AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045030 MtrunA17_Chr1g0212021 90.981 377 28 1 22 398 1 371 0.0 708
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045030 AT5G08340.1 61.000 300 113 3 95 394 72 367 2.38e-125 367
Msa0045030 AT5G23330.1 61.204 299 113 3 97 394 58 354 2.11e-123 361
Msa0045030 AT5G08340.2 64.158 279 96 3 95 373 72 346 2.89e-123 360

Find 93 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATATGTCTCGGAGCTTT+TGG 0.209633 1_1:+76710062 Msa0045030:CDS
TAGCACCGAAACAAGGTTTA+AGG 0.230397 1_1:-76707300 None:intergenic
AACTCAATCTCAAACTCTTC+TGG 0.231381 1_1:-76709600 None:intergenic
CATAATGCATCAAGGGAAAA+AGG 0.232094 1_1:-76710487 None:intergenic
CAGTACTTGCATATTGAATT+TGG 0.253783 1_1:+76710330 Msa0045030:CDS
AGATTCAATAAGCATGATTT+AGG 0.264654 1_1:-76710159 None:intergenic
TGCTATTCTTCCAAGTCTTC+TGG 0.269569 1_1:+76707379 Msa0045030:CDS
CGAGACCTGGCCCCTCTCTT+TGG 0.273632 1_1:-76710001 None:intergenic
CGCCGTAATCTGTTTCTATA+TGG 0.280483 1_1:-76710275 None:intergenic
TCGATCACATTTAGCGACTA+TGG 0.286199 1_1:-76709532 None:intergenic
GTTGGCATGGCTAAGGTATT+TGG 0.295852 1_1:+76708330 Msa0045030:CDS
ATTCAGATTTAGCCAGTATA+AGG 0.305630 1_1:+76710128 Msa0045030:CDS
ACAACATCGTCTTGTATTAA+TGG 0.318588 1_1:+76710089 Msa0045030:CDS
AAGAATAGCATTTGTTTGAT+TGG 0.327967 1_1:-76707366 None:intergenic
TTTCATGATCATCTTCTTGT+TGG 0.344316 1_1:-76707748 None:intergenic
CCTCTCTTTGGAGCCAGTAC+TGG 0.378348 1_1:-76709989 None:intergenic
AAGAAAATGTTATGCTATGT+AGG 0.384809 1_1:+76710229 Msa0045030:CDS
AAAGCGCGTTCTTTCATCTT+GGG 0.389450 1_1:+76709554 Msa0045030:CDS
AGAGTGCGTGGAGTTGTTGC+AGG 0.403620 1_1:+76709681 Msa0045030:CDS
TTCTCATATAAACCTTCCTT+TGG 0.405100 1_1:-76710186 None:intergenic
CCAACAAATGATAAAAGAAA+TGG 0.405504 1_1:-76708312 None:intergenic
ACTCAATCTCAAACTCTTCT+GGG 0.406701 1_1:-76709599 None:intergenic
TAGGAGCAGACACCTTATAC+TGG 0.407488 1_1:-76710140 None:intergenic
GGGAGCATGTTACCACAATA+AGG 0.409917 1_1:-76709579 None:intergenic
CATGGCTAAGGTATTTGGTT+GGG 0.420470 1_1:+76708335 Msa0045030:CDS
TTACATAATAAAATCTGTTA+TGG 0.427036 1_1:+76709936 Msa0045030:CDS
AATTTATATTTGTTGAGTAT+TGG 0.428731 1_1:-76709966 None:intergenic
GCAGGTGAGAACTACCGATT+TGG 0.429036 1_1:+76709850 Msa0045030:intron
AGCACCGAAACAAGGTTTAA+GGG 0.440737 1_1:-76707299 None:intergenic
GAACTTCTTCACTTTGGTGT+TGG 0.442787 1_1:+76707238 Msa0045030:CDS
GAAAGCGCGTTCTTTCATCT+TGG 0.448349 1_1:+76709553 Msa0045030:CDS
CCAGGTGGAATTGTAGCGTT+GGG 0.455534 1_1:+76708225 Msa0045030:intron
TCATCTTGGGTTCCTTATTG+TGG 0.457058 1_1:+76709567 Msa0045030:CDS
GTCCATATAGAAACAGATTA+CGG 0.460529 1_1:+76710273 Msa0045030:CDS
CGATCACATTTAGCGACTAT+GGG 0.461216 1_1:-76709531 None:intergenic
ATCATTTGTTGGCATGGCTA+AGG 0.464451 1_1:+76708323 Msa0045030:CDS
GCTATGTGAGGAGTATGAAA+TGG 0.466573 1_1:+76709909 Msa0045030:CDS
AGGTATTTGGTTGGGAACAT+AGG 0.468357 1_1:+76708343 Msa0045030:CDS
CTCCTACAGCAAGCGCTTCG+CGG 0.471188 1_1:-76710035 None:intergenic
CAGCAAGCGCTTCGCGGACA+CGG 0.472253 1_1:-76710029 None:intergenic
GAGAAGTGTTCACTGTTACT+TGG 0.476809 1_1:+76710204 Msa0045030:CDS
TCCTCCTCCTCCAGAAGACT+TGG 0.478454 1_1:-76707389 None:intergenic
ACAAATATAAATTCCAGTAC+TGG 0.481740 1_1:+76709976 Msa0045030:CDS
TACAGATGATTCTTATGTCC+CGG 0.486653 1_1:+76710414 Msa0045030:three_prime_UTR
CAGCTGCTTTATATCCAAAT+CGG 0.493817 1_1:-76709864 None:intergenic
TCCAAGTCTTCTGGAGGAGG+AGG 0.499467 1_1:+76707388 Msa0045030:CDS
GCCAGGTGGAATTGTAGCGT+TGG 0.502010 1_1:+76708224 Msa0045030:intron
AACTTGCAATTCAAGCATCA+AGG 0.520418 1_1:+76708280 Msa0045030:CDS
TAGCAGCTTAAACGAGGAAG+TGG 0.520468 1_1:+76707129 Msa0045030:intron
GACTGTGAACTTCTTCACTT+TGG 0.524178 1_1:+76707232 Msa0045030:CDS
GCATGGCTAAGGTATTTGGT+TGG 0.524252 1_1:+76708334 Msa0045030:CDS
TCTTCCAAGTCTTCTGGAGG+AGG 0.524835 1_1:+76707385 Msa0045030:CDS
ACCTGAAAGAAGAATCGAAA+AGG 0.525787 1_1:-76707423 None:intergenic
CGATTTGGATATAAAGCAGC+TGG 0.526419 1_1:+76709865 Msa0045030:CDS
GACGGAATATCTGCAGTGGC+AGG 0.537676 1_1:+76707779 Msa0045030:CDS
AGAAAATGTTATGCTATGTA+GGG 0.539473 1_1:+76710230 Msa0045030:CDS
CTTATTGAATCTAGCACCAA+AGG 0.542329 1_1:+76710170 Msa0045030:CDS
AAGTTTGATGCTCTTCACAT+AGG 0.555202 1_1:+76708249 Msa0045030:CDS
AGCAAGCGCTTCGCGGACAC+GGG 0.560481 1_1:-76710028 None:intergenic
GCAATTCAAGCATCAAGGGC+TGG 0.566180 1_1:+76708285 Msa0045030:CDS
CAGTACTGGCTCCAAAGAGA+GGG 0.575024 1_1:+76709990 Msa0045030:CDS
GAAAGAAGAATCGAAAAGGA+GGG 0.578243 1_1:-76707419 None:intergenic
TGGCTCCAAAGAGAGGGGCC+AGG 0.581057 1_1:+76709996 Msa0045030:CDS
TTGAATCTAGCACCAAAGGA+AGG 0.582942 1_1:+76710174 Msa0045030:CDS
TTTGAGGGCATAATGCATCA+AGG 0.583449 1_1:-76710495 None:intergenic
GTCCGCGAAGCGCTTGCTGT+AGG 0.588806 1_1:+76710033 Msa0045030:CDS
GCACCGAAACAAGGTTTAAG+GGG 0.592031 1_1:-76707298 None:intergenic
GGACACGGGTTGACGAGACC+TGG 0.592925 1_1:-76710014 None:intergenic
TCAAAAGAGCTTAGAGTGCG+TGG 0.596134 1_1:+76709669 Msa0045030:CDS
TGAAAGAAGAATCGAAAAGG+AGG 0.596345 1_1:-76707420 None:intergenic
ACTTGCAATTCAAGCATCAA+GGG 0.598932 1_1:+76708281 Msa0045030:CDS
CCAGTACTGGCTCCAAAGAG+AGG 0.599060 1_1:+76709989 Msa0045030:CDS
ATGCTATTAGCACCGAAACA+AGG 0.599957 1_1:-76707307 None:intergenic
ACAAATGATAAAAGAAATGG+AGG 0.605894 1_1:-76708309 None:intergenic
AAAGAAGAATCGAAAAGGAG+GGG 0.608086 1_1:-76707418 None:intergenic
TCGGTTAGTACAAGTAGTAA+CGG 0.610624 1_1:-76707332 None:intergenic
TTGAGGGCATAATGCATCAA+GGG 0.610688 1_1:-76710494 None:intergenic
TCTGAATGTTTCTCGATCAG+TGG 0.620902 1_1:-76710112 None:intergenic
GATCATGAAATTGTCTCCGA+CGG 0.635934 1_1:+76707761 Msa0045030:CDS
AACTTCTCAACAAATTGTCG+CGG 0.636369 1_1:-76709645 None:intergenic
TGCCACTGCAGATATTCCGT+CGG 0.639844 1_1:-76707777 None:intergenic
TTAAACGAGGAAGTGGAAAG+TGG 0.642278 1_1:+76707136 Msa0045030:CDS
CACCGAAACAAGGTTTAAGG+GGG 0.642539 1_1:-76707297 None:intergenic
AGGAGACGTGAAATATGTCT+CGG 0.644336 1_1:+76710053 Msa0045030:CDS
TAGAAGATTTGATGATGCGG+AGG 0.645347 1_1:+76707159 Msa0045030:CDS
TGGTAGAAGATTTGATGATG+CGG 0.645810 1_1:+76707156 Msa0045030:CDS
TATTCTTCCAAGTCTTCTGG+AGG 0.648615 1_1:+76707382 Msa0045030:CDS
CTCCGACGGAATATCTGCAG+TGG 0.651596 1_1:+76707775 Msa0045030:CDS
AGAGTTAGAACAGCTATGTG+AGG 0.658219 1_1:+76709897 Msa0045030:CDS
TTCCTGTAGCAGCTTAAACG+AGG 0.686170 1_1:+76707123 Msa0045030:intron
TGATGCGGAGGAATTTGCAA+TGG 0.693518 1_1:+76707171 Msa0045030:CDS
AGTACTGGCTCCAAAGAGAG+GGG 0.695442 1_1:+76709991 Msa0045030:CDS
CATATAGAAACAGATTACGG+CGG 0.701565 1_1:+76710276 Msa0045030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACATTTTATTTTAAAACA+TGG - chr1_1:76707523-76707542 None:intergenic 10.0%
!! TTATATATTCAATTATTGAA+AGG + chr1_1:76708672-76708691 Msa0045030:intron 10.0%
!!! TATTTTATCAACTATAAAAT+AGG - chr1_1:76709394-76709413 None:intergenic 10.0%
!! ATAAGAAAAAAGAAAAGAAA+AGG - chr1_1:76707461-76707480 None:intergenic 15.0%
!! AACTTATTTCAATTGTTATA+CGG - chr1_1:76708591-76708610 None:intergenic 15.0%
!! GACAAAATTAGAATAAATTA+AGG - chr1_1:76709720-76709739 None:intergenic 15.0%
!! TTACATAATAAAATCTGTTA+TGG + chr1_1:76709936-76709955 Msa0045030:CDS 15.0%
!!! AATTTATATTTGTTGAGTAT+TGG - chr1_1:76709969-76709988 None:intergenic 15.0%
!! GAATCAGGATAATAATATTT+CGG - chr1_1:76707106-76707125 None:intergenic 20.0%
!! AAAAATGCACAAAAAGTTTA+GGG - chr1_1:76707990-76708009 None:intergenic 20.0%
!! AAAAAATGCACAAAAAGTTT+AGG - chr1_1:76707991-76708010 None:intergenic 20.0%
!! TACACACATACATATTATAA+TGG + chr1_1:76708455-76708474 Msa0045030:intron 20.0%
!!! AATTTCATATAACGGATTTT+TGG - chr1_1:76708561-76708580 None:intergenic 20.0%
!! ATGCTGCATATAAATAAAAA+AGG + chr1_1:76708629-76708648 Msa0045030:intron 20.0%
!! TGCTGCATATAAATAAAAAA+GGG + chr1_1:76708630-76708649 Msa0045030:intron 20.0%
!! CATATAAATAAAAAAGGGAT+TGG + chr1_1:76708635-76708654 Msa0045030:intron 20.0%
!! TGAAAGGTTTACATATATAT+AGG + chr1_1:76708688-76708707 Msa0045030:intron 20.0%
!!! AGCTTTTCTATTATATAACT+AGG + chr1_1:76708733-76708752 Msa0045030:intron 20.0%
!! ATTGTAATAATAGCAAAACT+AGG + chr1_1:76708874-76708893 Msa0045030:intron 20.0%
!!! TGTATTTAAAATCCACTTTA+AGG + chr1_1:76709264-76709283 Msa0045030:intron 20.0%
!!! ATAGTTGATAAAATAACGTT+TGG + chr1_1:76709399-76709418 Msa0045030:intron 20.0%
!!! AACTCATTTTCTTATTATCT+TGG + chr1_1:76709463-76709482 Msa0045030:intron 20.0%
!! ACATATTATGATTATGTGAA+CGG - chr1_1:76709757-76709776 None:intergenic 20.0%
!! TTCACATAATCATAATATGT+TGG + chr1_1:76709757-76709776 Msa0045030:intron 20.0%
! GGATAATAATATTTCGGATT+CGG - chr1_1:76707100-76707119 None:intergenic 25.0%
! AAGAATAGCATTTGTTTGAT+TGG - chr1_1:76707369-76707388 None:intergenic 25.0%
! TCATGAGTTCTATCAATAAT+TGG + chr1_1:76707570-76707589 Msa0045030:intron 25.0%
! TAAGAAACAATATCAATGAG+TGG - chr1_1:76707633-76707652 None:intergenic 25.0%
!!! CTTAACGATTTTTAATTGTG+TGG + chr1_1:76707649-76707668 Msa0045030:intron 25.0%
! AAAAATAACCCAATTGAACA+TGG - chr1_1:76707835-76707854 None:intergenic 25.0%
!! TTAGAATATCCCATTTTGTT+CGG + chr1_1:76707859-76707878 Msa0045030:intron 25.0%
! TACACAAAAACACATGTAAA+TGG + chr1_1:76708127-76708146 Msa0045030:intron 25.0%
! ACAAATGATAAAAGAAATGG+AGG - chr1_1:76708312-76708331 None:intergenic 25.0%
! CCAACAAATGATAAAAGAAA+TGG - chr1_1:76708315-76708334 None:intergenic 25.0%
!! CCATTTCTTTTATCATTTGT+TGG + chr1_1:76708312-76708331 Msa0045030:CDS 25.0%
!! GCTTTTGCAATTTCATATAA+CGG - chr1_1:76708569-76708588 None:intergenic 25.0%
! ATAAATAAAAAAGGGATTGG+AGG + chr1_1:76708638-76708657 Msa0045030:intron 25.0%
! TTATATAACTAGGTCATGTT+TGG + chr1_1:76708743-76708762 Msa0045030:intron 25.0%
! AATAAATGAAGGGTTACTAA+CGG - chr1_1:76708968-76708987 None:intergenic 25.0%
!!! AAGATTTACTTTTCTCTTCA+TGG + chr1_1:76709121-76709140 Msa0045030:intron 25.0%
! ATTTAGTGACAAGTATCAAA+TGG - chr1_1:76709173-76709192 None:intergenic 25.0%
! TCGAATACTTGTAATCATAA+TGG - chr1_1:76709294-76709313 None:intergenic 25.0%
! TCAACTATAAAATAGGCAAA+TGG - chr1_1:76709387-76709406 None:intergenic 25.0%
!! TCATTTTCTTATTATCTTGG+AGG + chr1_1:76709466-76709485 Msa0045030:intron 25.0%
!! CATTTTCTTATTATCTTGGA+GGG + chr1_1:76709467-76709486 Msa0045030:intron 25.0%
! GATAAATGGAAAATGGAAAA+TGG - chr1_1:76709790-76709809 None:intergenic 25.0%
! TATCTATTTCCATTTACATG+AGG - chr1_1:76709812-76709831 None:intergenic 25.0%
! ACAAATATAAATTCCAGTAC+TGG + chr1_1:76709976-76709995 Msa0045030:CDS 25.0%
! AGATTCAATAAGCATGATTT+AGG - chr1_1:76710162-76710181 None:intergenic 25.0%
! AAGAAAATGTTATGCTATGT+AGG + chr1_1:76710229-76710248 Msa0045030:CDS 25.0%
! AGAAAATGTTATGCTATGTA+GGG + chr1_1:76710230-76710249 Msa0045030:CDS 25.0%
!! TAAGACTTAGAATTTTCATC+CGG - chr1_1:76710436-76710455 None:intergenic 25.0%
TAATAATATTTCGGATTCGG+TGG - chr1_1:76707097-76707116 None:intergenic 30.0%
! ATCGTATTTCGCATCATTTT+CGG + chr1_1:76707209-76707228 Msa0045030:CDS 30.0%
!!! TTGATTGGAGTGTTTTGTTT+CGG - chr1_1:76707354-76707373 None:intergenic 30.0%
TTTCATGATCATCTTCTTGT+TGG - chr1_1:76707751-76707770 None:intergenic 30.0%
! ATTGCTCAACTGATTCTTAT+AGG + chr1_1:76707904-76707923 Msa0045030:intron 30.0%
CACTAAGCTATAACTTCAAA+GGG - chr1_1:76707957-76707976 None:intergenic 30.0%
ACACTAAGCTATAACTTCAA+AGG - chr1_1:76707958-76707977 None:intergenic 30.0%
!!! TTTTTTGTTTCTCTCCCTTT+TGG + chr1_1:76708006-76708025 Msa0045030:intron 30.0%
TTGAGCATAAAAAGCCAAAA+GGG - chr1_1:76708023-76708042 None:intergenic 30.0%
ATTGAGCATAAAAAGCCAAA+AGG - chr1_1:76708024-76708043 None:intergenic 30.0%
! TGTAAATGGAGTTTTCACTT+TGG + chr1_1:76708141-76708160 Msa0045030:intron 30.0%
!! TCTTTTATCATTTGTTGGCA+TGG + chr1_1:76708317-76708336 Msa0045030:CDS 30.0%
CTTGTATCAAGCTCATTAAA+TGG + chr1_1:76708382-76708401 Msa0045030:intron 30.0%
!!! ATACTGTTTTTTTACATCGC+TGG + chr1_1:76708411-76708430 Msa0045030:intron 30.0%
GCAAACTACTGTTATAACAT+TGG - chr1_1:76708522-76708541 None:intergenic 30.0%
!!! ATAACGGATTTTTGGCATTA+TGG - chr1_1:76708553-76708572 None:intergenic 30.0%
GCGGAAAAAAGAGAATTTAT+AGG - chr1_1:76708807-76708826 None:intergenic 30.0%
CAAGTAGGGTAATAAATGAA+GGG - chr1_1:76708978-76708997 None:intergenic 30.0%
TACCATAGATTATCCAAGTA+GGG - chr1_1:76708992-76709011 None:intergenic 30.0%
!! AGAATTTGTTGTTGTTGTGA+TGG - chr1_1:76709062-76709081 None:intergenic 30.0%
TACTTGTCACTAAATGTCAT+TGG + chr1_1:76709178-76709197 Msa0045030:intron 30.0%
ACTTGTCACTAAATGTCATT+GGG + chr1_1:76709179-76709198 Msa0045030:intron 30.0%
AAAAACGATGACTAAACTTC+TGG - chr1_1:76709326-76709345 None:intergenic 30.0%
! AGAAGTTTAGTCATCGTTTT+TGG + chr1_1:76709325-76709344 Msa0045030:intron 30.0%
!! GAAGTTTAGTCATCGTTTTT+GGG + chr1_1:76709326-76709345 Msa0045030:intron 30.0%
ACATGAGGATAAATGGAAAA+TGG - chr1_1:76709797-76709816 None:intergenic 30.0%
TCCATTTATCCTCATGTAAA+TGG + chr1_1:76709800-76709819 Msa0045030:intron 30.0%
TCCATTTACATGAGGATAAA+TGG - chr1_1:76709804-76709823 None:intergenic 30.0%
ATGGAAATAGATATCTGTAC+TGG + chr1_1:76709819-76709838 Msa0045030:intron 30.0%
ACAACATCGTCTTGTATTAA+TGG + chr1_1:76710089-76710108 Msa0045030:CDS 30.0%
ATTCAGATTTAGCCAGTATA+AGG + chr1_1:76710128-76710147 Msa0045030:CDS 30.0%
TTCTCATATAAACCTTCCTT+TGG - chr1_1:76710189-76710208 None:intergenic 30.0%
GTCCATATAGAAACAGATTA+CGG + chr1_1:76710273-76710292 Msa0045030:CDS 30.0%
CAGTACTTGCATATTGAATT+TGG + chr1_1:76710330-76710349 Msa0045030:CDS 30.0%
! AAGACTTAGAATTTTCATCC+GGG - chr1_1:76710435-76710454 None:intergenic 30.0%
ATAATGCATCAAGGGAAAAA+GGG - chr1_1:76710489-76710508 None:intergenic 30.0%
AGAAATGAAGTCGGGTTATT+TGG + chr1_1:76707058-76707077 Msa0045030:intron 35.0%
!! TGGTAGAAGATTTGATGATG+CGG + chr1_1:76707156-76707175 Msa0045030:CDS 35.0%
! TCGTATTTCGCATCATTTTC+GGG + chr1_1:76707210-76707229 Msa0045030:CDS 35.0%
TCGGTTAGTACAAGTAGTAA+CGG - chr1_1:76707335-76707354 None:intergenic 35.0%
AAAGAAGAATCGAAAAGGAG+GGG - chr1_1:76707421-76707440 None:intergenic 35.0%
GAAAGAAGAATCGAAAAGGA+GGG - chr1_1:76707422-76707441 None:intergenic 35.0%
TGAAAGAAGAATCGAAAAGG+AGG - chr1_1:76707423-76707442 None:intergenic 35.0%
! TCCTTTTCGATTCTTCTTTC+AGG + chr1_1:76707422-76707441 Msa0045030:CDS 35.0%
ACCTGAAAGAAGAATCGAAA+AGG - chr1_1:76707426-76707445 None:intergenic 35.0%
!! TTATTTTTCCGATGTGCTCT+GGG + chr1_1:76707477-76707496 Msa0045030:intron 35.0%
TTACCGTTTCCATGTTCAAT+TGG + chr1_1:76707823-76707842 Msa0045030:intron 35.0%
TACCGTTTCCATGTTCAATT+GGG + chr1_1:76707824-76707843 Msa0045030:intron 35.0%
AACCCAATTGAACATGGAAA+CGG - chr1_1:76707829-76707848 None:intergenic 35.0%
! AATATCCCATTTTGTTCGGA+GGG + chr1_1:76707863-76707882 Msa0045030:intron 35.0%
GGAGGGAAATGTAATTGTAA+TGG + chr1_1:76707880-76707899 Msa0045030:intron 35.0%
! CAACTGATTCTTATAGGATG+AGG + chr1_1:76707910-76707929 Msa0045030:intron 35.0%
AAAGGGAAAAGAATTTGCAC+GGG - chr1_1:76707940-76707959 None:intergenic 35.0%
CAAAGGGAAAAGAATTTGCA+CGG - chr1_1:76707941-76707960 None:intergenic 35.0%
ACTAGTATCCCTTACTTATG+TGG + chr1_1:76708091-76708110 Msa0045030:intron 35.0%
ATCCCTTACTTATGTGGTAT+AGG + chr1_1:76708097-76708116 Msa0045030:intron 35.0%
TCCCTTACTTATGTGGTATA+GGG + chr1_1:76708098-76708117 Msa0045030:intron 35.0%
TCCCTATACCACATAAGTAA+GGG - chr1_1:76708102-76708121 None:intergenic 35.0%
TTCCCTATACCACATAAGTA+AGG - chr1_1:76708103-76708122 None:intergenic 35.0%
CTATCTATCATGATATTGCC+AGG + chr1_1:76708207-76708226 Msa0045030:intron 35.0%
AAGTTTGATGCTCTTCACAT+AGG + chr1_1:76708249-76708268 Msa0045030:CDS 35.0%
AACTTGCAATTCAAGCATCA+AGG + chr1_1:76708280-76708299 Msa0045030:CDS 35.0%
ACTTGCAATTCAAGCATCAA+GGG + chr1_1:76708281-76708300 Msa0045030:CDS 35.0%
ACATCGCTGGAAAATATGTT+TGG + chr1_1:76708424-76708443 Msa0045030:intron 35.0%
GTGACTCTTTCTTTGCAATA+CGG + chr1_1:76708481-76708500 Msa0045030:intron 35.0%
TGACTCTTTCTTTGCAATAC+GGG + chr1_1:76708482-76708501 Msa0045030:intron 35.0%
CCAAGTAGGGTAATAAATGA+AGG - chr1_1:76708979-76708998 None:intergenic 35.0%
CCTTCATTTATTACCCTACT+TGG + chr1_1:76708976-76708995 Msa0045030:intron 35.0%
TACCCTACTTGGATAATCTA+TGG + chr1_1:76708987-76709006 Msa0045030:intron 35.0%
CTACCATAGATTATCCAAGT+AGG - chr1_1:76708993-76709012 None:intergenic 35.0%
CATAATGGTCTTCCTTAAAG+TGG - chr1_1:76709279-76709298 None:intergenic 35.0%
ACTCAATCTCAAACTCTTCT+GGG - chr1_1:76709602-76709621 None:intergenic 35.0%
AACTCAATCTCAAACTCTTC+TGG - chr1_1:76709603-76709622 None:intergenic 35.0%
AACTTCTCAACAAATTGTCG+CGG - chr1_1:76709648-76709667 None:intergenic 35.0%
! CAGCTGCTTTATATCCAAAT+CGG - chr1_1:76709867-76709886 None:intergenic 35.0%
! AAATATGTCTCGGAGCTTTT+GGG + chr1_1:76710063-76710082 Msa0045030:CDS 35.0%
CTTATTGAATCTAGCACCAA+AGG + chr1_1:76710170-76710189 Msa0045030:CDS 35.0%
CATATAGAAACAGATTACGG+CGG + chr1_1:76710276-76710295 Msa0045030:CDS 35.0%
TACAGATGATTCTTATGTCC+CGG + chr1_1:76710414-76710433 Msa0045030:three_prime_UTR 35.0%
CATAATGCATCAAGGGAAAA+AGG - chr1_1:76710490-76710509 None:intergenic 35.0%
GAGTGAGTGAGAAATGAAGT+CGG + chr1_1:76707049-76707068 Msa0045030:intron 40.0%
AGTGAGTGAGAAATGAAGTC+GGG + chr1_1:76707050-76707069 Msa0045030:intron 40.0%
!! ATATTTCGGATTCGGTGGAT+GGG - chr1_1:76707092-76707111 None:intergenic 40.0%
!! AATATTTCGGATTCGGTGGA+TGG - chr1_1:76707093-76707112 None:intergenic 40.0%
TTTAAGCTGCTACAGGAATC+AGG - chr1_1:76707121-76707140 None:intergenic 40.0%
TTAAACGAGGAAGTGGAAAG+TGG + chr1_1:76707136-76707155 Msa0045030:CDS 40.0%
!! TAGAAGATTTGATGATGCGG+AGG + chr1_1:76707159-76707178 Msa0045030:CDS 40.0%
GACTGTGAACTTCTTCACTT+TGG + chr1_1:76707232-76707251 Msa0045030:CDS 40.0%
! GAACTTCTTCACTTTGGTGT+TGG + chr1_1:76707238-76707257 Msa0045030:CDS 40.0%
! AGCACCGAAACAAGGTTTAA+GGG - chr1_1:76707302-76707321 None:intergenic 40.0%
! TAGCACCGAAACAAGGTTTA+AGG - chr1_1:76707303-76707322 None:intergenic 40.0%
! ATGCTATTAGCACCGAAACA+AGG - chr1_1:76707310-76707329 None:intergenic 40.0%
TGCTATTCTTCCAAGTCTTC+TGG + chr1_1:76707379-76707398 Msa0045030:CDS 40.0%
TATTCTTCCAAGTCTTCTGG+AGG + chr1_1:76707382-76707401 Msa0045030:CDS 40.0%
!! CTTATTTTTCCGATGTGCTC+TGG + chr1_1:76707476-76707495 Msa0045030:intron 40.0%
CAGTGTATGAGAGTCTTAGT+AGG - chr1_1:76707703-76707722 None:intergenic 40.0%
GATCATGAAATTGTCTCCGA+CGG + chr1_1:76707761-76707780 Msa0045030:CDS 40.0%
! GAATATCCCATTTTGTTCGG+AGG + chr1_1:76707862-76707881 Msa0045030:intron 40.0%
CATTTCCCTCCGAACAAAAT+GGG - chr1_1:76707871-76707890 None:intergenic 40.0%
ACATTTCCCTCCGAACAAAA+TGG - chr1_1:76707872-76707891 None:intergenic 40.0%
TCTATCATGATATTGCCAGG+TGG + chr1_1:76708210-76708229 Msa0045030:intron 40.0%
! ATCATTTGTTGGCATGGCTA+AGG + chr1_1:76708323-76708342 Msa0045030:CDS 40.0%
! CATGGCTAAGGTATTTGGTT+GGG + chr1_1:76708335-76708354 Msa0045030:CDS 40.0%
AGGTATTTGGTTGGGAACAT+AGG + chr1_1:76708343-76708362 Msa0045030:CDS 40.0%
CTACATCAGCTAGCATAATC+TGG + chr1_1:76708835-76708854 Msa0045030:intron 40.0%
!! TTGTGATGGATCACAATAGC+TGG - chr1_1:76709048-76709067 None:intergenic 40.0%
CGATCACATTTAGCGACTAT+GGG - chr1_1:76709534-76709553 None:intergenic 40.0%
TCGATCACATTTAGCGACTA+TGG - chr1_1:76709535-76709554 None:intergenic 40.0%
AAAGCGCGTTCTTTCATCTT+GGG + chr1_1:76709554-76709573 Msa0045030:CDS 40.0%
TCATCTTGGGTTCCTTATTG+TGG + chr1_1:76709567-76709586 Msa0045030:CDS 40.0%
!! AGATTGAGTTTTCAAGCGTG+CGG + chr1_1:76709613-76709632 Msa0045030:CDS 40.0%
! CGATTTGGATATAAAGCAGC+TGG + chr1_1:76709865-76709884 Msa0045030:CDS 40.0%
AGAGTTAGAACAGCTATGTG+AGG + chr1_1:76709897-76709916 Msa0045030:CDS 40.0%
! GCTATGTGAGGAGTATGAAA+TGG + chr1_1:76709909-76709928 Msa0045030:CDS 40.0%
AGGAGACGTGAAATATGTCT+CGG + chr1_1:76710053-76710072 Msa0045030:CDS 40.0%
! GAAATATGTCTCGGAGCTTT+TGG + chr1_1:76710062-76710081 Msa0045030:CDS 40.0%
TCTGAATGTTTCTCGATCAG+TGG - chr1_1:76710115-76710134 None:intergenic 40.0%
TTGAATCTAGCACCAAAGGA+AGG + chr1_1:76710174-76710193 Msa0045030:CDS 40.0%
!! GAGAAGTGTTCACTGTTACT+TGG + chr1_1:76710204-76710223 Msa0045030:CDS 40.0%
!! CGCCGTAATCTGTTTCTATA+TGG - chr1_1:76710278-76710297 None:intergenic 40.0%
! GGCGGTTTGAGTGATATTTT+TGG + chr1_1:76710294-76710313 Msa0045030:CDS 40.0%
TTCCTGTAGCAGCTTAAACG+AGG + chr1_1:76707123-76707142 Msa0045030:intron 45.0%
TTCCTCGTTTAAGCTGCTAC+AGG - chr1_1:76707128-76707147 None:intergenic 45.0%
TAGCAGCTTAAACGAGGAAG+TGG + chr1_1:76707129-76707148 Msa0045030:intron 45.0%
TGATGCGGAGGAATTTGCAA+TGG + chr1_1:76707171-76707190 Msa0045030:CDS 45.0%
CACCGAAACAAGGTTTAAGG+GGG - chr1_1:76707300-76707319 None:intergenic 45.0%
GCACCGAAACAAGGTTTAAG+GGG - chr1_1:76707301-76707320 None:intergenic 45.0%
GTGGATGTCGATACTTCTGA+TGG + chr1_1:76707668-76707687 Msa0045030:intron 45.0%
! GGAGTTTTCACTTTGGACGT+TGG + chr1_1:76708148-76708167 Msa0045030:intron 45.0%
! GTTGGCATGGCTAAGGTATT+TGG + chr1_1:76708330-76708349 Msa0045030:CDS 45.0%
! GCATGGCTAAGGTATTTGGT+TGG + chr1_1:76708334-76708353 Msa0045030:CDS 45.0%
GCAAAACTAGGACAATGTCG+CGG + chr1_1:76708886-76708905 Msa0045030:intron 45.0%
TACCACTACCTCATGGGATA+AGG - chr1_1:76709089-76709108 None:intergenic 45.0%
! TTATCCCATGAGGTAGTGGT+AGG + chr1_1:76709088-76709107 Msa0045030:intron 45.0%
! GAAAGCGCGTTCTTTCATCT+TGG + chr1_1:76709553-76709572 Msa0045030:CDS 45.0%
! GGGAGCATGTTACCACAATA+AGG - chr1_1:76709582-76709601 None:intergenic 45.0%
TCAAAAGAGCTTAGAGTGCG+TGG + chr1_1:76709669-76709688 Msa0045030:CDS 45.0%
TCTGTACTGGAACTTCTTGC+AGG + chr1_1:76709832-76709851 Msa0045030:intron 45.0%
TAGGAGCAGACACCTTATAC+TGG - chr1_1:76710143-76710162 None:intergenic 45.0%
!! TAAGTTAATTATATATAAAA+AGG + chr1_1:76708605-76708624 Msa0045030:intron 5.0%
AAACAAGGTTTAAGGGGGCG+TGG - chr1_1:76707295-76707314 None:intergenic 50.0%
! CGCCCCCTTAAACCTTGTTT+CGG + chr1_1:76707295-76707314 Msa0045030:CDS 50.0%
! TCTTCCAAGTCTTCTGGAGG+AGG + chr1_1:76707385-76707404 Msa0045030:CDS 50.0%
!! TTTCCGATGTGCTCTGGGAT+TGG + chr1_1:76707482-76707501 Msa0045030:intron 50.0%
AGACCAATCCCAGAGCACAT+CGG - chr1_1:76707488-76707507 None:intergenic 50.0%
TGCCACTGCAGATATTCCGT+CGG - chr1_1:76707780-76707799 None:intergenic 50.0%
CCAGGTGGAATTGTAGCGTT+GGG + chr1_1:76708225-76708244 Msa0045030:intron 50.0%
GCAATTCAAGCATCAAGGGC+TGG + chr1_1:76708285-76708304 Msa0045030:CDS 50.0%
AGCTGATGTAGCGACAGTAG+CGG - chr1_1:76708826-76708845 None:intergenic 50.0%
! CAATGTCGCGGTTTTCACAG+TGG + chr1_1:76708898-76708917 Msa0045030:intron 50.0%
! TTCTCCAGCCTTATCCCATG+AGG + chr1_1:76709078-76709097 Msa0045030:intron 50.0%
ACTACCTCATGGGATAAGGC+TGG - chr1_1:76709085-76709104 None:intergenic 50.0%
! AGCCTTATCCCATGAGGTAG+TGG + chr1_1:76709084-76709103 Msa0045030:intron 50.0%
GACACCTACCACTACCTCAT+GGG - chr1_1:76709095-76709114 None:intergenic 50.0%
AGACACCTACCACTACCTCA+TGG - chr1_1:76709096-76709115 None:intergenic 50.0%
! GCAGGTGAGAACTACCGATT+TGG + chr1_1:76709850-76709869 Msa0045030:intron 50.0%
!! CAGTACTGGCTCCAAAGAGA+GGG + chr1_1:76709990-76710009 Msa0045030:CDS 50.0%
!! AGTACTGGCTCCAAAGAGAG+GGG + chr1_1:76709991-76710010 Msa0045030:CDS 50.0%
!! TTCGGATTCGGTGGATGGGT+CGG - chr1_1:76707088-76707107 None:intergenic 55.0%
! TCCAAGTCTTCTGGAGGAGG+AGG + chr1_1:76707388-76707407 Msa0045030:CDS 55.0%
TCCTCCTCCTCCAGAAGACT+TGG - chr1_1:76707392-76707411 None:intergenic 55.0%
!! TGTGCTCTGGGATTGGTCTC+TGG + chr1_1:76707489-76707508 Msa0045030:intron 55.0%
CTCCGACGGAATATCTGCAG+TGG + chr1_1:76707775-76707794 Msa0045030:CDS 55.0%
GACGGAATATCTGCAGTGGC+AGG + chr1_1:76707779-76707798 Msa0045030:CDS 55.0%
GCCAGGTGGAATTGTAGCGT+TGG + chr1_1:76708224-76708243 Msa0045030:intron 55.0%
CCCAACGCTACAATTCCACC+TGG - chr1_1:76708228-76708247 None:intergenic 55.0%
GCGACTATGGGAGCTCTGTT+TGG - chr1_1:76709522-76709541 None:intergenic 55.0%
AGAGTGCGTGGAGTTGTTGC+AGG + chr1_1:76709681-76709700 Msa0045030:CDS 55.0%
!! CCTCTCTTTGGAGCCAGTAC+TGG - chr1_1:76709992-76710011 None:intergenic 55.0%
!! CCAGTACTGGCTCCAAAGAG+AGG + chr1_1:76709989-76710008 Msa0045030:CDS 55.0%
!! TCGGATTCGGTGGATGGGTC+GGG - chr1_1:76707087-76707106 None:intergenic 60.0%
CTCCTACAGCAAGCGCTTCG+CGG - chr1_1:76710038-76710057 None:intergenic 60.0%
TGGCTCCAAAGAGAGGGGCC+AGG + chr1_1:76709996-76710015 Msa0045030:CDS 65.0%
CGAGACCTGGCCCCTCTCTT+TGG - chr1_1:76710004-76710023 None:intergenic 65.0%
! GGACACGGGTTGACGAGACC+TGG - chr1_1:76710017-76710036 None:intergenic 65.0%
AGCAAGCGCTTCGCGGACAC+GGG - chr1_1:76710031-76710050 None:intergenic 65.0%
CAGCAAGCGCTTCGCGGACA+CGG - chr1_1:76710032-76710051 None:intergenic 65.0%
!! GTCCGCGAAGCGCTTGCTGT+AGG + chr1_1:76710033-76710052 Msa0045030:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 76707047 76710513 76707047 ID=Msa0045030;Name=Msa0045030
chr1_1 mRNA 76707047 76710513 76707047 ID=Msa0045030-mRNA-1;Parent=Msa0045030;Name=Msa0045030-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.8|0.66|0.83|0.8|0.66|6|145|398
chr1_1 exon 76707047 76707054 76707047 ID=Msa0045030-mRNA-1:exon:26170;Parent=Msa0045030-mRNA-1
chr1_1 exon 76707135 76707443 76707135 ID=Msa0045030-mRNA-1:exon:26171;Parent=Msa0045030-mRNA-1
chr1_1 exon 76707748 76707800 76707748 ID=Msa0045030-mRNA-1:exon:26172;Parent=Msa0045030-mRNA-1
chr1_1 exon 76708229 76708364 76708229 ID=Msa0045030-mRNA-1:exon:26173;Parent=Msa0045030-mRNA-1
chr1_1 exon 76709527 76709702 76709527 ID=Msa0045030-mRNA-1:exon:26174;Parent=Msa0045030-mRNA-1
chr1_1 exon 76709854 76710513 76709854 ID=Msa0045030-mRNA-1:exon:26175;Parent=Msa0045030-mRNA-1
chr1_1 CDS 76707047 76707054 76707047 ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1
chr1_1 CDS 76707135 76707443 76707135 ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1
chr1_1 CDS 76707748 76707800 76707748 ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1
chr1_1 CDS 76708229 76708364 76708229 ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1
chr1_1 CDS 76709527 76709702 76709527 ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1
chr1_1 CDS 76709854 76710368 76709854 ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1
chr1_1 three_prime_UTR 76710369 76710513 76710369 ID=Msa0045030-mRNA-1:three_prime_utr;Parent=Msa0045030-mRNA-1
Gene Sequence

>Msa0045030

ATGAGTGACTTAAACGAGGAAGTGGAAAGTGGTAGAAGATTTGATGATGCGGAGGAATTTGCAATGGTGTTGTTTTGTGTGAATCGTATTTCGCATCATTTTCGGGACTGTGAACTTCTTCACTTTGGTGTTGGTTTCAGATTTCACACTTTTCATCTTTCTTTTCCACGCCCCCTTAAACCTTGTTTCGGTGCTAATAGCATCGCCGTTACTACTTGTACTAACCGAAACAAAACACTCCAATCAAACAAATGCTATTCTTCCAAGTCTTCTGGAGGAGGAGGAGATATTCCCCTCCTTTTCGATTCTTCTTTCAGCCAACAAGAAGATGATCATGAAATTGTCTCCGACGGAATATCTGCAGTGGCAGGTGGAATTGTAGCGTTGGGAAAGTTTGATGCTCTTCACATAGGTCATCGAGAACTTGCAATTCAAGCATCAAGGGCTGGTCCTCCATTTCTTTTATCATTTGTTGGCATGGCTAAGGTATTTGGTTGGGAACATAGAGCTCCCATAGTCGCTAAATGTGATCGAAAGCGCGTTCTTTCATCTTGGGTTCCTTATTGTGGTAACATGCTCCCAGAAGAGTTTGAGATTGAGTTTTCAAGCGTGCGGCATCTCAGTCCGCGACAATTTGTTGAGAAGTTATCAAAAGAGCTTAGAGTGCGTGGAGTTGTTGCAGGTGAGAACTACCGATTTGGATATAAAGCAGCTGGTGATGCATCAGAGTTAGAACAGCTATGTGAGGAGTATGAAATGGAAGCTTACATAATAAAATCTGTTATGGACAAGAACCAATACTCAACAAATATAAATTCCAGTACTGGCTCCAAAGAGAGGGGCCAGGTCTCGTCAACCCGTGTCCGCGAAGCGCTTGCTGTAGGAGACGTGAAATATGTCTCGGAGCTTTTGGGTAGACAACATCGTCTTGTATTAATGGCCACTGATCGAGAAACATTCAGATTTAGCCAGTATAAGGTGTCTGCTCCTAAATCATGCTTATTGAATCTAGCACCAAAGGAAGGTTTATATGAGAAGTGTTCACTGTTACTTGGTCAAGAAAATGTTATGCTATGTAGGGTAATTATTGACAGCAAGTTTGTCCATATAGAAACAGATTACGGCGGTTTGAGTGATATTTTTGGTACTCACAATTTGCAGTACTTGCATATTGAATTTGGTGATTCTAGTACTTGA

Protein sequence

>Msa0045030

MSDLNEEVESGRRFDDAEEFAMVLFCVNRISHHFRDCELLHFGVGFRFHTFHLSFPRPLKPCFGANSIAVTTCTNRNKTLQSNKCYSSKSSGGGGDIPLLFDSSFSQQEDDHEIVSDGISAVAGGIVALGKFDALHIGHRELAIQASRAGPPFLLSFVGMAKVFGWEHRAPIVAKCDRKRVLSSWVPYCGNMLPEEFEIEFSSVRHLSPRQFVEKLSKELRVRGVVAGENYRFGYKAAGDASELEQLCEEYEMEAYIIKSVMDKNQYSTNINSSTGSKERGQVSSTRVREALAVGDVKYVSELLGRQHRLVLMATDRETFRFSQYKVSAPKSCLLNLAPKEGLYEKCSLLLGQENVMLCRVIIDSKFVHIETDYGGLSDIFGTHNLQYLHIEFGDSST*