Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0045030 | sp|Q8VZR0|RIBF2_ARATH | 61.000 | 300 | 113 | 3 | 95 | 394 | 72 | 367 | 2.34e-124 | 367 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0045030 | Msa0045080 | 0.822431 | 2.377354e-53 | -8.615850e-47 |
Msa0045030 | Msa1084980 | 0.827914 | 1.202422e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0045030 | MtrunA17_Chr1g0212021 | 90.981 | 377 | 28 | 1 | 22 | 398 | 1 | 371 | 0.0 | 708 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0045030 | AT5G08340.1 | 61.000 | 300 | 113 | 3 | 95 | 394 | 72 | 367 | 2.38e-125 | 367 |
Msa0045030 | AT5G23330.1 | 61.204 | 299 | 113 | 3 | 97 | 394 | 58 | 354 | 2.11e-123 | 361 |
Msa0045030 | AT5G08340.2 | 64.158 | 279 | 96 | 3 | 95 | 373 | 72 | 346 | 2.89e-123 | 360 |
Find 93 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATATGTCTCGGAGCTTT+TGG | 0.209633 | 1_1:+76710062 | Msa0045030:CDS |
TAGCACCGAAACAAGGTTTA+AGG | 0.230397 | 1_1:-76707300 | None:intergenic |
AACTCAATCTCAAACTCTTC+TGG | 0.231381 | 1_1:-76709600 | None:intergenic |
CATAATGCATCAAGGGAAAA+AGG | 0.232094 | 1_1:-76710487 | None:intergenic |
CAGTACTTGCATATTGAATT+TGG | 0.253783 | 1_1:+76710330 | Msa0045030:CDS |
AGATTCAATAAGCATGATTT+AGG | 0.264654 | 1_1:-76710159 | None:intergenic |
TGCTATTCTTCCAAGTCTTC+TGG | 0.269569 | 1_1:+76707379 | Msa0045030:CDS |
CGAGACCTGGCCCCTCTCTT+TGG | 0.273632 | 1_1:-76710001 | None:intergenic |
CGCCGTAATCTGTTTCTATA+TGG | 0.280483 | 1_1:-76710275 | None:intergenic |
TCGATCACATTTAGCGACTA+TGG | 0.286199 | 1_1:-76709532 | None:intergenic |
GTTGGCATGGCTAAGGTATT+TGG | 0.295852 | 1_1:+76708330 | Msa0045030:CDS |
ATTCAGATTTAGCCAGTATA+AGG | 0.305630 | 1_1:+76710128 | Msa0045030:CDS |
ACAACATCGTCTTGTATTAA+TGG | 0.318588 | 1_1:+76710089 | Msa0045030:CDS |
AAGAATAGCATTTGTTTGAT+TGG | 0.327967 | 1_1:-76707366 | None:intergenic |
TTTCATGATCATCTTCTTGT+TGG | 0.344316 | 1_1:-76707748 | None:intergenic |
CCTCTCTTTGGAGCCAGTAC+TGG | 0.378348 | 1_1:-76709989 | None:intergenic |
AAGAAAATGTTATGCTATGT+AGG | 0.384809 | 1_1:+76710229 | Msa0045030:CDS |
AAAGCGCGTTCTTTCATCTT+GGG | 0.389450 | 1_1:+76709554 | Msa0045030:CDS |
AGAGTGCGTGGAGTTGTTGC+AGG | 0.403620 | 1_1:+76709681 | Msa0045030:CDS |
TTCTCATATAAACCTTCCTT+TGG | 0.405100 | 1_1:-76710186 | None:intergenic |
CCAACAAATGATAAAAGAAA+TGG | 0.405504 | 1_1:-76708312 | None:intergenic |
ACTCAATCTCAAACTCTTCT+GGG | 0.406701 | 1_1:-76709599 | None:intergenic |
TAGGAGCAGACACCTTATAC+TGG | 0.407488 | 1_1:-76710140 | None:intergenic |
GGGAGCATGTTACCACAATA+AGG | 0.409917 | 1_1:-76709579 | None:intergenic |
CATGGCTAAGGTATTTGGTT+GGG | 0.420470 | 1_1:+76708335 | Msa0045030:CDS |
TTACATAATAAAATCTGTTA+TGG | 0.427036 | 1_1:+76709936 | Msa0045030:CDS |
AATTTATATTTGTTGAGTAT+TGG | 0.428731 | 1_1:-76709966 | None:intergenic |
GCAGGTGAGAACTACCGATT+TGG | 0.429036 | 1_1:+76709850 | Msa0045030:intron |
AGCACCGAAACAAGGTTTAA+GGG | 0.440737 | 1_1:-76707299 | None:intergenic |
GAACTTCTTCACTTTGGTGT+TGG | 0.442787 | 1_1:+76707238 | Msa0045030:CDS |
GAAAGCGCGTTCTTTCATCT+TGG | 0.448349 | 1_1:+76709553 | Msa0045030:CDS |
CCAGGTGGAATTGTAGCGTT+GGG | 0.455534 | 1_1:+76708225 | Msa0045030:intron |
TCATCTTGGGTTCCTTATTG+TGG | 0.457058 | 1_1:+76709567 | Msa0045030:CDS |
GTCCATATAGAAACAGATTA+CGG | 0.460529 | 1_1:+76710273 | Msa0045030:CDS |
CGATCACATTTAGCGACTAT+GGG | 0.461216 | 1_1:-76709531 | None:intergenic |
ATCATTTGTTGGCATGGCTA+AGG | 0.464451 | 1_1:+76708323 | Msa0045030:CDS |
GCTATGTGAGGAGTATGAAA+TGG | 0.466573 | 1_1:+76709909 | Msa0045030:CDS |
AGGTATTTGGTTGGGAACAT+AGG | 0.468357 | 1_1:+76708343 | Msa0045030:CDS |
CTCCTACAGCAAGCGCTTCG+CGG | 0.471188 | 1_1:-76710035 | None:intergenic |
CAGCAAGCGCTTCGCGGACA+CGG | 0.472253 | 1_1:-76710029 | None:intergenic |
GAGAAGTGTTCACTGTTACT+TGG | 0.476809 | 1_1:+76710204 | Msa0045030:CDS |
TCCTCCTCCTCCAGAAGACT+TGG | 0.478454 | 1_1:-76707389 | None:intergenic |
ACAAATATAAATTCCAGTAC+TGG | 0.481740 | 1_1:+76709976 | Msa0045030:CDS |
TACAGATGATTCTTATGTCC+CGG | 0.486653 | 1_1:+76710414 | Msa0045030:three_prime_UTR |
CAGCTGCTTTATATCCAAAT+CGG | 0.493817 | 1_1:-76709864 | None:intergenic |
TCCAAGTCTTCTGGAGGAGG+AGG | 0.499467 | 1_1:+76707388 | Msa0045030:CDS |
GCCAGGTGGAATTGTAGCGT+TGG | 0.502010 | 1_1:+76708224 | Msa0045030:intron |
AACTTGCAATTCAAGCATCA+AGG | 0.520418 | 1_1:+76708280 | Msa0045030:CDS |
TAGCAGCTTAAACGAGGAAG+TGG | 0.520468 | 1_1:+76707129 | Msa0045030:intron |
GACTGTGAACTTCTTCACTT+TGG | 0.524178 | 1_1:+76707232 | Msa0045030:CDS |
GCATGGCTAAGGTATTTGGT+TGG | 0.524252 | 1_1:+76708334 | Msa0045030:CDS |
TCTTCCAAGTCTTCTGGAGG+AGG | 0.524835 | 1_1:+76707385 | Msa0045030:CDS |
ACCTGAAAGAAGAATCGAAA+AGG | 0.525787 | 1_1:-76707423 | None:intergenic |
CGATTTGGATATAAAGCAGC+TGG | 0.526419 | 1_1:+76709865 | Msa0045030:CDS |
GACGGAATATCTGCAGTGGC+AGG | 0.537676 | 1_1:+76707779 | Msa0045030:CDS |
AGAAAATGTTATGCTATGTA+GGG | 0.539473 | 1_1:+76710230 | Msa0045030:CDS |
CTTATTGAATCTAGCACCAA+AGG | 0.542329 | 1_1:+76710170 | Msa0045030:CDS |
AAGTTTGATGCTCTTCACAT+AGG | 0.555202 | 1_1:+76708249 | Msa0045030:CDS |
AGCAAGCGCTTCGCGGACAC+GGG | 0.560481 | 1_1:-76710028 | None:intergenic |
GCAATTCAAGCATCAAGGGC+TGG | 0.566180 | 1_1:+76708285 | Msa0045030:CDS |
CAGTACTGGCTCCAAAGAGA+GGG | 0.575024 | 1_1:+76709990 | Msa0045030:CDS |
GAAAGAAGAATCGAAAAGGA+GGG | 0.578243 | 1_1:-76707419 | None:intergenic |
TGGCTCCAAAGAGAGGGGCC+AGG | 0.581057 | 1_1:+76709996 | Msa0045030:CDS |
TTGAATCTAGCACCAAAGGA+AGG | 0.582942 | 1_1:+76710174 | Msa0045030:CDS |
TTTGAGGGCATAATGCATCA+AGG | 0.583449 | 1_1:-76710495 | None:intergenic |
GTCCGCGAAGCGCTTGCTGT+AGG | 0.588806 | 1_1:+76710033 | Msa0045030:CDS |
GCACCGAAACAAGGTTTAAG+GGG | 0.592031 | 1_1:-76707298 | None:intergenic |
GGACACGGGTTGACGAGACC+TGG | 0.592925 | 1_1:-76710014 | None:intergenic |
TCAAAAGAGCTTAGAGTGCG+TGG | 0.596134 | 1_1:+76709669 | Msa0045030:CDS |
TGAAAGAAGAATCGAAAAGG+AGG | 0.596345 | 1_1:-76707420 | None:intergenic |
ACTTGCAATTCAAGCATCAA+GGG | 0.598932 | 1_1:+76708281 | Msa0045030:CDS |
CCAGTACTGGCTCCAAAGAG+AGG | 0.599060 | 1_1:+76709989 | Msa0045030:CDS |
ATGCTATTAGCACCGAAACA+AGG | 0.599957 | 1_1:-76707307 | None:intergenic |
ACAAATGATAAAAGAAATGG+AGG | 0.605894 | 1_1:-76708309 | None:intergenic |
AAAGAAGAATCGAAAAGGAG+GGG | 0.608086 | 1_1:-76707418 | None:intergenic |
TCGGTTAGTACAAGTAGTAA+CGG | 0.610624 | 1_1:-76707332 | None:intergenic |
TTGAGGGCATAATGCATCAA+GGG | 0.610688 | 1_1:-76710494 | None:intergenic |
TCTGAATGTTTCTCGATCAG+TGG | 0.620902 | 1_1:-76710112 | None:intergenic |
GATCATGAAATTGTCTCCGA+CGG | 0.635934 | 1_1:+76707761 | Msa0045030:CDS |
AACTTCTCAACAAATTGTCG+CGG | 0.636369 | 1_1:-76709645 | None:intergenic |
TGCCACTGCAGATATTCCGT+CGG | 0.639844 | 1_1:-76707777 | None:intergenic |
TTAAACGAGGAAGTGGAAAG+TGG | 0.642278 | 1_1:+76707136 | Msa0045030:CDS |
CACCGAAACAAGGTTTAAGG+GGG | 0.642539 | 1_1:-76707297 | None:intergenic |
AGGAGACGTGAAATATGTCT+CGG | 0.644336 | 1_1:+76710053 | Msa0045030:CDS |
TAGAAGATTTGATGATGCGG+AGG | 0.645347 | 1_1:+76707159 | Msa0045030:CDS |
TGGTAGAAGATTTGATGATG+CGG | 0.645810 | 1_1:+76707156 | Msa0045030:CDS |
TATTCTTCCAAGTCTTCTGG+AGG | 0.648615 | 1_1:+76707382 | Msa0045030:CDS |
CTCCGACGGAATATCTGCAG+TGG | 0.651596 | 1_1:+76707775 | Msa0045030:CDS |
AGAGTTAGAACAGCTATGTG+AGG | 0.658219 | 1_1:+76709897 | Msa0045030:CDS |
TTCCTGTAGCAGCTTAAACG+AGG | 0.686170 | 1_1:+76707123 | Msa0045030:intron |
TGATGCGGAGGAATTTGCAA+TGG | 0.693518 | 1_1:+76707171 | Msa0045030:CDS |
AGTACTGGCTCCAAAGAGAG+GGG | 0.695442 | 1_1:+76709991 | Msa0045030:CDS |
CATATAGAAACAGATTACGG+CGG | 0.701565 | 1_1:+76710276 | Msa0045030:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTACATTTTATTTTAAAACA+TGG | - | chr1_1:76707523-76707542 | None:intergenic | 10.0% |
!! | TTATATATTCAATTATTGAA+AGG | + | chr1_1:76708672-76708691 | Msa0045030:intron | 10.0% |
!!! | TATTTTATCAACTATAAAAT+AGG | - | chr1_1:76709394-76709413 | None:intergenic | 10.0% |
!! | ATAAGAAAAAAGAAAAGAAA+AGG | - | chr1_1:76707461-76707480 | None:intergenic | 15.0% |
!! | AACTTATTTCAATTGTTATA+CGG | - | chr1_1:76708591-76708610 | None:intergenic | 15.0% |
!! | GACAAAATTAGAATAAATTA+AGG | - | chr1_1:76709720-76709739 | None:intergenic | 15.0% |
!! | TTACATAATAAAATCTGTTA+TGG | + | chr1_1:76709936-76709955 | Msa0045030:CDS | 15.0% |
!!! | AATTTATATTTGTTGAGTAT+TGG | - | chr1_1:76709969-76709988 | None:intergenic | 15.0% |
!! | GAATCAGGATAATAATATTT+CGG | - | chr1_1:76707106-76707125 | None:intergenic | 20.0% |
!! | AAAAATGCACAAAAAGTTTA+GGG | - | chr1_1:76707990-76708009 | None:intergenic | 20.0% |
!! | AAAAAATGCACAAAAAGTTT+AGG | - | chr1_1:76707991-76708010 | None:intergenic | 20.0% |
!! | TACACACATACATATTATAA+TGG | + | chr1_1:76708455-76708474 | Msa0045030:intron | 20.0% |
!!! | AATTTCATATAACGGATTTT+TGG | - | chr1_1:76708561-76708580 | None:intergenic | 20.0% |
!! | ATGCTGCATATAAATAAAAA+AGG | + | chr1_1:76708629-76708648 | Msa0045030:intron | 20.0% |
!! | TGCTGCATATAAATAAAAAA+GGG | + | chr1_1:76708630-76708649 | Msa0045030:intron | 20.0% |
!! | CATATAAATAAAAAAGGGAT+TGG | + | chr1_1:76708635-76708654 | Msa0045030:intron | 20.0% |
!! | TGAAAGGTTTACATATATAT+AGG | + | chr1_1:76708688-76708707 | Msa0045030:intron | 20.0% |
!!! | AGCTTTTCTATTATATAACT+AGG | + | chr1_1:76708733-76708752 | Msa0045030:intron | 20.0% |
!! | ATTGTAATAATAGCAAAACT+AGG | + | chr1_1:76708874-76708893 | Msa0045030:intron | 20.0% |
!!! | TGTATTTAAAATCCACTTTA+AGG | + | chr1_1:76709264-76709283 | Msa0045030:intron | 20.0% |
!!! | ATAGTTGATAAAATAACGTT+TGG | + | chr1_1:76709399-76709418 | Msa0045030:intron | 20.0% |
!!! | AACTCATTTTCTTATTATCT+TGG | + | chr1_1:76709463-76709482 | Msa0045030:intron | 20.0% |
!! | ACATATTATGATTATGTGAA+CGG | - | chr1_1:76709757-76709776 | None:intergenic | 20.0% |
!! | TTCACATAATCATAATATGT+TGG | + | chr1_1:76709757-76709776 | Msa0045030:intron | 20.0% |
! | GGATAATAATATTTCGGATT+CGG | - | chr1_1:76707100-76707119 | None:intergenic | 25.0% |
! | AAGAATAGCATTTGTTTGAT+TGG | - | chr1_1:76707369-76707388 | None:intergenic | 25.0% |
! | TCATGAGTTCTATCAATAAT+TGG | + | chr1_1:76707570-76707589 | Msa0045030:intron | 25.0% |
! | TAAGAAACAATATCAATGAG+TGG | - | chr1_1:76707633-76707652 | None:intergenic | 25.0% |
!!! | CTTAACGATTTTTAATTGTG+TGG | + | chr1_1:76707649-76707668 | Msa0045030:intron | 25.0% |
! | AAAAATAACCCAATTGAACA+TGG | - | chr1_1:76707835-76707854 | None:intergenic | 25.0% |
!! | TTAGAATATCCCATTTTGTT+CGG | + | chr1_1:76707859-76707878 | Msa0045030:intron | 25.0% |
! | TACACAAAAACACATGTAAA+TGG | + | chr1_1:76708127-76708146 | Msa0045030:intron | 25.0% |
! | ACAAATGATAAAAGAAATGG+AGG | - | chr1_1:76708312-76708331 | None:intergenic | 25.0% |
! | CCAACAAATGATAAAAGAAA+TGG | - | chr1_1:76708315-76708334 | None:intergenic | 25.0% |
!! | CCATTTCTTTTATCATTTGT+TGG | + | chr1_1:76708312-76708331 | Msa0045030:CDS | 25.0% |
!! | GCTTTTGCAATTTCATATAA+CGG | - | chr1_1:76708569-76708588 | None:intergenic | 25.0% |
! | ATAAATAAAAAAGGGATTGG+AGG | + | chr1_1:76708638-76708657 | Msa0045030:intron | 25.0% |
! | TTATATAACTAGGTCATGTT+TGG | + | chr1_1:76708743-76708762 | Msa0045030:intron | 25.0% |
! | AATAAATGAAGGGTTACTAA+CGG | - | chr1_1:76708968-76708987 | None:intergenic | 25.0% |
!!! | AAGATTTACTTTTCTCTTCA+TGG | + | chr1_1:76709121-76709140 | Msa0045030:intron | 25.0% |
! | ATTTAGTGACAAGTATCAAA+TGG | - | chr1_1:76709173-76709192 | None:intergenic | 25.0% |
! | TCGAATACTTGTAATCATAA+TGG | - | chr1_1:76709294-76709313 | None:intergenic | 25.0% |
! | TCAACTATAAAATAGGCAAA+TGG | - | chr1_1:76709387-76709406 | None:intergenic | 25.0% |
!! | TCATTTTCTTATTATCTTGG+AGG | + | chr1_1:76709466-76709485 | Msa0045030:intron | 25.0% |
!! | CATTTTCTTATTATCTTGGA+GGG | + | chr1_1:76709467-76709486 | Msa0045030:intron | 25.0% |
! | GATAAATGGAAAATGGAAAA+TGG | - | chr1_1:76709790-76709809 | None:intergenic | 25.0% |
! | TATCTATTTCCATTTACATG+AGG | - | chr1_1:76709812-76709831 | None:intergenic | 25.0% |
! | ACAAATATAAATTCCAGTAC+TGG | + | chr1_1:76709976-76709995 | Msa0045030:CDS | 25.0% |
! | AGATTCAATAAGCATGATTT+AGG | - | chr1_1:76710162-76710181 | None:intergenic | 25.0% |
! | AAGAAAATGTTATGCTATGT+AGG | + | chr1_1:76710229-76710248 | Msa0045030:CDS | 25.0% |
! | AGAAAATGTTATGCTATGTA+GGG | + | chr1_1:76710230-76710249 | Msa0045030:CDS | 25.0% |
!! | TAAGACTTAGAATTTTCATC+CGG | - | chr1_1:76710436-76710455 | None:intergenic | 25.0% |
TAATAATATTTCGGATTCGG+TGG | - | chr1_1:76707097-76707116 | None:intergenic | 30.0% | |
! | ATCGTATTTCGCATCATTTT+CGG | + | chr1_1:76707209-76707228 | Msa0045030:CDS | 30.0% |
!!! | TTGATTGGAGTGTTTTGTTT+CGG | - | chr1_1:76707354-76707373 | None:intergenic | 30.0% |
TTTCATGATCATCTTCTTGT+TGG | - | chr1_1:76707751-76707770 | None:intergenic | 30.0% | |
! | ATTGCTCAACTGATTCTTAT+AGG | + | chr1_1:76707904-76707923 | Msa0045030:intron | 30.0% |
CACTAAGCTATAACTTCAAA+GGG | - | chr1_1:76707957-76707976 | None:intergenic | 30.0% | |
ACACTAAGCTATAACTTCAA+AGG | - | chr1_1:76707958-76707977 | None:intergenic | 30.0% | |
!!! | TTTTTTGTTTCTCTCCCTTT+TGG | + | chr1_1:76708006-76708025 | Msa0045030:intron | 30.0% |
TTGAGCATAAAAAGCCAAAA+GGG | - | chr1_1:76708023-76708042 | None:intergenic | 30.0% | |
ATTGAGCATAAAAAGCCAAA+AGG | - | chr1_1:76708024-76708043 | None:intergenic | 30.0% | |
! | TGTAAATGGAGTTTTCACTT+TGG | + | chr1_1:76708141-76708160 | Msa0045030:intron | 30.0% |
!! | TCTTTTATCATTTGTTGGCA+TGG | + | chr1_1:76708317-76708336 | Msa0045030:CDS | 30.0% |
CTTGTATCAAGCTCATTAAA+TGG | + | chr1_1:76708382-76708401 | Msa0045030:intron | 30.0% | |
!!! | ATACTGTTTTTTTACATCGC+TGG | + | chr1_1:76708411-76708430 | Msa0045030:intron | 30.0% |
GCAAACTACTGTTATAACAT+TGG | - | chr1_1:76708522-76708541 | None:intergenic | 30.0% | |
!!! | ATAACGGATTTTTGGCATTA+TGG | - | chr1_1:76708553-76708572 | None:intergenic | 30.0% |
GCGGAAAAAAGAGAATTTAT+AGG | - | chr1_1:76708807-76708826 | None:intergenic | 30.0% | |
CAAGTAGGGTAATAAATGAA+GGG | - | chr1_1:76708978-76708997 | None:intergenic | 30.0% | |
TACCATAGATTATCCAAGTA+GGG | - | chr1_1:76708992-76709011 | None:intergenic | 30.0% | |
!! | AGAATTTGTTGTTGTTGTGA+TGG | - | chr1_1:76709062-76709081 | None:intergenic | 30.0% |
TACTTGTCACTAAATGTCAT+TGG | + | chr1_1:76709178-76709197 | Msa0045030:intron | 30.0% | |
ACTTGTCACTAAATGTCATT+GGG | + | chr1_1:76709179-76709198 | Msa0045030:intron | 30.0% | |
AAAAACGATGACTAAACTTC+TGG | - | chr1_1:76709326-76709345 | None:intergenic | 30.0% | |
! | AGAAGTTTAGTCATCGTTTT+TGG | + | chr1_1:76709325-76709344 | Msa0045030:intron | 30.0% |
!! | GAAGTTTAGTCATCGTTTTT+GGG | + | chr1_1:76709326-76709345 | Msa0045030:intron | 30.0% |
ACATGAGGATAAATGGAAAA+TGG | - | chr1_1:76709797-76709816 | None:intergenic | 30.0% | |
TCCATTTATCCTCATGTAAA+TGG | + | chr1_1:76709800-76709819 | Msa0045030:intron | 30.0% | |
TCCATTTACATGAGGATAAA+TGG | - | chr1_1:76709804-76709823 | None:intergenic | 30.0% | |
ATGGAAATAGATATCTGTAC+TGG | + | chr1_1:76709819-76709838 | Msa0045030:intron | 30.0% | |
ACAACATCGTCTTGTATTAA+TGG | + | chr1_1:76710089-76710108 | Msa0045030:CDS | 30.0% | |
ATTCAGATTTAGCCAGTATA+AGG | + | chr1_1:76710128-76710147 | Msa0045030:CDS | 30.0% | |
TTCTCATATAAACCTTCCTT+TGG | - | chr1_1:76710189-76710208 | None:intergenic | 30.0% | |
GTCCATATAGAAACAGATTA+CGG | + | chr1_1:76710273-76710292 | Msa0045030:CDS | 30.0% | |
CAGTACTTGCATATTGAATT+TGG | + | chr1_1:76710330-76710349 | Msa0045030:CDS | 30.0% | |
! | AAGACTTAGAATTTTCATCC+GGG | - | chr1_1:76710435-76710454 | None:intergenic | 30.0% |
ATAATGCATCAAGGGAAAAA+GGG | - | chr1_1:76710489-76710508 | None:intergenic | 30.0% | |
AGAAATGAAGTCGGGTTATT+TGG | + | chr1_1:76707058-76707077 | Msa0045030:intron | 35.0% | |
!! | TGGTAGAAGATTTGATGATG+CGG | + | chr1_1:76707156-76707175 | Msa0045030:CDS | 35.0% |
! | TCGTATTTCGCATCATTTTC+GGG | + | chr1_1:76707210-76707229 | Msa0045030:CDS | 35.0% |
TCGGTTAGTACAAGTAGTAA+CGG | - | chr1_1:76707335-76707354 | None:intergenic | 35.0% | |
AAAGAAGAATCGAAAAGGAG+GGG | - | chr1_1:76707421-76707440 | None:intergenic | 35.0% | |
GAAAGAAGAATCGAAAAGGA+GGG | - | chr1_1:76707422-76707441 | None:intergenic | 35.0% | |
TGAAAGAAGAATCGAAAAGG+AGG | - | chr1_1:76707423-76707442 | None:intergenic | 35.0% | |
! | TCCTTTTCGATTCTTCTTTC+AGG | + | chr1_1:76707422-76707441 | Msa0045030:CDS | 35.0% |
ACCTGAAAGAAGAATCGAAA+AGG | - | chr1_1:76707426-76707445 | None:intergenic | 35.0% | |
!! | TTATTTTTCCGATGTGCTCT+GGG | + | chr1_1:76707477-76707496 | Msa0045030:intron | 35.0% |
TTACCGTTTCCATGTTCAAT+TGG | + | chr1_1:76707823-76707842 | Msa0045030:intron | 35.0% | |
TACCGTTTCCATGTTCAATT+GGG | + | chr1_1:76707824-76707843 | Msa0045030:intron | 35.0% | |
AACCCAATTGAACATGGAAA+CGG | - | chr1_1:76707829-76707848 | None:intergenic | 35.0% | |
! | AATATCCCATTTTGTTCGGA+GGG | + | chr1_1:76707863-76707882 | Msa0045030:intron | 35.0% |
GGAGGGAAATGTAATTGTAA+TGG | + | chr1_1:76707880-76707899 | Msa0045030:intron | 35.0% | |
! | CAACTGATTCTTATAGGATG+AGG | + | chr1_1:76707910-76707929 | Msa0045030:intron | 35.0% |
AAAGGGAAAAGAATTTGCAC+GGG | - | chr1_1:76707940-76707959 | None:intergenic | 35.0% | |
CAAAGGGAAAAGAATTTGCA+CGG | - | chr1_1:76707941-76707960 | None:intergenic | 35.0% | |
ACTAGTATCCCTTACTTATG+TGG | + | chr1_1:76708091-76708110 | Msa0045030:intron | 35.0% | |
ATCCCTTACTTATGTGGTAT+AGG | + | chr1_1:76708097-76708116 | Msa0045030:intron | 35.0% | |
TCCCTTACTTATGTGGTATA+GGG | + | chr1_1:76708098-76708117 | Msa0045030:intron | 35.0% | |
TCCCTATACCACATAAGTAA+GGG | - | chr1_1:76708102-76708121 | None:intergenic | 35.0% | |
TTCCCTATACCACATAAGTA+AGG | - | chr1_1:76708103-76708122 | None:intergenic | 35.0% | |
CTATCTATCATGATATTGCC+AGG | + | chr1_1:76708207-76708226 | Msa0045030:intron | 35.0% | |
AAGTTTGATGCTCTTCACAT+AGG | + | chr1_1:76708249-76708268 | Msa0045030:CDS | 35.0% | |
AACTTGCAATTCAAGCATCA+AGG | + | chr1_1:76708280-76708299 | Msa0045030:CDS | 35.0% | |
ACTTGCAATTCAAGCATCAA+GGG | + | chr1_1:76708281-76708300 | Msa0045030:CDS | 35.0% | |
ACATCGCTGGAAAATATGTT+TGG | + | chr1_1:76708424-76708443 | Msa0045030:intron | 35.0% | |
GTGACTCTTTCTTTGCAATA+CGG | + | chr1_1:76708481-76708500 | Msa0045030:intron | 35.0% | |
TGACTCTTTCTTTGCAATAC+GGG | + | chr1_1:76708482-76708501 | Msa0045030:intron | 35.0% | |
CCAAGTAGGGTAATAAATGA+AGG | - | chr1_1:76708979-76708998 | None:intergenic | 35.0% | |
CCTTCATTTATTACCCTACT+TGG | + | chr1_1:76708976-76708995 | Msa0045030:intron | 35.0% | |
TACCCTACTTGGATAATCTA+TGG | + | chr1_1:76708987-76709006 | Msa0045030:intron | 35.0% | |
CTACCATAGATTATCCAAGT+AGG | - | chr1_1:76708993-76709012 | None:intergenic | 35.0% | |
CATAATGGTCTTCCTTAAAG+TGG | - | chr1_1:76709279-76709298 | None:intergenic | 35.0% | |
ACTCAATCTCAAACTCTTCT+GGG | - | chr1_1:76709602-76709621 | None:intergenic | 35.0% | |
AACTCAATCTCAAACTCTTC+TGG | - | chr1_1:76709603-76709622 | None:intergenic | 35.0% | |
AACTTCTCAACAAATTGTCG+CGG | - | chr1_1:76709648-76709667 | None:intergenic | 35.0% | |
! | CAGCTGCTTTATATCCAAAT+CGG | - | chr1_1:76709867-76709886 | None:intergenic | 35.0% |
! | AAATATGTCTCGGAGCTTTT+GGG | + | chr1_1:76710063-76710082 | Msa0045030:CDS | 35.0% |
CTTATTGAATCTAGCACCAA+AGG | + | chr1_1:76710170-76710189 | Msa0045030:CDS | 35.0% | |
CATATAGAAACAGATTACGG+CGG | + | chr1_1:76710276-76710295 | Msa0045030:CDS | 35.0% | |
TACAGATGATTCTTATGTCC+CGG | + | chr1_1:76710414-76710433 | Msa0045030:three_prime_UTR | 35.0% | |
CATAATGCATCAAGGGAAAA+AGG | - | chr1_1:76710490-76710509 | None:intergenic | 35.0% | |
GAGTGAGTGAGAAATGAAGT+CGG | + | chr1_1:76707049-76707068 | Msa0045030:intron | 40.0% | |
AGTGAGTGAGAAATGAAGTC+GGG | + | chr1_1:76707050-76707069 | Msa0045030:intron | 40.0% | |
!! | ATATTTCGGATTCGGTGGAT+GGG | - | chr1_1:76707092-76707111 | None:intergenic | 40.0% |
!! | AATATTTCGGATTCGGTGGA+TGG | - | chr1_1:76707093-76707112 | None:intergenic | 40.0% |
TTTAAGCTGCTACAGGAATC+AGG | - | chr1_1:76707121-76707140 | None:intergenic | 40.0% | |
TTAAACGAGGAAGTGGAAAG+TGG | + | chr1_1:76707136-76707155 | Msa0045030:CDS | 40.0% | |
!! | TAGAAGATTTGATGATGCGG+AGG | + | chr1_1:76707159-76707178 | Msa0045030:CDS | 40.0% |
GACTGTGAACTTCTTCACTT+TGG | + | chr1_1:76707232-76707251 | Msa0045030:CDS | 40.0% | |
! | GAACTTCTTCACTTTGGTGT+TGG | + | chr1_1:76707238-76707257 | Msa0045030:CDS | 40.0% |
! | AGCACCGAAACAAGGTTTAA+GGG | - | chr1_1:76707302-76707321 | None:intergenic | 40.0% |
! | TAGCACCGAAACAAGGTTTA+AGG | - | chr1_1:76707303-76707322 | None:intergenic | 40.0% |
! | ATGCTATTAGCACCGAAACA+AGG | - | chr1_1:76707310-76707329 | None:intergenic | 40.0% |
TGCTATTCTTCCAAGTCTTC+TGG | + | chr1_1:76707379-76707398 | Msa0045030:CDS | 40.0% | |
TATTCTTCCAAGTCTTCTGG+AGG | + | chr1_1:76707382-76707401 | Msa0045030:CDS | 40.0% | |
!! | CTTATTTTTCCGATGTGCTC+TGG | + | chr1_1:76707476-76707495 | Msa0045030:intron | 40.0% |
CAGTGTATGAGAGTCTTAGT+AGG | - | chr1_1:76707703-76707722 | None:intergenic | 40.0% | |
GATCATGAAATTGTCTCCGA+CGG | + | chr1_1:76707761-76707780 | Msa0045030:CDS | 40.0% | |
! | GAATATCCCATTTTGTTCGG+AGG | + | chr1_1:76707862-76707881 | Msa0045030:intron | 40.0% |
CATTTCCCTCCGAACAAAAT+GGG | - | chr1_1:76707871-76707890 | None:intergenic | 40.0% | |
ACATTTCCCTCCGAACAAAA+TGG | - | chr1_1:76707872-76707891 | None:intergenic | 40.0% | |
TCTATCATGATATTGCCAGG+TGG | + | chr1_1:76708210-76708229 | Msa0045030:intron | 40.0% | |
! | ATCATTTGTTGGCATGGCTA+AGG | + | chr1_1:76708323-76708342 | Msa0045030:CDS | 40.0% |
! | CATGGCTAAGGTATTTGGTT+GGG | + | chr1_1:76708335-76708354 | Msa0045030:CDS | 40.0% |
AGGTATTTGGTTGGGAACAT+AGG | + | chr1_1:76708343-76708362 | Msa0045030:CDS | 40.0% | |
CTACATCAGCTAGCATAATC+TGG | + | chr1_1:76708835-76708854 | Msa0045030:intron | 40.0% | |
!! | TTGTGATGGATCACAATAGC+TGG | - | chr1_1:76709048-76709067 | None:intergenic | 40.0% |
CGATCACATTTAGCGACTAT+GGG | - | chr1_1:76709534-76709553 | None:intergenic | 40.0% | |
TCGATCACATTTAGCGACTA+TGG | - | chr1_1:76709535-76709554 | None:intergenic | 40.0% | |
AAAGCGCGTTCTTTCATCTT+GGG | + | chr1_1:76709554-76709573 | Msa0045030:CDS | 40.0% | |
TCATCTTGGGTTCCTTATTG+TGG | + | chr1_1:76709567-76709586 | Msa0045030:CDS | 40.0% | |
!! | AGATTGAGTTTTCAAGCGTG+CGG | + | chr1_1:76709613-76709632 | Msa0045030:CDS | 40.0% |
! | CGATTTGGATATAAAGCAGC+TGG | + | chr1_1:76709865-76709884 | Msa0045030:CDS | 40.0% |
AGAGTTAGAACAGCTATGTG+AGG | + | chr1_1:76709897-76709916 | Msa0045030:CDS | 40.0% | |
! | GCTATGTGAGGAGTATGAAA+TGG | + | chr1_1:76709909-76709928 | Msa0045030:CDS | 40.0% |
AGGAGACGTGAAATATGTCT+CGG | + | chr1_1:76710053-76710072 | Msa0045030:CDS | 40.0% | |
! | GAAATATGTCTCGGAGCTTT+TGG | + | chr1_1:76710062-76710081 | Msa0045030:CDS | 40.0% |
TCTGAATGTTTCTCGATCAG+TGG | - | chr1_1:76710115-76710134 | None:intergenic | 40.0% | |
TTGAATCTAGCACCAAAGGA+AGG | + | chr1_1:76710174-76710193 | Msa0045030:CDS | 40.0% | |
!! | GAGAAGTGTTCACTGTTACT+TGG | + | chr1_1:76710204-76710223 | Msa0045030:CDS | 40.0% |
!! | CGCCGTAATCTGTTTCTATA+TGG | - | chr1_1:76710278-76710297 | None:intergenic | 40.0% |
! | GGCGGTTTGAGTGATATTTT+TGG | + | chr1_1:76710294-76710313 | Msa0045030:CDS | 40.0% |
TTCCTGTAGCAGCTTAAACG+AGG | + | chr1_1:76707123-76707142 | Msa0045030:intron | 45.0% | |
TTCCTCGTTTAAGCTGCTAC+AGG | - | chr1_1:76707128-76707147 | None:intergenic | 45.0% | |
TAGCAGCTTAAACGAGGAAG+TGG | + | chr1_1:76707129-76707148 | Msa0045030:intron | 45.0% | |
TGATGCGGAGGAATTTGCAA+TGG | + | chr1_1:76707171-76707190 | Msa0045030:CDS | 45.0% | |
CACCGAAACAAGGTTTAAGG+GGG | - | chr1_1:76707300-76707319 | None:intergenic | 45.0% | |
GCACCGAAACAAGGTTTAAG+GGG | - | chr1_1:76707301-76707320 | None:intergenic | 45.0% | |
GTGGATGTCGATACTTCTGA+TGG | + | chr1_1:76707668-76707687 | Msa0045030:intron | 45.0% | |
! | GGAGTTTTCACTTTGGACGT+TGG | + | chr1_1:76708148-76708167 | Msa0045030:intron | 45.0% |
! | GTTGGCATGGCTAAGGTATT+TGG | + | chr1_1:76708330-76708349 | Msa0045030:CDS | 45.0% |
! | GCATGGCTAAGGTATTTGGT+TGG | + | chr1_1:76708334-76708353 | Msa0045030:CDS | 45.0% |
GCAAAACTAGGACAATGTCG+CGG | + | chr1_1:76708886-76708905 | Msa0045030:intron | 45.0% | |
TACCACTACCTCATGGGATA+AGG | - | chr1_1:76709089-76709108 | None:intergenic | 45.0% | |
! | TTATCCCATGAGGTAGTGGT+AGG | + | chr1_1:76709088-76709107 | Msa0045030:intron | 45.0% |
! | GAAAGCGCGTTCTTTCATCT+TGG | + | chr1_1:76709553-76709572 | Msa0045030:CDS | 45.0% |
! | GGGAGCATGTTACCACAATA+AGG | - | chr1_1:76709582-76709601 | None:intergenic | 45.0% |
TCAAAAGAGCTTAGAGTGCG+TGG | + | chr1_1:76709669-76709688 | Msa0045030:CDS | 45.0% | |
TCTGTACTGGAACTTCTTGC+AGG | + | chr1_1:76709832-76709851 | Msa0045030:intron | 45.0% | |
TAGGAGCAGACACCTTATAC+TGG | - | chr1_1:76710143-76710162 | None:intergenic | 45.0% | |
!! | TAAGTTAATTATATATAAAA+AGG | + | chr1_1:76708605-76708624 | Msa0045030:intron | 5.0% |
AAACAAGGTTTAAGGGGGCG+TGG | - | chr1_1:76707295-76707314 | None:intergenic | 50.0% | |
! | CGCCCCCTTAAACCTTGTTT+CGG | + | chr1_1:76707295-76707314 | Msa0045030:CDS | 50.0% |
! | TCTTCCAAGTCTTCTGGAGG+AGG | + | chr1_1:76707385-76707404 | Msa0045030:CDS | 50.0% |
!! | TTTCCGATGTGCTCTGGGAT+TGG | + | chr1_1:76707482-76707501 | Msa0045030:intron | 50.0% |
AGACCAATCCCAGAGCACAT+CGG | - | chr1_1:76707488-76707507 | None:intergenic | 50.0% | |
TGCCACTGCAGATATTCCGT+CGG | - | chr1_1:76707780-76707799 | None:intergenic | 50.0% | |
CCAGGTGGAATTGTAGCGTT+GGG | + | chr1_1:76708225-76708244 | Msa0045030:intron | 50.0% | |
GCAATTCAAGCATCAAGGGC+TGG | + | chr1_1:76708285-76708304 | Msa0045030:CDS | 50.0% | |
AGCTGATGTAGCGACAGTAG+CGG | - | chr1_1:76708826-76708845 | None:intergenic | 50.0% | |
! | CAATGTCGCGGTTTTCACAG+TGG | + | chr1_1:76708898-76708917 | Msa0045030:intron | 50.0% |
! | TTCTCCAGCCTTATCCCATG+AGG | + | chr1_1:76709078-76709097 | Msa0045030:intron | 50.0% |
ACTACCTCATGGGATAAGGC+TGG | - | chr1_1:76709085-76709104 | None:intergenic | 50.0% | |
! | AGCCTTATCCCATGAGGTAG+TGG | + | chr1_1:76709084-76709103 | Msa0045030:intron | 50.0% |
GACACCTACCACTACCTCAT+GGG | - | chr1_1:76709095-76709114 | None:intergenic | 50.0% | |
AGACACCTACCACTACCTCA+TGG | - | chr1_1:76709096-76709115 | None:intergenic | 50.0% | |
! | GCAGGTGAGAACTACCGATT+TGG | + | chr1_1:76709850-76709869 | Msa0045030:intron | 50.0% |
!! | CAGTACTGGCTCCAAAGAGA+GGG | + | chr1_1:76709990-76710009 | Msa0045030:CDS | 50.0% |
!! | AGTACTGGCTCCAAAGAGAG+GGG | + | chr1_1:76709991-76710010 | Msa0045030:CDS | 50.0% |
!! | TTCGGATTCGGTGGATGGGT+CGG | - | chr1_1:76707088-76707107 | None:intergenic | 55.0% |
! | TCCAAGTCTTCTGGAGGAGG+AGG | + | chr1_1:76707388-76707407 | Msa0045030:CDS | 55.0% |
TCCTCCTCCTCCAGAAGACT+TGG | - | chr1_1:76707392-76707411 | None:intergenic | 55.0% | |
!! | TGTGCTCTGGGATTGGTCTC+TGG | + | chr1_1:76707489-76707508 | Msa0045030:intron | 55.0% |
CTCCGACGGAATATCTGCAG+TGG | + | chr1_1:76707775-76707794 | Msa0045030:CDS | 55.0% | |
GACGGAATATCTGCAGTGGC+AGG | + | chr1_1:76707779-76707798 | Msa0045030:CDS | 55.0% | |
GCCAGGTGGAATTGTAGCGT+TGG | + | chr1_1:76708224-76708243 | Msa0045030:intron | 55.0% | |
CCCAACGCTACAATTCCACC+TGG | - | chr1_1:76708228-76708247 | None:intergenic | 55.0% | |
GCGACTATGGGAGCTCTGTT+TGG | - | chr1_1:76709522-76709541 | None:intergenic | 55.0% | |
AGAGTGCGTGGAGTTGTTGC+AGG | + | chr1_1:76709681-76709700 | Msa0045030:CDS | 55.0% | |
!! | CCTCTCTTTGGAGCCAGTAC+TGG | - | chr1_1:76709992-76710011 | None:intergenic | 55.0% |
!! | CCAGTACTGGCTCCAAAGAG+AGG | + | chr1_1:76709989-76710008 | Msa0045030:CDS | 55.0% |
!! | TCGGATTCGGTGGATGGGTC+GGG | - | chr1_1:76707087-76707106 | None:intergenic | 60.0% |
CTCCTACAGCAAGCGCTTCG+CGG | - | chr1_1:76710038-76710057 | None:intergenic | 60.0% | |
TGGCTCCAAAGAGAGGGGCC+AGG | + | chr1_1:76709996-76710015 | Msa0045030:CDS | 65.0% | |
CGAGACCTGGCCCCTCTCTT+TGG | - | chr1_1:76710004-76710023 | None:intergenic | 65.0% | |
! | GGACACGGGTTGACGAGACC+TGG | - | chr1_1:76710017-76710036 | None:intergenic | 65.0% |
AGCAAGCGCTTCGCGGACAC+GGG | - | chr1_1:76710031-76710050 | None:intergenic | 65.0% | |
CAGCAAGCGCTTCGCGGACA+CGG | - | chr1_1:76710032-76710051 | None:intergenic | 65.0% | |
!! | GTCCGCGAAGCGCTTGCTGT+AGG | + | chr1_1:76710033-76710052 | Msa0045030:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 76707047 | 76710513 | 76707047 | ID=Msa0045030;Name=Msa0045030 |
chr1_1 | mRNA | 76707047 | 76710513 | 76707047 | ID=Msa0045030-mRNA-1;Parent=Msa0045030;Name=Msa0045030-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.8|0.66|0.83|0.8|0.66|6|145|398 |
chr1_1 | exon | 76707047 | 76707054 | 76707047 | ID=Msa0045030-mRNA-1:exon:26170;Parent=Msa0045030-mRNA-1 |
chr1_1 | exon | 76707135 | 76707443 | 76707135 | ID=Msa0045030-mRNA-1:exon:26171;Parent=Msa0045030-mRNA-1 |
chr1_1 | exon | 76707748 | 76707800 | 76707748 | ID=Msa0045030-mRNA-1:exon:26172;Parent=Msa0045030-mRNA-1 |
chr1_1 | exon | 76708229 | 76708364 | 76708229 | ID=Msa0045030-mRNA-1:exon:26173;Parent=Msa0045030-mRNA-1 |
chr1_1 | exon | 76709527 | 76709702 | 76709527 | ID=Msa0045030-mRNA-1:exon:26174;Parent=Msa0045030-mRNA-1 |
chr1_1 | exon | 76709854 | 76710513 | 76709854 | ID=Msa0045030-mRNA-1:exon:26175;Parent=Msa0045030-mRNA-1 |
chr1_1 | CDS | 76707047 | 76707054 | 76707047 | ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1 |
chr1_1 | CDS | 76707135 | 76707443 | 76707135 | ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1 |
chr1_1 | CDS | 76707748 | 76707800 | 76707748 | ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1 |
chr1_1 | CDS | 76708229 | 76708364 | 76708229 | ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1 |
chr1_1 | CDS | 76709527 | 76709702 | 76709527 | ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1 |
chr1_1 | CDS | 76709854 | 76710368 | 76709854 | ID=Msa0045030-mRNA-1:cds;Parent=Msa0045030-mRNA-1 |
chr1_1 | three_prime_UTR | 76710369 | 76710513 | 76710369 | ID=Msa0045030-mRNA-1:three_prime_utr;Parent=Msa0045030-mRNA-1 |
Gene Sequence |
Protein sequence |