AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0938430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0938430 MtrunA17_Chr6g0454341 90.871 482 43 1 1 481 1 482 0.0 923
Msa0938430 MtrunA17_Chr3g0078841 87.759 482 58 1 1 481 1 482 0.0 883
Msa0938430 MtrunA17_Chr8g0336331 84.440 482 73 2 1 481 1 481 0.0 860
Msa0938430 MtrunA17_Chr6g0454321 85.169 472 69 1 1 471 1 472 0.0 850
Msa0938430 MtrunA17_Chr6g0454321 67.213 122 36 2 5 122 499 620 9.95e-48 174
Msa0938430 MtrunA17_Chr6g0454301 81.458 480 88 1 1 479 254 733 0.0 831
Msa0938430 MtrunA17_Chr6g0454301 75.546 229 55 1 247 475 1 228 4.15e-120 368
Msa0938430 MtrunA17_Chr6g0454401 74.845 485 116 3 1 480 1 484 0.0 755
Msa0938430 MtrunA17_Chr6g0454191 74.074 486 120 4 1 481 1 485 0.0 754
Msa0938430 MtrunA17_Chr6g0454181 72.577 485 128 3 1 481 1 484 0.0 747
Msa0938430 MtrunA17_Chr6g0454201 75.720 486 112 4 1 481 1 485 0.0 738
Msa0938430 MtrunA17_Chr6g0453951 72.577 485 127 4 1 480 47 530 0.0 736
Msa0938430 MtrunA17_Chr6g0454361 73.814 485 121 4 1 480 1 484 0.0 729
Msa0938430 MtrunA17_Chr8g0359821 72.727 484 127 3 1 481 1 482 0.0 728
Msa0938430 MtrunA17_Chr6g0454331 72.050 483 128 3 5 481 2 483 0.0 724
Msa0938430 MtrunA17_Chr6g0453961 70.722 485 136 4 1 480 10 493 0.0 714
Msa0938430 MtrunA17_Chr6g0454291 73.333 480 123 3 4 479 1 479 0.0 712
Msa0938430 MtrunA17_Chr6g0454141 69.072 485 145 3 1 481 1 484 0.0 704
Msa0938430 MtrunA17_Chr6g0454211 71.518 481 132 3 5 481 292 771 0.0 703
Msa0938430 MtrunA17_Chr6g0454211 54.000 350 78 4 127 476 1 267 3.34e-109 341
Msa0938430 MtrunA17_Chr6g0454351 69.136 486 126 5 1 480 1 468 0.0 697
Msa0938430 MtrunA17_Chr6g0452771 70.868 484 136 3 1 480 1 483 0.0 691
Msa0938430 MtrunA17_Chr6g0454261 68.660 485 147 3 1 481 1 484 0.0 691
Msa0938430 MtrunA17_Chr6g0454121 68.802 484 147 2 1 481 1 483 0.0 673
Msa0938430 MtrunA17_Chr6g0454151 70.600 483 135 4 1 479 1 480 0.0 670
Msa0938430 MtrunA17_Chr6g0454131 66.874 483 156 2 1 480 1 482 0.0 657
Msa0938430 MtrunA17_Chr7g0217881 67.769 484 133 4 1 480 1 465 0.0 654
Msa0938430 MtrunA17_Chr5g0423981 66.392 485 121 5 1 480 1 448 0.0 649
Msa0938430 MtrunA17_Chr5g0426431 59.958 472 184 5 10 479 12 480 0.0 592
Msa0938430 MtrunA17_Chr6g0454251 69.367 395 116 3 5 395 2 395 0.0 574
Msa0938430 MtrunA17_Chr3g0092641 56.568 472 200 5 9 478 11 479 0.0 565
Msa0938430 MtrunA17_Chr2g0278711 53.459 477 215 3 5 478 6 478 0.0 540
Msa0938430 MtrunA17_Chr3g0118771 51.158 475 227 5 6 477 17 489 0.0 516
Msa0938430 MtrunA17_Chr3g0118711 50.314 477 234 3 3 477 6 481 0.0 516
Msa0938430 MtrunA17_Chr3g0118671 49.789 474 235 3 6 477 2 474 0.0 514
Msa0938430 MtrunA17_Chr3g0118691 49.367 474 237 3 6 477 11 483 1.12e-176 504
Msa0938430 MtrunA17_Chr3g0118701 48.734 474 240 3 6 477 11 483 4.59e-176 503
Msa0938430 MtrunA17_Chr4g0050341 51.695 472 221 4 8 473 17 487 2.85e-174 499
Msa0938430 MtrunA17_Chr3g0118751 48.523 474 212 7 6 477 2 445 5.63e-165 473
Msa0938430 MtrunA17_Chr3g0118661 48.093 472 243 2 6 476 9 479 1.23e-160 464
Msa0938430 MtrunA17_Chr8g0355011 61.892 370 98 2 112 481 40 366 2.70e-159 456
Msa0938430 MtrunA17_Chr6g0454271 71.918 292 81 1 190 481 1 291 5.75e-159 452
Msa0938430 MtrunA17_Chr8g0336271 77.736 265 57 2 1 264 1 264 5.83e-149 426
Msa0938430 MtrunA17_Chr6g0454221 86.026 229 32 0 247 475 1 229 9.70e-149 426
Msa0938430 MtrunA17_Chr6g0454171 60.056 358 94 4 127 480 1 313 1.96e-145 418
Msa0938430 MtrunA17_Chr6g0454231 78.481 237 50 1 1 236 241 477 3.39e-130 385
Msa0938430 MtrunA17_Chr6g0454231 62.646 257 56 4 222 477 2 219 7.53e-101 310
Msa0938430 MtrunA17_Chr5g0426401 58.842 311 123 4 171 478 4 312 1.45e-128 375
Msa0938430 MtrunA17_Chr6g0453981 71.121 232 66 1 127 358 1 231 2.64e-117 343
Msa0938430 MtrunA17_Chr3g0118721 52.759 290 135 2 190 477 1 290 6.31e-107 320
Msa0938430 MtrunA17_Chr6g0454371 80.460 174 34 0 307 480 1 174 7.78e-102 302
Msa0938430 MtrunA17_Chr6g0453941 66.063 221 73 2 130 349 56 275 1.62e-94 287
Msa0938430 MtrunA17_Chr6g0453941 35.870 184 75 7 6 161 7 175 8.88e-21 92.0
Msa0938430 MtrunA17_Chr6g0454281 66.667 195 61 2 1 191 1 195 3.80e-91 276
Msa0938430 MtrunA17_Chr3g0112771 35.518 473 264 14 12 477 14 452 4.58e-89 280
Msa0938430 MtrunA17_Chr8g0336261 86.029 136 19 0 307 442 1 136 1.82e-84 256
Msa0938430 MtrunA17_Chr5g0412111 33.403 476 291 13 9 476 4 461 4.01e-84 267
Msa0938430 MtrunA17_Chr5g0412131 34.100 478 286 12 9 476 11 469 2.40e-83 265
Msa0938430 MtrunA17_Chr5g0412101 33.264 478 291 11 9 476 11 470 3.59e-79 254
Msa0938430 MtrunA17_Chr1g0207981 31.557 488 289 12 10 478 13 474 6.65e-79 254
Msa0938430 MtrunA17_Chr3g0112761 33.755 474 273 13 12 477 10 450 1.10e-78 253
Msa0938430 MtrunA17_Chr4g0032331 32.906 468 269 12 12 468 10 443 8.79e-78 250
Msa0938430 MtrunA17_Chr7g0218811 33.262 469 273 11 9 473 14 446 3.11e-76 246
Msa0938430 MtrunA17_Chr6g0464881 32.025 484 288 15 6 480 7 458 4.61e-75 243
Msa0938430 MtrunA17_Chr7g0218831 31.857 474 272 12 9 473 5 436 1.62e-74 241
Msa0938430 MtrunA17_Chr7g0218821 32.135 473 276 12 9 469 4 443 2.79e-73 238
Msa0938430 MtrunA17_Chr7g0218791 31.134 485 278 14 1 473 1 441 3.16e-72 235
Msa0938430 MtrunA17_Chr7g0218841 32.623 469 276 10 9 473 5 437 3.44e-72 235
Msa0938430 MtrunA17_Chr5g0414331 31.447 477 283 12 6 473 9 450 1.28e-71 234
Msa0938430 MtrunA17_Chr4g0053501 30.722 485 293 15 12 481 13 469 5.21e-70 231
Msa0938430 MtrunA17_Chr7g0249981 31.915 470 279 15 8 469 23 459 1.57e-69 229
Msa0938430 MtrunA17_Chr7g0250001 30.335 478 292 12 8 477 4 448 3.05e-69 228
Msa0938430 MtrunA17_Chr3g0098111 29.774 487 296 11 10 476 9 469 4.68e-69 228
Msa0938430 MtrunA17_Chr4g0053321 30.894 492 299 15 5 481 19 484 8.76e-69 228
Msa0938430 MtrunA17_Chr8g0365811 31.707 492 278 16 12 476 497 957 7.56e-68 234
Msa0938430 MtrunA17_Chr8g0365811 30.886 463 272 14 12 450 11 449 4.61e-61 215
Msa0938430 MtrunA17_Chr6g0464921 31.942 479 286 15 9 478 10 457 1.05e-67 224
Msa0938430 MtrunA17_Chr6g0464871 30.444 473 296 13 6 473 19 463 2.83e-67 223
Msa0938430 MtrunA17_Chr5g0414321 30.353 481 291 13 6 477 7 452 5.81e-67 222
Msa0938430 MtrunA17_Chr8g0377921 31.301 492 286 17 9 477 2 464 6.19e-66 219
Msa0938430 MtrunA17_Chr1g0207971 30.103 485 282 16 10 476 8 453 2.36e-65 218
Msa0938430 MtrunA17_Chr6g0454111 61.728 162 60 2 167 327 23 183 2.49e-64 206
Msa0938430 MtrunA17_Chr8g0380531 31.013 474 294 14 10 476 10 457 2.70e-64 215
Msa0938430 MtrunA17_Chr1g0207861 31.429 490 300 13 1 476 1 468 3.72e-64 215
Msa0938430 MtrunA17_Chr1g0161351 30.435 483 298 12 10 476 37 497 4.07e-64 216
Msa0938430 MtrunA17_Chr5g0426411 56.069 173 72 3 1 170 1 172 4.15e-64 205
Msa0938430 MtrunA17_Chr6g0464841 29.958 474 297 15 6 473 7 451 1.60e-63 213
Msa0938430 MtrunA17_Chr5g0401721 31.400 500 296 19 4 481 1 475 1.03e-62 211
Msa0938430 MtrunA17_Chr1g0207951 30.879 489 291 14 5 476 650 1108 1.61e-62 220
Msa0938430 MtrunA17_Chr1g0207951 30.769 494 279 16 5 476 118 570 4.94e-62 218
Msa0938430 MtrunA17_Chr6g0464861 30.544 478 288 16 6 473 7 450 1.85e-62 210
Msa0938430 MtrunA17_Chr3g0121991 31.911 492 285 18 10 476 79 545 2.57e-60 207
Msa0938430 MtrunA17_Chr1g0207831 28.542 480 302 10 12 476 10 463 3.16e-60 204
Msa0938430 MtrunA17_Chr7g0243631 28.257 499 301 12 10 476 13 486 1.56e-59 203
Msa0938430 MtrunA17_Chr7g0243931 28.144 501 309 10 5 476 12 490 2.37e-58 200
Msa0938430 MtrunA17_Chr8g0377941 31.301 492 274 16 12 477 9 462 3.21e-58 199
Msa0938430 MtrunA17_Chr3g0122001 32.106 489 289 16 10 476 6 473 3.67e-58 207
Msa0938430 MtrunA17_Chr3g0122001 31.753 485 295 14 10 476 486 952 8.49e-58 206
Msa0938430 MtrunA17_Chr7g0243951 28.088 502 307 14 5 476 6 483 6.61e-58 199
Msa0938430 MtrunA17_Chr7g0249931 29.202 476 292 16 5 469 35 476 1.40e-57 198
Msa0938430 MtrunA17_Chr7g0243771 27.823 496 303 14 10 476 6 475 5.56e-57 196
Msa0938430 MtrunA17_Chr5g0431361 29.607 483 283 14 10 476 12 453 3.25e-56 193
Msa0938430 MtrunA17_Chr3g0106231 31.315 479 274 14 10 477 18 452 6.14e-56 193
Msa0938430 MtrunA17_Chr7g0243801 27.163 497 313 14 6 476 3 476 1.21e-55 193
Msa0938430 MtrunA17_Chr6g0454381 61.268 142 55 0 127 268 1 142 5.04e-55 180
Msa0938430 MtrunA17_Chr7g0265041 29.273 509 299 16 9 481 10 493 5.92e-55 191
Msa0938430 MtrunA17_Chr5g0393591 28.632 475 275 11 10 476 17 435 1.07e-54 189
Msa0938430 MtrunA17_Chr7g0243681 27.273 495 306 13 10 476 11 479 3.24e-54 189
Msa0938430 MtrunA17_Chr5g0431441 29.461 482 293 16 10 477 18 466 4.42e-54 188
Msa0938430 MtrunA17_Chr8g0347271 29.025 472 273 14 9 455 18 452 3.55e-53 186
Msa0938430 MtrunA17_Chr5g0419761 27.324 527 295 17 4 481 3 490 7.57e-53 185
Msa0938430 MtrunA17_Chr5g0431401 27.859 481 291 13 10 476 10 448 9.11e-53 184
Msa0938430 MtrunA17_Chr6g0462571 30.946 349 216 8 132 472 126 457 2.21e-52 184
Msa0938430 MtrunA17_Chr8g0347281 28.541 473 274 14 9 455 17 451 4.56e-52 183
Msa0938430 MtrunA17_Chr7g0265101 29.412 510 295 17 8 479 7 489 5.63e-52 183
Msa0938430 MtrunA17_Chr5g0431421 28.008 482 291 13 10 477 10 449 7.47e-52 182
Msa0938430 MtrunA17_Chr7g0232401 27.515 487 294 12 10 469 6 460 1.22e-51 182
Msa0938430 MtrunA17_Chr4g0044511 26.477 491 319 12 6 476 36 504 1.24e-51 182
Msa0938430 MtrunA17_Chr7g0243861 27.888 502 309 15 5 476 9 487 1.63e-51 182
Msa0938430 MtrunA17_Chr1g0173121 28.221 489 285 16 12 476 16 462 2.04e-51 181
Msa0938430 MtrunA17_Chr6g0462531 30.382 497 292 19 8 481 2 467 2.44e-51 181
Msa0938430 MtrunA17_Chr1g0207931 36.434 258 151 4 228 476 244 497 3.03e-51 181
Msa0938430 MtrunA17_Chr5g0448551 27.489 462 283 13 7 452 4 429 3.32e-51 180
Msa0938430 MtrunA17_Chr4g0060511 27.593 511 302 15 5 476 6 487 5.97e-51 180
Msa0938430 MtrunA17_Chr7g0232391 28.571 497 286 14 10 475 6 464 6.03e-51 180
Msa0938430 MtrunA17_Chr5g0431371 28.274 481 289 14 10 476 10 448 1.03e-50 179
Msa0938430 MtrunA17_Chr7g0275681 30.392 510 281 20 6 477 8 481 1.05e-50 179
Msa0938430 MtrunA17_Chr7g0275511 29.268 492 272 17 9 465 14 464 1.11e-50 179
Msa0938430 MtrunA17_Chr6g0462541 30.532 357 206 9 132 472 129 459 2.81e-50 178
Msa0938430 MtrunA17_Chr1g0153451 29.518 498 282 15 10 479 6 462 9.74e-50 176
Msa0938430 MtrunA17_Chr6g0462521 31.818 352 204 9 132 474 124 448 1.97e-49 175
Msa0938430 MtrunA17_Chr8g0336741 29.263 475 270 14 10 455 13 450 2.23e-49 176
Msa0938430 MtrunA17_Chr8g0335141 28.713 505 283 20 3 472 2 464 3.98e-49 175
Msa0938430 MtrunA17_Chr6g0449931 29.495 495 278 19 8 469 4 460 7.33e-49 174
Msa0938430 MtrunA17_Chr7g0232411 27.565 497 291 14 10 475 6 464 1.08e-48 174
Msa0938430 MtrunA17_Chr8g0336691 27.723 505 299 14 3 479 6 472 4.60e-48 178
Msa0938430 MtrunA17_Chr8g0336691 30.997 371 211 9 117 465 1021 1368 1.37e-46 174
Msa0938430 MtrunA17_Chr8g0336691 28.898 481 282 16 10 479 480 911 1.49e-41 159
Msa0938430 MtrunA17_Chr7g0243871 27.811 507 291 19 6 476 5 472 3.48e-47 170
Msa0938430 MtrunA17_Chr5g0427561 84.270 89 14 0 393 481 1 89 3.71e-47 158
Msa0938430 MtrunA17_Chr4g0011051 28.324 519 294 14 8 481 7 492 3.72e-47 170
Msa0938430 MtrunA17_Chr7g0232341 27.708 480 278 15 7 455 3 444 4.68e-47 169
Msa0938430 MtrunA17_Chr8g0336731 29.787 376 223 9 117 473 134 487 1.04e-46 169
Msa0938430 MtrunA17_Chr7g0232331 27.743 483 274 15 7 455 3 444 1.75e-46 167
Msa0938430 MtrunA17_Chr5g0419771 27.022 507 302 15 10 477 36 513 2.03e-46 168
Msa0938430 MtrunA17_Chr6g0459311 27.824 478 279 15 7 455 10 450 2.95e-46 167
Msa0938430 MtrunA17_Chr7g0265151 28.400 500 302 18 10 477 9 484 3.01e-46 167
Msa0938430 MtrunA17_Chr8g0336651 29.084 502 284 17 10 479 781 1242 4.19e-46 172
Msa0938430 MtrunA17_Chr8g0336651 28.310 491 288 16 10 472 6 460 4.91e-46 172
Msa0938430 MtrunA17_Chr8g0336651 34.066 273 138 7 215 479 535 773 1.37e-37 147
Msa0938430 MtrunA17_Chr8g0334851 27.328 494 284 16 8 465 4 458 5.81e-46 166
Msa0938430 MtrunA17_Chr6g0462551 26.380 489 298 14 12 472 6 460 5.82e-46 166
Msa0938430 MtrunA17_Chr7g0243781 26.052 499 297 16 14 476 13 475 6.97e-46 166
Msa0938430 MtrunA17_Chr7g0265051 29.045 513 291 21 8 479 7 487 9.29e-46 166
Msa0938430 MtrunA17_Chr7g0232311 31.319 364 206 10 130 473 121 460 9.82e-46 166
Msa0938430 MtrunA17_Chr6g0486251 26.471 476 278 16 12 455 8 443 1.19e-45 165
Msa0938430 MtrunA17_Chr6g0486201 26.471 476 278 16 12 455 8 443 1.19e-45 165
Msa0938430 MtrunA17_Chr5g0440421 26.448 518 316 20 1 477 1 494 1.41e-45 166
Msa0938430 MtrunA17_Chr7g0265141 27.485 513 309 15 1 477 1 486 2.14e-45 165
Msa0938430 MtrunA17_Chr8g0335161 27.455 499 292 20 6 472 2 462 2.91e-45 164
Msa0938430 MtrunA17_Chr1g0159551 26.804 485 288 18 15 476 19 459 3.24e-45 164
Msa0938430 MtrunA17_Chr1g0179901 26.214 515 297 18 10 477 16 494 4.25e-45 164
Msa0938430 MtrunA17_Chr8g0373301 30.000 400 231 11 75 452 70 442 4.62e-45 164
Msa0938430 MtrunA17_Chr7g0243851 26.747 501 274 15 5 476 6 442 1.38e-44 162
Msa0938430 MtrunA17_Chr8g0366391 26.477 491 315 13 10 476 9 477 1.79e-44 162
Msa0938430 MtrunA17_Chr5g0432731 31.392 309 183 8 181 477 6 297 2.48e-44 157
Msa0938430 MtrunA17_Chr4g0014061 26.008 496 294 14 13 473 12 469 3.02e-44 162
Msa0938430 MtrunA17_Chr5g0442581 26.796 515 302 15 7 481 2 481 3.30e-44 163
Msa0938430 MtrunA17_Chr7g0235051 26.096 502 275 13 10 475 11 452 5.75e-44 160
Msa0938430 MtrunA17_Chr5g0442561 25.697 502 312 16 7 477 2 473 3.70e-43 159
Msa0938430 MtrunA17_Chr7g0243761 25.567 485 302 15 10 476 11 454 4.69e-43 158
Msa0938430 MtrunA17_Chr7g0249961 37.447 235 136 6 240 469 24 252 5.71e-43 153
Msa0938430 MtrunA17_Chr8g0339461 32.055 365 199 10 117 455 109 450 7.74e-43 158
Msa0938430 MtrunA17_Chr5g0428081 26.829 492 304 15 14 476 15 479 9.05e-43 158
Msa0938430 MtrunA17_Chr8g0382021 25.979 485 301 15 15 476 39 488 1.77e-42 157
Msa0938430 MtrunA17_Chr5g0429711 26.543 486 311 14 6 476 7 461 4.75e-42 155
Msa0938430 MtrunA17_Chr5g0442541 26.000 500 306 14 7 477 2 466 7.85e-42 155
Msa0938430 MtrunA17_Chr5g0442601 26.523 509 303 16 7 477 401 876 8.34e-42 159
Msa0938430 MtrunA17_Chr5g0442601 27.778 342 190 9 89 417 36 333 1.03e-29 123
Msa0938430 MtrunA17_Chr8g0361371 27.362 508 284 17 7 473 4 467 9.12e-42 155
Msa0938430 MtrunA17_Chr8g0339631 28.641 412 234 12 83 470 87 462 1.08e-41 155
Msa0938430 MtrunA17_Chr4g0072771 25.361 485 306 12 7 476 22 465 2.02e-41 154
Msa0938430 MtrunA17_Chr3g0106251 31.949 313 183 7 174 477 3 294 3.49e-41 149
Msa0938430 MtrunA17_Chr8g0339451 30.653 398 217 12 83 455 79 442 4.08e-41 153
Msa0938430 MtrunA17_Chr5g0442521 23.819 508 309 14 7 473 2 472 1.13e-40 152
Msa0938430 MtrunA17_Chr8g0336321 28.446 457 287 16 10 450 7 439 1.37e-40 151
Msa0938430 MtrunA17_Chr8g0334861 26.815 496 300 15 7 475 3 462 2.77e-40 150
Msa0938430 MtrunA17_Chr8g0339601 32.209 326 172 10 156 455 7 309 2.86e-40 147
Msa0938430 MtrunA17_Chr4g0072761 27.406 478 296 14 10 476 15 452 4.65e-40 150
Msa0938430 MtrunA17_Chr2g0294931 26.358 497 302 18 14 476 15 481 4.69e-40 150
Msa0938430 MtrunA17_Chr4g0044501 25.553 497 309 17 10 476 10 475 5.08e-40 150
Msa0938430 MtrunA17_Chr8g0370941 26.163 516 293 18 10 474 8 486 9.90e-40 150
Msa0938430 MtrunA17_Chr5g0420801 27.475 495 292 24 5 473 2 455 1.19e-39 149
Msa0938430 MtrunA17_Chr4g0066131 26.113 494 292 14 14 473 17 471 1.44e-39 149
Msa0938430 MtrunA17_Chr5g0401851 24.752 505 315 16 8 476 8 483 1.60e-39 149
Msa0938430 MtrunA17_Chr8g0336251 28.228 457 288 16 10 450 7 439 1.80e-39 148
Msa0938430 MtrunA17_Chr5g0442491 24.558 509 311 15 7 477 2 475 3.14e-39 148
Msa0938430 MtrunA17_Chr5g0448521 25.247 507 303 14 7 477 2 468 4.29e-39 147
Msa0938430 MtrunA17_Chr5g0416741 24.898 490 322 15 12 476 15 483 5.87e-39 147
Msa0938430 MtrunA17_Chr4g0066221 26.036 507 300 19 14 481 15 485 2.01e-38 146
Msa0938430 MtrunA17_Chr8g0369341 25.984 508 307 17 4 480 1 470 3.90e-38 145
Msa0938430 MtrunA17_Chr7g0265111 26.984 504 306 20 10 477 39 516 3.92e-38 146
Msa0938430 MtrunA17_Chr8g0334831 28.032 503 253 19 7 452 3 453 5.22e-38 145
Msa0938430 MtrunA17_Chr4g0066151 25.820 488 307 11 14 476 22 479 5.61e-38 145
Msa0938430 MtrunA17_Chr3g0079731 25.545 505 300 14 12 474 8 478 7.36e-38 144
Msa0938430 MtrunA17_Chr6g0466831 28.446 457 281 17 10 453 18 441 1.10e-37 143
Msa0938430 MtrunA17_Chr5g0403641 31.724 290 158 10 215 475 223 501 1.48e-37 144
Msa0938430 MtrunA17_Chr2g0294921 26.263 495 305 17 14 476 164 630 1.99e-37 145
Msa0938430 MtrunA17_Chr8g0339441 39.583 192 96 4 284 455 217 408 2.07e-37 142
Msa0938430 MtrunA17_Chr5g0429681 27.686 484 305 17 7 473 41 496 3.25e-37 143
Msa0938430 MtrunA17_Chr4g0044521 26.441 503 296 22 6 474 2 464 5.79e-37 141
Msa0938430 MtrunA17_Chr2g0329111 25.200 500 294 17 7 462 3 466 6.74e-37 142
Msa0938430 MtrunA17_Chr4g0066281 26.069 491 295 15 14 476 16 466 6.97e-37 141
Msa0938430 MtrunA17_Chr1g0165701 26.166 493 312 17 11 476 16 483 7.67e-37 142
Msa0938430 MtrunA17_Chr6g0466841 28.009 457 283 17 10 453 18 441 9.61e-37 141
Msa0938430 MtrunA17_Chr6g0463891 25.150 501 309 18 12 476 14 484 1.15e-36 141
Msa0938430 MtrunA17_Chr8g0374931 25.806 496 306 17 14 476 15 481 1.52e-36 140
Msa0938430 MtrunA17_Chr7g0218311 26.008 496 302 19 14 476 20 483 1.60e-36 140
Msa0938430 MtrunA17_Chr8g0355221 25.948 501 306 18 11 476 16 486 2.60e-36 140
Msa0938430 MtrunA17_Chr7g0243611 29.766 299 180 7 129 423 5 277 2.66e-36 135
Msa0938430 MtrunA17_Chr5g0416821 23.722 489 318 13 12 476 16 473 3.95e-36 139
Msa0938430 MtrunA17_Chr4g0042891 27.128 376 234 12 119 475 110 464 6.33e-36 139
Msa0938430 MtrunA17_Chr5g0410941 26.411 496 299 17 14 476 27 489 7.16e-36 139
Msa0938430 MtrunA17_Chr1g0153461 36.715 207 114 4 283 472 2 208 1.41e-35 131
Msa0938430 MtrunA17_Chr4g0042931 27.959 490 295 17 10 475 7 462 1.44e-35 137
Msa0938430 MtrunA17_Chr4g0066201 26.786 504 279 20 13 476 21 474 3.01e-35 137
Msa0938430 MtrunA17_Chr7g0241801 27.609 460 261 17 7 453 6 406 6.93e-35 135
Msa0938430 MtrunA17_Chr5g0442511 23.658 503 290 16 7 473 46 490 1.36e-34 135
Msa0938430 MtrunA17_Chr6g0463851 23.904 502 311 15 13 476 14 482 3.78e-34 134
Msa0938430 MtrunA17_Chr7g0241781 27.766 461 259 18 7 453 6 406 6.24e-34 132
Msa0938430 MtrunA17_Chr2g0278721 27.176 471 303 17 1 454 508 955 6.50e-34 135
Msa0938430 MtrunA17_Chr2g0278721 25.106 470 295 16 5 453 10 443 1.63e-27 116
Msa0938430 MtrunA17_Chr7g0243711 33.195 241 141 7 254 476 78 316 7.84e-34 130
Msa0938430 MtrunA17_Chr6g0482061 26.113 494 311 16 10 475 11 478 1.34e-33 132
Msa0938430 MtrunA17_Chr4g0044481 26.353 425 246 14 10 419 27 399 2.26e-33 130
Msa0938430 MtrunA17_Chr4g0066261 24.900 502 303 17 14 476 15 481 2.38e-33 132
Msa0938430 MtrunA17_Chr2g0302991 26.963 382 227 10 118 476 110 462 2.97e-33 131
Msa0938430 MtrunA17_Chr8g0374901 24.242 495 313 17 13 476 15 478 2.99e-33 131
Msa0938430 MtrunA17_Chr2g0302961 24.597 496 314 12 8 476 3 465 9.06e-33 130
Msa0938430 MtrunA17_Chr2g0307961 25.257 487 325 15 6 478 9 470 1.36e-32 129
Msa0938430 MtrunA17_Chr6g0463861 24.597 496 304 17 14 476 15 473 2.38e-32 129
Msa0938430 MtrunA17_Chr7g0243911 35.149 202 113 4 280 464 17 217 2.81e-32 122
Msa0938430 MtrunA17_Chr4g0069611 26.981 467 286 21 5 453 9 438 2.89e-32 128
Msa0938430 MtrunA17_Chr8g0374941 25.400 500 303 22 13 476 952 1417 9.51e-32 129
Msa0938430 MtrunA17_Chr8g0374941 25.625 480 289 21 13 457 14 460 9.87e-31 126
Msa0938430 MtrunA17_Chr8g0374941 23.899 477 301 16 13 457 479 925 1.99e-29 122
Msa0938430 MtrunA17_Chr5g0427571 31.518 257 166 6 201 450 20 273 1.04e-31 123
Msa0938430 MtrunA17_Chr5g0431431 31.227 269 159 7 181 445 110 356 1.99e-31 124
Msa0938430 MtrunA17_Chr2g0294941 25.956 366 221 12 120 457 17 360 3.52e-31 124
Msa0938430 MtrunA17_Chr8g0374971 32.258 217 124 4 283 476 264 480 2.35e-30 123
Msa0938430 MtrunA17_Chr4g0066171 25.451 499 297 16 13 480 24 478 1.06e-29 121
Msa0938430 MtrunA17_Chr7g0243811 25.686 401 237 12 22 402 1 360 2.67e-29 119
Msa0938430 MtrunA17_Chr5g0409591 31.048 248 146 7 220 442 205 452 4.76e-29 119
Msa0938430 MtrunA17_Chr8g0350881 31.797 217 125 4 283 476 264 480 5.59e-29 119
Msa0938430 MtrunA17_Chr6g0454391 73.846 65 17 0 369 433 11 75 8.30e-29 110
Msa0938430 MtrunA17_Chr2g0302851 24.948 477 283 17 5 453 10 439 8.79e-29 118
Msa0938430 MtrunA17_Chr8g0361411 25.050 499 293 18 8 476 6 453 1.13e-28 118
Msa0938430 MtrunA17_Chr7g0232351 26.456 412 237 12 10 394 6 378 1.42e-28 116
Msa0938430 MtrunA17_Chr1g0207881 41.085 129 70 1 354 476 256 384 2.37e-28 116
Msa0938430 MtrunA17_Chr8g0367221 24.726 457 306 14 10 452 798 1230 3.74e-28 119
Msa0938430 MtrunA17_Chr8g0367221 24.681 470 289 18 10 452 12 443 6.05e-27 115
Msa0938430 MtrunA17_Chr8g0367221 25.159 473 284 17 10 452 1288 1720 1.88e-25 110
Msa0938430 MtrunA17_Chr6g0464091 25.000 472 300 17 3 453 10 448 4.78e-28 116
Msa0938430 MtrunA17_Chr7g0250021 28.267 329 209 10 5 331 7 310 6.07e-28 113
Msa0938430 MtrunA17_Chr3g0092031 33.714 175 103 5 287 453 6 175 3.63e-27 108
Msa0938430 MtrunA17_Chr3g0079711 32.432 185 103 5 311 474 3 186 9.80e-27 106
Msa0938430 MtrunA17_Chr2g0278741 25.902 471 302 18 1 453 84 525 1.30e-25 110
Msa0938430 MtrunA17_Chr7g0231631 30.603 232 147 6 252 476 35 259 1.65e-24 102
Msa0938430 MtrunA17_Chr8g0337381 41.085 129 66 3 355 479 2 124 7.31e-24 97.1
Msa0938430 MtrunA17_Chr3g0118731 41.441 111 64 1 62 172 28 137 1.31e-23 97.1
Msa0938430 MtrunA17_Chr4g0039881 31.148 244 147 10 220 453 183 415 2.83e-23 102
Msa0938430 MtrunA17_Chr1g0196851 23.542 480 287 17 6 453 45 476 5.12e-21 95.9
Msa0938430 MtrunA17_Chr3g0118741 60.345 58 23 0 6 63 2 59 7.97e-21 86.3
Msa0938430 MtrunA17_Chr4g0029131 23.493 481 302 17 6 460 8 448 1.94e-19 91.7
Msa0938430 MtrunA17_Chr4g0066141 33.088 136 77 2 355 476 216 351 1.52e-18 87.0
Msa0938430 MtrunA17_Chr8g0357361 34.043 141 84 3 283 419 116 251 2.78e-18 84.7
Msa0938430 MtrunA17_Chr4g0040691 26.923 234 153 8 259 481 236 462 4.44e-17 83.6
Msa0938430 MtrunA17_Chr6g0454241 77.500 40 9 0 170 209 39 78 7.38e-16 72.8
Msa0938430 MtrunA17_Chr6g0454241 73.171 41 11 0 436 476 1 41 3.77e-15 70.5
Msa0938430 MtrunA17_Chr4g0040711 27.749 191 126 5 273 453 247 435 2.70e-15 78.2
Msa0938430 MtrunA17_Chr7g0267931 75.676 37 8 1 15 50 25 61 1.23e-14 68.6
Msa0938430 MtrunA17_Chr4g0029151 27.778 180 117 5 287 453 265 444 2.22e-14 75.1
Msa0938430 MtrunA17_Chr2g0283041 26.744 172 113 5 287 447 258 427 2.89e-14 74.7
Msa0938430 MtrunA17_Chr7g0243731 38.462 65 40 0 355 419 9 73 5.14e-13 64.3
Msa0938430 MtrunA17_Chr2g0319791 28.646 192 123 6 285 464 257 446 7.51e-13 70.5
Msa0938430 MtrunA17_Chr2g0319761 26.804 194 132 5 281 464 253 446 2.14e-12 68.9
Msa0938430 MtrunA17_Chr8g0334841 31.875 160 92 5 200 354 11 158 2.52e-12 65.1
Msa0938430 MtrunA17_Chr5g0442501 24.405 336 209 12 7 331 2 303 8.88e-12 66.2
Msa0938430 MtrunA17_Chr6g0454311 58.824 51 21 0 172 222 6 56 1.47e-11 59.7
Msa0938430 MtrunA17_Chr2g0319751 27.041 196 129 6 281 464 730 923 1.86e-11 66.6
Msa0938430 MtrunA17_Chr7g0243721 33.333 108 60 3 229 330 34 135 2.37e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0938430 AT1G22360.1 57.469 482 202 3 1 480 1 481 0.0 591
Msa0938430 AT1G22340.1 55.672 476 207 4 7 479 10 484 0.0 574
Msa0938430 AT1G22360.2 56.224 482 196 4 1 480 1 469 0.0 569
Msa0938430 AT1G22380.1 54.412 476 214 3 7 480 10 484 0.0 561
Msa0938430 AT1G22400.1 54.054 481 213 5 6 481 9 486 0.0 559
Msa0938430 AT1G22370.2 56.067 478 202 4 5 480 8 479 0.0 553
Msa0938430 AT1G78270.1 52.610 479 222 5 2 477 5 481 0.0 530
Msa0938430 AT1G22370.1 55.116 303 134 2 180 480 7 309 1.71e-115 342
Msa0938430 AT5G59590.1 34.591 477 265 12 7 473 7 446 9.07e-88 276
Msa0938430 AT5G59580.1 34.937 478 259 15 8 473 7 444 1.79e-84 268
Msa0938430 AT3G46670.1 33.192 473 271 12 10 473 9 445 9.63e-83 263
Msa0938430 AT5G38010.1 32.790 491 273 15 1 474 1 451 5.03e-80 256
Msa0938430 AT3G46660.1 33.758 471 269 14 12 473 16 452 1.49e-78 253
Msa0938430 AT3G21560.1 31.717 495 284 14 9 479 11 475 1.87e-77 251
Msa0938430 AT2G36970.1 30.924 498 294 14 1 476 1 470 2.65e-77 250
Msa0938430 AT3G11340.1 31.013 474 288 11 8 477 7 445 9.31e-77 248
Msa0938430 AT3G55700.1 33.193 476 274 15 12 477 10 451 1.74e-76 247
Msa0938430 AT3G46690.1 32.839 472 283 12 7 474 6 447 8.81e-75 243
Msa0938430 AT5G05900.1 31.924 473 277 11 10 473 8 444 1.32e-74 242
Msa0938430 AT4G15490.1 31.111 495 293 14 6 480 4 470 2.35e-74 242
Msa0938430 AT3G46680.1 31.237 477 280 11 8 473 7 446 7.35e-74 240
Msa0938430 AT5G38040.1 31.545 466 274 12 18 474 18 447 1.87e-73 239
Msa0938430 AT5G05860.1 32.000 475 283 11 10 478 9 449 4.69e-73 238
Msa0938430 AT4G15500.1 31.967 488 281 14 9 477 8 463 1.90e-72 237
Msa0938430 AT5G05870.1 31.656 477 286 9 10 476 8 454 2.60e-72 236
Msa0938430 AT3G46650.1 30.297 472 269 11 8 471 8 427 1.49e-71 233
Msa0938430 AT2G28080.1 32.008 478 288 13 14 479 22 474 5.04e-71 233
Msa0938430 AT3G46720.1 30.638 470 283 10 8 473 7 437 6.29e-71 232
Msa0938430 AT3G46700.1 31.106 479 279 14 8 476 7 444 1.58e-69 229
Msa0938430 AT4G15480.1 30.992 484 293 13 10 476 19 478 5.95e-69 228
Msa0938430 AT5G05880.1 30.591 474 283 13 10 473 8 445 1.50e-68 226
Msa0938430 AT5G05890.1 31.646 474 282 12 10 473 8 449 4.38e-68 225
Msa0938430 AT1G05680.1 30.802 474 292 11 10 477 6 449 1.42e-67 224
Msa0938430 AT1G05675.1 30.672 476 286 11 10 473 6 449 1.66e-67 223
Msa0938430 AT3G02100.1 30.470 489 291 16 1 473 1 456 5.37e-67 223
Msa0938430 AT2G31750.1 29.707 478 300 12 8 477 6 455 4.79e-66 220
Msa0938430 AT3G55710.1 32.917 480 274 18 12 477 10 455 6.21e-66 219
Msa0938430 AT2G31750.2 29.707 478 300 12 8 477 6 455 6.70e-66 220
Msa0938430 AT2G43840.2 29.583 480 295 12 8 479 5 449 6.94e-65 216
Msa0938430 AT2G26480.1 29.072 485 291 14 7 479 5 448 3.79e-64 214
Msa0938430 AT2G43840.1 29.375 480 296 12 8 479 5 449 6.48e-64 214
Msa0938430 AT2G23260.1 31.967 488 289 17 1 478 1 455 9.80e-63 211
Msa0938430 AT2G23250.1 32.558 473 272 17 13 476 1 435 5.19e-62 209
Msa0938430 AT2G43820.1 29.461 482 297 14 6 479 3 449 1.36e-61 208
Msa0938430 AT2G31790.1 30.165 484 286 13 7 473 5 453 1.38e-60 205
Msa0938430 AT4G01070.1 31.535 482 259 16 6 455 4 446 1.01e-58 201
Msa0938430 AT2G36790.1 32.079 505 277 17 10 477 13 488 2.07e-57 198
Msa0938430 AT2G36800.1 30.099 505 288 16 10 477 12 488 8.26e-57 196
Msa0938430 AT1G05560.1 27.515 487 295 15 9 476 4 451 1.12e-56 195
Msa0938430 AT1G05560.2 27.515 487 295 15 9 476 54 501 3.16e-56 195
Msa0938430 AT2G15480.1 29.142 501 309 12 1 476 1 480 1.78e-55 192
Msa0938430 AT2G15490.3 29.472 492 301 12 10 476 7 477 2.75e-55 192
Msa0938430 AT2G15490.1 29.293 495 301 12 10 476 7 480 8.27e-55 191
Msa0938430 AT4G34131.1 27.273 495 323 11 1 475 1 478 1.18e-54 190
Msa0938430 AT4G15550.1 29.328 491 293 16 9 475 12 472 3.53e-54 189
Msa0938430 AT2G30140.1 29.461 482 290 15 6 476 9 451 4.19e-54 188
Msa0938430 AT2G36770.1 27.579 504 301 16 10 477 14 489 4.56e-54 189
Msa0938430 AT2G15480.2 29.159 511 306 13 1 476 1 490 4.96e-54 189
Msa0938430 AT2G30140.2 29.461 482 289 15 6 476 9 450 6.48e-54 187
Msa0938430 AT1G05530.1 28.221 489 296 17 8 477 3 455 7.66e-54 187
Msa0938430 AT4G14090.1 28.866 485 297 17 3 475 6 454 9.54e-54 187
Msa0938430 AT2G36780.1 28.226 496 308 14 10 477 14 489 1.26e-52 185
Msa0938430 AT1G24100.1 29.132 484 294 13 8 476 9 458 4.12e-52 183
Msa0938430 AT3G53150.1 26.419 511 317 12 7 477 19 510 6.61e-52 184
Msa0938430 AT5G17050.1 27.197 478 314 12 6 477 8 457 6.77e-52 182
Msa0938430 AT2G16890.2 29.980 507 267 22 10 476 9 467 3.75e-51 181
Msa0938430 AT2G36760.1 27.821 514 287 18 10 477 14 489 5.45e-51 181
Msa0938430 AT3G53160.1 29.388 490 310 13 10 477 8 483 1.04e-50 180
Msa0938430 AT1G01420.1 30.426 493 277 16 9 472 7 462 1.33e-50 179
Msa0938430 AT5G26310.1 27.327 505 287 15 8 475 5 466 1.36e-50 179
Msa0938430 AT1G01420.2 30.426 493 277 16 9 472 10 465 1.41e-50 179
Msa0938430 AT5G66690.1 27.202 511 280 16 8 475 5 466 2.13e-50 179
Msa0938430 AT2G36750.1 28.094 509 291 21 10 477 10 484 2.87e-50 179
Msa0938430 AT1G30530.1 27.368 475 309 13 7 477 9 451 6.32e-50 177
Msa0938430 AT2G30150.2 28.661 478 292 14 10 476 13 452 6.65e-50 177
Msa0938430 AT1G10400.1 29.979 487 292 17 8 475 5 461 1.39e-49 176
Msa0938430 AT3G50740.1 27.075 506 293 17 8 475 5 472 3.36e-49 176
Msa0938430 AT5G17030.1 26.096 479 317 11 6 477 8 456 8.03e-49 174
Msa0938430 AT2G30150.1 28.481 474 290 14 14 476 1 436 2.26e-48 172
Msa0938430 AT5G17040.1 26.793 474 303 11 10 477 5 440 8.98e-48 171
Msa0938430 AT5G14860.1 29.563 504 282 21 10 476 8 475 1.71e-47 171
Msa0938430 AT1G01390.1 30.661 499 279 17 9 479 7 466 2.88e-46 167
Msa0938430 AT5G37950.1 30.585 376 222 13 25 394 1 343 3.65e-46 164
Msa0938430 AT1G01390.2 30.661 499 279 17 9 479 24 483 4.23e-46 167
Msa0938430 AT5G17040.2 28.947 304 203 3 175 477 47 338 1.47e-45 162
Msa0938430 AT4G34138.1 27.006 511 294 17 8 478 9 480 5.14e-45 164
Msa0938430 AT4G36770.1 28.333 480 273 15 10 457 4 444 7.57e-45 163
Msa0938430 AT3G16520.3 29.268 369 225 12 118 474 113 457 1.30e-44 163
Msa0938430 AT4G34135.1 28.112 498 306 13 6 475 7 480 1.73e-44 163
Msa0938430 AT3G16520.2 29.915 351 210 12 118 456 113 439 7.80e-44 160
Msa0938430 AT5G37950.2 30.933 375 216 13 25 394 1 337 9.08e-44 157
Msa0938430 AT3G16520.1 29.915 351 210 12 118 456 113 439 1.21e-43 160
Msa0938430 AT3G22250.1 27.426 474 276 14 7 449 5 441 2.57e-43 159
Msa0938430 AT5G03490.1 28.926 484 293 18 6 475 15 461 3.34e-43 159
Msa0938430 AT1G73880.1 30.382 497 291 21 3 477 4 467 1.14e-42 157
Msa0938430 AT5G65550.1 27.922 462 290 14 8 454 7 440 9.86e-41 152
Msa0938430 AT3G21790.1 27.112 509 291 13 12 476 6 478 5.35e-40 150
Msa0938430 AT1G51210.1 28.509 456 273 17 8 451 18 432 1.37e-39 148
Msa0938430 AT3G21780.1 30.491 387 225 10 114 476 102 468 7.04e-39 147
Msa0938430 AT2G29710.1 26.613 496 305 19 7 477 2 463 1.12e-38 147
Msa0938430 AT2G18560.1 31.392 309 168 10 187 469 79 369 1.45e-38 144
Msa0938430 AT2G16890.3 28.233 464 246 21 10 434 9 424 1.63e-38 145
Msa0938430 AT3G21800.1 26.210 496 308 13 12 476 7 475 3.56e-38 145
Msa0938430 AT2G29740.1 27.016 496 306 16 6 473 4 471 1.02e-37 144
Msa0938430 AT1G07260.1 28.278 389 239 12 105 477 108 472 1.81e-37 143
Msa0938430 AT2G18570.1 25.253 495 299 17 8 469 3 459 6.52e-37 142
Msa0938430 AT1G07250.1 29.412 374 229 11 118 477 121 473 8.20e-37 142
Msa0938430 AT5G49690.1 26.096 456 290 16 10 452 10 431 1.08e-36 141
Msa0938430 AT4G15280.1 27.579 504 300 15 8 477 2 474 1.95e-36 140
Msa0938430 AT4G15280.2 27.600 500 297 15 12 477 38 506 2.78e-36 140
Msa0938430 AT3G21760.1 25.731 513 295 12 12 476 6 480 3.13e-36 140
Msa0938430 AT2G29730.1 25.347 505 300 18 7 477 2 463 5.49e-35 136
Msa0938430 AT4G15260.1 31.034 290 163 7 212 477 79 355 6.50e-34 131
Msa0938430 AT3G21750.1 26.471 510 293 16 8 477 2 469 1.14e-33 132
Msa0938430 AT2G29750.1 25.000 496 311 17 12 477 10 474 2.19e-32 129
Msa0938430 AT5G12890.1 26.565 527 298 23 1 480 1 485 3.06e-31 126
Msa0938430 AT1G07240.1 29.286 280 170 7 215 477 208 476 6.76e-31 125
Msa0938430 AT2G22590.1 26.782 463 292 13 8 452 13 446 6.57e-30 122
Msa0938430 AT4G01070.2 29.326 341 187 13 6 331 4 305 4.03e-25 106
Msa0938430 AT4G34135.2 27.988 343 207 10 6 331 7 326 1.33e-22 99.0
Msa0938430 AT1G64910.1 26.681 461 273 19 10 453 6 418 1.60e-22 100
Msa0938430 AT4G27570.1 23.913 460 296 18 8 453 5 424 3.78e-21 96.3
Msa0938430 AT1G06000.1 32.683 205 123 5 287 478 233 435 1.16e-20 94.7
Msa0938430 AT4G27560.1 23.696 460 297 18 8 453 5 424 8.34e-20 92.4
Msa0938430 AT2G22930.1 24.066 482 301 15 10 476 6 437 5.55e-19 89.7
Msa0938430 AT3G29630.1 24.744 489 296 20 8 476 4 440 5.94e-18 86.7
Msa0938430 AT5G53990.1 29.944 177 112 5 287 453 244 418 6.30e-18 86.7
Msa0938430 AT4G09500.2 23.861 461 290 16 8 453 4 418 1.48e-17 85.5
Msa0938430 AT5G54010.1 23.896 498 305 20 8 479 4 453 1.58e-17 85.5
Msa0938430 AT2G23210.1 26.510 298 188 11 1 296 1 269 1.95e-17 83.2
Msa0938430 AT4G09500.1 30.508 177 111 5 287 453 219 393 3.91e-17 84.0
Msa0938430 AT3G29630.2 29.703 202 125 6 286 476 219 414 8.79e-17 82.8
Msa0938430 AT1G50580.1 23.625 491 307 19 8 481 4 443 3.36e-16 81.3
Msa0938430 AT5G54060.1 24.942 433 261 16 1 409 1 393 1.68e-14 75.9
Msa0938430 AT1G64920.1 29.834 181 111 6 287 453 244 422 1.12e-13 73.6

Find 120 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTTTCAATAATTAATT+TGG 0.097840 6_3:-10183461 Msa0938430:three_prime_UTR
ATTGATGAATTTGTGGATTT+TGG 0.148483 6_3:+10184161 None:intergenic
TTATTACTTGATTGACAATT+TGG 0.192803 6_3:+10183410 None:intergenic
TGGGGTTAATGATGGATTAT+TGG 0.226563 6_3:-10183441 Msa0938430:three_prime_UTR
TAAGTTCACAATAGGGTTTA+AGG 0.228983 6_3:+10185252 None:intergenic
AAGACATTGTTGACTTTATC+AGG 0.230929 6_3:-10184360 Msa0938430:CDS
ATGAGTGATTTCTTTAAATT+AGG 0.244587 6_3:+10183284 None:intergenic
AAAGGACAATGCTATAAAAT+TGG 0.246131 6_3:+10185657 None:intergenic
CCTAGTAATAAGTTCACAAT+AGG 0.312390 6_3:+10185244 None:intergenic
GAACTTGGACAAAGTGATTA+AGG 0.324980 6_3:-10183546 Msa0938430:CDS
ACAAAAGTAGATTGGATTCC+AGG 0.332750 6_3:-10184403 Msa0938430:CDS
ATATGACCTTGAACTGGATA+TGG 0.336214 6_3:+10185503 None:intergenic
ATTGTTTCAATAATTAATTT+GGG 0.337776 6_3:-10183460 Msa0938430:three_prime_UTR
AAATTCAACATAATATCATT+TGG 0.341744 6_3:+10184328 None:intergenic
AAAATCAGTCAAACCATCTA+AGG 0.342054 6_3:+10185370 None:intergenic
GTGGACACCAACTTGCTATT+AGG 0.356812 6_3:+10183885 None:intergenic
ATTTGTAATGAATGGGAGAT+TGG 0.359619 6_3:-10183722 Msa0938430:CDS
CCTATTGTGAACTTATTACT+AGG 0.362659 6_3:-10185244 Msa0938430:CDS
AATTAATTTGGGGTTAATGA+TGG 0.366102 6_3:-10183449 Msa0938430:three_prime_UTR
TTATCTTACAAATGGATGTT+TGG 0.366166 6_3:-10184428 Msa0938430:CDS
CCTAGTGGTGTTAGACCATC+TGG 0.366909 6_3:+10185332 None:intergenic
GGAAAACTACTTCACCTTAG+AGG 0.369302 6_3:-10185461 Msa0938430:CDS
GTTTGGAAACAAAAGTAGAT+TGG 0.372644 6_3:-10184411 Msa0938430:CDS
GCAAATGTTGGAATTTGCTT+GGG 0.375617 6_3:-10184017 Msa0938430:CDS
TCCGTTGTTTATGTTAATTT+CGG 0.379062 6_3:-10184064 Msa0938430:CDS
AGAGGTCCAAATGCCTTAGA+TGG 0.381340 6_3:-10185383 Msa0938430:CDS
GTAGATTTATTTGTAATGAA+TGG 0.382641 6_3:-10183730 Msa0938430:CDS
AAATCCACAAATTCATCAAT+TGG 0.393774 6_3:-10184158 Msa0938430:CDS
ACTCTTTAGATTCCAACCTT+TGG 0.394855 6_3:-10184135 Msa0938430:CDS
GTCAAACCATCTAAGGCATT+TGG 0.401739 6_3:+10185377 None:intergenic
GGTGTTGCTTAAACAAAATT+AGG 0.402028 6_3:-10183522 Msa0938430:exon
TCAGAAACTAAGCAAGTAAC+TGG 0.402772 6_3:+10185197 None:intergenic
GTTGGAATTTGCTTGGGGTT+TGG 0.405650 6_3:-10184011 Msa0938430:CDS
TAGATTTATTTGTAATGAAT+GGG 0.407079 6_3:-10183729 Msa0938430:CDS
GAGTCCAATTGATGAATTTG+TGG 0.412904 6_3:+10184154 None:intergenic
AGTATCTTCTTTCCAAAGGT+TGG 0.414296 6_3:+10184123 None:intergenic
AGCAAATGTTGGAATTTGCT+TGG 0.422319 6_3:-10184018 Msa0938430:CDS
AGGTTATGTGAAATCCTCTA+AGG 0.427688 6_3:+10185447 None:intergenic
GGTTTAATAATGAAGGTAAA+GGG 0.432184 6_3:+10184182 None:intergenic
CTAGTAATAAGTTCACAATA+GGG 0.446275 6_3:+10185245 None:intergenic
ATTAGGCCGGACCTTGTCAT+TGG 0.452933 6_3:-10183959 Msa0938430:CDS
AGCAAATTCCAACATTTGCT+CGG 0.454558 6_3:+10184021 None:intergenic
TGGTTTAATAATGAAGGTAA+AGG 0.468725 6_3:+10184181 None:intergenic
GATGAGAGTTATCTTACAAA+TGG 0.471406 6_3:-10184436 Msa0938430:CDS
GAATTGATGGTGGGAGAGAA+AGG 0.475632 6_3:-10183647 Msa0938430:CDS
AAGATACTGAGTGTCTTGAT+TGG 0.480832 6_3:-10184108 Msa0938430:CDS
CAAATAAATCTACAGTCTGT+TGG 0.481604 6_3:+10183740 None:intergenic
AGGCCGGACCTTGTCATTGG+TGG 0.483422 6_3:-10183956 Msa0938430:CDS
ACGAATGAAATTGCAGATAG+AGG 0.484929 6_3:-10183908 Msa0938430:CDS
AACAACGGATCCCGGCTCCT+TGG 0.486045 6_3:+10184078 None:intergenic
GAGCCACCAATGACAAGGTC+CGG 0.486725 6_3:+10183953 None:intergenic
ATGATTCCATATCCAGTTCA+AGG 0.487081 6_3:-10185509 Msa0938430:CDS
TATTATGTTTGCAAGTTATG+AGG 0.488272 6_3:+10185590 None:intergenic
GTGATTTCTTTAAATTAGGT+TGG 0.489187 6_3:+10183288 None:intergenic
CAAGCTGATCAATGAATTGA+TGG 0.489788 6_3:-10183660 Msa0938430:CDS
GTGCAAATTCTTCAGCAGCT+TGG 0.489819 6_3:+10185153 None:intergenic
TCTTGATTGGCTTGAATCCA+AGG 0.492781 6_3:-10184095 Msa0938430:CDS
CATCAATTCATTGATCAGCT+TGG 0.495941 6_3:+10183661 None:intergenic
TGGTTCAACACTTTCTCTTG+TGG 0.496098 6_3:+10183866 None:intergenic
GTAAACTTAGTACCTTTGAA+TGG 0.497967 6_3:+10185044 None:intergenic
TCCAGCGCATATGCTTTCAA+TGG 0.498870 6_3:+10183799 None:intergenic
GTCAAGAATCCGCCGATTGA+AGG 0.503038 6_3:+10183842 None:intergenic
TTGGCTTGAATCCAAGGAGC+CGG 0.504128 6_3:-10184089 Msa0938430:CDS
GCAAATTCCAACATTTGCTC+GGG 0.504999 6_3:+10184022 None:intergenic
GGATTGATATGACCTTGAAC+TGG 0.505898 6_3:+10185497 None:intergenic
CTTACTGATTGACAAAGAGT+TGG 0.519557 6_3:+10185284 None:intergenic
GCAAGTAACTGGTGGGACAT+TGG 0.523788 6_3:+10185208 None:intergenic
TAATGAATGGGAGATTGGTA+TGG 0.527344 6_3:-10183717 Msa0938430:CDS
GAGGTTGAGATTCTAACAAA+AGG 0.527964 6_3:+10185714 None:intergenic
AATGAAGGTAAAGGGCCGAT+AGG 0.530778 6_3:+10184190 None:intergenic
GTGTTGAACCACCCTTCAAT+CGG 0.531273 6_3:-10183854 Msa0938430:CDS
GATTCTTGACTCATTGTGGA+TGG 0.539523 6_3:-10183829 Msa0938430:CDS
GAATGTGAAGAGAGAGGAGT+TGG 0.539604 6_3:-10183684 Msa0938430:CDS
ATGAAGGTAAAGGGCCGATA+GGG 0.540303 6_3:+10184191 None:intergenic
ACCATTGAAAGCATATGCGC+TGG 0.543602 6_3:-10183800 Msa0938430:CDS
TCAAGAATCCGCCGATTGAA+GGG 0.546732 6_3:+10183843 None:intergenic
TATGACACCCGAGCAAATGT+TGG 0.552021 6_3:-10184029 Msa0938430:CDS
TGGCTTGAATCCAAGGAGCC+GGG 0.553822 6_3:-10184088 Msa0938430:CDS
TGCAATGGAGTTGAAGAAGA+AGG 0.554838 6_3:-10183606 Msa0938430:CDS
AAGAGTAATCAACGATTACA+TGG 0.555084 6_3:-10183338 Msa0938430:three_prime_UTR
TTAACATAAACAACGGATCC+CGG 0.555991 6_3:+10184070 None:intergenic
CTGGAGTGCCGATGTTGTGT+TGG 0.557220 6_3:-10183781 Msa0938430:CDS
GGCGGATTCTTGACTCATTG+TGG 0.560659 6_3:-10183833 Msa0938430:CDS
ACTCAGTATCTTCTTTCCAA+AGG 0.563526 6_3:+10184119 None:intergenic
TGGTTGTTCATACATGAACT+TGG 0.565181 6_3:-10183561 Msa0938430:CDS
GGAGTTGAAGAAGAAGGCAC+AGG 0.570441 6_3:-10183600 Msa0938430:CDS
AGCTTTGAAACCATCCCAGA+TGG 0.571170 6_3:-10185347 Msa0938430:CDS
CAAATGTTGGAATTTGCTTG+GGG 0.573887 6_3:-10184016 Msa0938430:CDS
TTGTTAGAATCTCAACCTCA+CGG 0.580816 6_3:-10185710 Msa0938430:five_prime_UTR
ATCAATCCAATGTTGAAACT+AGG 0.583883 6_3:-10185482 Msa0938430:CDS
TGGTGTTAGACCATCTGGGA+TGG 0.585226 6_3:+10185337 None:intergenic
CCAGATGGTCTAACACCACT+AGG 0.586590 6_3:-10185332 Msa0938430:CDS
GATGTTGAGGCAAAATGCAA+TGG 0.594005 6_3:-10183621 Msa0938430:CDS
AAACTAAGCAAGTAACTGGT+GGG 0.599605 6_3:+10185201 None:intergenic
AGTGCATCAAAGCATAGTAA+TGG 0.600263 6_3:+10183499 None:intergenic
GAGAGAAAGGAAAGATGTTG+AGG 0.604177 6_3:-10183634 Msa0938430:CDS
AGAGGTGTCATACCATTCAA+AGG 0.605847 6_3:-10185056 Msa0938430:intron
TTGTTTCAATAATTAATTTG+GGG 0.607384 6_3:-10183459 Msa0938430:three_prime_UTR
AAACGTTTGCTCAAATCAAG+AGG 0.613843 6_3:-10185401 Msa0938430:CDS
TTGAACCACCCTTCAATCGG+CGG 0.615937 6_3:-10183851 Msa0938430:CDS
GCACAGGAGAACACTATACC+AGG 0.622338 6_3:-10183584 Msa0938430:CDS
GCCGAAATTAACATAAACAA+CGG 0.626922 6_3:+10184063 None:intergenic
GAAACTAAGCAAGTAACTGG+TGG 0.629351 6_3:+10185200 None:intergenic
TCACGGAGCCACCAATGACA+AGG 0.633788 6_3:+10183948 None:intergenic
CTAGTGGTGTTAGACCATCT+GGG 0.639019 6_3:+10185333 None:intergenic
CTGATCAATGAATTGATGGT+GGG 0.642727 6_3:-10183656 Msa0938430:CDS
CGATACGAATGTGAAGAGAG+AGG 0.648365 6_3:-10183690 Msa0938430:CDS
ATAGAGGCCTAATAGCAAGT+TGG 0.652566 6_3:-10183892 Msa0938430:CDS
ACTTGCAAACATAATAACAA+AGG 0.653835 6_3:-10185583 Msa0938430:five_prime_UTR
GCTGATCAATGAATTGATGG+TGG 0.656580 6_3:-10183657 Msa0938430:CDS
GGTCTAACACCACTAGGTGA+TGG 0.656884 6_3:-10185326 Msa0938430:CDS
TATGGAATCATCACAGCATG+TGG 0.657258 6_3:+10185521 None:intergenic
AAACTCAGTTGACAAAATCA+CGG 0.659019 6_3:+10183931 None:intergenic
TTCATGTATGAACAACCACC+TGG 0.662738 6_3:+10183566 None:intergenic
AGAATCCGCCGATTGAAGGG+TGG 0.673563 6_3:+10183846 None:intergenic
ATTGTATTCAGTGTTGACAA+AGG 0.675767 6_3:+10185427 None:intergenic
CTAACATCACCATCACCTAG+TGG 0.680677 6_3:+10185317 None:intergenic
CTTGGACAAAGTGATTAAGG+AGG 0.711231 6_3:-10183543 Msa0938430:CDS
CCAAACAGATAAAATCCGTG+AGG 0.736190 6_3:+10185695 None:intergenic
CAGGAGAACACTATACCAGG+TGG 0.743950 6_3:-10183581 Msa0938430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTATAATATTAAAA+GGG + chr6_3:10184135-10184154 None:intergenic 0.0%
!! AAAAATATTATAATATTAAA+AGG + chr6_3:10184136-10184155 None:intergenic 0.0%
!!! TTATTTTTTAAAATTTAGGA+AGG - chr6_3:10184338-10184357 Msa0938430:CDS 10.0%
!!! TATTTTTTAAAATTTAGGAA+GGG - chr6_3:10184339-10184358 Msa0938430:CDS 10.0%
!! TATTGTTTCAATAATTAATT+TGG - chr6_3:10185568-10185587 Msa0938430:five_prime_UTR 10.0%
!! ATTGTTTCAATAATTAATTT+GGG - chr6_3:10185569-10185588 Msa0938430:five_prime_UTR 10.0%
!! TTTAATAGAAGAAGAAAAAA+AGG + chr6_3:10183393-10183412 None:intergenic 15.0%
!!! ATTTTTTAAAATTTAGGAAG+GGG - chr6_3:10184340-10184359 Msa0938430:CDS 15.0%
!!! AATGAAAGTTTTTAATTTGA+CGG + chr6_3:10184500-10184519 None:intergenic 15.0%
!! AAATTCAACATAATATCATT+TGG + chr6_3:10184704-10184723 None:intergenic 15.0%
!! TAGATTTATTTGTAATGAAT+GGG - chr6_3:10185300-10185319 Msa0938430:CDS 15.0%
!!! TTGTTTCAATAATTAATTTG+GGG - chr6_3:10185570-10185589 Msa0938430:five_prime_UTR 15.0%
!! ATGAAAAATAGAGAACATTT+GGG + chr6_3:10183903-10183922 None:intergenic 20.0%
!! GTAGATTTATTTGTAATGAA+TGG - chr6_3:10185299-10185318 Msa0938430:CDS 20.0%
!! TTATTACTTGATTGACAATT+TGG + chr6_3:10185622-10185641 None:intergenic 20.0%
!! ATGAGTGATTTCTTTAAATT+AGG + chr6_3:10185748-10185767 None:intergenic 20.0%
! AAAGGACAATGCTATAAAAT+TGG + chr6_3:10183375-10183394 None:intergenic 25.0%
! TATTATGTTTGCAAGTTATG+AGG + chr6_3:10183442-10183461 None:intergenic 25.0%
! ACTTGCAAACATAATAACAA+AGG - chr6_3:10183446-10183465 Msa0938430:three_prime_UTR 25.0%
! AAGGAGAGAATTATCAAAAA+TGG - chr6_3:10183465-10183484 Msa0938430:three_prime_UTR 25.0%
! AGGAGAGAATTATCAAAAAT+GGG - chr6_3:10183466-10183485 Msa0938430:three_prime_UTR 25.0%
! CTAGTAATAAGTTCACAATA+GGG + chr6_3:10183787-10183806 None:intergenic 25.0%
! GATGAAAAATAGAGAACATT+TGG + chr6_3:10183904-10183923 None:intergenic 25.0%
!!! AAAGTTTTTAATTTGACGGT+TGG + chr6_3:10184496-10184515 None:intergenic 25.0%
! TTCATACACACACATATATA+AGG + chr6_3:10184535-10184554 None:intergenic 25.0%
! TTATCTTACAAATGGATGTT+TGG - chr6_3:10184601-10184620 Msa0938430:intron 25.0%
! GGTTTAATAATGAAGGTAAA+GGG + chr6_3:10184850-10184869 None:intergenic 25.0%
! TGGTTTAATAATGAAGGTAA+AGG + chr6_3:10184851-10184870 None:intergenic 25.0%
!!! GGATTTTGGTTTAATAATGA+AGG + chr6_3:10184857-10184876 None:intergenic 25.0%
!! ATTGATGAATTTGTGGATTT+TGG + chr6_3:10184871-10184890 None:intergenic 25.0%
! AAATCCACAAATTCATCAAT+TGG - chr6_3:10184871-10184890 Msa0938430:intron 25.0%
! TCCGTTGTTTATGTTAATTT+CGG - chr6_3:10184965-10184984 Msa0938430:intron 25.0%
!! AATTAATTTGGGGTTAATGA+TGG - chr6_3:10185580-10185599 Msa0938430:five_prime_UTR 25.0%
! AAACTCTATGAATATGAACT+TGG + chr6_3:10185649-10185668 None:intergenic 25.0%
! GTGATTTCTTTAAATTAGGT+TGG + chr6_3:10185744-10185763 None:intergenic 25.0%
ATCAATCCAATGTTGAAACT+AGG - chr6_3:10183547-10183566 Msa0938430:CDS 30.0%
! AGTTTTCCTAGTTTCAACAT+TGG + chr6_3:10183556-10183575 None:intergenic 30.0%
!! ATTGTATTCAGTGTTGACAA+AGG + chr6_3:10183605-10183624 None:intergenic 30.0%
AAAATCAGTCAAACCATCTA+AGG + chr6_3:10183662-10183681 None:intergenic 30.0%
TAAGTTCACAATAGGGTTTA+AGG + chr6_3:10183780-10183799 None:intergenic 30.0%
CCTAGTAATAAGTTCACAAT+AGG + chr6_3:10183788-10183807 None:intergenic 30.0%
CCTATTGTGAACTTATTACT+AGG - chr6_3:10183785-10183804 Msa0938430:CDS 30.0%
! TTTCGATCTTTTGTAGAAAG+AGG - chr6_3:10183955-10183974 Msa0938430:CDS 30.0%
GTAAACTTAGTACCTTTGAA+TGG + chr6_3:10183988-10184007 None:intergenic 30.0%
CATATATATATCCATTGAGC+CGG - chr6_3:10184067-10184086 Msa0938430:CDS 30.0%
! ACAATTTTATTGTTTCGCCT+AGG + chr6_3:10184111-10184130 None:intergenic 30.0%
! CTTACTCTAAGAGTAAGTAT+TGG - chr6_3:10184298-10184317 Msa0938430:CDS 30.0%
GCAGATAGTTGAAATACTTT+CGG + chr6_3:10184400-10184419 None:intergenic 30.0%
ACTCTATGAGTTATAAACTC+CGG + chr6_3:10184451-10184470 None:intergenic 30.0%
AACGAAAGTTAATTGCTTGA+AGG + chr6_3:10184558-10184577 None:intergenic 30.0%
GATGAGAGTTATCTTACAAA+TGG - chr6_3:10184593-10184612 Msa0938430:intron 30.0%
GTTTGGAAACAAAAGTAGAT+TGG - chr6_3:10184618-10184637 Msa0938430:intron 30.0%
TTCCAGGTTTGAAAAACTTT+CGG - chr6_3:10184642-10184661 Msa0938430:intron 30.0%
!! AAGACATTGTTGACTTTATC+AGG - chr6_3:10184669-10184688 Msa0938430:intron 30.0%
GTAAAAAGAAGGAACTATAG+AGG + chr6_3:10184819-10184838 None:intergenic 30.0%
GCCGAAATTAACATAAACAA+CGG + chr6_3:10184969-10184988 None:intergenic 30.0%
!! AACCATTTTTGTGGATCATT+AGG - chr6_3:10185053-10185072 Msa0938430:intron 30.0%
AAACTCAGTTGACAAAATCA+CGG + chr6_3:10185101-10185120 None:intergenic 30.0%
CAAATAAATCTACAGTCTGT+TGG + chr6_3:10185292-10185311 None:intergenic 30.0%
ATTTGTAATGAATGGGAGAT+TGG - chr6_3:10185307-10185326 Msa0938430:CDS 30.0%
!! GGTGTTGCTTAAACAAAATT+AGG - chr6_3:10185507-10185526 Msa0938430:CDS 30.0%
AAGAGTAATCAACGATTACA+TGG - chr6_3:10185691-10185710 Msa0938430:five_prime_UTR 30.0%
GAGGTTGAGATTCTAACAAA+AGG + chr6_3:10183318-10183337 None:intergenic 35.0%
TTGTTAGAATCTCAACCTCA+CGG - chr6_3:10183319-10183338 Msa0938430:three_prime_UTR 35.0%
ATGATTCCATATCCAGTTCA+AGG - chr6_3:10183520-10183539 Msa0938430:exon 35.0%
ATATGACCTTGAACTGGATA+TGG + chr6_3:10183529-10183548 None:intergenic 35.0%
AGGTTATGTGAAATCCTCTA+AGG + chr6_3:10183585-10183604 None:intergenic 35.0%
AAACGTTTGCTCAAATCAAG+AGG - chr6_3:10183628-10183647 Msa0938430:CDS 35.0%
! CTTACTGATTGACAAAGAGT+TGG + chr6_3:10183748-10183767 None:intergenic 35.0%
AAACTAAGCAAGTAACTGGT+GGG + chr6_3:10183831-10183850 None:intergenic 35.0%
TCAGAAACTAAGCAAGTAAC+TGG + chr6_3:10183835-10183854 None:intergenic 35.0%
! AAATCTTAAAACCGGCTCAA+TGG + chr6_3:10184081-10184100 None:intergenic 35.0%
!!! TGAGCCGGTTTTAAGATTTT+TGG - chr6_3:10184082-10184101 Msa0938430:CDS 35.0%
GACGCCAAAAATCTTAAAAC+CGG + chr6_3:10184089-10184108 None:intergenic 35.0%
!!! TTTAAGATTTTTGGCGTCCT+AGG - chr6_3:10184091-10184110 Msa0938430:CDS 35.0%
ACAAAAGTAGATTGGATTCC+AGG - chr6_3:10184626-10184645 Msa0938430:intron 35.0%
!! AACCGAAAGTTTTTCAAACC+TGG + chr6_3:10184647-10184666 None:intergenic 35.0%
! GTTCCTTCTTTTTACCCTAT+CGG - chr6_3:10184824-10184843 Msa0938430:intron 35.0%
GAGTCCAATTGATGAATTTG+TGG + chr6_3:10184878-10184897 None:intergenic 35.0%
ACTCTTTAGATTCCAACCTT+TGG - chr6_3:10184894-10184913 Msa0938430:intron 35.0%
AGTATCTTCTTTCCAAAGGT+TGG + chr6_3:10184909-10184928 None:intergenic 35.0%
ACTCAGTATCTTCTTTCCAA+AGG + chr6_3:10184913-10184932 None:intergenic 35.0%
AAGATACTGAGTGTCTTGAT+TGG - chr6_3:10184921-10184940 Msa0938430:intron 35.0%
TTAACATAAACAACGGATCC+CGG + chr6_3:10184962-10184981 None:intergenic 35.0%
AGCAAATTCCAACATTTGCT+CGG + chr6_3:10185011-10185030 None:intergenic 35.0%
! AGCAAATGTTGGAATTTGCT+TGG - chr6_3:10185011-10185030 Msa0938430:intron 35.0%
! GCAAATGTTGGAATTTGCTT+GGG - chr6_3:10185012-10185031 Msa0938430:intron 35.0%
! CAAATGTTGGAATTTGCTTG+GGG - chr6_3:10185013-10185032 Msa0938430:intron 35.0%
CAAAAATGGTTGCTTGCAAT+TGG + chr6_3:10185044-10185063 None:intergenic 35.0%
!! ATTGCAAGCAACCATTTTTG+TGG - chr6_3:10185044-10185063 Msa0938430:intron 35.0%
! ATTTTTGTGGATCATTAGGC+CGG - chr6_3:10185057-10185076 Msa0938430:CDS 35.0%
ACGAATGAAATTGCAGATAG+AGG - chr6_3:10185121-10185140 Msa0938430:CDS 35.0%
AAAAATGGCCAACACAACAT+CGG + chr6_3:10185259-10185278 None:intergenic 35.0%
TAATGAATGGGAGATTGGTA+TGG - chr6_3:10185312-10185331 Msa0938430:CDS 35.0%
CATCAATTCATTGATCAGCT+TGG + chr6_3:10185371-10185390 None:intergenic 35.0%
CAAGCTGATCAATGAATTGA+TGG - chr6_3:10185369-10185388 Msa0938430:CDS 35.0%
! CTGATCAATGAATTGATGGT+GGG - chr6_3:10185373-10185392 Msa0938430:CDS 35.0%
TGGTTGTTCATACATGAACT+TGG - chr6_3:10185468-10185487 Msa0938430:CDS 35.0%
GAACTTGGACAAAGTGATTA+AGG - chr6_3:10185483-10185502 Msa0938430:CDS 35.0%
AGTGCATCAAAGCATAGTAA+TGG + chr6_3:10185533-10185552 None:intergenic 35.0%
!! TGGGGTTAATGATGGATTAT+TGG - chr6_3:10185588-10185607 Msa0938430:five_prime_UTR 35.0%
CCAAACAGATAAAATCCGTG+AGG + chr6_3:10183337-10183356 None:intergenic 40.0%
! CCTCACGGATTTTATCTGTT+TGG - chr6_3:10183334-10183353 Msa0938430:three_prime_UTR 40.0%
TATGGAATCATCACAGCATG+TGG + chr6_3:10183511-10183530 None:intergenic 40.0%
GGATTGATATGACCTTGAAC+TGG + chr6_3:10183535-10183554 None:intergenic 40.0%
GGAAAACTACTTCACCTTAG+AGG - chr6_3:10183568-10183587 Msa0938430:CDS 40.0%
! GTCAAACCATCTAAGGCATT+TGG + chr6_3:10183655-10183674 None:intergenic 40.0%
GAAACTAAGCAAGTAACTGG+TGG + chr6_3:10183832-10183851 None:intergenic 40.0%
!! AGAGGTGTCATACCATTCAA+AGG - chr6_3:10183973-10183992 Msa0938430:CDS 40.0%
! ATCTGCAGTTTGAGACTACA+AGG - chr6_3:10184414-10184433 Msa0938430:CDS 40.0%
CTACAAGGTCAAACTCTAAC+CGG - chr6_3:10184429-10184448 Msa0938430:CDS 40.0%
!! TCTTGATTGGCTTGAATCCA+AGG - chr6_3:10184934-10184953 Msa0938430:intron 40.0%
GCAAATTCCAACATTTGCTC+GGG + chr6_3:10185010-10185029 None:intergenic 40.0%
GGCCTAATGATCCACAAAAA+TGG + chr6_3:10185058-10185077 None:intergenic 40.0%
ATAGAGGCCTAATAGCAAGT+TGG - chr6_3:10185137-10185156 Msa0938430:CDS 40.0%
TGGTTCAACACTTTCTCTTG+TGG + chr6_3:10185166-10185185 None:intergenic 40.0%
GATTCTTGACTCATTGTGGA+TGG - chr6_3:10185200-10185219 Msa0938430:CDS 40.0%
GTTGGCTGATCAGCAAAAAA+TGG + chr6_3:10185274-10185293 None:intergenic 40.0%
GCTGATCAATGAATTGATGG+TGG - chr6_3:10185372-10185391 Msa0938430:CDS 40.0%
GAGAGAAAGGAAAGATGTTG+AGG - chr6_3:10185395-10185414 Msa0938430:CDS 40.0%
GATGTTGAGGCAAAATGCAA+TGG - chr6_3:10185408-10185427 Msa0938430:CDS 40.0%
TGCAATGGAGTTGAAGAAGA+AGG - chr6_3:10185423-10185442 Msa0938430:CDS 40.0%
TTCATGTATGAACAACCACC+TGG + chr6_3:10185466-10185485 None:intergenic 40.0%
CTTGGACAAAGTGATTAAGG+AGG - chr6_3:10185486-10185505 Msa0938430:CDS 40.0%
AGAGGTCCAAATGCCTTAGA+TGG - chr6_3:10183646-10183665 Msa0938430:CDS 45.0%
!! AGCTTTGAAACCATCCCAGA+TGG - chr6_3:10183682-10183701 Msa0938430:CDS 45.0%
! CTAGTGGTGTTAGACCATCT+GGG + chr6_3:10183699-10183718 None:intergenic 45.0%
CTAACATCACCATCACCTAG+TGG + chr6_3:10183715-10183734 None:intergenic 45.0%
GTGCAAATTCTTCAGCAGCT+TGG + chr6_3:10183879-10183898 None:intergenic 45.0%
ATGAAGGTAAAGGGCCGATA+GGG + chr6_3:10184841-10184860 None:intergenic 45.0%
AATGAAGGTAAAGGGCCGAT+AGG + chr6_3:10184842-10184861 None:intergenic 45.0%
TATGACACCCGAGCAAATGT+TGG - chr6_3:10185000-10185019 Msa0938430:intron 45.0%
! GTTGGAATTTGCTTGGGGTT+TGG - chr6_3:10185018-10185037 Msa0938430:intron 45.0%
!! GTGGACACCAACTTGCTATT+AGG + chr6_3:10185147-10185166 None:intergenic 45.0%
GTGTTGAACCACCCTTCAAT+CGG - chr6_3:10185175-10185194 Msa0938430:CDS 45.0%
! TCAAGAATCCGCCGATTGAA+GGG + chr6_3:10185189-10185208 None:intergenic 45.0%
! ACCATTGAAAGCATATGCGC+TGG - chr6_3:10185229-10185248 Msa0938430:CDS 45.0%
TCCAGCGCATATGCTTTCAA+TGG + chr6_3:10185233-10185252 None:intergenic 45.0%
CGATACGAATGTGAAGAGAG+AGG - chr6_3:10185339-10185358 Msa0938430:CDS 45.0%
GAATGTGAAGAGAGAGGAGT+TGG - chr6_3:10185345-10185364 Msa0938430:CDS 45.0%
!! GAATTGATGGTGGGAGAGAA+AGG - chr6_3:10185382-10185401 Msa0938430:CDS 45.0%
!! ATATATATATATAATATAGA+GGG + chr6_3:10184240-10184259 None:intergenic 5.0%
!! TATATATATATATAATATAG+AGG + chr6_3:10184241-10184260 None:intergenic 5.0%
!!! CTAAATTTTAAAAAATAAAA+TGG + chr6_3:10184336-10184355 None:intergenic 5.0%
!!! CATTTTATTTTTTAAAATTT+AGG - chr6_3:10184334-10184353 Msa0938430:CDS 5.0%
! TGGTGTTAGACCATCTGGGA+TGG + chr6_3:10183695-10183714 None:intergenic 50.0%
! CCTAGTGGTGTTAGACCATC+TGG + chr6_3:10183700-10183719 None:intergenic 50.0%
CCAGATGGTCTAACACCACT+AGG - chr6_3:10183697-10183716 Msa0938430:CDS 50.0%
GGTCTAACACCACTAGGTGA+TGG - chr6_3:10183703-10183722 Msa0938430:CDS 50.0%
GCAAGTAACTGGTGGGACAT+TGG + chr6_3:10183824-10183843 None:intergenic 50.0%
GGGCCGATAGGGTAAAAAGA+AGG + chr6_3:10184830-10184849 None:intergenic 50.0%
! TTGGCTTGAATCCAAGGAGC+CGG - chr6_3:10184940-10184959 Msa0938430:intron 50.0%
ATTAGGCCGGACCTTGTCAT+TGG - chr6_3:10185070-10185089 Msa0938430:CDS 50.0%
TTGAACCACCCTTCAATCGG+CGG - chr6_3:10185178-10185197 Msa0938430:CDS 50.0%
! GTCAAGAATCCGCCGATTGA+AGG + chr6_3:10185190-10185209 None:intergenic 50.0%
! GGCGGATTCTTGACTCATTG+TGG - chr6_3:10185196-10185215 Msa0938430:CDS 50.0%
! GGAGTTGAAGAAGAAGGCAC+AGG - chr6_3:10185429-10185448 Msa0938430:CDS 50.0%
GCACAGGAGAACACTATACC+AGG - chr6_3:10185445-10185464 Msa0938430:CDS 50.0%
CAGGAGAACACTATACCAGG+TGG - chr6_3:10185448-10185467 Msa0938430:CDS 50.0%
TGGCTTGAATCCAAGGAGCC+GGG - chr6_3:10184941-10184960 Msa0938430:intron 55.0%
GAGCCACCAATGACAAGGTC+CGG + chr6_3:10185079-10185098 None:intergenic 55.0%
TCACGGAGCCACCAATGACA+AGG + chr6_3:10185084-10185103 None:intergenic 55.0%
! AGAATCCGCCGATTGAAGGG+TGG + chr6_3:10185186-10185205 None:intergenic 55.0%
!! CTGGAGTGCCGATGTTGTGT+TGG - chr6_3:10185248-10185267 Msa0938430:CDS 55.0%
AACAACGGATCCCGGCTCCT+TGG + chr6_3:10184954-10184973 None:intergenic 60.0%
AGGCCGGACCTTGTCATTGG+TGG - chr6_3:10185073-10185092 Msa0938430:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 10183262 10185789 10183262 ID=Msa0938430;Name=Msa0938430
chr6_3 mRNA 10183262 10185789 10183262 ID=Msa0938430-mRNA-1;Parent=Msa0938430;Name=Msa0938430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=222|1|1|1|0.5|0.33|3|202|481
chr6_3 exon 10183262 10183357 10183262 ID=Msa0938430-mRNA-1:exon:3197;Parent=Msa0938430-mRNA-1
chr6_3 exon 10183417 10184457 10183417 ID=Msa0938430-mRNA-1:exon:3196;Parent=Msa0938430-mRNA-1
chr6_3 exon 10185057 10185789 10185057 ID=Msa0938430-mRNA-1:exon:3195;Parent=Msa0938430-mRNA-1
chr6_3 five_prime_UTR 10185568 10185789 10185568 ID=Msa0938430-mRNA-1:five_prime_utr;Parent=Msa0938430-mRNA-1
chr6_3 CDS 10185057 10185567 10185057 ID=Msa0938430-mRNA-1:cds;Parent=Msa0938430-mRNA-1
chr6_3 CDS 10183523 10184457 10183523 ID=Msa0938430-mRNA-1:cds;Parent=Msa0938430-mRNA-1
chr6_3 three_prime_UTR 10183417 10183522 10183417 ID=Msa0938430-mRNA-1:three_prime_utr;Parent=Msa0938430-mRNA-1
chr6_3 three_prime_UTR 10183262 10183357 10183262 ID=Msa0938430-mRNA-1:three_prime_utr;Parent=Msa0938430-mRNA-1
Gene Sequence

>Msa0938430

ATGGGAAACTTTGCAAACAGAAAACCACATGCTGTGATGATTCCATATCCAGTTCAAGGTCATATCAATCCAATGTTGAAACTAGGAAAACTACTTCACCTTAGAGGATTTCACATAACCTTTGTCAACACTGAATACAATCACAAACGTTTGCTCAAATCAAGAGGTCCAAATGCCTTAGATGGTTTGACTGATTTTAGCTTTGAAACCATCCCAGATGGTCTAACACCACTAGGTGATGGTGATGTTAGTCAAGATGTACCAACTCTTTGTCAATCAGTAAGAAAGAATTTCCTTAAACCCTATTGTGAACTTATTACTAGGCTTAATCACTCTGCCAATGTCCCACCAGTTACTTGCTTAGTTTCTGATTGTTGTATGAGCTTTACTATCCAAGCTGCTGAAGAATTTGCACTCCCAAATGTTCTCTATTTTTCATCTAGTGCATGTTCTTTATTGAATGTGATGTACTTTCGATCTTTTGTAGAAAGAGGTGTCATACCATTCAAAGATGAGAGTTATCTTACAAATGGATGTTTGGAAACAAAAGTAGATTGGATTCCAGGTTTGAAAAACTTTCGGTTGAAAGACATTGTTGACTTTATCAGGACAACAAATCCAAATGATATTATGTTGAATTTCTTTATTGAAATTGCAGATAGAGTTAATAGTGACTCTACTATTCTTTTGAATACTTTCAATGAACTTGAGAGTGATGTAATAAATGCTCTCTCCTCTATAGTTCCTTCTTTTTACCCTATCGGCCCTTTACCTTCATTATTAAACCAAAATCCACAAATTCATCAATTGGACTCTTTAGATTCCAACCTTTGGAAAGAAGATACTGAGTGTCTTGATTGGCTTGAATCCAAGGAGCCGGGATCCGTTGTTTATGTTAATTTCGGCAGCATTACAGTTATGACACCCGAGCAAATGTTGGAATTTGCTTGGGGTTTGGCCAATTGCAAGCAACCATTTTTGTGGATCATTAGGCCGGACCTTGTCATTGGTGGCTCCGTGATTTTGTCAACTGAGTTTACGAATGAAATTGCAGATAGAGGCCTAATAGCAAGTTGGTGTCCACAAGAGAAAGTGTTGAACCACCCTTCAATCGGCGGATTCTTGACTCATTGTGGATGGAATTCAACCATTGAAAGCATATGCGCTGGAGTGCCGATGTTGTGTTGGCCATTTTTTGCTGATCAGCCAACAGACTGTAGATTTATTTGTAATGAATGGGAGATTGGTATGGAAATCGATACGAATGTGAAGAGAGAGGAGTTGGCCAAGCTGATCAATGAATTGATGGTGGGAGAGAAAGGAAAGATGTTGAGGCAAAATGCAATGGAGTTGAAGAAGAAGGCACAGGAGAACACTATACCAGGTGGTTGTTCATACATGAACTTGGACAAAGTGATTAAGGAGGTGTTGCTTAAACAAAATTAG

Protein sequence

>Msa0938430

MGNFANRKPHAVMIPYPVQGHINPMLKLGKLLHLRGFHITFVNTEYNHKRLLKSRGPNALDGLTDFSFETIPDGLTPLGDGDVSQDVPTLCQSVRKNFLKPYCELITRLNHSANVPPVTCLVSDCCMSFTIQAAEEFALPNVLYFSSSACSLLNVMYFRSFVERGVIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLNFFIEIADRVNSDSTILLNTFNELESDVINALSSIVPSFYPIGPLPSLLNQNPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSITVMTPEQMLEFAWGLANCKQPFLWIIRPDLVIGGSVILSTEFTNEIADRGLIASWCPQEKVLNHPSIGGFLTHCGWNSTIESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINELMVGEKGKMLRQNAMELKKKAQENTIPGGCSYMNLDKVIKEVLLKQN*