 424 215 10 3 414 57 474 7.61e-119 354
Msa0042120 AT4G15490.1 42.459 431 220 10 1 410 50 473 4.05e-114 342
Msa0042120 AT2G23260.1 36.623 385 209 10 36 403 87 453 2.30e-73 237
Msa0042120 AT2G43820.1 33.573 417 249 14 3 406 48 449 9.60e-71 229
Msa0042120 AT2G23250.1 36.141 368 221 8 40 403 78 435 9.12e-70 227
Msa0042120 AT1G05680.1 33.002 403 246 11 10 400 59 449 2.40e-65 216
Msa0042120 AT2G31790.1 33.053 357 226 6 54 400 100 453 2.54e-65 216
Msa0042120 AT1G05675.1 34.959 369 216 9 46 400 91 449 3.59e-65 215
Msa0042120 AT4G15550.1 32.518 409 243 10 13 402 78 472 2.03e-64 214
Msa0042120 AT4G14090.1 34.135 416 243 12 5 402 52 454 2.08e-64 213
Msa0042120 AT2G43840.2 32.976 373 230 10 40 404 87 447 3.42e-64 213
Msa0042120 AT2G43840.1 32.976 373 230 10 40 404 87 447 1.17e-63 211
Msa0042120 AT2G31750.1 33.333 402 233 14 26 405 68 456 1.24e-60 203
Msa0042120 AT2G31750.2 33.333 402 233 14 26 405 68 456 2.19e-60 204
Msa0042120 AT1G05560.1 33.495 412 227 12 26 410 67 458 3.49e-60 202
Msa0042120 AT1G05560.2 33.495 412 227 12 26 410 117 508 1.36e-59 202
Msa0042120 AT1G22340.1 33.073 384 220 11 50 404 112 487 1.59e-59 201
Msa0042120 AT1G24100.1 31.496 381 245 9 36 405 85 460 2.26e-56 192
Msa0042120 AT1G22400.1 31.522 368 219 11 41 385 105 462 5.31e-56 192
Msa0042120 AT1G05530.1 31.111 405 235 10 26 403 67 454 2.08e-55 190
Msa0042120 AT1G22380.1 31.892 370 221 10 57 403 119 480 2.63e-55 190
Msa0042120 AT1G78270.1 31.034 377 229 11 50 403 112 480 2.55e-54 187
Msa0042120 AT2G15490.3 29.612 412 261 10 13 406 80 480 1.21e-53 186
Msa0042120 AT2G15490.1 29.398 415 261 10 13 406 80 483 3.06e-53 184
Msa0042120 AT1G22360.1 29.351 385 239 10 44 403 101 477 5.00e-53 184
Msa0042120 AT2G36970.1 29.620 368 225 9 57 406 122 473 1.83e-51 180
Msa0042120 AT1G22360.2 28.571 385 230 10 44 403 101 465 3.66e-50 176
Msa0042120 AT2G15480.1 28.710 411 266 11 13 406 83 483 6.82e-50 176
Msa0042120 AT2G15480.2 27.791 421 267 12 13 406 83 493 4.59e-47 168
Msa0042120 AT1G22370.2 28.871 381 241 10 44 403 104 475 1.27e-46 167
Msa0042120 AT4G34131.1 29.238 407 260 14 13 402 83 478 1.49e-43 159
Msa0042120 AT4G34135.1 29.829 409 258 12 13 403 84 481 6.19e-43 157
Msa0042120 AT5G59580.1 29.178 377 234 12 41 404 92 448 1.30e-42 155
Msa0042120 AT5G17050.1 27.937 383 251 7 36 411 95 459 1.50e-42 155
Msa0042120 AT1G30530.1 28.042 378 248 7 36 405 91 452 1.60e-42 155
Msa0042120 AT4G34138.1 28.810 420 269 14 1 403 72 478 6.19e-42 154
Msa0042120 AT5G14860.1 31.332 383 228 15 41 405 112 477 7.07e-42 154
Msa0042120 AT2G36770.1 32.841 271 162 7 155 406 222 491 1.52e-41 153
Msa0042120 AT2G28080.1 29.477 363 227 9 58 406 127 474 1.52e-41 153
Msa0042120 AT1G22370.1 30.612 294 184 6 122 403 20 305 2.09e-41 149
Msa0042120 AT5G59590.1 28.986 414 238 13 23 403 59 449 4.07e-41 151
Msa0042120 AT2G36780.1 33.088 272 162 7 155 407 222 492 7.75e-41 151
Msa0042120 AT5G17040.1 26.882 372 256 5 36 405 84 441 2.41e-40 149
Msa0042120 AT5G17040.2 33.463 257 158 4 151 405 94 339 2.41e-40 147
Msa0042120 AT3G11340.1 38.384 198 108 3 208 397 247 438 3.42e-40 149
Msa0042120 AT2G36750.1 34.815 270 156 8 155 405 217 485 4.36e-40 149
Msa0042120 AT1G10400.1 31.519 349 221 10 58 397 117 456 5.32e-40 149
Msa0042120 AT3G55710.1 36.800 250 140 5 157 397 208 448 8.42e-40 148
Msa0042120 AT3G55700.1 37.154 253 129 7 157 397 210 444 1.13e-39 147
Msa0042120 AT3G21790.1 27.536 414 229 11 41 408 95 483 1.22e-39 148
Msa0042120 AT3G46670.1 29.032 372 211 13 58 404 106 449 2.06e-39 147
Msa0042120 AT3G16520.3 35.206 267 146 8 150 402 205 458 3.02e-39 146
Msa0042120 AT4G01070.1 32.955 264 144 5 157 398 210 462 3.71e-39 147
Msa0042120 AT3G53160.1 31.136 273 166 8 155 407 216 486 5.65e-39 146
Msa0042120 AT3G46660.1 29.570 372 220 11 53 404 107 456 6.13e-39 145
Msa0042120 AT5G17030.1 31.765 255 161 4 151 403 212 455 8.70e-39 145
Msa0042120 AT2G30140.1 30.168 358 229 8 54 403 107 451 1.16e-38 145
Msa0042120 AT2G36800.1 34.050 279 156 10 155 410 221 494 1.47e-38 145
Msa0042120 AT3G46700.1 27.945 365 224 9 58 404 102 445 1.67e-38 144
Msa0042120 AT2G30140.2 29.722 360 227 7 54 403 107 450 2.55e-38 144
Msa0042120 AT3G46680.1 30.411 365 200 13 58 397 108 443 2.66e-38 144
Msa0042120 AT2G36760.1 32.841 271 162 8 155 406 222 491 2.92e-38 144
Msa0042120 AT5G05870.1 29.008 393 221 13 41 403 90 454 3.30e-38 144
Msa0042120 AT3G46650.1 29.661 354 204 9 58 399 108 428 4.53e-38 143
Msa0042120 AT3G46690.1 28.771 358 216 10 58 397 107 443 7.69e-38 142
Msa0042120 AT3G02100.1 37.004 227 132 4 180 406 247 462 1.19e-37 142
Msa0042120 AT2G30150.1 28.729 362 233 10 55 405 91 438 2.73e-37 140
Msa0042120 AT3G16520.2 35.714 252 135 8 150 387 205 443 2.74e-37 141
Msa0042120 AT3G16520.1 35.714 252 135 8 150 387 205 443 3.15e-37 141
Msa0042120 AT5G66690.1 30.827 266 139 5 157 392 204 454 3.21e-37 141
Msa0042120 AT3G50740.1 31.321 265 139 6 157 391 209 460 4.01e-37 141
Msa0042120 AT2G30150.2 28.729 362 233 10 55 405 107 454 4.20e-37 140
Msa0042120 AT2G16890.2 28.729 362 233 10 58 405 119 469 7.07e-37 140
Msa0042120 AT5G26310.1 29.412 272 145 6 157 396 204 460 1.82e-36 139
Msa0042120 AT4G15280.1 25.445 393 225 8 53 403 107 473 4.52e-36 138
Msa0042120 AT5G03490.1 28.226 372 246 12 41 405 107 464 4.61e-36 138
Msa0042120 AT4G15280.2 25.445 393 225 8 53 403 139 505 8.86e-36 138
Msa0042120 AT1G07250.1 33.591 259 152 6 157 403 222 472 9.22e-36 137
Msa0042120 AT3G21800.1 29.474 285 161 7 149 405 205 477 1.26e-35 137
Msa0042120 AT5G38040.1 25.549 364 242 7 53 403 102 449 2.67e-35 135
Msa0042120 AT3G21760.1 29.710 276 156 6 157 405 218 482 3.24e-35 136
Msa0042120 AT1G01420.1 31.939 263 145 5 157 397 210 460 6.43e-35 135
Msa0042120 AT1G01420.2 31.939 263 145 5 157 397 213 463 7.76e-35 135
Msa0042120 AT2G36790.1 32.616 279 160 8 155 410 221 494 9.61e-35 135
Msa0042120 AT1G51210.1 29.211 380 240 12 8 375 67 429 1.10e-34 134
Msa0042120 AT4G15260.1 28.571 329 174 10 105 403 57 354 1.89e-34 131
Msa0042120 AT3G21750.1 34.091 220 113 4 211 403 254 468 2.66e-34 133
Msa0042120 AT3G46720.1 35.586 222 128 4 177 397 227 434 2.71e-34 132
Msa0042120 AT2G29740.1 31.727 249 147 6 157 392 225 463 2.78e-34 133
Msa0042120 AT3G22250.1 35.193 233 129 8 160 376 215 441 3.19e-34 132
Msa0042120 AT4G36770.1 31.418 261 130 8 157 386 204 446 6.99e-34 132
Msa0042120 AT2G29730.1 30.837 227 144 5 183 403 243 462 1.05e-33 131
Msa0042120 AT1G01390.1 33.600 250 126 7 157 377 210 448 1.92e-33 131
Msa0042120 AT1G01390.2 33.600 250 126 7 157 377 227 465 2.24e-33 131
Msa0042120 AT5G38010.1 28.045 353 225 8 58 397 111 447 2.44e-33 130
Msa0042120 AT2G29710.1 31.602 231 144 6 180 403 239 462 3.83e-33 130
Msa0042120 AT1G07260.1 30.739 257 163 5 157 403 220 471 4.12e-33 130
Msa0042120 AT3G21780.1 29.818 275 155 7 157 405 208 470 4.35e-33 130
Msa0042120 AT5G05880.1 34.000 200 116 3 206 397 251 442 8.26e-33 129
Msa0042120 AT5G05860.1 35.266 207 118 4 205 403 249 447 1.51e-32 128
Msa0042120 AT1G73880.1 30.502 259 160 7 155 403 218 466 1.05e-31 126
Msa0042120 AT2G18560.1 31.698 265 143 6 157 396 118 369 1.09e-31 124
Msa0042120 AT2G29750.1 31.154 260 155 7 157 403 225 473 1.21e-31 126
Msa0042120 AT2G18570.1 30.534 262 150 7 157 396 208 459 4.20e-31 124
Msa0042120 AT2G26480.1 26.509 381 240 13 35 397 81 439 4.00e-29 118
Msa0042120 AT5G05900.1 32.143 252 150 8 157 403 212 447 1.61e-28 116
Msa0042120 AT5G05890.1 29.600 250 154 6 163 403 216 452 2.90e-28 116
Msa0042120 AT5G12890.1 30.108 279 152 9 158 410 227 488 3.37e-28 116
Msa0042120 AT2G16890.3 28.296 311 199 9 58 355 119 418 3.84e-28 115
Msa0042120 AT3G53150.1 25.128 390 237 12 57 403 132 509 9.48e-28 115
Msa0042120 AT1G07240.1 27.157 313 188 10 114 403 180 475 2.10e-27 114
Msa0042120 AT1G06000.1 28.148 270 167 8 152 403 173 433 2.83e-27 113
Msa0042120 AT5G65550.1 27.778 360 219 12 44 380 98 439 2.89e-26 110
Msa0042120 AT5G37950.1 33.136 169 98 3 157 317 184 345 6.94e-24 102
Msa0042120 AT5G37950.2 33.136 169 98 3 157 317 178 339 6.97e-24 102
Msa0042120 AT5G49690.1 30.180 222 143 6 156 375 216 427 4.10e-23 101
Msa0042120 AT4G27570.1 29.617 287 150 11 139 404 189 444 5.83e-22 97.8
Msa0042120 AT4G27560.1 29.268 287 151 11 139 404 189 444 5.69e-21 95.1
Msa0042120 AT5G54060.1 27.273 297 186 9 120 403 183 462 2.83e-20 93.2
Msa0042120 AT5G54010.1 24.863 366 224 11 61 405 110 445 3.38e-19 89.7
Msa0042120 AT1G64910.1 27.481 262 146 9 159 399 199 437 7.11e-19 88.6
Msa0042120 AT5G53990.1 29.534 193 112 5 159 340 199 378 3.53e-18 86.7
Msa0042120 AT3G29630.1 27.059 255 159 7 157 397 197 438 1.13e-17 85.1
Msa0042120 AT2G22590.1 27.386 241 144 7 173 401 243 464 4.35e-17 83.6
Msa0042120 AT2G23210.1 33.333 219 126 9 20 227 65 274 1.11e-16 80.5
Msa0042120 AT1G64920.1 25.461 271 170 9 157 410 197 452 1.67e-16 81.6
Msa0042120 AT1G50580.1 27.378 347 216 11 61 394 110 433 1.73e-16 81.6
Msa0042120 AT3G29630.2 27.982 218 143 5 191 397 198 412 2.50e-15 77.8
Msa0042120 AT2G22930.1 28.061 196 115 5 157 340 197 378 1.09e-14 75.9
Msa0042120 AT4G09500.2 28.718 195 115 5 157 340 197 378 3.66e-14 74.3
Msa0042120 AT4G01070.2 32.653 147 68 4 157 282 210 346 5.31e-14 73.2
Msa0042120 AT4G34135.2 26.693 251 165 9 13 255 84 323 1.09e-13 72.0
Msa0042120 AT4G09500.1 32.283 127 78 2 222 340 227 353 5.67e-12 67.4

Find 90 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGAATCTTGATGTATTTA+TGG 0.173666 1_1:+72698786 Msa0042120:CDS
TTTAATCCCTATCCAATTAT+AGG 0.176501 1_1:+72698007 Msa0042120:CDS
GCAATTTCGTTCACTTGTTC+TGG 0.230533 1_1:-72698313 None:intergenic
TTGTATTGAAGGACTATAAA+AGG 0.247829 1_1:-72697959 None:intergenic
TCTGTAGTTTACATCTCTTT+TGG 0.250780 1_1:+72698271 Msa0042120:CDS
TAGATTGGGTTATAGTCTTA+TGG 0.268538 1_1:+72698621 Msa0042120:CDS
TGAGGTGAAGAAGTGCTTAA+TGG 0.285517 1_1:+72698666 Msa0042120:CDS
TTGTATATGATACATGAAAT+TGG 0.292427 1_1:-72697776 None:intergenic
ATAATTGGATAGGGATTAAA+AGG 0.292628 1_1:-72698004 None:intergenic
CAAGTGAACGAAATTGCATT+TGG 0.293940 1_1:+72698319 Msa0042120:CDS
CGTTCACTTGTTCTGGATGA+TGG 0.309783 1_1:-72698306 None:intergenic
TCATTTGCCTGATGGGTTCT+TGG 0.320489 1_1:+72698390 Msa0042120:CDS
TTAATCCCTATCCAATTATA+GGG 0.333727 1_1:+72698008 Msa0042120:CDS
TTAAAAGGATGTATTAAATC+TGG 0.340931 1_1:-72697989 None:intergenic
GGCAAATGAACATCAATATA+AGG 0.345702 1_1:-72697938 None:intergenic
AGCGTGATTCTTGATCATTT+TGG 0.347200 1_1:-72697741 None:intergenic
CTGGGATTTCATTGTATTGA+AGG 0.352702 1_1:-72697970 None:intergenic
ACGATGGAAGCAACTGCTTC+AGG 0.352905 1_1:+72698517 Msa0042120:CDS
TGCTTAATGGAAGCAACAAC+AGG 0.375385 1_1:+72698679 Msa0042120:CDS
GTGTTGGCATTTCCAGCATT+TGG 0.378550 1_1:+72698547 Msa0042120:CDS
AGCAACTGCTTCAGGAGTTC+CGG 0.383223 1_1:+72698525 Msa0042120:CDS
ATATTCTTTCTGCTTTATCA+TGG 0.395852 1_1:+72697840 Msa0042120:CDS
CATGCAGAGCTTGAGCTTGT+AGG 0.410791 1_1:+72697704 Msa0042120:CDS
GATCATTGTTTACTAGATGA+TGG 0.421522 1_1:+72697671 Msa0042120:CDS
TATCGGAGTTGCTAATTTGT+TGG 0.423423 1_1:-72697618 None:intergenic
AAGTGAACGAAATTGCATTT+GGG 0.436277 1_1:+72698320 Msa0042120:CDS
TAAAAGGATGTATTAAATCT+GGG 0.436935 1_1:-72697988 None:intergenic
ATGTAAACTACAGAACCTTT+TGG 0.447088 1_1:-72698262 None:intergenic
CTCAAGCTCTGCATGGTCAA+TGG 0.450170 1_1:-72697696 None:intergenic
AGAGAGGAAAAGTGGTGAAG+TGG 0.450550 1_1:+72698425 Msa0042120:CDS
ACCAGGATCATTTGCCTGAT+GGG 0.452429 1_1:+72698383 Msa0042120:CDS
TTTGGTGTAGGGATTAGATT+GGG 0.453004 1_1:+72698607 Msa0042120:CDS
TCACAAACCCATGGAAGAAA+AGG 0.453406 1_1:-72697800 None:intergenic
AACAAGTGAGAGAGGAAAAG+TGG 0.460758 1_1:+72698417 Msa0042120:CDS
AAGGAAAAGGTACAAGTTTG+TGG 0.460785 1_1:-72697904 None:intergenic
GTGGTGAGTGACCCTATAAT+TGG 0.462235 1_1:-72698019 None:intergenic
ACCCATCAGGCAAATGATCC+TGG 0.473527 1_1:-72698384 None:intergenic
ATTGTTGGGTTCTTGAACAG+AGG 0.474566 1_1:-72698160 None:intergenic
GGTTCTGTTTCTGAAGGAAA+AGG 0.477403 1_1:-72697917 None:intergenic
ATGCAGAGCTTGAGCTTGTA+GGG 0.480677 1_1:+72697705 Msa0042120:CDS
TTCTTGAACAGAGGACCAAT+GGG 0.486504 1_1:-72698151 None:intergenic
GTGGACATAGTTATAGTAAG+TGG 0.487941 1_1:-72697885 None:intergenic
CACCAGGATCATTTGCCTGA+TGG 0.491773 1_1:+72698382 Msa0042120:CDS
GTTTCCTCCAAGAACCCATC+AGG 0.494180 1_1:-72698397 None:intergenic
ATCATGCTCTAGTTCTTCAT+AGG 0.502661 1_1:-72698089 None:intergenic
GAGTGACCCTATAATTGGAT+AGG 0.504181 1_1:-72698014 None:intergenic
TTTGCCTGATGGGTTCTTGG+AGG 0.509956 1_1:+72698393 Msa0042120:CDS
TCAGTCCTCATTAGACCCAT+TGG 0.518801 1_1:+72698136 Msa0042120:CDS
GTTTCGTGACACATTGTGGC+TGG 0.529753 1_1:+72698488 Msa0042120:CDS
GTAAGGTGGTCACCAAATGC+TGG 0.531415 1_1:-72698559 None:intergenic
GTTCTTGAACAGAGGACCAA+TGG 0.531930 1_1:-72698152 None:intergenic
TAGTCTTATGGAAAACAAGT+TGG 0.533092 1_1:+72698633 Msa0042120:CDS
TGCTTCAGGAGTTCCGGTGT+TGG 0.535873 1_1:+72698531 Msa0042120:CDS
GCGGAGGAAGCAGTGGCTGT+CGG 0.537675 1_1:+72698751 Msa0042120:CDS
GGAAGTACTTGATCATCCTT+CGG 0.539328 1_1:+72698459 Msa0042120:CDS
CTGTCGGTGGATCCTCTGAT+CGG 0.544615 1_1:+72698767 Msa0042120:CDS
ATATAAGGTTCTGTTTCTGA+AGG 0.547175 1_1:-72697923 None:intergenic
TGGCTAAACACAAAGCCAAA+AGG 0.552067 1_1:+72698247 Msa0042120:CDS
AAAGCAGCAAGCAATATTCG+AGG 0.558686 1_1:+72698184 Msa0042120:CDS
GAAGTGGAAGAAGGCGGCGG+AGG 0.562698 1_1:+72698735 Msa0042120:CDS
AAATGCAATGAAGTGGAAGA+AGG 0.563659 1_1:+72698726 Msa0042120:CDS
AGTGACCCTATAATTGGATA+GGG 0.564087 1_1:-72698013 None:intergenic
AGTGGTGAAGTGGAGTCCAC+AGG 0.575366 1_1:+72698435 Msa0042120:CDS
GAGGAAGCAGTGGCTGTCGG+TGG 0.576801 1_1:+72698754 Msa0042120:CDS
GAAGGCGGCGGAGGAAGCAG+TGG 0.579163 1_1:+72698744 Msa0042120:CDS
GTGAGGCAACCATCACCTAT+CGG 0.585202 1_1:-72697635 None:intergenic
GATCAAAGAACTCGAAAGTG+AGG 0.602091 1_1:-72697652 None:intergenic
TACATCAAGATTCCGATCAG+AGG 0.604344 1_1:-72698779 None:intergenic
TTAGCAACTCCGATAGGTGA+TGG 0.605196 1_1:+72697626 Msa0042120:CDS
GCATGTTTCGTGACACATTG+TGG 0.605378 1_1:+72698484 Msa0042120:CDS
GAGGACCAATGGGTCTAATG+AGG 0.608384 1_1:-72698141 None:intergenic
ATGATTGTAGTATTATAGAG+TGG 0.612349 1_1:+72698227 Msa0042120:CDS
TTGGAGGAAACAAGTGAGAG+AGG 0.616997 1_1:+72698409 Msa0042120:CDS
CTACAAGCTCAAGCTCTGCA+TGG 0.617772 1_1:-72697703 None:intergenic
AAAGCTACATCACAAACCCA+TGG 0.623753 1_1:-72697809 None:intergenic
CAAGTTGGTAACAAGAGATG+AGG 0.627979 1_1:+72698648 Msa0042120:CDS
GCTTAATGGAAGCAACAACA+GGG 0.628663 1_1:+72698680 Msa0042120:CDS
CAGAGCTTGAGCTTGTAGGG+AGG 0.629545 1_1:+72697708 Msa0042120:CDS
AACAAATTAGCAACTCCGAT+AGG 0.633930 1_1:+72697620 Msa0042120:CDS
GTCACGAAACATGCCACCGA+AGG 0.638096 1_1:-72698475 None:intergenic
AATGAAGTGGAAGAAGGCGG+CGG 0.640843 1_1:+72698732 Msa0042120:CDS
AATGCTGGAAATGCCAACAC+CGG 0.644155 1_1:-72698544 None:intergenic
GGTGAAGTGGAGTCCACAGG+AGG 0.648818 1_1:+72698438 Msa0042120:CDS
TGATCAAGTACTTCCTCCTG+TGG 0.652031 1_1:-72698451 None:intergenic
CAAGTTATTCATATGTGACG+TGG 0.664871 1_1:-72698038 None:intergenic
TGCAATGAAGTGGAAGAAGG+CGG 0.681223 1_1:+72698729 Msa0042120:CDS
AGTACTTGATCATCCTTCGG+TGG 0.685899 1_1:+72698462 Msa0042120:CDS
TGCTGTTGTAAACATTCACA+AGG 0.692223 1_1:+72698825 Msa0042120:CDS
TTGTGGCTGGAATTCAACGA+TGG 0.703619 1_1:+72698501 Msa0042120:CDS
CTTAATGGAAGCAACAACAG+GGG 0.717351 1_1:+72698681 Msa0042120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTGATAGATGTTTT+TGG + chr1_1:72698589-72698608 Msa0042120:CDS 15.0%
!!! AAATTTTTGATAGATGTTTT+TGG + chr1_1:72698589-72698608 Msa0042120:CDS 15.0%
!! TTGTATATGATACATGAAAT+TGG - chr1_1:72697779-72697798 None:intergenic 20.0%
!! TAAAAGGATGTATTAAATCT+GGG - chr1_1:72697991-72698010 None:intergenic 20.0%
!! TTAAAAGGATGTATTAAATC+TGG - chr1_1:72697992-72698011 None:intergenic 20.0%
!!! TAAAATGTTTTGTGTATTAG+TGG + chr1_1:72698063-72698082 Msa0042120:CDS 20.0%
!!! TCAAAAATTTTGCATTTGTA+AGG - chr1_1:72698579-72698598 None:intergenic 20.0%
!! TTGTATATGATACATGAAAT+TGG - chr1_1:72697779-72697798 None:intergenic 20.0%
!! TAAAAGGATGTATTAAATCT+GGG - chr1_1:72697991-72698010 None:intergenic 20.0%
!! TTAAAAGGATGTATTAAATC+TGG - chr1_1:72697992-72698011 None:intergenic 20.0%
!!! TAAAATGTTTTGTGTATTAG+TGG + chr1_1:72698063-72698082 Msa0042120:CDS 20.0%
!!! TCAAAAATTTTGCATTTGTA+AGG - chr1_1:72698579-72698598 None:intergenic 20.0%
! ATATTCTTTCTGCTTTATCA+TGG + chr1_1:72697840-72697859 Msa0042120:CDS 25.0%
! TTGTATTGAAGGACTATAAA+AGG - chr1_1:72697962-72697981 None:intergenic 25.0%
! ATAATTGGATAGGGATTAAA+AGG - chr1_1:72698007-72698026 None:intergenic 25.0%
! TTTAATCCCTATCCAATTAT+AGG + chr1_1:72698007-72698026 Msa0042120:CDS 25.0%
! TTAATCCCTATCCAATTATA+GGG + chr1_1:72698008-72698027 Msa0042120:CDS 25.0%
! ATGATTGTAGTATTATAGAG+TGG + chr1_1:72698227-72698246 Msa0042120:CDS 25.0%
!! ATTCTAAACTCAGATTTTTG+TGG + chr1_1:72698350-72698369 Msa0042120:CDS 25.0%
!! TTCTAAACTCAGATTTTTGT+GGG + chr1_1:72698351-72698370 Msa0042120:CDS 25.0%
!! AAAATTTTGCATTTGTAAGG+TGG - chr1_1:72698576-72698595 None:intergenic 25.0%
! ATATTCTTTCTGCTTTATCA+TGG + chr1_1:72697840-72697859 Msa0042120:CDS 25.0%
! TTGTATTGAAGGACTATAAA+AGG - chr1_1:72697962-72697981 None:intergenic 25.0%
! ATAATTGGATAGGGATTAAA+AGG - chr1_1:72698007-72698026 None:intergenic 25.0%
! TTTAATCCCTATCCAATTAT+AGG + chr1_1:72698007-72698026 Msa0042120:CDS 25.0%
! TTAATCCCTATCCAATTATA+GGG + chr1_1:72698008-72698027 Msa0042120:CDS 25.0%
! ATGATTGTAGTATTATAGAG+TGG + chr1_1:72698227-72698246 Msa0042120:CDS 25.0%
!! ATTCTAAACTCAGATTTTTG+TGG + chr1_1:72698350-72698369 Msa0042120:CDS 25.0%
!! TTCTAAACTCAGATTTTTGT+GGG + chr1_1:72698351-72698370 Msa0042120:CDS 25.0%
!! AAAATTTTGCATTTGTAAGG+TGG - chr1_1:72698576-72698595 None:intergenic 25.0%
GATCATTGTTTACTAGATGA+TGG + chr1_1:72697671-72697690 Msa0042120:CDS 30.0%
! TATACAATCCTTTTCTTCCA+TGG + chr1_1:72697792-72697811 Msa0042120:CDS 30.0%
! ATACAATCCTTTTCTTCCAT+GGG + chr1_1:72697793-72697812 Msa0042120:CDS 30.0%
!! ATATAAGGTTCTGTTTCTGA+AGG - chr1_1:72697926-72697945 None:intergenic 30.0%
GGCAAATGAACATCAATATA+AGG - chr1_1:72697941-72697960 None:intergenic 30.0%
!!! TCTAATGAGGACTGATTTTT+TGG - chr1_1:72698131-72698150 None:intergenic 30.0%
! ATGTAAACTACAGAACCTTT+TGG - chr1_1:72698265-72698284 None:intergenic 30.0%
! TCTGTAGTTTACATCTCTTT+TGG + chr1_1:72698271-72698290 Msa0042120:CDS 30.0%
! CTGTAGTTTACATCTCTTTT+GGG + chr1_1:72698272-72698291 Msa0042120:CDS 30.0%
AAGTGAACGAAATTGCATTT+GGG + chr1_1:72698320-72698339 Msa0042120:CDS 30.0%
!!! TTGATAGATGTTTTTGGTGT+AGG + chr1_1:72698595-72698614 Msa0042120:CDS 30.0%
!!! TGATAGATGTTTTTGGTGTA+GGG + chr1_1:72698596-72698615 Msa0042120:CDS 30.0%
! TAGATTGGGTTATAGTCTTA+TGG + chr1_1:72698621-72698640 Msa0042120:CDS 30.0%
!! TAGTCTTATGGAAAACAAGT+TGG + chr1_1:72698633-72698652 Msa0042120:CDS 30.0%
TGAAGAAAAATGCAATGAAG+TGG + chr1_1:72698719-72698738 Msa0042120:CDS 30.0%
TCGGAATCTTGATGTATTTA+TGG + chr1_1:72698786-72698805 Msa0042120:CDS 30.0%
GATCATTGTTTACTAGATGA+TGG + chr1_1:72697671-72697690 Msa0042120:CDS 30.0%
! TATACAATCCTTTTCTTCCA+TGG + chr1_1:72697792-72697811 Msa0042120:CDS 30.0%
! ATACAATCCTTTTCTTCCAT+GGG + chr1_1:72697793-72697812 Msa0042120:CDS 30.0%
!! ATATAAGGTTCTGTTTCTGA+AGG - chr1_1:72697926-72697945 None:intergenic 30.0%
GGCAAATGAACATCAATATA+AGG - chr1_1:72697941-72697960 None:intergenic 30.0%
!!! TCTAATGAGGACTGATTTTT+TGG - chr1_1:72698131-72698150 None:intergenic 30.0%
! ATGTAAACTACAGAACCTTT+TGG - chr1_1:72698265-72698284 None:intergenic 30.0%
! TCTGTAGTTTACATCTCTTT+TGG + chr1_1:72698271-72698290 Msa0042120:CDS 30.0%
! CTGTAGTTTACATCTCTTTT+GGG + chr1_1:72698272-72698291 Msa0042120:CDS 30.0%
AAGTGAACGAAATTGCATTT+GGG + chr1_1:72698320-72698339 Msa0042120:CDS 30.0%
!!! TTGATAGATGTTTTTGGTGT+AGG + chr1_1:72698595-72698614 Msa0042120:CDS 30.0%
!!! TGATAGATGTTTTTGGTGTA+GGG + chr1_1:72698596-72698615 Msa0042120:CDS 30.0%
! TAGATTGGGTTATAGTCTTA+TGG + chr1_1:72698621-72698640 Msa0042120:CDS 30.0%
!! TAGTCTTATGGAAAACAAGT+TGG + chr1_1:72698633-72698652 Msa0042120:CDS 30.0%
TGAAGAAAAATGCAATGAAG+TGG + chr1_1:72698719-72698738 Msa0042120:CDS 30.0%
TCGGAATCTTGATGTATTTA+TGG + chr1_1:72698786-72698805 Msa0042120:CDS 30.0%
! TATCGGAGTTGCTAATTTGT+TGG - chr1_1:72697621-72697640 None:intergenic 35.0%
AACAAATTAGCAACTCCGAT+AGG + chr1_1:72697620-72697639 Msa0042120:CDS 35.0%
! AGCGTGATTCTTGATCATTT+TGG - chr1_1:72697744-72697763 None:intergenic 35.0%
GTGGACATAGTTATAGTAAG+TGG - chr1_1:72697888-72697907 None:intergenic 35.0%
! AAGGAAAAGGTACAAGTTTG+TGG - chr1_1:72697907-72697926 None:intergenic 35.0%
CTGGGATTTCATTGTATTGA+AGG - chr1_1:72697973-72697992 None:intergenic 35.0%
AGTGACCCTATAATTGGATA+GGG - chr1_1:72698016-72698035 None:intergenic 35.0%
CAAGTTATTCATATGTGACG+TGG - chr1_1:72698041-72698060 None:intergenic 35.0%
!! ATCATGCTCTAGTTCTTCAT+AGG - chr1_1:72698092-72698111 None:intergenic 35.0%
!!! TGCTTGCTGCTTTTATTGTT+GGG - chr1_1:72698177-72698196 None:intergenic 35.0%
!!! TTGCTTGCTGCTTTTATTGT+TGG - chr1_1:72698178-72698197 None:intergenic 35.0%
CAAGTGAACGAAATTGCATT+TGG + chr1_1:72698319-72698338 Msa0042120:CDS 35.0%
!! TTTTGGTGTAGGGATTAGAT+TGG + chr1_1:72698606-72698625 Msa0042120:CDS 35.0%
! TTTGGTGTAGGGATTAGATT+GGG + chr1_1:72698607-72698626 Msa0042120:CDS 35.0%
AAATGCAATGAAGTGGAAGA+AGG + chr1_1:72698726-72698745 Msa0042120:CDS 35.0%
TGCTGTTGTAAACATTCACA+AGG + chr1_1:72698825-72698844 Msa0042120:CDS 35.0%
! TATCGGAGTTGCTAATTTGT+TGG - chr1_1:72697621-72697640 None:intergenic 35.0%
AACAAATTAGCAACTCCGAT+AGG + chr1_1:72697620-72697639 Msa0042120:CDS 35.0%
! AGCGTGATTCTTGATCATTT+TGG - chr1_1:72697744-72697763 None:intergenic 35.0%
GTGGACATAGTTATAGTAAG+TGG - chr1_1:72697888-72697907 None:intergenic 35.0%
! AAGGAAAAGGTACAAGTTTG+TGG - chr1_1:72697907-72697926 None:intergenic 35.0%
CTGGGATTTCATTGTATTGA+AGG - chr1_1:72697973-72697992 None:intergenic 35.0%
AGTGACCCTATAATTGGATA+GGG - chr1_1:72698016-72698035 None:intergenic 35.0%
CAAGTTATTCATATGTGACG+TGG - chr1_1:72698041-72698060 None:intergenic 35.0%
!! ATCATGCTCTAGTTCTTCAT+AGG - chr1_1:72698092-72698111 None:intergenic 35.0%
!!! TGCTTGCTGCTTTTATTGTT+GGG - chr1_1:72698177-72698196 None:intergenic 35.0%
!!! TTGCTTGCTGCTTTTATTGT+TGG - chr1_1:72698178-72698197 None:intergenic 35.0%
CAAGTGAACGAAATTGCATT+TGG + chr1_1:72698319-72698338 Msa0042120:CDS 35.0%
!! TTTTGGTGTAGGGATTAGAT+TGG + chr1_1:72698606-72698625 Msa0042120:CDS 35.0%
! TTTGGTGTAGGGATTAGATT+GGG + chr1_1:72698607-72698626 Msa0042120:CDS 35.0%
AAATGCAATGAAGTGGAAGA+AGG + chr1_1:72698726-72698745 Msa0042120:CDS 35.0%
TGCTGTTGTAAACATTCACA+AGG + chr1_1:72698825-72698844 Msa0042120:CDS 35.0%
GATCAAAGAACTCGAAAGTG+AGG - chr1_1:72697655-72697674 None:intergenic 40.0%
TCACAAACCCATGGAAGAAA+AGG - chr1_1:72697803-72697822 None:intergenic 40.0%
AAAGCTACATCACAAACCCA+TGG - chr1_1:72697812-72697831 None:intergenic 40.0%
!! GGTTCTGTTTCTGAAGGAAA+AGG - chr1_1:72697920-72697939 None:intergenic 40.0%
GAGTGACCCTATAATTGGAT+AGG - chr1_1:72698017-72698036 None:intergenic 40.0%
TTCTTGAACAGAGGACCAAT+GGG - chr1_1:72698154-72698173 None:intergenic 40.0%
ATTGTTGGGTTCTTGAACAG+AGG - chr1_1:72698163-72698182 None:intergenic 40.0%
AAAGCAGCAAGCAATATTCG+AGG + chr1_1:72698184-72698203 Msa0042120:CDS 40.0%
TGGCTAAACACAAAGCCAAA+AGG + chr1_1:72698247-72698266 Msa0042120:CDS 40.0%
GCAATTTCGTTCACTTGTTC+TGG - chr1_1:72698316-72698335 None:intergenic 40.0%
TTTGTGGGCAAAAAAACACC+AGG + chr1_1:72698366-72698385 Msa0042120:CDS 40.0%
AACAAGTGAGAGAGGAAAAG+TGG + chr1_1:72698417-72698436 Msa0042120:CDS 40.0%
!! GGAAGTACTTGATCATCCTT+CGG + chr1_1:72698459-72698478 Msa0042120:CDS 40.0%
!! CAAGTTGGTAACAAGAGATG+AGG + chr1_1:72698648-72698667 Msa0042120:CDS 40.0%
!! TGAGGTGAAGAAGTGCTTAA+TGG + chr1_1:72698666-72698685 Msa0042120:CDS 40.0%
TGCTTAATGGAAGCAACAAC+AGG + chr1_1:72698679-72698698 Msa0042120:CDS 40.0%
GCTTAATGGAAGCAACAACA+GGG + chr1_1:72698680-72698699 Msa0042120:CDS 40.0%
CTTAATGGAAGCAACAACAG+GGG + chr1_1:72698681-72698700 Msa0042120:CDS 40.0%
TACATCAAGATTCCGATCAG+AGG - chr1_1:72698782-72698801 None:intergenic 40.0%
GATCAAAGAACTCGAAAGTG+AGG - chr1_1:72697655-72697674 None:intergenic 40.0%
TCACAAACCCATGGAAGAAA+AGG - chr1_1:72697803-72697822 None:intergenic 40.0%
AAAGCTACATCACAAACCCA+TGG - chr1_1:72697812-72697831 None:intergenic 40.0%
!! GGTTCTGTTTCTGAAGGAAA+AGG - chr1_1:72697920-72697939 None:intergenic 40.0%
GAGTGACCCTATAATTGGAT+AGG - chr1_1:72698017-72698036 None:intergenic 40.0%
TTCTTGAACAGAGGACCAAT+GGG - chr1_1:72698154-72698173 None:intergenic 40.0%
ATTGTTGGGTTCTTGAACAG+AGG - chr1_1:72698163-72698182 None:intergenic 40.0%
AAAGCAGCAAGCAATATTCG+AGG + chr1_1:72698184-72698203 Msa0042120:CDS 40.0%
TGGCTAAACACAAAGCCAAA+AGG + chr1_1:72698247-72698266 Msa0042120:CDS 40.0%
GCAATTTCGTTCACTTGTTC+TGG - chr1_1:72698316-72698335 None:intergenic 40.0%
TTTGTGGGCAAAAAAACACC+AGG + chr1_1:72698366-72698385 Msa0042120:CDS 40.0%
AACAAGTGAGAGAGGAAAAG+TGG + chr1_1:72698417-72698436 Msa0042120:CDS 40.0%
!! GGAAGTACTTGATCATCCTT+CGG + chr1_1:72698459-72698478 Msa0042120:CDS 40.0%
!! CAAGTTGGTAACAAGAGATG+AGG + chr1_1:72698648-72698667 Msa0042120:CDS 40.0%
!! TGAGGTGAAGAAGTGCTTAA+TGG + chr1_1:72698666-72698685 Msa0042120:CDS 40.0%
TGCTTAATGGAAGCAACAAC+AGG + chr1_1:72698679-72698698 Msa0042120:CDS 40.0%
GCTTAATGGAAGCAACAACA+GGG + chr1_1:72698680-72698699 Msa0042120:CDS 40.0%
CTTAATGGAAGCAACAACAG+GGG + chr1_1:72698681-72698700 Msa0042120:CDS 40.0%
TACATCAAGATTCCGATCAG+AGG - chr1_1:72698782-72698801 None:intergenic 40.0%
TTAGCAACTCCGATAGGTGA+TGG + chr1_1:72697626-72697645 Msa0042120:CDS 45.0%
ATGCAGAGCTTGAGCTTGTA+GGG + chr1_1:72697705-72697724 Msa0042120:CDS 45.0%
GTGGTGAGTGACCCTATAAT+TGG - chr1_1:72698022-72698041 None:intergenic 45.0%
TCAGTCCTCATTAGACCCAT+TGG + chr1_1:72698136-72698155 Msa0042120:CDS 45.0%
GTTCTTGAACAGAGGACCAA+TGG - chr1_1:72698155-72698174 None:intergenic 45.0%
! CGTTCACTTGTTCTGGATGA+TGG - chr1_1:72698309-72698328 None:intergenic 45.0%
ACCAGGATCATTTGCCTGAT+GGG + chr1_1:72698383-72698402 Msa0042120:CDS 45.0%
!! TCATTTGCCTGATGGGTTCT+TGG + chr1_1:72698390-72698409 Msa0042120:CDS 45.0%
TTGGAGGAAACAAGTGAGAG+AGG + chr1_1:72698409-72698428 Msa0042120:CDS 45.0%
AGAGAGGAAAAGTGGTGAAG+TGG + chr1_1:72698425-72698444 Msa0042120:CDS 45.0%
TGATCAAGTACTTCCTCCTG+TGG - chr1_1:72698454-72698473 None:intergenic 45.0%
AGTACTTGATCATCCTTCGG+TGG + chr1_1:72698462-72698481 Msa0042120:CDS 45.0%
GCATGTTTCGTGACACATTG+TGG + chr1_1:72698484-72698503 Msa0042120:CDS 45.0%
TTGTGGCTGGAATTCAACGA+TGG + chr1_1:72698501-72698520 Msa0042120:CDS 45.0%
AATGCTGGAAATGCCAACAC+CGG - chr1_1:72698547-72698566 None:intergenic 45.0%
! GTGTTGGCATTTCCAGCATT+TGG + chr1_1:72698547-72698566 Msa0042120:CDS 45.0%
AACAACAGGGGAAAAAGCAG+AGG + chr1_1:72698693-72698712 Msa0042120:CDS 45.0%
TGCAATGAAGTGGAAGAAGG+CGG + chr1_1:72698729-72698748 Msa0042120:CDS 45.0%
TTAGCAACTCCGATAGGTGA+TGG + chr1_1:72697626-72697645 Msa0042120:CDS 45.0%
ATGCAGAGCTTGAGCTTGTA+GGG + chr1_1:72697705-72697724 Msa0042120:CDS 45.0%
GTGGTGAGTGACCCTATAAT+TGG - chr1_1:72698022-72698041 None:intergenic 45.0%
TCAGTCCTCATTAGACCCAT+TGG + chr1_1:72698136-72698155 Msa0042120:CDS 45.0%
GTTCTTGAACAGAGGACCAA+TGG - chr1_1:72698155-72698174 None:intergenic 45.0%
! CGTTCACTTGTTCTGGATGA+TGG - chr1_1:72698309-72698328 None:intergenic 45.0%
ACCAGGATCATTTGCCTGAT+GGG + chr1_1:72698383-72698402 Msa0042120:CDS 45.0%
!! TCATTTGCCTGATGGGTTCT+TGG + chr1_1:72698390-72698409 Msa0042120:CDS 45.0%
TTGGAGGAAACAAGTGAGAG+AGG + chr1_1:72698409-72698428 Msa0042120:CDS 45.0%
AGAGAGGAAAAGTGGTGAAG+TGG + chr1_1:72698425-72698444 Msa0042120:CDS 45.0%
TGATCAAGTACTTCCTCCTG+TGG - chr1_1:72698454-72698473 None:intergenic 45.0%
AGTACTTGATCATCCTTCGG+TGG + chr1_1:72698462-72698481 Msa0042120:CDS 45.0%
GCATGTTTCGTGACACATTG+TGG + chr1_1:72698484-72698503 Msa0042120:CDS 45.0%
TTGTGGCTGGAATTCAACGA+TGG + chr1_1:72698501-72698520 Msa0042120:CDS 45.0%
AATGCTGGAAATGCCAACAC+CGG - chr1_1:72698547-72698566 None:intergenic 45.0%
! GTGTTGGCATTTCCAGCATT+TGG + chr1_1:72698547-72698566 Msa0042120:CDS 45.0%
AACAACAGGGGAAAAAGCAG+AGG + chr1_1:72698693-72698712 Msa0042120:CDS 45.0%
TGCAATGAAGTGGAAGAAGG+CGG + chr1_1:72698729-72698748 Msa0042120:CDS 45.0%
GTGAGGCAACCATCACCTAT+CGG - chr1_1:72697638-72697657 None:intergenic 50.0%
CTCAAGCTCTGCATGGTCAA+TGG - chr1_1:72697699-72697718 None:intergenic 50.0%
CTACAAGCTCAAGCTCTGCA+TGG - chr1_1:72697706-72697725 None:intergenic 50.0%
CATGCAGAGCTTGAGCTTGT+AGG + chr1_1:72697704-72697723 Msa0042120:CDS 50.0%
GAGGACCAATGGGTCTAATG+AGG - chr1_1:72698144-72698163 None:intergenic 50.0%
CACCAGGATCATTTGCCTGA+TGG + chr1_1:72698382-72698401 Msa0042120:CDS 50.0%
ACCCATCAGGCAAATGATCC+TGG - chr1_1:72698387-72698406 None:intergenic 50.0%
!! TTTGCCTGATGGGTTCTTGG+AGG + chr1_1:72698393-72698412 Msa0042120:CDS 50.0%
GTTTCCTCCAAGAACCCATC+AGG - chr1_1:72698400-72698419 None:intergenic 50.0%
GTTTCGTGACACATTGTGGC+TGG + chr1_1:72698488-72698507 Msa0042120:CDS 50.0%
ACGATGGAAGCAACTGCTTC+AGG + chr1_1:72698517-72698536 Msa0042120:CDS 50.0%
AGCAACTGCTTCAGGAGTTC+CGG + chr1_1:72698525-72698544 Msa0042120:CDS 50.0%
GTAAGGTGGTCACCAAATGC+TGG - chr1_1:72698562-72698581 None:intergenic 50.0%
AATGAAGTGGAAGAAGGCGG+CGG + chr1_1:72698732-72698751 Msa0042120:CDS 50.0%
GTGAGGCAACCATCACCTAT+CGG - chr1_1:72697638-72697657 None:intergenic 50.0%
CTCAAGCTCTGCATGGTCAA+TGG - chr1_1:72697699-72697718 None:intergenic 50.0%
CTACAAGCTCAAGCTCTGCA+TGG - chr1_1:72697706-72697725 None:intergenic 50.0%
CATGCAGAGCTTGAGCTTGT+AGG + chr1_1:72697704-72697723 Msa0042120:CDS 50.0%
GAGGACCAATGGGTCTAATG+AGG - chr1_1:72698144-72698163 None:intergenic 50.0%
CACCAGGATCATTTGCCTGA+TGG + chr1_1:72698382-72698401 Msa0042120:CDS 50.0%
ACCCATCAGGCAAATGATCC+TGG - chr1_1:72698387-72698406 None:intergenic 50.0%
!! TTTGCCTGATGGGTTCTTGG+AGG + chr1_1:72698393-72698412 Msa0042120:CDS 50.0%
GTTTCCTCCAAGAACCCATC+AGG - chr1_1:72698400-72698419 None:intergenic 50.0%
GTTTCGTGACACATTGTGGC+TGG + chr1_1:72698488-72698507 Msa0042120:CDS 50.0%
ACGATGGAAGCAACTGCTTC+AGG + chr1_1:72698517-72698536 Msa0042120:CDS 50.0%
AGCAACTGCTTCAGGAGTTC+CGG + chr1_1:72698525-72698544 Msa0042120:CDS 50.0%
GTAAGGTGGTCACCAAATGC+TGG - chr1_1:72698562-72698581 None:intergenic 50.0%
AATGAAGTGGAAGAAGGCGG+CGG + chr1_1:72698732-72698751 Msa0042120:CDS 50.0%
CAGAGCTTGAGCTTGTAGGG+AGG + chr1_1:72697708-72697727 Msa0042120:CDS 55.0%
AGTGGTGAAGTGGAGTCCAC+AGG + chr1_1:72698435-72698454 Msa0042120:CDS 55.0%
GTCACGAAACATGCCACCGA+AGG - chr1_1:72698478-72698497 None:intergenic 55.0%
TGCTTCAGGAGTTCCGGTGT+TGG + chr1_1:72698531-72698550 Msa0042120:CDS 55.0%
CTGTCGGTGGATCCTCTGAT+CGG + chr1_1:72698767-72698786 Msa0042120:CDS 55.0%
CAGAGCTTGAGCTTGTAGGG+AGG + chr1_1:72697708-72697727 Msa0042120:CDS 55.0%
AGTGGTGAAGTGGAGTCCAC+AGG + chr1_1:72698435-72698454 Msa0042120:CDS 55.0%
GTCACGAAACATGCCACCGA+AGG - chr1_1:72698478-72698497 None:intergenic 55.0%
TGCTTCAGGAGTTCCGGTGT+TGG + chr1_1:72698531-72698550 Msa0042120:CDS 55.0%
CTGTCGGTGGATCCTCTGAT+CGG + chr1_1:72698767-72698786 Msa0042120:CDS 55.0%
GGTGAAGTGGAGTCCACAGG+AGG + chr1_1:72698438-72698457 Msa0042120:CDS 60.0%
GGTGAAGTGGAGTCCACAGG+AGG + chr1_1:72698438-72698457 Msa0042120:CDS 60.0%
GAAGTGGAAGAAGGCGGCGG+AGG + chr1_1:72698735-72698754 Msa0042120:CDS 65.0%
GCGGAGGAAGCAGTGGCTGT+CGG + chr1_1:72698751-72698770 Msa0042120:CDS 65.0%
GAGGAAGCAGTGGCTGTCGG+TGG + chr1_1:72698754-72698773 Msa0042120:CDS 65.0%
GAAGTGGAAGAAGGCGGCGG+AGG + chr1_1:72698735-72698754 Msa0042120:CDS 65.0%
GCGGAGGAAGCAGTGGCTGT+CGG + chr1_1:72698751-72698770 Msa0042120:CDS 65.0%
GAGGAAGCAGTGGCTGTCGG+TGG + chr1_1:72698754-72698773 Msa0042120:CDS 65.0%
GAAGGCGGCGGAGGAAGCAG+TGG + chr1_1:72698744-72698763 Msa0042120:CDS 70.0%
GAAGGCGGCGGAGGAAGCAG+TGG + chr1_1:72698744-72698763 Msa0042120:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 72697608 72698852 72697608 ID=Msa0042120;Name=Msa0042120
chr1_1 mRNA 72697608 72698852 72697608 ID=Msa0042120-mRNA-1;Parent=Msa0042120;Name=Msa0042120-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|414
chr1_1 exon 72697608 72698852 72697608 ID=Msa0042120-mRNA-1:exon:24251;Parent=Msa0042120-mRNA-1
chr1_1 CDS 72697608 72698852 72697608 ID=Msa0042120-mRNA-1:cds;Parent=Msa0042120-mRNA-1
Gene Sequence

>Msa0042120

ATGCGAATCACCAACAAATTAGCAACTCCGATAGGTGATGGTTGCCTCACTTTCGAGTTCTTTGATCATTGTTTACTAGATGATGGTTCCATTGACCATGCAGAGCTTGAGCTTGTAGGGAGGCAGTTTTTTTCCAAAATGATCAAGAATCACGCTGATTCAAGTAAACCAATTTCATGTATCATATACAATCCTTTTCTTCCATGGGTTTGTGATGTAGCTTTTGAACATGATATTCTTTCTGCTTTATCATGGAATAATTCTAGTGCTGTTTTCGCCACTTACTATAACTATGTCCACAAACTTGTACCTTTTCCTTCAGAAACAGAACCTTATATTGATGTTCATTTGCCTTTTATAGTCCTTCAATACAATGAAATCCCAGATTTAATACATCCTTTTAATCCCTATCCAATTATAGGGTCACTCACCACGTCACATATGAATAACTTGTCTAAAATGTTTTGTGTATTAGTGGACACCTATGAAGAACTAGAGCATGATTTCATCGATTATCTTTCCAAAAAATCAGTCCTCATTAGACCCATTGGTCCTCTGTTCAAGAACCCAACAATAAAAGCAGCAAGCAATATTCGAGGTGATTTTGTTAAGAGCGATGATGATTGTAGTATTATAGAGTGGCTAAACACAAAGCCAAAAGGTTCTGTAGTTTACATCTCTTTTGGGACTGTTGTAGACCATCATCCAGAACAAGTGAACGAAATTGCATTTGGGTTATTGAATTCTAAACTCAGATTTTTGTGGGCAAAAAAACACCAGGATCATTTGCCTGATGGGTTCTTGGAGGAAACAAGTGAGAGAGGAAAAGTGGTGAAGTGGAGTCCACAGGAGGAAGTACTTGATCATCCTTCGGTGGCATGTTTCGTGACACATTGTGGCTGGAATTCAACGATGGAAGCAACTGCTTCAGGAGTTCCGGTGTTGGCATTTCCAGCATTTGGTGACCACCTTACAAATGCAAAATTTTTGATAGATGTTTTTGGTGTAGGGATTAGATTGGGTTATAGTCTTATGGAAAACAAGTTGGTAACAAGAGATGAGGTGAAGAAGTGCTTAATGGAAGCAACAACAGGGGAAAAAGCAGAGGAGTTGAAGAAAAATGCAATGAAGTGGAAGAAGGCGGCGGAGGAAGCAGTGGCTGTCGGTGGATCCTCTGATCGGAATCTTGATGTATTTATGGAAGACATTAAGAAACGTGCTGTTGTAAACATTCACAAGGTGTAA
Protein sequence

>Msa0042120

MRITNKLATPIGDGCLTFEFFDHCLLDDGSIDHAELELVGRQFFSKMIKNHADSSKPISCIIYNPFLPWVCDVAFEHDILSALSWNNSSAVFATYYNYVHKLVPFPSETEPYIDVHLPFIVLQYNEIPDLIHPFNPYPIIGSLTTSHMNNLSKMFCVLVDTYEELEHDFIDYLSKKSVLIRPIGPLFKNPTIKAASNIRGDFVKSDDDCSIIEWLNTKPKGSVVYISFGTVVDHHPEQVNEIAFGLLNSKLRFLWAKKHQDHLPDGFLEETSERGKVVKWSPQEEVLDHPSVACFVTHCGWNSTMEATASGVPVLAFPAFGDHLTNAKFLIDVFGVGIRLGYSLMENKLVTRDEVKKCLMEATTGEKAEELKKNAMKWKKAAEEAVAVGGSSDRNLDVFMEDIKKRAVVNIHKV*